>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete
             sequence
          Length = 141582

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                         
Query: 185   ggcggccggtggaggaattccatgcactgctcgccaggcccctggtcggggcgtccggcg 244
             ||||| ||||| |||||  | ||||||| |||||| |  | |||||||||||| ||||||
Sbjct: 99376 ggcgggcggtgcaggaacgcgatgcactcctcgccggagcgctggtcggggcggccggcg 99317

                                 
Query: 245   atgcagttctgccggtcgtc 264
             ||||||||||| ||||||||
Sbjct: 99316 atgcagttctggcggtcgtc 99297

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                            
Query: 185      ggcggccggtggaggaattccatgcactgctcgccaggcccctggtcggggcgtccggcg 244
                ||||| ||||| |||||  | ||||||| |||||| |  | |||||||||||| ||||||
Sbjct: 32780165 ggcgggcggtgcaggaacgcgatgcactcctcgccggagcgctggtcggggcggccggcg 32780224

                                    
Query: 245      atgcagttctgccggtcgtc 264
                ||||||||||| ||||||||
Sbjct: 32780225 atgcagttctggcggtcgtc 32780244

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                            
Query: 185      ggcggccggtggaggaattccatgcactgctcgccaggcccctggtcggggcgtccggcg 244
                ||||| ||||| |||||  | ||||||| |||||| |  | |||||||||||| ||||||
Sbjct: 32870675 ggcgggcggtgcaggaacgcgatgcactcctcgccggagcgctggtcggggcggccggcg 32870734

                                    
Query: 245      atgcagttctgccggtcgtc 264
                ||||||||||| ||||||||
Sbjct: 32870735 atgcagttctggcggtcgtc 32870754

>dbj|AK064239.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A10, full
            insert sequence
          Length = 1408

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                        
Query: 185  ggcggccggtggaggaattccatgcactgctcgccaggcccctggtcggggcgtccggcg 244
            ||||| ||||| |||||  | ||||||| |||||| |  | |||||||||||| ||||||
Sbjct: 1197 ggcgggcggtgcaggaacgcgatgcactcctcgccggagcgctggtcggggcggccggcg 1138

                                
Query: 245  atgcagttctgccggtcgtc 264
            ||||||||||| ||||||||
Sbjct: 1137 atgcagttctggcggtcgtc 1118

>gb|AC098647.2| Homo sapiens chromosome 3 clone RP11-130G7, complete sequence
          Length = 159521

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 57    gtgtgtgcatttttacccttttct 80
             ||||||||||||||||||||||||
Sbjct: 67673 gtgtgtgcatttttacccttttct 67696

>gb|AC099779.2| Homo sapiens chromosome 3 clone RP11-760G13, complete sequence
          Length = 198235

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 57     gtgtgtgcatttttacccttttct 80
              ||||||||||||||||||||||||
Sbjct: 144264 gtgtgtgcatttttacccttttct 144287

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 66/80 (82%)
 Strand = Plus / Plus

                                                                           
Query: 185     ggcggccggtggaggaattccatgcactgctcgccaggcccctggtcggggcgtccggcg 244
               ||||| |||||||||||  | | |||||| ||| | || | ||||||||| |  ||||||
Sbjct: 4061878 ggcgggcggtggaggaaggcgaggcactggtcggccgggcgctggtcgggcctcccggcg 4061937

                                   
Query: 245     atgcagttctgccggtcgtc 264
               ||||||||||| ||||||||
Sbjct: 4061938 atgcagttctggcggtcgtc 4061957

>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0534H07
          Length = 144689

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 66/80 (82%)
 Strand = Plus / Plus

                                                                         
Query: 185   ggcggccggtggaggaattccatgcactgctcgccaggcccctggtcggggcgtccggcg 244
             ||||| |||||||||||  | | |||||| ||| | || | ||||||||| |  ||||||
Sbjct: 54736 ggcgggcggtggaggaaggcgaggcactggtcggccgggcgctggtcgggcctcccggcg 54795

                                 
Query: 245   atgcagttctgccggtcgtc 264
             ||||||||||| ||||||||
Sbjct: 54796 atgcagttctggcggtcgtc 54815

>ref|NM_192605.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1713

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 208  gcactgctcgccaggcccctggtcggggcgtccggcgatgcagttc 253
            |||||||||  | |||| |||||||||||| |||| ||||||||||
Sbjct: 1131 gcactgctccgccggcctctggtcggggcggccggggatgcagttc 1086

>gb|AC153623.8| Mus musculus 6 BAC RP23-459F14 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205825

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 21     ttgtttccgaaaaataaacatt 42
              ||||||||||||||||||||||
Sbjct: 119861 ttgtttccgaaaaataaacatt 119840

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                              
Query: 208      gcactgctcgccaggcccctggtcggggcgtccggcgatgcagttc 253
                |||||||||  | |||| |||||||||||| |||| ||||||||||
Sbjct: 23282538 gcactgctccgccggcctctggtcggggcggccggggatgcagttc 23282493

>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1103C09
          Length = 163996

