ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart14h11 |
|---|---|
| Clone Library Name | barley_pub |
>BARA_ECOLI (P0AEC5) Signal transduction histidine-protein kinase barA (EC| 2.7.13.3) Length = 918 Score = 84.0 bits (206), Expect = 3e-16 Identities = 50/113 (44%), Positives = 64/113 (56%) Frame = -1 Query: 604 LGMTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVM 425 L MT ++ V+DN N ++ L V L G V+ A++ DLILMD+ +P M Sbjct: 666 LAMT-VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDM 724 Query: 424 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 266 DG A + P QQTPVIA+TAHAMA +EK + AG DY KPIE RL Sbjct: 725 DGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>BARA_ECOL6 (P0AEC6) Signal transduction histidine-protein kinase barA (EC| 2.7.13.3) Length = 918 Score = 84.0 bits (206), Expect = 3e-16 Identities = 50/113 (44%), Positives = 64/113 (56%) Frame = -1 Query: 604 LGMTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVM 425 L MT ++ V+DN N ++ L V L G V+ A++ DLILMD+ +P M Sbjct: 666 LAMT-VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDM 724 Query: 424 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 266 DG A + P QQTPVIA+TAHAMA +EK + AG DY KPIE RL Sbjct: 725 DGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>BARA_ECO57 (P0AEC7) Signal transduction histidine-protein kinase barA (EC| 2.7.13.3) Length = 918 Score = 84.0 bits (206), Expect = 3e-16 Identities = 50/113 (44%), Positives = 64/113 (56%) Frame = -1 Query: 604 LGMTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVM 425 L MT ++ V+DN N ++ L V L G V+ A++ DLILMD+ +P M Sbjct: 666 LAMT-VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDM 724 Query: 424 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 266 DG A + P QQTPVIA+TAHAMA +EK + AG DY KPIE RL Sbjct: 725 DGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>PILH_PSEAE (P43501) Protein pilH| Length = 121 Score = 82.4 bits (202), Expect = 1e-15 Identities = 45/119 (37%), Positives = 69/119 (57%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 M +IL+V+D+ L+ L + G V+ A +G GV AR+E+PD++LMD+ +P ++G Sbjct: 1 MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNG 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 242 ++ATRQL D E PVI +T +D+ G DY TKP++ LL I +L Sbjct: 61 FQATRQLTKDAETSAIPVIIVTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVL 119
>BARA_SHIFL (P59342) Signal transduction histidine-protein kinase barA (EC| 2.7.13.3) Length = 918 Score = 82.4 bits (202), Expect = 1e-15 Identities = 49/113 (43%), Positives = 64/113 (56%) Frame = -1 Query: 604 LGMTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVM 425 L MT ++ V+DN N ++ L V L G V+ A++ DLILMD+ +P M Sbjct: 666 LAMT-VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDM 724 Query: 424 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 266 DG A + P +QTPVIA+TAHAMA +EK + AG DY KPIE RL Sbjct: 725 DGIRACELIHQLPHQRQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>PLED_CAUCR (Q9A5I5) Response regulator pleD (Stalked cell| differentiation-controlling protein) [Includes: Diguanylate cyclase (EC 4.6.1.-) (DGC)] Length = 454 Score = 80.9 bits (198), Expect = 3e-15 Identities = 43/116 (37%), Positives = 68/116 (58%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+V+D E N +L +LT + V A DG + A R+ PD+IL+D+ +P MDG+ Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFT 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 245 R+LK DP + PV+ +TA DR + + +G D+ TKPI+ L +++ L Sbjct: 64 VCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSL 119 Score = 40.0 bits (92), Expect = 0.005 Identities = 29/124 (23%), Positives = 60/124 (48%) Frame = -1 Query: 607 GLGMTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPV 428 GLG ++L+V+DNE ++ L + V+ + A + DL++++ + Sbjct: 151 GLG-GRVLIVDDNERQAQRVAAELGVEHRPVIESDPEKAKISAGG--PVDLVIVNAAAKN 207 Query: 427 MDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 248 DG T L+++ +Q PV+A+ KA+ G +D ++PI+ L +++ Sbjct: 208 FDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKT 267 Query: 247 LLER 236 ++R Sbjct: 268 QIQR 271
