>gb|AC148017.3| Mus musculus BAC clone RP23-56O18 from chromosome 18, complete sequence
          Length = 152497

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 22    gaaaacagagggaataaaagaaggaa 47
             |||||||||||||| |||||||||||
Sbjct: 63791 gaaaacagagggaagaaaagaaggaa 63816

>gb|AC164602.7| Mus musculus chromosome 1, clone RP24-364G11, complete sequence
          Length = 205889

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     cagagggaataaaagaagga 46
              ||||||||||||||||||||
Sbjct: 146362 cagagggaataaaagaagga 146343

>gb|AC162163.2| Mus musculus chromosome 1, clone RP23-258N15, complete sequence
          Length = 176915

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     cagagggaataaaagaagga 46
              ||||||||||||||||||||
Sbjct: 148950 cagagggaataaaagaagga 148969

>gb|AC109239.8| Mus musculus chromosome 3, clone RP23-191N23, complete sequence
          Length = 187162

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    aaacagagggaataaaagaa 43
             ||||||||||||||||||||
Sbjct: 71182 aaacagagggaataaaagaa 71201

>gb|AC146377.5| Pan troglodytes BAC clone RP43-79B6 from 7, complete sequence
          Length = 195459

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 93    caccttgaattctgttggcctgaa 116
             |||||||||| |||||||||||||
Sbjct: 19757 caccttgaatactgttggcctgaa 19734

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 147     gacgagcagcaccagcagcg 166
               ||||||||||||||||||||
Sbjct: 4193940 gacgagcagcaccagcagcg 4193959

>gb|AC162913.3| Mus musculus BAC clone RP24-409P22 from chromosome 3, complete sequence
          Length = 175922

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     aaacagagggaataaaagaa 43
              ||||||||||||||||||||
Sbjct: 119678 aaacagagggaataaaagaa 119697

>gb|AC162691.2| Mus musculus chromosome 1, clone RP23-263K13, complete sequence
          Length = 173327

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   atcacatgacaaactgcatt 135
             ||||||||||||||||||||
Sbjct: 20654 atcacatgacaaactgcatt 20635

>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 59     tttcctctccaaactccaaagata 82
              ||||||||||||||||||| ||||
Sbjct: 562895 tttcctctccaaactccaaggata 562872

>gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete genome
          Length = 859006

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   agcagcaccagcagcgtcat 170
             ||||||||||||||||||||
Sbjct: 82959 agcagcaccagcagcgtcat 82940

>emb|BX664745.13| Zebrafish DNA sequence from clone DKEY-242A8 in linkage group 23,
             complete sequence
          Length = 261934

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    aaaacagagggaataaaaga 42
             ||||||||||||||||||||
Sbjct: 47545 aaaacagagggaataaaaga 47564

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 23       aaaacagagggaataaaaga 42
                ||||||||||||||||||||
Sbjct: 15175948 aaaacagagggaataaaaga 15175929

>dbj|AP004395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0030H06
          Length = 147890

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    aaaacagagggaataaaaga 42
             ||||||||||||||||||||
Sbjct: 42697 aaaacagagggaataaaaga 42678

>gb|AC131750.3| Mus musculus BAC clone RP23-34F5 from 1, complete sequence
          Length = 190325

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   atcacatgacaaactgcatt 135
             ||||||||||||||||||||
Sbjct: 77192 atcacatgacaaactgcatt 77211

>gb|AY168440.1| Oryza sativa (indica cultivar-group) IPK (ipk) gene, complete cds
          Length = 5207

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 21   tgaaaacagagggaataaaagaa 43
            ||||||||||||||| |||||||
Sbjct: 4779 tgaaaacagagggaaaaaaagaa 4801

>ref|XM_601784.2| PREDICTED: Bos taurus similar to 5-hydroxytryptamine 5B receptor
           (5-HT-5B) (Serotonin receptor 5B) (MR22) (LOC523484),
           partial mRNA
          Length = 789

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 151 agcagcaccagcagcgtca 169
           |||||||||||||||||||
Sbjct: 197 agcagcaccagcagcgtca 179

>ref|XM_423802.1| PREDICTED: Gallus gallus similar to ORM1-like 3; ORM1 (S.
            cerevisiae)-like 3 (LOC426131), mRNA
          Length = 2089

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 144  gctgacgagcagcaccagcagcg 166
            ||||| |||||||||||||||||
Sbjct: 1603 gctgaggagcagcaccagcagcg 1625

>gb|AC079216.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-353E8, complete
              sequence
          Length = 221748

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 24     aaacagagggaataaaaga 42
              |||||||||||||||||||
Sbjct: 105693 aaacagagggaataaaaga 105675

>gb|AC073873.7| Homo sapiens BAC clone RP11-575M4 from 7, complete sequence
          Length = 188992

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 29     gagggaataaaagaaggaa 47
              |||||||||||||||||||
Sbjct: 151361 gagggaataaaagaaggaa 151379

>gb|AC125088.4| Mus musculus BAC clone RP24-152J3 from chromosome 12, complete sequence
          Length = 149712

