ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart15b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PYC_PICPA (P78992) Pyruvate carboxylase (EC 6.4.1.1) (Pyruvic ca... 30 2.8
2YCC2_YEAST (P25562) Very hypothetical protein YCL022C 29 6.2

>PYC_PICPA (P78992) Pyruvate carboxylase (EC 6.4.1.1) (Pyruvic carboxylase)|
           (PCB)
          Length = 1189

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +3

Query: 297 RINLFNLLTSKVSLSSFLPFIDYK-----PFANNRGTVVFWRLLACLKSCF 434
           R+N  + +TS+ S+S+F+  +D +     P AN R    +W  +  L SCF
Sbjct: 792 RVNSMSGMTSQPSMSAFIASLDGEIETGIPEANAREIDAYWAEMRLLYSCF 842



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>YCC2_YEAST (P25562) Very hypothetical protein YCL022C|
          Length = 171

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 234 LNLNYTKPHFCFADFSALCLYRINLFNLLTSKVSLSSFLPFIDY 365
           LN  +  P +CF   S+LC    +LF+ + + +S S  LPF ++
Sbjct: 7   LNTRFFNP-YCFQPSSSLCRPSYSLFSGILACISSSKILPFENF 49


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,219,010
Number of Sequences: 219361
Number of extensions: 1256863
Number of successful extensions: 2811
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2811
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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