ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart15a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1XTH_WHEAT (Q41542) Probable xyloglucan endotransglucosylase/hydr... 43 2e-04
2XTHA_PHAAN (Q41638) Xyloglucan endotransglucosylase/hydrolase pr... 37 0.017
3XTH_TOBAC (P93349) Probable xyloglucan endotransglucosylase/hydr... 35 0.037
4XTHB_PHAAN (Q8LNZ5) Probable xyloglucan endotransglucosylase/hyd... 35 0.064
5XTH_BRAOB (Q6YDN9) Xyloglucan endotransglucosylase/hydrolase pre... 34 0.11
6XTH5_ARATH (Q9XIW1) Probable xyloglucan endotransglucosylase/hyd... 33 0.14
7XTH4_ARATH (Q39099) Xyloglucan endotransglucosylase/hydrolase pr... 33 0.14
8XTH_SOYBN (Q39857) Probable xyloglucan endotransglucosylase/hydr... 33 0.24
9XTH1_LYCES (Q40144) Probable xyloglucan endotransglucosylase/hyd... 32 0.41
10SWC4_CRYNE (Q5KG22) SWR1-complex protein 4 28 7.8

>XTH_WHEAT (Q41542) Probable xyloglucan endotransglucosylase/hydrolase|
           precursor (EC 2.4.1.207)
          Length = 293

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = -3

Query: 292 CTDRERYAAMSPECKRDRDV 233
           CTD +RYAAM+PECKRDRDV
Sbjct: 274 CTDHDRYAAMAPECKRDRDV 293



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>XTHA_PHAAN (Q41638) Xyloglucan endotransglucosylase/hydrolase protein A|
           precursor (EC 2.4.1.207) (VaXTH1)
          Length = 292

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = -3

Query: 292 CTDRERYAAMSPECKRDRDV 233
           CTDR+RY+ + PEC RDRD+
Sbjct: 273 CTDRKRYSQVPPECTRDRDI 292



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>XTH_TOBAC (P93349) Probable xyloglucan endotransglucosylase/hydrolase protein|
           precursor (EC 2.4.1.207)
          Length = 295

 Score = 35.4 bits (80), Expect = 0.037
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -3

Query: 292 CTDRERYAAMSPECKRDRDV 233
           CTDR+RY  + PEC +DRD+
Sbjct: 276 CTDRKRYPTLPPECTKDRDI 295



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>XTHB_PHAAN (Q8LNZ5) Probable xyloglucan endotransglucosylase/hydrolase protein|
           B precursor (EC 2.4.1.207) (VaXTH2)
          Length = 293

 Score = 34.7 bits (78), Expect = 0.064
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -3

Query: 292 CTDRERYAAMSPECKRDRDV 233
           CTDR RY  + PEC+R+RD+
Sbjct: 274 CTDRTRYPQLPPECRRNRDI 293



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>XTH_BRAOB (Q6YDN9) Xyloglucan endotransglucosylase/hydrolase precursor (EC|
           2.4.1.207) (BobXET16A)
          Length = 295

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -3

Query: 292 CTDRERYAAMSPECKRDRDV 233
           CTDR R+  M  EC+RDRDV
Sbjct: 276 CTDRTRFPVMPAECRRDRDV 295



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>XTH5_ARATH (Q9XIW1) Probable xyloglucan endotransglucosylase/hydrolase protein|
           5 precursor (EC 2.4.1.207) (At-XTH5) (XTH-5)
          Length = 293

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 292 CTDRERYAAMSPECKRDRDV 233
           CTDR R+    PEC+RDRD+
Sbjct: 274 CTDRVRFPVPPPECRRDRDI 293



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>XTH4_ARATH (Q39099) Xyloglucan endotransglucosylase/hydrolase protein 4|
           precursor (EC 2.4.1.207) (At-XTH4) (XTH-4)
          Length = 296

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -3

Query: 292 CTDRERYAAMSPECKRDRD 236
           CTDR R+  M  ECKRDRD
Sbjct: 277 CTDRTRFPVMPAECKRDRD 295



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>XTH_SOYBN (Q39857) Probable xyloglucan endotransglucosylase/hydrolase|
           precursor (EC 2.4.1.207) (Fragment)
          Length = 295

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 14/21 (66%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
 Frame = -3

Query: 292 CTDRERYAAMSP-ECKRDRDV 233
           CTD +RY  +SP ECKRDRD+
Sbjct: 275 CTDTKRYPHISPPECKRDRDI 295



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>XTH1_LYCES (Q40144) Probable xyloglucan endotransglucosylase/hydrolase 1|
           precursor (EC 2.4.1.207) (LeXTH1)
          Length = 296

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 292 CTDRERYAAMSPECKRDRDV 233
           CTD+ RY    PEC +DRD+
Sbjct: 277 CTDKARYPVPPPECTKDRDI 296



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>SWC4_CRYNE (Q5KG22) SWR1-complex protein 4|
          Length = 463

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 280 ERYAAMSPEC-KRDRDV*A*YTLLTTTDVKDRYYSSC 173
           +RYA +SPE  KR R V          D+KDRYY+ C
Sbjct: 162 DRYAYVSPEGEKRKRSV---------EDMKDRYYTIC 189


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,751,368
Number of Sequences: 219361
Number of extensions: 499827
Number of successful extensions: 1090
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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