Clone Name | rbart15a08 |
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Clone Library Name | barley_pub |
>emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan transferase Length = 1175 Score = 531 bits (268), Expect = e-148 Identities = 274/276 (99%) Strand = Plus / Minus Query: 19 gagcgaatatgattattattatagcatacttagttggatcatgcgtgagcaatcagaaga 78 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1175 gagcgaatatgattattattatagcatacttagttggatcatgcgtgagcaatcagaaga 1116 Query: 79 ataataaagcacgcatgagcatacagacacgtagggatacaaattcctcgtactaataca 138 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1115 ataataaagcacgcatgagcatacagacacgtagggatacaaattcctcgtactagtaca 1056 Query: 139 tctcatcgaccgcaccgcgaccgggggtacaacaacaactactgtagtagcggtccttta 198 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1055 tctcatcgaccgcaccgcgaccggtggtacaacaacaactactgtagtagcggtccttta 996 Query: 199 catcagtagtagtaagtaaagtatatcacgctcagacgtcgcggtcgcgtttgcactcgg 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 995 catcagtagtagtaagtaaagtatatcacgctcagacgtcgcggtcgcgtttgcactcgg 936 Query: 259 gcgacatggcggcgtatcgttcgcggtctgtgcagt 294 |||||||||||||||||||||||||||||||||||| Sbjct: 935 gcgacatggcggcgtatcgttcgcggtctgtgcagt 900
>dbj|D16457.1|WHTEXT4 Wheat mRNA for endo-xyloglucan transferase, complete cds Length = 1088 Score = 85.7 bits (43), Expect = 7e-14 Identities = 64/71 (90%) Strand = Plus / Minus Query: 109 gtagggatacaaattcctcgtactaatacatctcatcgaccgcaccgcgaccgggggtac 168 ||||||||||||||||||||||||| || ||||| |||||||||||||||| | || || Sbjct: 1039 gtagggatacaaattcctcgtactactaggtctcagcgaccgcaccgcgaccagcggcac 980 Query: 169 aacaacaacta 179 ||||||||||| Sbjct: 979 aacaacaacta 969 Score = 75.8 bits (38), Expect = 7e-11 Identities = 59/66 (89%) Strand = Plus / Minus Query: 229 ctcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcgtatcgttcgcggtctg 288 ||||||||||||||||||| |||||||| |||| |||||||||||| || ||| |||| | Sbjct: 926 ctcagacgtcgcggtcgcgcttgcactctggcgccatggcggcgtagcggtcgtggtcgg 867 Query: 289 tgcagt 294 |||||| Sbjct: 866 tgcagt 861
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17, complete sequence Length = 148829 Score = 75.8 bits (38), Expect = 7e-11 Identities = 53/58 (91%) Strand = Plus / Minus Query: 229 ctcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcgtatcgttcgcggtc 286 ||||| ||||||||||||| | |||||||||||||||||||| ||| ||||||||||| Sbjct: 115781 ctcaggcgtcgcggtcgcggtggcactcgggcgacatggcggggtagcgttcgcggtc 115724
>gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007D07, complete sequence Length = 133930 Score = 75.8 bits (38), Expect = 7e-11 Identities = 53/58 (91%) Strand = Plus / Minus Query: 229 ctcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcgtatcgttcgcggtc 286 ||||| ||||||||||||| | |||||||||||||||||||| ||| ||||||||||| Sbjct: 15400 ctcaggcgtcgcggtcgcggtggcactcgggcgacatggcggggtagcgttcgcggtc 15343
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 75.8 bits (38), Expect = 7e-11 Identities = 53/58 (91%) Strand = Plus / Minus Query: 229 ctcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcgtatcgttcgcggtc 286 ||||| ||||||||||||| | |||||||||||||||||||| ||| ||||||||||| Sbjct: 19012583 ctcaggcgtcgcggtcgcggtggcactcgggcgacatggcggggtagcgttcgcggtc 19012526
>dbj|AK071574.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105D14, full insert sequence Length = 977 Score = 75.8 bits (38), Expect = 7e-11 Identities = 53/58 (91%) Strand = Plus / Minus Query: 229 ctcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcgtatcgttcgcggtc 286 ||||| ||||||||||||| | |||||||||||||||||||| ||| ||||||||||| Sbjct: 916 ctcaggcgtcgcggtcgcggtggcactcgggcgacatggcggggtagcgttcgcggtc 859
