ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart15b07 |
|---|---|
| Clone Library Name | barley_pub |
>UMP7_ARATH (Q9FMV1) Unknown mitochondrial protein At5g63510| Length = 252 Score = 43.1 bits (100), Expect = 4e-04 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 3/60 (5%) Frame = -3 Query: 497 RIPSGEVWVGNPAKFLRKLTEEEITFIAQSAANYINLAQVHATE---NSKSFDEIELEKK 327 RIPSGE+W GNPA+F+R LT EE I + A +L+ + +E S + E+E KK Sbjct: 187 RIPSGELWGGNPARFIRTLTNEETLEIPKLAVAINHLSGDYFSEFLPYSTVYLEVEKFKK 246
>UMP8_ARATH (Q9SMN1) Unknown mitochondrial protein At3g48680| Length = 256 Score = 43.1 bits (100), Expect = 4e-04 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 3/60 (5%) Frame = -3 Query: 497 RIPSGEVWVGNPAKFLRKLTEEEITFIAQSAANYINLAQVHATE---NSKSFDEIELEKK 327 RIPSGE+W GNPA+F+R LT EE I + A +L+ + +E S + E+E KK Sbjct: 191 RIPSGELWGGNPARFIRTLTNEETLEIPKLAVAINHLSGDYFSEFLPYSTIYLEVEKFKK 250
>Y304_METJA (Q57752) Hypothetical protein MJ0304| Length = 159 Score = 38.5 bits (88), Expect = 0.011 Identities = 17/42 (40%), Positives = 27/42 (64%) Frame = -3 Query: 506 QNTRIPSGEVWVGNPAKFLRKLTEEEITFIAQSAANYINLAQ 381 QN IP + +G P + +R+LTEEEI I ++A Y+ L++ Sbjct: 112 QNKEIPPNSLVLGVPGRVVRELTEEEIKSIKENALRYVKLSE 153
>YRDA_SHIFL (P0A9X0) Protein yrdA| Length = 184 Score = 36.6 bits (83), Expect = 0.040 Identities = 16/38 (42%), Positives = 26/38 (68%) Frame = -3 Query: 506 QNTRIPSGEVWVGNPAKFLRKLTEEEITFIAQSAANYI 393 QN R+ SG +++G+P K +R L++EE + SA NY+ Sbjct: 132 QNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYV 169
>YRDA_ECOLI (P0A9W9) Protein yrdA| Length = 184 Score = 36.6 bits (83), Expect = 0.040 Identities = 16/38 (42%), Positives = 26/38 (68%) Frame = -3 Query: 506 QNTRIPSGEVWVGNPAKFLRKLTEEEITFIAQSAANYI 393 QN R+ SG +++G+P K +R L++EE + SA NY+ Sbjct: 132 QNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYV 169
>Y3753_PSEAE (P40882) Hypothetical protein PA3753| Length = 174 Score = 35.0 bits (79), Expect = 0.12 Identities = 15/47 (31%), Positives = 30/47 (63%) Frame = -3 Query: 506 QNTRIPSGEVWVGNPAKFLRKLTEEEITFIAQSAANYINLAQVHATE 366 + IP G + +G+P K +R+L+E + + SAA+Y++ A+ +A + Sbjct: 122 EGKEIPDGSLVMGSPGKVVRELSEPQKKMLEASAAHYVHNARRYARD 168
>41_HUMAN (P11171) Protein 4.1 (Band 4.1) (P4.1) (EPB4.1) (4.1R)| Length = 864 Score = 32.3 bits (72), Expect = 0.75 Identities = 15/57 (26%), Positives = 33/57 (57%) Frame = +3 Query: 90 IGHEKTENKTKTYVKCSKSPCNKNQSIPTRGLISASDGSCFRCLVWEDVVGEDELRR 260 + E ++K +T +K S+ P K++++ + +S D + + C+V + G+D L+R Sbjct: 184 VKEESPQSKAETELKASQKPIRKHRNMHCK--VSLLDDTVYECVVEKHAKGQDLLKR 238
>PAAY_ECOLI (P77181) Phenylacetic acid degradation protein paaY| Length = 196 Score = 30.8 bits (68), Expect = 2.2 Identities = 16/52 (30%), Positives = 30/52 (57%) Frame = -3 Query: 494 IPSGEVWVGNPAKFLRKLTEEEITFIAQSAANYINLAQVHATENSKSFDEIE 339 +P+ + VG+PAK +R+L+E+E+ + Q Y QV T ++ ++E Sbjct: 127 MPANYLIVGSPAKAIRELSEQELAWKKQGTHEY----QVLVTRCKQTLHQVE 174
>NIPB_DROME (Q7PLI2) Nipped-B protein (SCC2 homolog)| Length = 2077 Score = 30.4 bits (67), Expect = 2.9 Identities = 20/87 (22%), Positives = 38/87 (43%) Frame = -3 Query: 440 TEEEITFIAQSAANYINLAQVHATENSKSFDEIELEKKLRKKFAHKDEEYDSMLGIVREI 261 T + ++ ++ + +QV N S ++ L ++ KKF K E +G+++E Sbjct: 343 TNQNVSTTTSTSTSSSGKSQVRVCINRLSIEDSRLMQQSIKKFVQKSPELARSMGLLQET 402 Query: 260 PPQLILPDNILPDKAPKTAAVAR*DQT 180 Q NI+P A + +R T Sbjct: 403 CQQQHENLNIIPTSAEECVLESRASST 429