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 208  gcactgctcgccaggcccctggtcggggcgtccggcgatgcagttc 253
            |||||||||  | |||| |||||||||||| |||| ||||||||||
Sbjct: 8236 gcactgctccgccggcctctggtcggggcggccggggatgcagttc 8191

>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0451D05
          Length = 148381

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                           
Query: 208   gcactgctcgccaggcccctggtcggggcgtccggcgatgcagttc 253
             |||||||||  | |||| |||||||||||| |||| ||||||||||
Sbjct: 69280 gcactgctccgccggcctctggtcggggcggccggggatgcagttc 69235

>dbj|AK105670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A04, full
            insert sequence
          Length = 1985

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 208  gcactgctcgccaggcccctggtcggggcgtccggcgatgcagttc 253
            |||||||||  | |||| |||||||||||| |||| ||||||||||
Sbjct: 1190 gcactgctccgccggcctctggtcggggcggccggggatgcagttc 1145

>dbj|AK105266.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D06, full
            insert sequence
          Length = 2042

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 208  gcactgctcgccaggcccctggtcggggcgtccggcgatgcagttc 253
            |||||||||  | |||| |||||||||||| |||| ||||||||||
Sbjct: 1189 gcactgctccgccggcctctggtcggggcggccggggatgcagttc 1144

>gb|AC144628.3| Mus musculus BAC clone RP23-463L22 from 14, complete sequence
          Length = 174162

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 12    gttatttctttgtttccgaaaaata 36
             ||||||||||||||||| |||||||
Sbjct: 54178 gttatttctttgtttcctaaaaata 54154

>emb|AL808128.4| Mouse DNA sequence from clone RP23-387C21 on chromosome 2, complete
             sequence
          Length = 184736

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 45    agtatataccaagtgtgtgca 65
             |||||||||||||||||||||
Sbjct: 42684 agtatataccaagtgtgtgca 42704

>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 146     ggcggtggcgacaattgcccgtgcgcggcaca 177
               |||| |||||||| ||||| ||||||||||||
Sbjct: 2865947 ggcgctggcgacatttgcctgtgcgcggcaca 2865978

>gb|AC115483.2| Drosophila melanogaster clone BACR20D18, complete sequence
          Length = 158241

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 28     cgaaaaataaacattacagtatat 51
              |||||||||||||||||| |||||
Sbjct: 139453 cgaaaaataaacattacaatatat 139476

>ref|XM_646586.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (152.t00006)
           partial mRNA
          Length = 1329

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   ccattgttatttctttgttt 26
           ||||||||||||||||||||
Sbjct: 343 ccattgttatttctttgttt 362

>emb|AL512592.14| Human DNA sequence from clone RP11-35D6 on chromosome 6 Contains part
             of a novel gene (FLJ00197), complete sequence
          Length = 60858

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 30    aaaaataaacattacagtatatac 53
             ||||||||| ||||||||||||||
Sbjct: 39287 aaaaataaaaattacagtatatac 39310

>ref|XM_776886.1| PREDICTED: Strongylocentrotus purpuratus similar to Lon protease
           homolog, mitochondrial precursor (Lon protease-like
           protein) (LONP) (LONHs) (LOC576598), mRNA
          Length = 2241

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 100 acagctacaaattccagtat 119
           ||||||||||||||||||||
Sbjct: 914 acagctacaaattccagtat 895

>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 169     cgcggcacactgtgcaggcg 188
               ||||||||||||||||||||
Sbjct: 1202900 cgcggcacactgtgcaggcg 1202881

>emb|CR354539.13| Zebrafish DNA sequence from clone CH211-250O1 in linkage group 13,
              complete sequence
          Length = 145294

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     aataaacattacagtatata 52
              ||||||||||||||||||||
Sbjct: 115300 aataaacattacagtatata 115281

>gb|AC105021.6| Homo sapiens chromosome 17, clone CTD-2033D24, complete sequence
          Length = 143552

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 94    cagcaaacagctacaaattccagt 117
             |||||||||||||||||| |||||
Sbjct: 98610 cagcaaacagctacaaataccagt 98587

>gb|AC104115.3| Homo sapiens chromosome 5 clone RP11-252I14, complete sequence
          Length = 115793

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 176   cactgtgcaggcggccggtggagg 199
             ||||||||||||| ||||||||||
Sbjct: 56115 cactgtgcaggcgaccggtggagg 56092

>gb|AC009837.13| Homo sapiens chromosome 17, clone RP11-550K23, complete sequence
          Length = 168509

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 94   cagcaaacagctacaaattccagt 117
            |||||||||||||||||| |||||
Sbjct: 1522 cagcaaacagctacaaataccagt 1499

>gb|AE003640.4| Drosophila melanogaster chromosome 2L, section 49 of 83 of the complete
              sequence
          Length = 271118

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 28     cgaaaaataaacattacagtatat 51
              |||||||||||||||||| |||||
Sbjct: 195750 cgaaaaataaacattacaatatat 195727


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,491,603
Number of Sequences: 3902068
Number of extensions: 2491603
Number of successful extensions: 54517
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54337
Number of HSP's gapped (non-prelim): 180
length of query: 271
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 249
effective length of database: 17,147,199,772
effective search space: 4269652743228
effective search space used: 4269652743228
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)