ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart15a01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK104287.1| Oryza sativa (japonica cultivar-group) cDNA clon... 190 3e-45
2dbj|AK104170.1| Oryza sativa (japonica cultivar-group) cDNA clon... 190 3e-45
3dbj|AK069502.1| Oryza sativa (japonica cultivar-group) cDNA clon... 190 3e-45
4dbj|AK059316.1| Oryza sativa (japonica cultivar-group) cDNA clon... 190 3e-45
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 178 1e-41
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 178 1e-41
7emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa... 178 1e-41
8gb|AY105057.1| Zea mays PCO108332 mRNA sequence 113 6e-22
9gb|BT018742.1| Zea mays clone EL01N0521E02.d mRNA sequence 98 3e-17
10tpg|BK005598.1| TPA: TPA_exp: Homo sapiens NSP (NSP) gene, compl... 48 0.029
11gb|AC004702.1|AC004702 Homo sapiens chromosome 17, clone HRPC836... 48 0.029
12emb|AL953843.6| Zebrafish DNA sequence from clone DKEY-42P8 in l... 42 1.8
13emb|AL807832.6| Mouse DNA sequence from clone RP23-198D21 on chr... 42 1.8
14gb|DQ455589.1| Phaseolus vulgaris ubiqutin ligase mRNA, partial cds 40 6.9
15gb|AC126932.4| Mus musculus BAC clone RP24-80G20 from chromosome... 40 6.9
16ref|XM_948397.1| Theileria annulata strain Ankara signal recogni... 40 6.9
17ref|XM_503706.1| Yarrowia lipolytica CLIB122, YALI0E08822g predi... 40 6.9
18emb|BX530083.11| Zebrafish DNA sequence from clone DKEY-3L17 in ... 40 6.9
19emb|CR354599.10| Zebrafish DNA sequence from clone CH211-259K16 ... 40 6.9
20dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 40 6.9
21dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
22gb|AC019064.6| Homo sapiens BAC clone RP11-153O16 from 2, comple... 40 6.9
23dbj|AP003876.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
24emb|BX255962.9| Zebrafish DNA sequence from clone CH211-269C21 i... 40 6.9
25emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 40 6.9
26dbj|AP004916.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 6.9 
>dbj|AK104287.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-D07, full
           insert sequence
          Length = 1252

 Score =  190 bits (96), Expect = 3e-45
 Identities = 138/152 (90%)
 Strand = Plus / Minus

                                                                       
Query: 363 gtcgacggagaactgcttcctgataaatctgcaggccgcgacgtcgatcgagtgttgtat 422
           ||||| ||||||||||||||||||||||| |||||||| || ||||||||||| ||||| 
Sbjct: 952 gtcgagggagaactgcttcctgataaatccgcaggccgtgatgtcgatcgagtattgtac 893

                                                                       
Query: 423 gagttgcaatggctgcacttatggccaaccacgtggaagtccacttctgagactttgttg 482
           |||||||| ||||||||||| ||||||| ||| |||||||||||||||||||| ||||||
Sbjct: 892 gagttgcagtggctgcacttgtggccaatcacatggaagtccacttctgagaccttgttg 833

                                           
Query: 483 cagtcattgcaaagaacccaaaccttgtaacg 514
           |||||||| || || |||||||||||||||||
Sbjct: 832 cagtcattacagagcacccaaaccttgtaacg 801
to top
>dbj|AK104170.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F09, full
           insert sequence
          Length = 1203

 Score =  190 bits (96), Expect = 3e-45
 Identities = 138/152 (90%)
 Strand = Plus / Minus

                                                                       
Query: 363 gtcgacggagaactgcttcctgataaatctgcaggccgcgacgtcgatcgagtgttgtat 422
           ||||| ||||||||||||||||||||||| |||||||| || ||||||||||| ||||| 
Sbjct: 955 gtcgagggagaactgcttcctgataaatccgcaggccgtgatgtcgatcgagtattgtac 896

                                                                       
Query: 423 gagttgcaatggctgcacttatggccaaccacgtggaagtccacttctgagactttgttg 482
           |||||||| ||||||||||| ||||||| ||| |||||||||||||||||||| ||||||
Sbjct: 895 gagttgcagtggctgcacttgtggccaatcacatggaagtccacttctgagaccttgttg 836

