ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart15c02 |
|---|---|
| Clone Library Name | barley_pub |
>PIP13_ORYSA (Q9SXF8) Aquaporin PIP 1.3 (Plasma membrane intrinsic protein 1.3)| (OsPIP1.3) (Water channel protein RWC3) (RWC-3) Length = 288 Score = 56.6 bits (135), Expect = 2e-08 Identities = 26/27 (96%), Positives = 26/27 (96%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKSR 342 W GPFIGAALAAIYHVVVIRAIPFKSR Sbjct: 261 WVGPFIGAALAAIYHVVVIRAIPFKSR 287
>PIP11_VICFA (P61838) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)| (PIP1a) (Aquaporin 1) (Plasma membrane aquaporin 1) Length = 286 Score = 55.8 bits (133), Expect = 4e-08 Identities = 25/27 (92%), Positives = 26/27 (96%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKSR 342 W GPFIGAALAA+YHVVVIRAIPFKSR Sbjct: 259 WVGPFIGAALAALYHVVVIRAIPFKSR 285
>PIP11_ARATH (P61837) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)| (PIP1a) (Aquaporin 1) (Plasma membrane aquaporin 1) Length = 286 Score = 55.8 bits (133), Expect = 4e-08 Identities = 25/27 (92%), Positives = 26/27 (96%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKSR 342 W GPFIGAALAA+YHVVVIRAIPFKSR Sbjct: 259 WVGPFIGAALAALYHVVVIRAIPFKSR 285
>PIP12_ARATH (Q06611) Aquaporin PIP1.2 (Plasma membrane intrinsic protein 1b)| (PIP1b) (Transmembrane protein A) (TMP-A) (AthH2) Length = 286 Score = 55.5 bits (132), Expect = 5e-08 Identities = 24/27 (88%), Positives = 26/27 (96%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKSR 342 W GPFIGAALAA+YHV+VIRAIPFKSR Sbjct: 259 WVGPFIGAALAALYHVIVIRAIPFKSR 285
>PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane intrinsic| protein 1.2) (OsPIP1.2) Length = 282 Score = 54.3 bits (129), Expect = 1e-07 Identities = 25/27 (92%), Positives = 25/27 (92%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKSR 342 W GPFIGAALAAIYH VVIRAIPFKSR Sbjct: 255 WVGPFIGAALAAIYHQVVIRAIPFKSR 281
>PIP11_ORYSA (Q6EU94) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)| (PIP1a) (OsPIP1.1) (Water channel protein RWC1) (RWC-1) Length = 289 Score = 53.5 bits (127), Expect = 2e-07 Identities = 23/27 (85%), Positives = 25/27 (92%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKSR 342 W GPF+GAALAAIYH V+IRAIPFKSR Sbjct: 262 WVGPFVGAALAAIYHQVIIRAIPFKSR 288
>PIP13_ARATH (Q08733) Aquaporin PIP1.3 (Plasma membrane intrinsic protein 1c)| (PIP1c) (Transmembrane protein B) (TMP-B) Length = 286 Score = 52.4 bits (124), Expect = 4e-07 Identities = 23/27 (85%), Positives = 25/27 (92%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKSR 342 W GPFIGAALAA+YH +VIRAIPFKSR Sbjct: 259 WVGPFIGAALAALYHQLVIRAIPFKSR 285
>PIP2_PEA (P25794) Probable aquaporin PIP-type 7a (Turgor-responsive protein| 7a) (Turgor-responsive protein 31) Length = 289 Score = 52.4 bits (124), Expect = 4e-07 Identities = 23/27 (85%), Positives = 25/27 (92%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKSR 342 W GPFIGAALAA+YH VVIRAIPFKS+ Sbjct: 263 WVGPFIGAALAALYHQVVIRAIPFKSK 289
>PIP15_ARATH (Q8LAA6) Probable aquaporin PIP1.5 (Plasma membrane intrinsic| protein 1d) (PIP1d) Length = 287 Score = 52.0 bits (123), Expect = 6e-07 Identities = 22/27 (81%), Positives = 25/27 (92%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKSR 342 W GPFIGAALAA+YH +VIRAIPFKS+ Sbjct: 260 WVGPFIGAALAALYHQIVIRAIPFKSK 286