>MURA_WOLSU (Q7MAC1) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 421 Score = 30.4 bits (67), Expect = 2.9 Identities = 22/58 (37%), Positives = 27/58 (46%) Frame = +1 Query: 88 LLGMKKQRTRPKHTSNVPSRHVTKTKASLRGV*SQRATAAVFGALSGRMLSGRMSCGG 261 +LG K QR P HT V S + TKA+ V RA+ V G L R +S G Sbjct: 59 MLGAKVQRIDP-HTVKVNSSEILSTKATYDIVRKMRASILVLGPLLSRFGKCEVSLPG 115
>ZN449_HUMAN (Q6P9G9) Zinc finger protein 449 (Zinc finger and SCAN| domain-containing protein 19) Length = 518 Score = 30.0 bits (66), Expect = 3.7 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Frame = +3 Query: 18 PLHCNV-KERYCIRSILQQRSTQNLIGHEKTENKTKTY--VKCSKSPCN 155 P C V K+R+ RS +LIGH++T ++ +TY ++C KS C+ Sbjct: 378 PYECTVCKKRFTRRS--------HLIGHQRTHSEEETYKCLECGKSFCH 418
>VATE_GOSHI (O23948) Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E| subunit) (Vacuolar proton pump E subunit) Length = 237 Score = 30.0 bits (66), Expect = 3.7 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = -3 Query: 458 KFLRKLTEEEITFIAQSAANYINLAQVHATENSKSFDEIELEKKLRKKFAHKDEEYDSML 279 +F+R+ EE+ I+ SA N+ ++ E K E EKK ++ K EY L Sbjct: 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVEIRKKIEYSMQL 74 Query: 278 GIVR 267 R Sbjct: 75 NASR 78
>DUSC_HAEIN (P44606) tRNA-dihydrouridine synthase C (EC 1.-.-.-)| Length = 310 Score = 29.6 bits (65), Expect = 4.9 Identities = 20/70 (28%), Positives = 35/70 (50%) Frame = -3 Query: 494 IPSGEVWVGNPAKFLRKLTEEEITFIAQSAANYINLAQVHATENSKSFDEIELEKKLRKK 315 I +GE+W + T + + + A N NL+ V N++ E++K L+K Sbjct: 198 IANGEIWHWQDGQDCLSQTGCQDLMVGRGALNIPNLSHV-LKSNAEKMPWYEIQKILQK- 255 Query: 314 FAHKDEEYDS 285 +A+ + EYDS Sbjct: 256 YANVENEYDS 265
>HSCA_RICCN (Q92J07) Chaperone protein hscA homolog| Length = 595 Score = 29.3 bits (64), Expect = 6.4 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = -3 Query: 356 SFDEIELEKKLRKKFAHKDEEYDSMLGIVREIPPQLILP 240 S D ++L KK ++ +KD + + I ++I QLILP Sbjct: 250 SIDTLQLAKKAKETLTYKDSFNNDNVSINKQILEQLILP 288
>HGP4_HAEIN (Q57408) Probable hemoglobin and hemoglobin-haptoglobin-binding| protein 4 precursor Length = 999 Score = 29.3 bits (64), Expect = 6.4 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 4/95 (4%) Frame = -3 Query: 488 SGEVWVGNPA---KFLRKLTEEEITFIAQSAANYINLAQVHATENSKSFDEIELEKKLRK 318 +G+ W GNP + +RK EE I +IAQ + + AT + +F ++++ Sbjct: 672 NGKDWQGNPVYTPEQIRKNAEENIAYIAQEKRFKKHSYSLGATFDPLNFLRVQVKYSKGF 731 Query: 317 KFAHKDEEYDSMLGIVREIPPQLILPD-NILPDKA 216 + DE Y + + P ILP+ N+ P++A Sbjct: 732 RTPTSDELYFTF-----KHPDFTILPNPNMKPEEA 761
>GIDA_GEOKA (Q5KU58) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 629 Score = 29.3 bits (64), Expect = 6.4 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Frame = -3 Query: 452 LRKLT--EEEITFIAQSAANYINLAQVHATENSKSFDEIELEKKLRKKFAHKDEEYDSML 279 +RKL +EEI A A + + + KS E+E KK+ K +D +YD++ Sbjct: 523 IRKLAPADEEI---APEVAEQVEIQIKYEGYIQKSLQEVERLKKMENKKIPEDIDYDAIQ 579 Query: 278 GIVREIPPQL 249 G+ E +L Sbjct: 580 GLATEARQKL 589
>YNK6_YEAST (P50942) Hypothetical 133.3 kDa protein in CYB5-LEU4 intergenic| region Length = 1183 Score = 29.3 bits (64), Expect = 6.4 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 4/46 (8%) Frame = -3 Query: 407 AANYINLAQVHATE----NSKSFDEIELEKKLRKKFAHKDEEYDSM 282 AAN +N +Q H+ + NSKS +E+ +KK + K K+ E + + Sbjct: 1127 AANKLNTSQEHSIKVSPSNSKSEEELPCKKKSKPKVPAKNPELEKL 1172