                                           
Query: 483 cagtcattgcaaagaacccaaaccttgtaacg 514
           |||||||| || || |||||||||||||||||
Sbjct: 835 cagtcattacagagcacccaaaccttgtaacg 804
to top
>dbj|AK069502.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020D18, full
           insert sequence
          Length = 1306

 Score =  190 bits (96), Expect = 3e-45
 Identities = 138/152 (90%)
 Strand = Plus / Minus

                                                                       
Query: 363 gtcgacggagaactgcttcctgataaatctgcaggccgcgacgtcgatcgagtgttgtat 422
           ||||| ||||||||||||||||||||||| |||||||| || ||||||||||| ||||| 
Sbjct: 974 gtcgagggagaactgcttcctgataaatccgcaggccgtgatgtcgatcgagtattgtac 915

                                                                       
Query: 423 gagttgcaatggctgcacttatggccaaccacgtggaagtccacttctgagactttgttg 482
           |||||||| ||||||||||| ||||||| ||| |||||||||||||||||||| ||||||
Sbjct: 914 gagttgcagtggctgcacttgtggccaatcacatggaagtccacttctgagaccttgttg 855

                                           
Query: 483 cagtcattgcaaagaacccaaaccttgtaacg 514
           |||||||| || || |||||||||||||||||
Sbjct: 854 cagtcattacagagcacccaaaccttgtaacg 823
to top
>dbj|AK059316.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-H03, full
           insert sequence
          Length = 1334

 Score =  190 bits (96), Expect = 3e-45
 Identities = 138/152 (90%)
 Strand = Plus / Minus

                                                                       
Query: 363 gtcgacggagaactgcttcctgataaatctgcaggccgcgacgtcgatcgagtgttgtat 422
           ||||| ||||||||||||||||||||||| |||||||| || ||||||||||| ||||| 
Sbjct: 952 gtcgagggagaactgcttcctgataaatccgcaggccgtgatgtcgatcgagtattgtac 893

                                                                       
Query: 423 gagttgcaatggctgcacttatggccaaccacgtggaagtccacttctgagactttgttg 482
           |||||||| ||||||||||| ||||||| ||| |||||||||||||||||||| ||||||
Sbjct: 892 gagttgcagtggctgcacttgtggccaatcacatggaagtccacttctgagaccttgttg 833

                                           
Query: 483 cagtcattgcaaagaacccaaaccttgtaacg 514
           |||||||| || || |||||||||||||||||
Sbjct: 832 cagtcattacagagcacccaaaccttgtaacg 801
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  178 bits (90), Expect = 1e-41
 Identities = 135/150 (90%)
 Strand = Plus / Minus

                                                                            
Query: 363      gtcgacggagaactgcttcctgataaatctgcaggccgcgacgtcgatcgagtgttgtat 422
                ||||| ||||||||||||||||||||||| |||||||| || ||||||||||| ||||| 
Sbjct: 21493285 gtcgagggagaactgcttcctgataaatccgcaggccgtgatgtcgatcgagtattgtac 21493226

                                                                            
Query: 423      gagttgcaatggctgcacttatggccaaccacgtggaagtccacttctgagactttgttg 482
                |||||||| ||||||||||| ||||||| ||| |||||||||||||||||||| ||||||
Sbjct: 21493225 gagttgcagtggctgcacttgtggccaatcacatggaagtccacttctgagaccttgttg 21493166

                                              
Query: 483      cagtcattgcaaagaacccaaaccttgtaa 512
                |||||||| || || |||||||||| ||||
Sbjct: 21493165 cagtcattacagagcacccaaacctagtaa 21493136
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  178 bits (90), Expect = 1e-41
 Identities = 135/150 (90%)
 Strand = Plus / Minus

                                                                            
Query: 363      gtcgacggagaactgcttcctgataaatctgcaggccgcgacgtcgatcgagtgttgtat 422
                ||||| ||||||||||||||||||||||| |||||||| || ||||||||||| ||||| 
Sbjct: 21421606 gtcgagggagaactgcttcctgataaatccgcaggccgtgatgtcgatcgagtattgtac 21421547

                                                                            
Query: 423      gagttgcaatggctgcacttatggccaaccacgtggaagtccacttctgagactttgttg 482
                |||||||| ||||||||||| ||||||| ||| |||||||||||||||||||| ||||||
Sbjct: 21421546 gagttgcagtggctgcacttgtggccaatcacatggaagtccacttctgagaccttgttg 21421487

