>gb|AC150698.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0072P10, complete sequence
          Length = 147540

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                            
Query: 295   tgtcgcgagcagaaggacttgagcctgtcaa 325
             |||||||||||||||||||||||||| ||||
Sbjct: 50954 tgtcgcgagcagaaggacttgagcctatcaa 50984



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 80    ttacaacaagaattgtaacatc 101
             ||||||||||||||||||||||
Sbjct: 50735 ttacaacaagaattgtaacatc 50756

>gb|AC134624.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041I05,
              complete sequence
          Length = 148785

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                             
Query: 295    tgtcgcgagcagaaggacttgagcctgtcaa 325
              |||||||||||||||||||||||||| ||||
Sbjct: 100870 tgtcgcgagcagaaggacttgagcctatcaa 100900



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 80     ttacaacaagaattgtaacatc 101
              ||||||||||||||||||||||
Sbjct: 100651 ttacaacaagaattgtaacatc 100672

>tpg|BK004863.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group)
            growth-regulating factor 8 (GRF8) gene, complete cds
          Length = 6000

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                           
Query: 295  tgtcgcgagcagaaggacttgagcctgtcaa 325
            |||||||||||||||||||||||||| ||||
Sbjct: 5134 tgtcgcgagcagaaggacttgagcctatcaa 5164



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 80   ttacaacaagaattgtaacatc 101
            ||||||||||||||||||||||
Sbjct: 4915 ttacaacaagaattgtaacatc 4936

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                               
Query: 295      tgtcgcgagcagaaggacttgagcctgtcaa 325
                |||||||||||||||||||||||||| ||||
Sbjct: 19695375 tgtcgcgagcagaaggacttgagcctatcaa 19695405



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 80       ttacaacaagaattgtaacatc 101
                ||||||||||||||||||||||
Sbjct: 19695156 ttacaacaagaattgtaacatc 19695177

>gb|AY110787.1| Zea mays CL39464_1 mRNA sequence
          Length = 690

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 292 ctgtgtcgcgagcagaaggacttgagcctgtcaag 326
           |||| |||| |||||||||||||||||||||||||
Sbjct: 216 ctgtatcgcaagcagaaggacttgagcctgtcaag 250

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                               
Query: 295      tgtcgcgagcagaaggacttgagcctgtcaa 325
                |||||||||||||||||||||||||| ||||
Sbjct: 19981232 tgtcgcgagcagaaggacttgagcctatcaa 19981262



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 80       ttacaacaagaattgtaacatc 101
                ||||||||||||||||||||||
Sbjct: 19981013 ttacaacaagaattgtaacatc 19981034

>gb|AC132119.2| Mus musculus BAC clone RP23-467E2 from chromosome 6, complete
            sequence
          Length = 161817

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 14   tagatttcataaaaataataat 35
            ||||||||||||||||||||||
Sbjct: 4125 tagatttcataaaaataataat 4104

>gb|AC124500.5| Mus musculus BAC clone RP24-69C19 from chromosome 6, complete sequence
          Length = 190224

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 14     tagatttcataaaaataataat 35
              ||||||||||||||||||||||
Sbjct: 167744 tagatttcataaaaataataat 167723

>gb|AY265854.1| Zea mays roothairless 1 (rth1) gene, complete cds
          Length = 14337

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 121   caagtcataaatactgcatcaaaca 145
             ||||||||||| |||||||||||||
Sbjct: 12469 caagtcataaagactgcatcaaaca 12445

>gb|AC151571.1| Latimeria menadoensis clone VMRC4-140H19, complete sequence
          Length = 187392

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 17    atttcataaaaataataatca 37
             |||||||||||||||||||||
Sbjct: 22131 atttcataaaaataataatca 22151

>gb|AE017308.1| Mycoplasma mobile 163K complete genome
          Length = 777079

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 17     atttcataaaaataataatca 37
              |||||||||||||||||||||
Sbjct: 744151 atttcataaaaataataatca 744131

>gb|AC125010.6| Mus musculus chromosome 10, clone RP24-117L12, complete sequence
          Length = 223541

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 302   agcagaaggacttgagcctgt 322
             |||||||||||||||||||||
Sbjct: 77704 agcagaaggacttgagcctgt 77684

>gb|AC102734.11| Mus musculus chromosome 6, clone RP24-222N4, complete sequence
          Length = 238453

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 12    tatagatttcataaaaataataatcaaaa 40
             |||| ||| ||||||||||||||||||||
Sbjct: 63906 tatatattccataaaaataataatcaaaa 63934

>gb|AC003080.1| Homo sapiens BAC clone GS1-368F15 from 7, complete sequence
          Length = 179531

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 280   ttctttgtctcgctgtgtcgc 300
             |||||||||||||||||||||
Sbjct: 94408 ttctttgtctcgctgtgtcgc 94388

>gb|DQ242736.1| Bombyx mori chromosome 12 microsatellite S1212-F sequence
          Length = 886

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 22  ataaaaataataatcaaaacg 42
           |||||||||||||||||||||
Sbjct: 592 ataaaaataataatcaaaacg 612

>gb|AC166747.4| Mus musculus chromosome 5, clone RP23-316L10, complete sequence
          Length = 189572

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     attccctaaaattgacacct 65
              ||||||||||||||||||||
Sbjct: 131479 attccctaaaattgacacct 131498

>gb|AC113224.3| Mus musculus strain C57BL6/J chromosome 6 clone RP23-99C24, complete
              sequence
          Length = 198436

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     agatttcataaaaataataa 34
              ||||||||||||||||||||
Sbjct: 119972 agatttcataaaaataataa 119953

