ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart15a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan transfe... 531 e-148
2dbj|D16457.1|WHTEXT4 Wheat mRNA for endo-xyloglucan transferase,... 86 7e-14
3gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome... 76 7e-11
4gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome... 76 7e-11
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 76 7e-11
6dbj|AK071574.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 7e-11
7dbj|AK061093.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 7e-11
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 76 7e-11
9gb|AY104207.1| Zea mays PCO111099 mRNA sequence 46 0.062
10gb|AC152829.2| Ornithorhynchus anatinus BAC clone OABb-466A1 fro... 44 0.25
11gb|AE001416.2| Plasmodium falciparum 3D7 chromosome 2 section 53... 42 0.97
12gb|AC093368.4| Homo sapiens chromosome 8, clone RP11-783P22, com... 42 0.97
13gb|AC104576.5| Homo sapiens chromosome 8, clone RP11-790L1, comp... 42 0.97
14gb|AC140216.3| Mus musculus BAC clone RP23-276B20 from chromosom... 40 3.8
15dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 40 3.8
16gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold 40 3.8
17gb|AC161058.2| Mus musculus BAC clone RP23-205J6 from chromosome... 40 3.8

>emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan transferase
          Length = 1175

 Score =  531 bits (268), Expect = e-148
 Identities = 274/276 (99%)
 Strand = Plus / Minus

                                                                        
Query: 19   gagcgaatatgattattattatagcatacttagttggatcatgcgtgagcaatcagaaga 78
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1175 gagcgaatatgattattattatagcatacttagttggatcatgcgtgagcaatcagaaga 1116

                                                                        
Query: 79   ataataaagcacgcatgagcatacagacacgtagggatacaaattcctcgtactaataca 138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1115 ataataaagcacgcatgagcatacagacacgtagggatacaaattcctcgtactagtaca 1056

                                                                        
Query: 139  tctcatcgaccgcaccgcgaccgggggtacaacaacaactactgtagtagcggtccttta 198
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1055 tctcatcgaccgcaccgcgaccggtggtacaacaacaactactgtagtagcggtccttta 996

                                                                        
Query: 199  catcagtagtagtaagtaaagtatatcacgctcagacgtcgcggtcgcgtttgcactcgg 258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995  catcagtagtagtaagtaaagtatatcacgctcagacgtcgcggtcgcgtttgcactcgg 936

                                                
Query: 259  gcgacatggcggcgtatcgttcgcggtctgtgcagt 294
            ||||||||||||||||||||||||||||||||||||
Sbjct: 935  gcgacatggcggcgtatcgttcgcggtctgtgcagt 900



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>dbj|D16457.1|WHTEXT4 Wheat mRNA for endo-xyloglucan transferase, complete cds
          Length = 1088

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                        
Query: 109  gtagggatacaaattcctcgtactaatacatctcatcgaccgcaccgcgaccgggggtac 168
            ||||||||||||||||||||||||| ||  ||||| |||||||||||||||| | || ||
Sbjct: 1039 gtagggatacaaattcctcgtactactaggtctcagcgaccgcaccgcgaccagcggcac 980

                       
Query: 169  aacaacaacta 179
            |||||||||||
Sbjct: 979  aacaacaacta 969



 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                       
Query: 229 ctcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcgtatcgttcgcggtctg 288
           ||||||||||||||||||| |||||||| |||| |||||||||||| || ||| |||| |
Sbjct: 926 ctcagacgtcgcggtcgcgcttgcactctggcgccatggcggcgtagcggtcgtggtcgg 867

                 
Query: 289 tgcagt 294
           ||||||
Sbjct: 866 tgcagt 861



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>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17,
              complete sequence
          Length = 148829

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                        
Query: 229    ctcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcgtatcgttcgcggtc 286
              ||||| ||||||||||||| | |||||||||||||||||||| ||| |||||||||||
Sbjct: 115781 ctcaggcgtcgcggtcgcggtggcactcgggcgacatggcggggtagcgttcgcggtc 115724



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>gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0007D07, complete sequence
          Length = 133930