                                              
Query: 483      cagtcattgcaaagaacccaaaccttgtaa 512
                |||||||| || || |||||||||| ||||
Sbjct: 21421486 cagtcattacagagcacccaaacctagtaa 21421457
to top
>emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa0085B23 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 158019

 Score =  178 bits (90), Expect = 1e-41
 Identities = 135/150 (90%)
 Strand = Plus / Plus

                                                                          
Query: 363    gtcgacggagaactgcttcctgataaatctgcaggccgcgacgtcgatcgagtgttgtat 422
              ||||| ||||||||||||||||||||||| |||||||| || ||||||||||| ||||| 
Sbjct: 152604 gtcgagggagaactgcttcctgataaatccgcaggccgtgatgtcgatcgagtattgtac 152663

                                                                          
Query: 423    gagttgcaatggctgcacttatggccaaccacgtggaagtccacttctgagactttgttg 482
              |||||||| ||||||||||| ||||||| ||| |||||||||||||||||||| ||||||
Sbjct: 152664 gagttgcagtggctgcacttgtggccaatcacatggaagtccacttctgagaccttgttg 152723

                                            
Query: 483    cagtcattgcaaagaacccaaaccttgtaa 512
              |||||||| || || |||||||||| ||||
Sbjct: 152724 cagtcattacagagcacccaaacctagtaa 152753
to top
>gb|AY105057.1| Zea mays PCO108332 mRNA sequence
          Length = 1335

 Score =  113 bits (57), Expect = 6e-22
 Identities = 117/137 (85%)
 Strand = Plus / Minus

                                                                       
Query: 375 ctgcttcctgataaatctgcaggccgcgacgtcgatcgagtgttgtatgagttgcaatgg 434
           |||||||| |||||||||||||| ||||| || | ||| |||||||| ||  |||| |||
Sbjct: 935 ctgcttccggataaatctgcagggcgcgatgttgttcgggtgttgtacgatctgcagtgg 876

                                                                       
Query: 435 ctgcacttatggccaaccacgtggaagtccacttctgagactttgttgcagtcattgcaa 494
           |||||||| ||||||| |||||| |||| ||| |||||||| |||||||| || ||||||
Sbjct: 875 ctgcacttgtggccaatcacgtgaaagttcacctctgagaccttgttgcaatcgttgcaa 816

                            
Query: 495 agaacccaaaccttgta 511
           || ||||||| ||||||
Sbjct: 815 agcacccaaatcttgta 799
to top
>gb|BT018742.1| Zea mays clone EL01N0521E02.d mRNA sequence
          Length = 1221

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 115/137 (83%)
 Strand = Plus / Minus

                                                                       
Query: 375 ctgcttcctgataaatctgcaggccgcgacgtcgatcgagtgttgtatgagttgcaatgg 434
           |||||||| ||||||||| | || ||||| || | ||| |||||||| ||  |||| |||
Sbjct: 885 ctgcttccggataaatctacggggcgcgatgttgttcgggtgttgtacgatctgcagtgg 826

                                                                       
Query: 435 ctgcacttatggccaaccacgtggaagtccacttctgagactttgttgcagtcattgcaa 494
           |||||||| ||||||| |||||| |||| ||| |||||||| |||||||| || ||||||
Sbjct: 825 ctgcacttgtggccaatcacgtgaaagttcacctctgagaccttgttgcaatcgttgcaa 766

                            
Query: 495 agaacccaaaccttgta 511
           || ||||||| ||||||
Sbjct: 765 agcacccaaatcttgta 749
to top
>tpg|BK005598.1| TPA: TPA_exp: Homo sapiens NSP (NSP) gene, complete cds, alternatively
              spliced
          Length = 227735

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 340    gtctgtcttaagatgagtctgttg 363
              ||||||||||||||||||||||||
Sbjct: 120205 gtctgtcttaagatgagtctgttg 120228
to top
>gb|AC004702.1|AC004702 Homo sapiens chromosome 17, clone HRPC836L9, complete sequence
          Length = 120821

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 340   gtctgtcttaagatgagtctgttg 363
             ||||||||||||||||||||||||
Sbjct: 83024 gtctgtcttaagatgagtctgttg 83001
to top
>emb|AL953843.6| Zebrafish DNA sequence from clone DKEY-42P8 in linkage group 22,
             complete sequence
          Length = 212575