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 142   aagctgacgagcagcacca 160
             |||||||||||||||||||
Sbjct: 49874 aagctgacgagcagcacca 49856

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 149     cgagcagcaccagcagcgt 167
               |||||||||||||||||||
Sbjct: 3322300 cgagcagcaccagcagcgt 3322282

>emb|AL356473.11| Human DNA sequence from clone RP11-560O20 on chromosome 6 Contains a
             nucleoporin 50kD (NUP50) pseudogene  and a CpG island,
             complete sequence
          Length = 203182

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 83    aaccgagatccaccttgaa 101
             |||||||||||||||||||
Sbjct: 24639 aaccgagatccaccttgaa 24657

>emb|AL161651.13| Human DNA sequence from clone RP11-449I17 on chromosome 10 Contains the
             5' end of a novel gene (DKFZp434I138) (FLJ10486), a
             pseudogene similar to part of dynamin 1 (DNM1), a golgin
             pseudogene, a MKI67 (FHA domain) interacting nucleolar
             phosphoprotein (MKI67IP) pseudogene, a cyclin D3 (CCND3)
             pseudogene, the MAP3K8 gene for mitogen-activated protein
             kinase kinase kinase 8, a heterogeneous nuclear
             ribonucleoprotein A1 (HRPA1) pseudogene, a pseudogene
             similar to part of SIN3 homolog A transcriptional
             regulator (yeast) (SIN3A) and a CpG island, complete
             sequence
          Length = 211627

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 147   gacgagcagcaccagcagc 165
             |||||||||||||||||||
Sbjct: 58346 gacgagcagcaccagcagc 58364

>emb|AL022319.2|HS172B20 Human DNA sequence from clone RP1-172B20 on chromosome 22q12.3-13.1
              Contains the 3' part of the CACNA1I gene for
              voltage-dependent calcium channel, alpha 1I subunit, ESTs,
              STSs, GSSs and a putative CpG island, complete sequence
          Length = 213721

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 31     gggaataaaagaaggaaca 49
              |||||||||||||||||||
Sbjct: 156095 gggaataaaagaaggaaca 156113

>ref|NM_001004391.1| Gallus gallus cadherin 4, type 1, R-cadherin (retinal) (CDH4), mRNA
          Length = 2954

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 147 gacgagcagcaccagcagc 165
           |||||||||||||||||||
Sbjct: 195 gacgagcagcaccagcagc 177

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 151     agcagcaccagcagcgtca 169
               |||||||||||||||||||
Sbjct: 3912958 agcagcaccagcagcgtca 3912976

>emb|BX510917.5| Zebrafish DNA sequence from clone CH211-250O15 in linkage group 5,
             complete sequence
          Length = 140129

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 32    ggaataaaagaaggaacat 50
             |||||||||||||||||||
Sbjct: 69611 ggaataaaagaaggaacat 69593

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 21      tgaaaacagagggaataaaagaa 43
               ||||||||||||||| |||||||
Sbjct: 7114960 tgaaaacagagggaaaaaaagaa 7114982

>emb|AL954172.9| Zebrafish DNA sequence from clone CH211-220D9 in linkage group 8,
            complete sequence
          Length = 201525

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 119  acatgacaaactgcattgc 137
            |||||||||||||||||||
Sbjct: 6719 acatgacaaactgcattgc 6737

>dbj|D14459.1|CHKRCG Gallus gallus mRNA for R-cadherin, complete cds
          Length = 2954

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 147 gacgagcagcaccagcagc 165
           |||||||||||||||||||
Sbjct: 195 gacgagcagcaccagcagc 177

>gb|AC163630.5| Mus musculus BAC clone RP23-139M2 from chromosome 16, complete sequence
          Length = 231703

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 19     attgaaaacagagggaata 37
              |||||||||||||||||||
Sbjct: 157061 attgaaaacagagggaata 157079

>gb|AC173707.2| Mus musculus BAC clone RP23-296A12 from chromosome 16, complete sequence
          Length = 171458

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 19     attgaaaacagagggaata 37
              |||||||||||||||||||
Sbjct: 132885 attgaaaacagagggaata 132867

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 21      tgaaaacagagggaataaaagaa 43
               ||||||||||||||| |||||||
Sbjct: 7114839 tgaaaacagagggaaaaaaagaa 7114861

>emb|BX842241.1|CNS0B0PM Oryza sativa chromosome 12, . Partial sequence from chromosome 12 of
             cultivar Nipponbare of ssp. japonica of Oryza sativa
             (rice), complete sequence
          Length = 45687

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 21    tgaaaacagagggaataaaagaa 43
             ||||||||||||||| |||||||
Sbjct: 23260 tgaaaacagagggaaaaaaagaa 23282


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,710,803
Number of Sequences: 3902068
Number of extensions: 1710803
Number of successful extensions: 130203
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129744
Number of HSP's gapped (non-prelim): 459
length of query: 178
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 156
effective length of database: 17,147,199,772
effective search space: 2674963164432
effective search space used: 2674963164432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)