>GACS_PSESY (P48027) Sensor protein gacS (EC 2.7.13.3)| Length = 907 Score = 80.9 bits (198), Expect = 3e-15 Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 3/107 (2%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 ++L V+DN N ++ L G VV G A V+ ++E DL+LMD+ +P MDG + Sbjct: 658 RVLCVDDNPANLLLVQTLLEDMGAEVVAVEGGYAAVNAVQQEAFDLVLMDVQMPGMDGRQ 717 Query: 412 ATRQLKA-DPELQQT--PVIALTAHAMASDREKAIAAGCDDYDTKPI 281 AT ++A + E Q+ P++ALTAHAMA+++ + +G DDY TKPI Sbjct: 718 ATEAIRAWEAERNQSSLPIVALTAHAMANEKRSLLQSGMDDYLTKPI 764
>ARLR_STAAW (P0C001) Response regulator arlR| Length = 219 Score = 78.6 bits (192), Expect = 1e-14 Identities = 43/121 (35%), Positives = 69/121 (57%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 MT+IL+VED ++ L LT + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 238 R 236 R Sbjct: 118 R 118
>ARLR_STAAU (Q9KJN4) Response regulator arlR| Length = 219 Score = 78.6 bits (192), Expect = 1e-14 Identities = 43/121 (35%), Positives = 69/121 (57%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 MT+IL+VED ++ L LT + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 238 R 236 R Sbjct: 118 R 118
>ARLR_STAAS (Q6G9E6) Response regulator arlR| Length = 219 Score = 78.6 bits (192), Expect = 1e-14 Identities = 43/121 (35%), Positives = 69/121 (57%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 MT+IL+VED ++ L LT + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 238 R 236 R Sbjct: 118 R 118
>ARLR_STAAR (Q6GGZ3) Response regulator arlR| Length = 219 Score = 78.6 bits (192), Expect = 1e-14 Identities = 43/121 (35%), Positives = 69/121 (57%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 MT+IL+VED ++ L LT + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 238 R 236 R Sbjct: 118 R 118
>ARLR_STAAM (P0C000) Response regulator arlR| Length = 219 Score = 78.6 bits (192), Expect = 1e-14 Identities = 43/121 (35%), Positives = 69/121 (57%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 MT+IL+VED ++ L LT + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 238 R 236 R Sbjct: 118 R 118
>ARLR_STAAC (Q5HG04) Response regulator arlR| Length = 219 Score = 78.6 bits (192), Expect = 1e-14 Identities = 43/121 (35%), Positives = 69/121 (57%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 MT+IL+VED ++ L LT + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 238 R 236 R Sbjct: 118 R 118
>ARLR_STAAN (Q99U73) Response regulator arlR| Length = 214 Score = 78.6 bits (192), Expect = 1e-14 Identities = 43/121 (35%), Positives = 69/121 (57%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 MT+IL+VED ++ L LT + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 238 R 236 R Sbjct: 118 R 118
>YSO1_PLEBO (P51586) Hypothetical 14.6 kDa protein in sodA1 3'region (ORF131)| Length = 131 Score = 78.2 bits (191), Expect = 2e-14 Identities = 41/119 (34%), Positives = 69/119 (57%) Frame = -1 Query: 604 LGMTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVM 425 L IL+V+D+ D D+L L +G V +A + + RE P L++ D+++P M Sbjct: 4 LAQMDILVVDDDPDTRDLLRFMLEDEGAIVTVAPNAKEALSLLERELPKLLVSDVAMPEM 63 Query: 424 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 248 DG+E +++ P+ + P IALTA+A DR+ A+ +G +DY TKP++ L+ + Q Sbjct: 64 DGFELIGRVRELPKGETLPAIALTAYAREEDRQAALRSGFNDYLTKPVDPLELIRLVQQ 122
>YEDW_ECOLI (P76340) Probable transcriptional regulatory protein yedW| Length = 223 Score = 78.2 bits (191), Expect = 2e-14 Identities = 43/117 (36%), Positives = 68/117 (58%), Gaps = 1/117 (0%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KILL+EDN+ + +++ L+ G + DG G+ A ++ LI++D+ LP MDGW+ Sbjct: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI-AQL 245 + L+ +QTPVI LTA DR + + +G +DY KP LL+++ AQL Sbjct: 62 ILQTLRT---AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQL 115
>YXDJ_BACSU (P42421) Sensory transduction protein yxdJ| Length = 229 Score = 77.8 bits (190), Expect = 2e-14 Identities = 44/121 (36%), Positives = 70/121 (57%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 M KI++VED+ED +L L + G V+A D A +D RE+PD++L+D++LP DG Sbjct: 1 MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDG 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 + RQ++ + +P+I ++A + D+ AI G DDY KP +L+KI + Sbjct: 61 YYWCRQIR---QHSTSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIR 117 Query: 238 R 236 R Sbjct: 118 R 118
