ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart15b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 35 0.10
2EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 35 0.10
3APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 35 0.13
4GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX) ... 31 1.4
5APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 30 3.2
6P53_CANFA (Q29537) Cellular tumor antigen p53 (Tumor suppressor ... 29 5.5
7LGB3_MEDSA (P14962) Leghemoglobin-3 (Leghemoglobin III) 29 7.2
8KIF17_MOUSE (Q99PW8) Kinesin-like protein KIF17 (MmKIF17) 28 9.4

>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
 Frame = -2

Query: 453 YGFSTNLRACCGAGGGKYNYQNXXXXXXXXXXXXXXX---------XXXXSWDGIHLTEA 301
           +GF  +L +CCG  GGKYNY                               WDG+H T+A
Sbjct: 294 HGFKGSLVSCCG-HGGKYNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQA 352

Query: 300 AYKKIAD 280
           A K I D
Sbjct: 353 ANKFIFD 359



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 24/86 (27%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
 Frame = -2

Query: 474 MVKSPASYGFSTNLRACCGAGGGKYNYQNXXXXXXXXXXXXXXXXXXXS---------WD 322
           +   P  +GF   L  CCG GG KYN+                     S         WD
Sbjct: 289 LFSEPEKHGFEFPLITCCGYGG-KYNFSVTAPCGDTVTADDGTKIVVGSCACPSVRVNWD 347

Query: 321 GIHLTEAAYKKIADGWVNGPYCHPAI 244
           G H TEAA +   D    G +  P +
Sbjct: 348 GAHYTEAANEYFFDQISTGAFSDPPV 373



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = -2

Query: 474 MVKSPASYGFSTNLRACCGAGGGKYNYQNXXXXXXXXXXXXXXXXXXXSWDGIHLTEAAY 295
           M+++PA+YGF    + CC  G                            WDG+H T+ AY
Sbjct: 462 MLETPAAYGFEETKKPCCKTG----LLSAGALCKKSTSKICPNTSSYLFWDGVHPTQRAY 517

Query: 294 KKI 286
           K I
Sbjct: 518 KTI 520



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>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)|
           (Endo-1,4-beta-glucanase) (Cellulase) (Fragment)
          Length = 224

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 327 WDGIHLTEAAYKKIADGW 274
           WDG+HL+E  Y KIA+ W
Sbjct: 116 WDGLHLSEIGYTKIANIW 133



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
 Frame = -2

Query: 474 MVKSPASYGFSTNLRACCGAG---GGKYNYQNXXXXXXXXXXXXXXXXXXXSWDGIHLTE 304
           M++SP  YGF    + CC  G   GG +  +                     WDG+H ++
Sbjct: 379 MLESPEDYGFEEIKKPCCKIGLTKGGVFCKER-------TLKNMSNASSYLFWDGLHPSQ 431

Query: 303 AAYK 292
            AY+
Sbjct: 432 RAYE 435



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>P53_CANFA (Q29537) Cellular tumor antigen p53 (Tumor suppressor p53)|
          Length = 381

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 287 IFLYAASVRWMPSQLSDDDGLPHADAPDMPHRAPFW*LYLPPPAPQ 424
           + L  + V W+     D   +P   AP  P  AP W L    P+P+
Sbjct: 43  LLLPESVVNWLDEDSDDAPRMPATSAPTAPGPAPSWPLSSSVPSPK 88



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>LGB3_MEDSA (P14962) Leghemoglobin-3 (Leghemoglobin III)|
          Length = 146

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 253 PGHSVLVLVLVLERAPASGCSSVSFLEAGEGRGGSP 146
           PG+SVL   ++LE+APA+     SFL+   G   SP
Sbjct: 22  PGNSVLFYTIILEKAPAAK-GMFSFLKDSAGVQDSP 56



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>KIF17_MOUSE (Q99PW8) Kinesin-like protein KIF17 (MmKIF17)|
          Length = 1038

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 272  TQPSAIFLYAASVRWMPSQLSDDDGLPHADAPDMPHRAPF 391
            T P     Y  S   + S LS++  LP    P+MP   PF
Sbjct: 973  TDPMKSLTYHNSPPGLNSSLSNNSALPPTQTPEMPQPRPF 1012


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,770,862
Number of Sequences: 219361
Number of extensions: 1023878
Number of successful extensions: 2883
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2878
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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