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                       
Query: 229   ctcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcgtatcgttcgcggtc 286
             ||||| ||||||||||||| | |||||||||||||||||||| ||| |||||||||||
Sbjct: 15400 ctcaggcgtcgcggtcgcggtggcactcgggcgacatggcggggtagcgttcgcggtc 15343



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                          
Query: 229      ctcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcgtatcgttcgcggtc 286
                ||||| ||||||||||||| | |||||||||||||||||||| ||| |||||||||||
Sbjct: 19012583 ctcaggcgtcgcggtcgcggtggcactcgggcgacatggcggggtagcgttcgcggtc 19012526



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>dbj|AK071574.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105D14, full
           insert sequence
          Length = 977

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                     
Query: 229 ctcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcgtatcgttcgcggtc 286
           ||||| ||||||||||||| | |||||||||||||||||||| ||| |||||||||||
Sbjct: 916 ctcaggcgtcgcggtcgcggtggcactcgggcgacatggcggggtagcgttcgcggtc 859



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>dbj|AK061093.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-A02, full
           insert sequence
          Length = 1053

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                     
Query: 229 ctcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcgtatcgttcgcggtc 286
           ||||| ||||||||||||| | |||||||||||||||||||| ||| |||||||||||
Sbjct: 913 ctcaggcgtcgcggtcgcggtggcactcgggcgacatggcggggtagcgttcgcggtc 856



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                          
Query: 229      ctcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcgtatcgttcgcggtc 286
                ||||| ||||||||||||| | |||||||||||||||||||| ||| |||||||||||
Sbjct: 19171232 ctcaggcgtcgcggtcgcggtggcactcgggcgacatggcggggtagcgttcgcggtc 19171175



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>gb|AY104207.1| Zea mays PCO111099 mRNA sequence
          Length = 1202

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 230 tcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcg 272
           ||||||||||||||||||   ||||||||||| || |||||||
Sbjct: 941 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcg 899



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>gb|AC152829.2| Ornithorhynchus anatinus BAC clone OABb-466A1 from chromosome unknown,
             complete sequence
          Length = 160523

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 27    atgattattattatagcatact 48
             ||||||||||||||||||||||
Sbjct: 33686 atgattattattatagcatact 33665



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>gb|AE001416.2| Plasmodium falciparum 3D7 chromosome 2 section 53 of 73 of the
            complete sequence
          Length = 17429

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 24   aatatgattattattatagca 44
            |||||||||||||||||||||
Sbjct: 2013 aatatgattattattatagca 2033



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>gb|AC093368.4| Homo sapiens chromosome 8, clone RP11-783P22, complete sequence
          Length = 158535

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 65    gagcaatcagaagaataataa 85
             |||||||||||||||||||||
Sbjct: 24758 gagcaatcagaagaataataa 24738



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>gb|AC104576.5| Homo sapiens chromosome 8, clone RP11-790L1, complete sequence
          Length = 174399

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 65    gagcaatcagaagaataataa 85
             |||||||||||||||||||||
Sbjct: 43813 gagcaatcagaagaataataa 43833



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>gb|AC140216.3| Mus musculus BAC clone RP23-276B20 from chromosome 5, complete
            sequence
          Length = 194560

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 88   cacgcatgagcatacagaca 107
            ||||||||||||||||||||
Sbjct: 9765 cacgcatgagcatacagaca 9784



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>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 56      atcatgcgtgagcaatcaga 75
               ||||||||||||||||||||
Sbjct: 1688270 atcatgcgtgagcaatcaga 1688251



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>gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold
          Length = 501879

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    tacagacacgtagggataca 119
              ||||||||||||||||||||
Sbjct: 498467 tacagacacgtagggataca 498448



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>gb|AC161058.2| Mus musculus BAC clone RP23-205J6 from chromosome 5, complete sequence
          Length = 222180

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    cacgcatgagcatacagaca 107
             ||||||||||||||||||||
Sbjct: 82293 cacgcatgagcatacagaca 82274


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,626,184
Number of Sequences: 3902068
Number of extensions: 3626184
Number of successful extensions: 45375
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45316
Number of HSP's gapped (non-prelim): 59
length of query: 294
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 272
effective length of database: 17,147,199,772
effective search space: 4664038337984
effective search space used: 4664038337984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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