>IRLR_BURPS (O31395) Transcriptional activator protein irlR| Length = 229 Score = 77.8 bits (190), Expect = 2e-14 Identities = 42/119 (35%), Positives = 60/119 (50%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+VED L + LT G DG G+ A E+ DLI++D+ LP DGW Sbjct: 2 RILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGWT 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 +L+ TPV+ LTA DR K + G DDY KP + L++++ +L R Sbjct: 62 VLERLR---RAHSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRR 117
>YYCF_BACSU (P37478) Transcriptional regulatory protein yycF| Length = 235 Score = 77.8 bits (190), Expect = 2e-14 Identities = 45/119 (37%), Positives = 65/119 (54%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KIL+V+D + D+L L ++G V AHDG V+ QPDLIL+D+ LP DG E Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVE 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R+++ ++ P+I LTA D+ + G DDY TKP LL+++ L R Sbjct: 64 VCREVRKKYDM---PIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119
>PRRA_MYCTU (P0A5Z6) Transcriptional regulatory protein prrA| Length = 233 Score = 77.8 bits (190), Expect = 2e-14 Identities = 43/124 (34%), Positives = 66/124 (53%) Frame = -1 Query: 607 GLGMTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPV 428 G+ ++L+V+D+ D L R L G V A DGA + +A +PD I++D+++PV Sbjct: 4 GVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPV 63 Query: 427 MDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 248 +DG L+A PV L+A + DR + AG DDY KP L L++++ Sbjct: 64 LDGVSVVTALRAMD--NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKA 121 Query: 247 LLER 236 LL R Sbjct: 122 LLRR 125
>PRRA_MYCBO (P0A5Z7) Transcriptional regulatory protein prrA| Length = 233 Score = 77.8 bits (190), Expect = 2e-14 Identities = 43/124 (34%), Positives = 66/124 (53%) Frame = -1 Query: 607 GLGMTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPV 428 G+ ++L+V+D+ D L R L G V A DGA + +A +PD I++D+++PV Sbjct: 4 GVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPV 63 Query: 427 MDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 248 +DG L+A PV L+A + DR + AG DDY KP L L++++ Sbjct: 64 LDGVSVVTALRAMD--NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKA 121 Query: 247 LLER 236 LL R Sbjct: 122 LLRR 125
>PRRA_MYCLE (Q50136) Transcriptional regulatory protein prrA| Length = 233 Score = 77.0 bits (188), Expect = 4e-14 Identities = 43/124 (34%), Positives = 65/124 (52%) Frame = -1 Query: 607 GLGMTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPV 428 G+ ++L+V+D+ D L R L G V A DGA + A +PD I++D+++PV Sbjct: 4 GVSSPRVLVVDDDSDVLASLERGLRLSGFEVSTAIDGAEALRNATETRPDAIVLDINMPV 63 Query: 427 MDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 248 +DG L+A PV L+A + DR + AG DDY KP L L++++ Sbjct: 64 LDGVSVVTALRAMD--NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKA 121 Query: 247 LLER 236 LL R Sbjct: 122 LLRR 125
>PCOR_ECOLI (Q47456) Transcriptional regulatory protein pcoR| Length = 226 Score = 76.3 bits (186), Expect = 7e-14 Identities = 41/121 (33%), Positives = 65/121 (53%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 M +IL+VED + L + L +G L ++G G+ A + Q DLI++D+ LP +DG Sbjct: 1 MQRILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDG 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 W+ L+ + PV+ LTA D+ K + G DDY KP + L++++ LL Sbjct: 61 WQIISALRESG--HEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLR 118 Query: 238 R 236 R Sbjct: 119 R 119
>YKOG_BACSU (O34903) Hypothetical sensory transduction protein ykoG| Length = 228 Score = 75.9 bits (185), Expect = 9e-14 Identities = 44/118 (37%), Positives = 63/118 (53%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 IL+VED E +L L +G V + H+G G+D A L+L+D+ LP + G E Sbjct: 6 ILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLEV 65 Query: 409 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R+L+ QTPVI LTA D+ + G +DY TKP E+ LL++I L + Sbjct: 66 LRRLRKTD--SQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQ 121