>PIP14_ARATH (Q39196) Probable aquaporin PIP1.4 (Plasma membrane intrinsic| protein 1.4) (Transmembrane protein C) (TMP-C) Length = 287 Score = 52.0 bits (123), Expect = 6e-07 Identities = 22/27 (81%), Positives = 25/27 (92%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKSR 342 W GPFIGAALAA+YH +VIRAIPFKS+ Sbjct: 260 WVGPFIGAALAALYHQIVIRAIPFKSK 286
>PIP1_LYCES (Q08451) Probable aquaporin PIP-type pTOM75 (Ripening-associated| membrane protein) (RAMP) Length = 286 Score = 44.7 bits (104), Expect = 9e-05 Identities = 18/24 (75%), Positives = 21/24 (87%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPF 351 W GP IGAALAAIYH ++IRA+PF Sbjct: 260 WVGPMIGAALAAIYHQIIIRAMPF 283
>PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic protein 2b)| (PIP2b) (TMP2b) Length = 285 Score = 40.0 bits (92), Expect = 0.002 Identities = 18/28 (64%), Positives = 20/28 (71%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKSRG 339 W GPFIGAA+AA YH V+RA KS G Sbjct: 250 WVGPFIGAAIAAFYHQFVLRASGSKSLG 277
>PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic protein 2a)| (PIP2a) Length = 287 Score = 40.0 bits (92), Expect = 0.002 Identities = 18/28 (64%), Positives = 20/28 (71%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKSRG 339 W GPFIGAA+AA YH V+RA KS G Sbjct: 252 WVGPFIGAAIAAFYHQFVLRASGSKSLG 279
>PIP25_ORYSA (Q8GRI8) Aquaporin PIP2.5 (Plasma membrane intrinsic protein 2.5)| (OsPIP2.5) Length = 283 Score = 39.7 bits (91), Expect = 0.003 Identities = 15/21 (71%), Positives = 19/21 (90%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRA 360 W GPFIGAA+AA+YH +V+RA Sbjct: 251 WVGPFIGAAIAALYHQIVLRA 271
>PIP24_ORYSA (Q8GRT8) Aquaporin PIP2.4 (Plasma membrane intrinsic protein 2.4)| (OsPIP2.4) Length = 286 Score = 39.7 bits (91), Expect = 0.003 Identities = 15/21 (71%), Positives = 19/21 (90%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRA 360 W GPFIGAA+AA+YH V++RA Sbjct: 254 WVGPFIGAAIAALYHQVILRA 274
>PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane intrinsic| protein 2e) (PIP2e) Length = 289 Score = 38.9 bits (89), Expect = 0.005 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKSRG 339 W GPF+GAA+AA YH V+RA K+ G Sbjct: 251 WVGPFVGAAIAAFYHQFVLRAGAMKAYG 278
>PIP23_ARATH (P30302) Aquaporin PIP2.3 (Plasma membrane intrinsic protein 2c)| (PIP2c) (TMP2C) (RD28-PIP) (Water stress-induced tonoplast intrinsic protein) (WSI-TIP) Length = 285 Score = 38.5 bits (88), Expect = 0.006 Identities = 17/28 (60%), Positives = 19/28 (67%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKSRG 339 W GPFIGA +AA YH V+RA KS G Sbjct: 250 WVGPFIGATIAAFYHQFVLRASGSKSLG 277
>PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane intrinsic| protein 2a) (PIP2a) (OsPIP2.1) Length = 290 Score = 38.5 bits (88), Expect = 0.006 Identities = 15/28 (53%), Positives = 20/28 (71%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKSRG 339 W GPF+GAA+AA YH ++RA K+ G Sbjct: 257 WVGPFVGAAIAAFYHQYILRAGAIKALG 284
>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic| protein 2d) (PIP2d) Length = 286 Score = 38.1 bits (87), Expect = 0.008 Identities = 17/33 (51%), Positives = 22/33 (66%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKSRG*WTNQ 324 W GPF GAA+AA YH V+RA K+ G + +Q Sbjct: 251 WVGPFAGAAIAAFYHQFVLRAGAIKALGSFRSQ 283
>PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane intrinsic| protein 2.6) (OsPIP2.6) Length = 282 Score = 38.1 bits (87), Expect = 0.008 Identities = 16/28 (57%), Positives = 19/28 (67%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKSRG 339 WAGPFIGA AA YH ++RA K+ G Sbjct: 247 WAGPFIGALAAAAYHQYILRAAAIKALG 274
