ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart15c01 |
|---|---|
| Clone Library Name | barley_pub |
>K1267_MOUSE (Q80TG1) Protein KIAA1267| Length = 1036 Score = 29.3 bits (64), Expect = 2.7 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = -3 Query: 263 TTGRTASPDAPTRGLASSAWNSSTGRLHSVPRTGNCRHRRCTDT 132 T+G+TA P AP GLA SST H + N R T + Sbjct: 143 TSGQTALPQAPVNGLAKKLTKSSTHSDHDNSSSLNGGKRSLTSS 186
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = -2 Query: 234 PDQGPGEQCMEFLHRPPAQCAAHGQLSPPP 145 P GPG RPPA + HG + PPP Sbjct: 356 PSAGPGMYPPPPPSRPPAPPSGHGMIPPPP 385
>K1267_HUMAN (Q7Z3B3) Protein KIAA1267| Length = 1105 Score = 29.3 bits (64), Expect = 2.7 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = -3 Query: 263 TTGRTASPDAPTRGLASSAWNSSTGRLHSVPRTGNCRHRRCTDT 132 T+G+TA P AP GLA SST H + N R T + Sbjct: 143 TSGQTALPQAPVNGLAKKLTKSSTHSDHDNSTSLNGGKRALTSS 186
>WASF3_HUMAN (Q9UPY6) Wiskott-Aldrich syndrome protein family member 3| (WASP-family protein member 3) (WAVE-3 protein) (Verprolin homology domain-containing protein 3) Length = 502 Score = 28.5 bits (62), Expect = 4.7 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%) Frame = -2 Query: 234 PDQGPGEQCMEFLHRPPAQCAAHGQLS----PPP 145 P GP Q E +RPP+ A H L+ PPP Sbjct: 273 PPHGPASQAAEHEYRPPSASARHMALNRPQQPPP 306
>KIN16_CAEEL (P34892) Receptor-like tyrosine-protein kinase kin-16 precursor (EC| 2.7.10.1) Length = 495 Score = 28.5 bits (62), Expect = 4.7 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = +2 Query: 59 VCIFTLFSRHKGSKQLQIPVLPSAT-YQYIGGGDNCPCAAHC 181 +C++ +F+ QL P +PS Y+Y+ G CP HC Sbjct: 388 ICLYEIFTLG----QLPYPDVPSERIYEYMHSGRRCPQPQHC 425
>FAS2_PENPA (P15368) Fatty acid synthase alpha subunit (EC 2.3.1.86) [Includes:| Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Beta-ketoacyl reductase); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta-ketoacyl synth Length = 1857 Score = 28.5 bits (62), Expect = 4.7 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = +3 Query: 135 ISTSAVATIARARHTVQAAGGGIPCTARQAPGR 233 ++T+A I R+ +V A G G+ TAR+ PG+ Sbjct: 1376 LTTTATDKIGRSVRSVPAPGQGVLTTARENPGK 1408
>ATMA_ECOLI (P0ABB8) Magnesium-transporting ATPase, P-type 1 (EC 3.6.3.2)| (Mg(2+) transport ATPase, P-type 1) Length = 898 Score = 28.1 bits (61), Expect = 6.1 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -1 Query: 259 PAELHRRTPRPGAWRAVHGIPPPAACTVCRARAIV 155 P+ L R P PGA + V+ + PP+ C A++ Sbjct: 14 PSRLVHRDPLPGAQQTVNTVVPPSLSAHCLKMAVM 48
>ATMA_ECO57 (P0ABB9) Magnesium-transporting ATPase, P-type 1 (EC 3.6.3.2)| (Mg(2+) transport ATPase, P-type 1) Length = 898 Score = 28.1 bits (61), Expect = 6.1 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -1 Query: 259 PAELHRRTPRPGAWRAVHGIPPPAACTVCRARAIV 155 P+ L R P PGA + V+ + PP+ C A++ Sbjct: 14 PSRLVHRDPLPGAQQTVNTVVPPSLSAHCLKMAVM 48
>YPL2_CAEEL (O44440) Protein yippee-like B0546.4| Length = 161 Score = 28.1 bits (61), Expect = 6.1 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Frame = -3 Query: 230 TRGLASSAWNSSTGRLHSVPRT-----GNCRHRRCTDTWQTAILEFVAVC 96 ++ L S A+ STG R G C HR+ T W T F C Sbjct: 28 SKELTSKAFTGSTGPATLFKRAWNVVYGRCEHRKMTTGWHTVRDVFCVTC 77
>SEM5B_HUMAN (Q9P283) Semaphorin-5B precursor| Length = 1093 Score = 27.7 bits (60), Expect = 8.0 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Frame = +2 Query: 164 PCAAHCAGGRWRNSMHC-SPGPWSG 235 PC+A C GG ++ + C SP P G Sbjct: 863 PCSASCGGGHYQRTRSCTSPAPSPG 887
>HXADA_BRARE (Q6W990) Homeobox protein Hox-A13a| Length = 310 Score = 27.7 bits (60), Expect = 8.0 Identities = 14/39 (35%), Positives = 16/39 (41%) Frame = +2 Query: 125 SATYQYIGGGDNCPCAAHCAGGRWRNSMHCSPGPWSGRP 241 S +Y Y GGG PC G C+ P SG P Sbjct: 91 SISYGYFGGGGYYPCRMSHHHGSGGGVKTCAQSPASGSP 129
>ZBTB3_MOUSE (Q91X45) Zinc finger and BTB domain-containing protein 3| Length = 518 Score = 27.7 bits (60), Expect = 8.0 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = -2 Query: 225 GPGEQCMEFLHRP-PAQCAAHGQLSPPPMY*YVADGNTGICSCLLPLCR 82 GPG+ + P PA A H L PPP Y A G+ G + +P C+ Sbjct: 374 GPGQYHRGLVTSPLPAPAALHEPLYPPPEY-EAAQGSFGNFTEDVPTCK 421
>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)| Length = 815 Score = 27.7 bits (60), Expect = 8.0 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -2 Query: 240 GRPDQGPGEQCMEFLHRPPAQCAAHGQLSPPPMY*YVADGNTG 112 G P G Q + +PP +GQ+ PPP++ + +G TG Sbjct: 316 GNPGNTGGPQQQQ--QQPPQPPMNNGQMGPPPLHSPLGNGPTG 356
>ESTJ_HELVI (P12992) Juvenile hormone esterase precursor (EC 3.1.1.59) (JH| esterase) Length = 564 Score = 27.7 bits (60), Expect = 8.0 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +1 Query: 91 RQQTATNSSIAVCHVSVHRRWRQLP-VRGTLCRRPVEEF 204 R A+ S A + ++H W+ LP VRGT RP+ F Sbjct: 98 RLMAASEMSEACIYANIHVPWQSLPRVRGTTPLRPILVF 136 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,026,331 Number of Sequences: 219361 Number of extensions: 1134525 Number of successful extensions: 3632 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3519 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3632 length of database: 80,573,946 effective HSP length: 65 effective length of database: 66,315,481 effective search space used: 1591571544 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