>COPR_PSESM (Q02540) Transcriptional activator protein copR| Length = 227 Score = 75.9 bits (185), Expect = 9e-14 Identities = 44/119 (36%), Positives = 60/119 (50%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 K+L+ ED L + L G V G VD A E DL+++D+ +P +DGWE Sbjct: 2 KLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGWE 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R+L+ Q PV+ LTA DR K + G DDY KP L LL+++ LL R Sbjct: 62 VIRRLRTAG--QPVPVLFLTARDGVDDRVKGLELGADDYLVKPFALSELLARVRTLLRR 118
>CZCR_RALME (Q44006) Transcriptional activator protein czcR| Length = 225 Score = 75.5 bits (184), Expect = 1e-13 Identities = 40/119 (33%), Positives = 65/119 (54%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 ++L+VED + L + L+ G V +A++G G+ A D+I++D+ LP MDGW Sbjct: 2 RVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGWT 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 + +++ E TPV+ LTA +DR + G DDY KP LL++I + L + Sbjct: 62 VIKSIRSKSE---TPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQ 117
>PHOB_RHIME (Q52990) Phosphate regulon transcriptional regulatory protein phoB| Length = 227 Score = 75.5 bits (184), Expect = 1e-13 Identities = 41/121 (33%), Positives = 63/121 (52%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 + KI +VED E +L L +G V G + PDL+++D LP + G Sbjct: 2 LPKIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSG 61 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 E R+L+ PE ++ P+I LTA S+R + +A G DDY KP P L++++ +L Sbjct: 62 IELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLR 121 Query: 238 R 236 R Sbjct: 122 R 122
>CUSR_ECOLI (P0ACZ8) Transcriptional regulatory protein cusR| Length = 227 Score = 75.5 bits (184), Expect = 1e-13 Identities = 42/119 (35%), Positives = 64/119 (53%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 K+L+VED + + L++ LT G V LA +G G A DLI++D+ LP ++GW+ Sbjct: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R L++ + P++ LTA R K + G DDY KP LL+++ LL R Sbjct: 62 IVRMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>CUSR_ECOL6 (P0ACZ9) Transcriptional regulatory protein cusR| Length = 227 Score = 75.5 bits (184), Expect = 1e-13 Identities = 42/119 (35%), Positives = 64/119 (53%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 K+L+VED + + L++ LT G V LA +G G A DLI++D+ LP ++GW+ Sbjct: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R L++ + P++ LTA R K + G DDY KP LL+++ LL R Sbjct: 62 IVRMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>CUSR_ECO57 (P0AD00) Transcriptional regulatory protein cusR| Length = 227 Score = 75.5 bits (184), Expect = 1e-13 Identities = 42/119 (35%), Positives = 64/119 (53%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 K+L+VED + + L++ LT G V LA +G G A DLI++D+ LP ++GW+ Sbjct: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R L++ + P++ LTA R K + G DDY KP LL+++ LL R Sbjct: 62 IVRMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>PHOP_BACSU (P13792) Alkaline phosphatase synthesis transcriptional regulatory| protein phoP Length = 240 Score = 75.1 bits (183), Expect = 2e-13 Identities = 42/119 (35%), Positives = 64/119 (53%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KIL+V+D E +L L R G V+ A DG + A E+PDLI++D+ LP +DG E Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 +QL+ + P++ LTA D+ + G DDY TKP + +++ +L R Sbjct: 64 VCKQLR--QQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120
>SILR_SALTY (Q9ZHD3) Probable transcriptional regulatory protein silR| Length = 228 Score = 75.1 bits (183), Expect = 2e-13 Identities = 43/119 (36%), Positives = 64/119 (53%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KIL+VED+ + LS+ LT G V A +G G A + DL+++D+ LP ++GW+ Sbjct: 2 KILIVEDDIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWD 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R L++ + PV+ LTA R K + G DDY KP LL+++ LL R Sbjct: 62 IIRMLRSAG--KGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>CPXR_SHIFL (P0AE90) Transcriptional regulatory protein cpxR| Length = 232 Score = 74.7 bits (182), Expect = 2e-13 Identities = 48/127 (37%), Positives = 69/127 (54%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 M KILLV+D+ + +L L +G V++AHDG +D + DL+L+D+ +P +G Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 + LKA + QTPVI LTA DR + G DDY KP L+++I +L Sbjct: 60 IDT---LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 238 R*SHRRE 218 R SH E Sbjct: 117 R-SHWSE 122