>PIP1_ATRCA (P42767) Aquaporin PIP-type| Length = 282 Score = 36.6 bits (83), Expect = 0.025 Identities = 15/28 (53%), Positives = 18/28 (64%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKSRG 339 W GPF+GA AA YH V+RA K+ G Sbjct: 247 WVGPFVGALAAAAYHQYVLRAAAIKALG 274
>PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane intrinsic| protein 2.4) Length = 291 Score = 36.6 bits (83), Expect = 0.025 Identities = 15/28 (53%), Positives = 18/28 (64%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKSRG 339 W GP IGAA AA YH ++RA K+ G Sbjct: 252 WVGPMIGAAAAAFYHQFILRAAAIKALG 279
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 36.6 bits (83), Expect = 0.025 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Frame = +2 Query: 155 RRCRQAHTPRRDGRFENY---YSVRGRDTIHVRAHQQPPPPPHDRSTMNSDKIPSMA 316 ++ + H PR + +N Y+ DTI H+ PPPPP T +SD+ S + Sbjct: 148 QKSQVVHGPRGESLIDNQRKRYNYEDVDTIPTTKHKAPPPPPPTAETFDSDQTSSFS 204
>PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic protein 3)| (Salt stress-induced major intrinsic protein) Length = 280 Score = 35.4 bits (80), Expect = 0.055 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKSRG 339 W GPF+GA AA YH ++RA K+ G Sbjct: 245 WVGPFLGALAAAAYHQYILRASAIKALG 272
>PIP23_ORYSA (Q7XUA6) Probable aquaporin PIP2.3 (Plasma membrane intrinsic| protein 2.3) (OsPIP2.3) Length = 290 Score = 34.7 bits (78), Expect = 0.094 Identities = 14/21 (66%), Positives = 16/21 (76%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRA 360 W GP IGAA+AA YH V+RA Sbjct: 257 WVGPLIGAAIAAAYHQYVLRA 277
>PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane intrinsic| protein 3b) (PIP3b) Length = 278 Score = 34.7 bits (78), Expect = 0.094 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKS 345 W GPF+GA AA YH ++RA K+ Sbjct: 243 WVGPFVGALAAAAYHQYILRAAAIKA 268
>PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane intrinsic| protein 2.2) (OsPIP2.2) Length = 288 Score = 34.7 bits (78), Expect = 0.094 Identities = 14/21 (66%), Positives = 16/21 (76%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRA 360 W GP IGAA+AA YH V+RA Sbjct: 256 WVGPLIGAAIAAAYHQYVLRA 276
>TIP51_ORYSA (Q7XU31) Probable aquaporin TIP5.1 (Tonoplast intrinsic protein| 5.1) (OsTIP5.1) Length = 269 Score = 33.1 bits (74), Expect = 0.27 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = -1 Query: 422 WAGPFIGAALAAIYH-VVVIRAIPFKSRG*WTNQSGR 315 WAGP +GAA+AA+ H +V +P + TN+S R Sbjct: 224 WAGPMVGAAVAALVHQALVFPTVPEPAPAPATNESAR 260
>PIP28_ORYSA (Q7Y1E6) Probable aquaporin PIP2.8 (Plasma membrane intrinsic| protein 2.8) (OsPIP2.8) Length = 280 Score = 32.3 bits (72), Expect = 0.46 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIRAIPFKS 345 W GPF GAA A IYH ++R K+ Sbjct: 244 WVGPFAGAAAAMIYHHYILRGAAAKA 269
>PIP27_ORYSA (Q651D5) Probable aquaporin PIP2.7 (Plasma membrane intrinsic| protein 2.7) (OsPIP2.7) Length = 290 Score = 32.0 bits (71), Expect = 0.61 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = -1 Query: 422 WAGPFIGAALAAIYHVVVIR 363 W GP IGA LAA YH +V+R Sbjct: 254 WVGPVIGAFLAAAYHKLVLR 273
>INADL_MOUSE (Q63ZW7) InaD-like protein (Inadl protein) (Pals1-associated tight| junction protein) (Protein associated to tight junctions) (Channel-interacting PDZ domain-containing protein) Length = 1834 Score = 31.6 bits (70), Expect = 0.79 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +2 Query: 236 HVRAHQQPPPPPHDRSTMNSDKIPSMAAQTDW 331 H+RA + PPPPH R + + + A T W Sbjct: 882 HLRAMESNPPPPHIREAAPASPVLELQAGTQW 913