>dbj|AK061093.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-A02, full insert sequence Length = 1053 Score = 75.8 bits (38), Expect = 7e-11 Identities = 53/58 (91%) Strand = Plus / Minus Query: 229 ctcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcgtatcgttcgcggtc 286 ||||| ||||||||||||| | |||||||||||||||||||| ||| ||||||||||| Sbjct: 913 ctcaggcgtcgcggtcgcggtggcactcgggcgacatggcggggtagcgttcgcggtc 856
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 75.8 bits (38), Expect = 7e-11 Identities = 53/58 (91%) Strand = Plus / Minus Query: 229 ctcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcgtatcgttcgcggtc 286 ||||| ||||||||||||| | |||||||||||||||||||| ||| ||||||||||| Sbjct: 19171232 ctcaggcgtcgcggtcgcggtggcactcgggcgacatggcggggtagcgttcgcggtc 19171175
>gb|AY104207.1| Zea mays PCO111099 mRNA sequence Length = 1202 Score = 46.1 bits (23), Expect = 0.062 Identities = 38/43 (88%) Strand = Plus / Minus Query: 230 tcagacgtcgcggtcgcgtttgcactcgggcgacatggcggcg 272 |||||||||||||||||| ||||||||||| || ||||||| Sbjct: 941 tcagacgtcgcggtcgcgggcgcactcgggcggcacggcggcg 899
>gb|AC152829.2| Ornithorhynchus anatinus BAC clone OABb-466A1 from chromosome unknown, complete sequence Length = 160523 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 27 atgattattattatagcatact 48 |||||||||||||||||||||| Sbjct: 33686 atgattattattatagcatact 33665
>gb|AE001416.2| Plasmodium falciparum 3D7 chromosome 2 section 53 of 73 of the complete sequence Length = 17429 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 aatatgattattattatagca 44 ||||||||||||||||||||| Sbjct: 2013 aatatgattattattatagca 2033
>gb|AC093368.4| Homo sapiens chromosome 8, clone RP11-783P22, complete sequence Length = 158535 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 65 gagcaatcagaagaataataa 85 ||||||||||||||||||||| Sbjct: 24758 gagcaatcagaagaataataa 24738
>gb|AC104576.5| Homo sapiens chromosome 8, clone RP11-790L1, complete sequence Length = 174399 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 65 gagcaatcagaagaataataa 85 ||||||||||||||||||||| Sbjct: 43813 gagcaatcagaagaataataa 43833
>gb|AC140216.3| Mus musculus BAC clone RP23-276B20 from chromosome 5, complete sequence Length = 194560 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 cacgcatgagcatacagaca 107 |||||||||||||||||||| Sbjct: 9765 cacgcatgagcatacagaca 9784
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 atcatgcgtgagcaatcaga 75 |||||||||||||||||||| Sbjct: 1688270 atcatgcgtgagcaatcaga 1688251
>gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold Length = 501879 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 tacagacacgtagggataca 119 |||||||||||||||||||| Sbjct: 498467 tacagacacgtagggataca 498448
>gb|AC161058.2| Mus musculus BAC clone RP23-205J6 from chromosome 5, complete sequence Length = 222180 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cacgcatgagcatacagaca 107 |||||||||||||||||||| Sbjct: 82293 cacgcatgagcatacagaca 82274 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,626,184 Number of Sequences: 3902068 Number of extensions: 3626184 Number of successful extensions: 45375 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45316 Number of HSP's gapped (non-prelim): 59 length of query: 294 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 272 effective length of database: 17,147,199,772 effective search space: 4664038337984 effective search space used: 4664038337984 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)