>VATE_CITUN (Q9MB46) Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E| subunit) (Vacuolar proton pump E subunit) Length = 230 Score = 28.9 bits (63), Expect = 8.3 Identities = 18/64 (28%), Positives = 29/64 (45%) Frame = -3 Query: 458 KFLRKLTEEEITFIAQSAANYINLAQVHATENSKSFDEIELEKKLRKKFAHKDEEYDSML 279 +F+R+ EE+ I+ SA N+ ++ E K E E+K ++ K EY L Sbjct: 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQL 74 Query: 278 GIVR 267 R Sbjct: 75 NASR 78
>VATE_CITLI (Q9SWE7) Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E| subunit) (Vacuolar proton pump E subunit) (CLVE-1) Length = 230 Score = 28.9 bits (63), Expect = 8.3 Identities = 18/64 (28%), Positives = 29/64 (45%) Frame = -3 Query: 458 KFLRKLTEEEITFIAQSAANYINLAQVHATENSKSFDEIELEKKLRKKFAHKDEEYDSML 279 +F+R+ EE+ I+ SA N+ ++ E K E E+K ++ K EY L Sbjct: 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQL 74 Query: 278 GIVR 267 R Sbjct: 75 NASR 78
>R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7094 Score = 28.9 bits (63), Expect = 8.3 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = -1 Query: 193 AEIKPLVGMLWFLLHGDLEHLTYVLVLFSVFSCPIRFWVERCCR 62 +EI ++ + W +++G + L + L+ SV FWV CR Sbjct: 3104 SEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSNHAFWVFSYCR 3147
>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.9 bits (63), Expect = 8.3 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = -1 Query: 193 AEIKPLVGMLWFLLHGDLEHLTYVLVLFSVFSCPIRFWVERCCR 62 +EI ++ + W +++G + L + L+ SV FWV CR Sbjct: 3104 SEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSNHAFWVFAYCR 3147
>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.9 bits (63), Expect = 8.3 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = -1 Query: 193 AEIKPLVGMLWFLLHGDLEHLTYVLVLFSVFSCPIRFWVERCCR 62 +EI ++ + W +++G + L + L+ SV FWV CR Sbjct: 3104 SEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSNHAFWVFAYCR 3147
>VATE_MESCR (Q40272) Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E| subunit) (Vacuolar proton pump E subunit) Length = 226 Score = 28.9 bits (63), Expect = 8.3 Identities = 17/64 (26%), Positives = 29/64 (45%) Frame = -3 Query: 458 KFLRKLTEEEITFIAQSAANYINLAQVHATENSKSFDEIELEKKLRKKFAHKDEEYDSML 279 +F+R+ EE+ I+ SA N+ ++ E K E E+K ++ + EY L Sbjct: 15 RFMRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKAKQVDVRRKIEYSMQL 74 Query: 278 GIVR 267 R Sbjct: 75 NASR 78
>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7059 Score = 28.9 bits (63), Expect = 8.3 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = -1 Query: 193 AEIKPLVGMLWFLLHGDLEHLTYVLVLFSVFSCPIRFWVERCCR 62 +EI ++ + W +++G + L + L+ SV FWV CR Sbjct: 3104 SEISVIMHLQWLVMYGTIMPLWFCLLYISVVVSNHAFWVFSYCR 3147
>YJV8_YEAST (P40892) Putative acetyltransferase in HXT11-HXT8 intergenic region| (EC 2.3.1.-) Length = 196 Score = 28.9 bits (63), Expect = 8.3 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -3 Query: 494 IPSGEVWVGNPAKFLRKLTEEEIT 423 IP V GNP K +RK+TE++ T Sbjct: 167 IPENVVAAGNPCKVIRKITEKDST 190 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,786,229 Number of Sequences: 219361 Number of extensions: 1237219 Number of successful extensions: 4267 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4168 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4267 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
