>PRP39_SCHPO (O74970) Pre-mRNA-processing protein prp39|
          Length = 612

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 201 FSSSAGAT*RIQHSYERCCV*CSIYDLFVSQHMR 100
           F    G   RI H YERC + C++YD F  ++ R
Sbjct: 291 FEEVEGDFQRICHLYERCLITCALYDEFWFRYAR 324

>STP2_YEAST (P38704) Zinc finger protein STP2|
          Length = 541

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 219 HYVCAKFSSSAGAT*RIQHSYERCCV*CSIYDLFVSQHMRCYNS 88
           HY  A+F      T  I+   +R    C  +D  +SQ +RC+ S
Sbjct: 207 HYCDARFRIRGYLTRHIKKHAKRKAYHCPFFDNSISQELRCHTS 250

>COAT3_MIMIV (Q5UQN7) Probable capsid protein 3|
          Length = 2156

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 9   HYRFHKNNNQNGDSLKLTPTHTWCYNKNCNISYV 110
           +Y+ +  +  NG+S K+TP +T  Y  N N+  V
Sbjct: 715 YYKVNNIHRYNGESYKMTPYNTRFYGLNDNLPLV 748

>UBR1_CAEEL (P91133) Ubiquitin-protein ligase E3 component N-recognin (EC|
           6.-.-.-) (Ubiquitin-protein ligase E3-alpha)
          Length = 1927

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = +1

Query: 199 ELCTYIVVICRKAGASSCRE----LVSSLHHFFVSLCREQ 306
           EL   ++V+C ++ A+  R     L++ +H++F  LCR +
Sbjct: 684 ELSLRVLVLCAQSNATLWRRNGFSLINQIHNYFSPLCRNE 723

>MET30_YEAST (P39014) F-box protein MET30 (Methionine requiring protein 30) (E3|
           ubiquitin ligase complex SCF(Met30) subunit MET30)
          Length = 640

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 6   PHYRFHKNNNQNGDSLKLTPTHTWCYNKN 92
           P Y F K   ++   ++ +PTHT CY ++
Sbjct: 87  PEYNFTKFCYRHNPDIQFSPTHTACYKQD 115

>Y693_HELHP (Q7U326) Hypothetical RNA methyltransferase HH_0693 (EC 2.1.1.-)|
          Length = 404

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +3

Query: 18  FHKNNNQNGDSLKLTPTHTWCYNKNCNISYVG*QTSHKYCIKHNISHKSVEFF 176
           +HK+ + + +SL L       Y  N NI  +G   +HK+ + ++I  + +  F
Sbjct: 146 YHKSLDSHWESLALKIQKELEYTLNTNIHIIGRSKNHKHILSNDIICEHLTLF 198

>HYD_DROME (P51592) Ubiquitin--protein ligase hyd (EC 6.3.2.-) (Protein|
            hyperplastic discs)
          Length = 2885

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 39   NGDSLKLTPTHTWCYNKNCNISYVG 113
            NG     +P H  CYN  C+ ++ G
Sbjct: 1201 NGSPADQSPLHVICYNDTCSFTWTG 1225

>OR5M9_HUMAN (Q8NGP3) Olfactory receptor 5M9 (Olfactory receptor OR11-190)|
          Length = 310

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -1

Query: 239 PAFLQITTMYVQSSAVQQELPEEFNTLMRDVVFDAVFMTCLLANI*DVTILVVTPSM 69
           P F  +T   +     +QEL   F      VVF AV+M  LL NI  + ++ ++P +
Sbjct: 2   PNFTDVTEFTLLGLTCRQELQVLFF-----VVFLAVYMITLLGNIGMIILISISPQL 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,916,001
Number of Sequences: 219361
Number of extensions: 770326
Number of successful extensions: 1658
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1658
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)