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 168   ttcaagagatgaattgaatct 188
             |||||||||||||||||||||
Sbjct: 78277 ttcaagagatgaattgaatct 78257
to top
>emb|AL807832.6| Mouse DNA sequence from clone RP23-198D21 on chromosome 2, complete
              sequence
          Length = 192480

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 471    gagactttgttgcagtcattgcaaagaacccaa 503
              |||| ||||||||||||||| |||||| |||||
Sbjct: 145078 gagaatttgttgcagtcattccaaagatcccaa 145046
to top
>gb|DQ455589.1| Phaseolus vulgaris ubiqutin ligase mRNA, partial cds
          Length = 467

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 483 cagtcattgcaaagaacccaaacc 506
           |||||||||||||||| |||||||
Sbjct: 386 cagtcattgcaaagaatccaaacc 363
to top
>gb|AC126932.4| Mus musculus BAC clone RP24-80G20 from chromosome 3, complete sequence
          Length = 214712

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   aatgcttcttctatgtgtat 278
             ||||||||||||||||||||
Sbjct: 67919 aatgcttcttctatgtgtat 67900
to top
>ref|XM_948397.1| Theileria annulata strain Ankara signal recognition particle 68-kDa
           subunit (TA11190) partial mRNA
          Length = 1803

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 210 atggcccagggatggggttgacactact 237
           ||||| ||||| ||||||||||||||||
Sbjct: 750 atggctcagggttggggttgacactact 723
to top
>ref|XM_503706.1| Yarrowia lipolytica CLIB122, YALI0E08822g predicted mRNA
          Length = 1113

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 399 cgcgacgtcgatcgagtgttgtat 422
           ||||||| ||||||||||||||||
Sbjct: 32  cgcgacgacgatcgagtgttgtat 9
to top
>emb|BX530083.11| Zebrafish DNA sequence from clone DKEY-3L17 in linkage group 10, complete
              sequence
          Length = 155046

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    cctggggaatataatcaagc 132
              ||||||||||||||||||||
Sbjct: 118766 cctggggaatataatcaagc 118785
to top
>emb|CR354599.10| Zebrafish DNA sequence from clone CH211-259K16 in linkage group 13,
             complete sequence
          Length = 149455

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   aaacaatgcttcttctatgt 274
             ||||||||||||||||||||
Sbjct: 30338 aaacaatgcttcttctatgt 30357
to top
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    aaaatggtaaagcggcaatg 212
              ||||||||||||||||||||
Sbjct: 855069 aaaatggtaaagcggcaatg 855050
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 15      ataaacttctctcaaatttt 34
               ||||||||||||||||||||
Sbjct: 2155239 ataaacttctctcaaatttt 2155220
to top
>gb|AC019064.6| Homo sapiens BAC clone RP11-153O16 from 2, complete sequence
          Length = 92049

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    gattacagtagctcagaatt 107
             ||||||||||||||||||||
Sbjct: 84500 gattacagtagctcagaatt 84481
to top
>dbj|AP003876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1119_D01
          Length = 97862

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    ataaacttctctcaaatttt 34
             ||||||||||||||||||||
Sbjct: 33501 ataaacttctctcaaatttt 33482
to top
>emb|BX255962.9| Zebrafish DNA sequence from clone CH211-269C21 in linkage group 25,
              complete sequence
          Length = 151830

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    tgaattgaatcttggtaaaa 196
              ||||||||||||||||||||
Sbjct: 113770 tgaattgaatcttggtaaaa 113751
to top
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 399     cgcgacgtcgatcgagtgttgtat 422
               ||||||| ||||||||||||||||
Sbjct: 1037636 cgcgacgacgatcgagtgttgtat 1037659
to top
>dbj|AP004916.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT18E24, TM0074,
             complete sequence
          Length = 131741

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   agcaatgctgtttgcagcaa 149
             ||||||||||||||||||||
Sbjct: 85434 agcaatgctgtttgcagcaa 85415


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,451,312
Number of Sequences: 3902068
Number of extensions: 4451312
Number of successful extensions: 83199
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83043
Number of HSP's gapped (non-prelim): 156
length of query: 514
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 491
effective length of database: 17,143,297,704
effective search space: 8417359172664
effective search space used: 8417359172664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top