>RS5_HALSA (Q9HPB4) 30S ribosomal protein S5P| Length = 212 Score = 30.4 bits (67), Expect = 1.8 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = -3 Query: 420 GGTVHRRGAGGDLPRGGDQGDPLQEPRLVDQSVWAAMDGILSLFIVDRSCGGG 262 GG V + G D+ D G PL+EP +VDQ + D +L + +V R G Sbjct: 14 GGLV-QDGEVEDMSEALDTGLPLKEPEIVDQLLPGLDDEVLDINMVQRMTDSG 65
>TIP31_ARATH (P26587) Aquaporin TIP3.1 (Tonoplast intrinsic protein 3.1)| (Alpha-tonoplast intrinsic protein) (Alpha-TIP) Length = 268 Score = 30.0 bits (66), Expect = 2.3 Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 1/24 (4%) Frame = -1 Query: 422 WAGPFIGAALAA-IYHVVVIRAIP 354 W GPFIG+ALAA IY +VI P Sbjct: 228 WVGPFIGSALAALIYEYMVIPTEP 251
>TIP32_ARATH (O22588) Probable aquaporin TIP3.2 (Tonoplast intrinsic protein| 3.2) (Beta-tonoplast intrinsic protein) (Beta-TIP) Length = 267 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = -1 Query: 422 WAGPFIGAALAA-IYHVVVIRAI 357 W GPFIG ALAA IY ++I ++ Sbjct: 228 WVGPFIGGALAALIYEYMIIPSV 250
>TIP12_ORYSA (Q94CS9) Probable aquaporin TIP1.2 (Tonoplast intrinsic protein| 1.2) (OsTIP1.2) Length = 252 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%) Frame = -1 Query: 422 WAGPFIGAALAA-IYHVVVIRAIP 354 W GPF+GAA+AA IY ++ I P Sbjct: 220 WLGPFVGAAIAALIYDIIFIGQRP 243
>TIP13_ARATH (O82598) Putative aquaporin TIP1.3 (Tonoplast intrinsic protein| 1.3) (Gamma-tonoplast intrinsic protein 3) (Gamma-TIP3) Length = 252 Score = 28.9 bits (63), Expect = 5.1 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -1 Query: 422 WAGPFIGAALAAIYH 378 W GPFIGAA+AAI + Sbjct: 220 WVGPFIGAAIAAIVY 234
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +2 Query: 164 RQAHTPRRDGRFENYYSVRGRDTIHVRAHQQPPPPP 271 +Q HTPR+ ++ + H + QQPPPPP Sbjct: 11 KQNHTPRK------HHQHHHQQQHHQQQQQQPPPPP 40
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +2 Query: 164 RQAHTPRRDGRFENYYSVRGRDTIHVRAHQQPPPPP 271 +Q HTPR+ ++ + H + QQPPPPP Sbjct: 11 KQNHTPRK------HHQHHHQQQHHQQQQQQPPPPP 40
>RL4_HALMA (P12735) 50S ribosomal protein L4P (Hmal4) (Hl6)| Length = 246 Score = 28.5 bits (62), Expect = 6.7 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = +2 Query: 167 QAHTPRRDGRFENY-YSVRGRDTIHVRAHQQPPPPPHDRSTMNSDKIPSMAAQT 325 QAH P++DGR +V+GR AH PP DRS +DK +A ++ Sbjct: 67 QAHVPKQDGRARRVPQAVKGRS-----AH--PPKTEKDRSLDLNDKERQLAVRS 113
>NPHP4_MOUSE (P59240) Nephrocystin-4 (Nephroretinin)| Length = 1425 Score = 28.1 bits (61), Expect = 8.8 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -3 Query: 390 GDLPRGGDQGDPLQEPRLVDQSVWAAMDGILSLF 289 G LP GD GD L++PR + W D +L+ Sbjct: 219 GLLPPHGDTGDALRKPRFQKPTTWHLDDLFFTLY 252
>HYIN1_AGRVI (Q04557) Indoleacetamide hydrolase (EC 3.5.1.-) (IAH)| (Indole-3-acetamide hydrolase) Length = 462 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +2 Query: 155 RRCRQAHTPRRDGRFENYYSVRGRDTI 235 RR + + PR +ENYYS G D + Sbjct: 346 RRALRCYKPRLKATYENYYSSNGLDAV 372
>NO75_LUPLU (Q06841) Early nodulin 75 protein (N-75) (NGM-75) (Fragment)| Length = 434 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 3/23 (13%) Frame = +2 Query: 233 IHVRAHQQPP---PPPHDRSTMN 292 +H +H++PP PPPH++S M+ Sbjct: 267 VHPPSHEKPPFVYPPPHEKSPMH 289 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,084,529 Number of Sequences: 219361 Number of extensions: 1212153 Number of successful extensions: 6041 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 4683 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5564 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