>gb|AC024840.1| Caenorhabditis elegans cosmid Y59H11AL, complete sequence
          Length = 13547

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    cataaaaataataatcaaaa 40
             ||||||||||||||||||||
Sbjct: 11607 cataaaaataataatcaaaa 11626

>emb|AL513167.18| Human DNA sequence from clone RP11-79E21 on chromosome 9, complete
             sequence
          Length = 69767

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    gatttcataaaaataataat 35
             ||||||||||||||||||||
Sbjct: 23882 gatttcataaaaataataat 23863

>emb|AL353995.1|ATF12B17 Arabidopsis thaliana DNA chromosome 5, BAC clone F12B17 (ESSA project)
          Length = 113053

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   taacaaacaagtcataaata 133
             ||||||||||||||||||||
Sbjct: 23703 taacaaacaagtcataaata 23684

>emb|BX548018.9| Zebrafish DNA sequence from clone DKEY-23O18 in linkage group 14,
             complete sequence
          Length = 113040

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    atttcataaaaataataatc 36
             ||||||||||||||||||||
Sbjct: 55489 atttcataaaaataataatc 55508

>emb|BX470231.8| Zebrafish DNA sequence from clone CH211-63H10 in linkage group 3,
             complete sequence
          Length = 180778

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    tatagatttcataaaaataa 31
             ||||||||||||||||||||
Sbjct: 17099 tatagatttcataaaaataa 17080

>gb|AC098848.7| Homo sapiens chromosome 18, clone RP11-839G9, complete sequence
          Length = 189315

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    tcataaaaataataatcaaa 39
             ||||||||||||||||||||
Sbjct: 82017 tcataaaaataataatcaaa 81998

>gb|AC124957.18| Medicago truncatula clone mth2-15k14, complete sequence
          Length = 140624

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tatagatttcataaaaataa 31
             ||||||||||||||||||||
Sbjct: 11498 tatagatttcataaaaataa 11517

>gb|AC103409.2| Homo sapiens chromosome 8, clone RP11-1107H4, complete sequence
          Length = 210230

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 17     atttcataaaaataataatcaaaa 40
              |||||||||||||| |||||||||
Sbjct: 145476 atttcataaaaatagtaatcaaaa 145453

>emb|BX537322.5| Zebrafish DNA sequence from clone CH211-80L5 in linkage group 1,
             complete sequence
          Length = 65076

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    ttgacacctacacatacttg 76
             ||||||||||||||||||||
Sbjct: 41129 ttgacacctacacatacttg 41110

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 14       tagatttcataaaaataata 33
                ||||||||||||||||||||
Sbjct: 15070822 tagatttcataaaaataata 15070841

>gb|AC107304.5| Homo sapiens 3 BAC RP11-598F17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 179532

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 18     tttcataaaaataataatcaaaac 41
              |||||||||||||| |||||||||
Sbjct: 121997 tttcataaaaataagaatcaaaac 121974

>dbj|AP004816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0533E11
          Length = 150678

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    tagatttcataaaaataata 33
             ||||||||||||||||||||
Sbjct: 76603 tagatttcataaaaataata 76622

>emb|BX248085.10| Zebrafish DNA sequence from clone DKEY-225E17 in linkage group 25,
             complete sequence
          Length = 159178

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    ataaaaataataatcaaaac 41
             ||||||||||||||||||||
Sbjct: 20275 ataaaaataataatcaaaac 20256

>emb|BX649518.6| Zebrafish DNA sequence from clone CH211-162I8 in linkage group 4,
              complete sequence
          Length = 182631

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     ataaaaataataatcaaaac 41
              ||||||||||||||||||||
Sbjct: 132878 ataaaaataataatcaaaac 132859

>emb|BX005420.7| Zebrafish DNA sequence from clone CH211-163I12 in linkage group 25,
             complete sequence
          Length = 142324

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    ataaaaataataatcaaaac 41
             ||||||||||||||||||||
Sbjct: 63512 ataaaaataataatcaaaac 63531

>emb|AL929093.6| Zebrafish DNA sequence from clone CH211-149P10, complete sequence
          Length = 177248

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     ttgacacctacacatacttg 76
              ||||||||||||||||||||
Sbjct: 171181 ttgacacctacacatacttg 171200

>emb|CR954188.2| Medicago truncatula chromosome 5 clone mth2-193f16, COMPLETE SEQUENCE
          Length = 106631

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    cataaaaataataatcaaaa 40
             ||||||||||||||||||||
Sbjct: 18188 cataaaaataataatcaaaa 18207

>gb|AC000098.1|YUP8H12 Arabidopsis thaliana chromosome 1 YAC yUP8H12 complete sequence
          Length = 103576

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 14    tagatttcataaaaataataatca 37
             ||||||||| ||||||||||||||
Sbjct: 33734 tagatttcacaaaaataataatca 33757

>emb|AL929190.3| Zebrafish DNA sequence from clone DKEY-77N11, complete sequence
          Length = 150892

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     ttgacacctacacatacttg 76
              ||||||||||||||||||||
Sbjct: 103357 ttgacacctacacatacttg 103338

>emb|AL833777.11| Mouse DNA sequence from clone RP23-150D10 on chromosome X, complete
             sequence
          Length = 189554

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    acatctcatatgttggctaa 116
             ||||||||||||||||||||
Sbjct: 68176 acatctcatatgttggctaa 68195


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,083,536
Number of Sequences: 3902068
Number of extensions: 4083536
Number of successful extensions: 107158
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106977
Number of HSP's gapped (non-prelim): 181
length of query: 329
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 307
effective length of database: 17,147,199,772
effective search space: 5264190330004
effective search space used: 5264190330004
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)