>CPXR_ECOLI (P0AE88) Transcriptional regulatory protein cpxR| Length = 232 Score = 74.7 bits (182), Expect = 2e-13 Identities = 48/127 (37%), Positives = 69/127 (54%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 M KILLV+D+ + +L L +G V++AHDG +D + DL+L+D+ +P +G Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 + LKA + QTPVI LTA DR + G DDY KP L+++I +L Sbjct: 60 IDT---LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 238 R*SHRRE 218 R SH E Sbjct: 117 R-SHWSE 122
>CPXR_ECO57 (P0AE89) Transcriptional regulatory protein cpxR| Length = 232 Score = 74.7 bits (182), Expect = 2e-13 Identities = 48/127 (37%), Positives = 69/127 (54%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 M KILLV+D+ + +L L +G V++AHDG +D + DL+L+D+ +P +G Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 + LKA + QTPVI LTA DR + G DDY KP L+++I +L Sbjct: 60 IDT---LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 238 R*SHRRE 218 R SH E Sbjct: 117 R-SHWSE 122
>YCF27_GUITH (O78428) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 254 Score = 73.2 bits (178), Expect = 6e-13 Identities = 38/119 (31%), Positives = 66/119 (55%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 K+L+V+D +L RL+ G VV A DG ++ +E PD++++D+ +P +DG+ Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 ++++ D ++ P+I LTA +DR + G DDY KP L ++I +L R Sbjct: 76 VCQEIRKDSDV---PIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRR 131
>REGX3_MYCSM (Q9F868) Sensory transduction protein regX3| Length = 228 Score = 73.2 bits (178), Expect = 6e-13 Identities = 41/121 (33%), Positives = 64/121 (52%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 MT +L+VED E D L+ L ++G + DG + + R D++L+D+ LP M G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSG 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 + +QL+A + PVI +TA D+ + G DDY TKP L+++I +L Sbjct: 61 TDVCKQLRARSSV---PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 238 R 236 R Sbjct: 118 R 118
>REGX3_MYCTU (Q11156) Sensory transduction protein regX3| Length = 227 Score = 73.2 bits (178), Expect = 6e-13 Identities = 42/121 (34%), Positives = 64/121 (52%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 MT +L+VED E D L+ L ++G + DG A + R D++L+D+ LP M G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 + +QL+A + PVI +TA D+ + G DDY TKP L+++I +L Sbjct: 61 TDVCKQLRARSSV---PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 238 R 236 R Sbjct: 118 R 118
>REGX3_MYCBO (O07130) Sensory transduction protein regX3| Length = 227 Score = 73.2 bits (178), Expect = 6e-13 Identities = 42/121 (34%), Positives = 64/121 (52%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 MT +L+VED E D L+ L ++G + DG A + R D++L+D+ LP M G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 + +QL+A + PVI +TA D+ + G DDY TKP L+++I +L Sbjct: 61 TDVCKQLRARSSV---PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 238 R 236 R Sbjct: 118 R 118
>AFSQ1_STRCO (Q04942) Transcriptional regulatory protein afsQ1| Length = 225 Score = 72.8 bits (177), Expect = 8e-13 Identities = 43/121 (35%), Positives = 67/121 (55%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 M +LL+ED++ L LTR+G V A G G+ R ++PDLI++D+ LP +DG Sbjct: 1 MPSLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDG 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 +E R+++ Q P+I LTA D + +G DDY KP++ L ++I +L Sbjct: 61 FEVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117 Query: 238 R 236 R Sbjct: 118 R 118
>YCF27_PORAE (P28835) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 240 Score = 72.8 bits (177), Expect = 8e-13 Identities = 39/119 (32%), Positives = 67/119 (56%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KIL+++D +L RL+ G V+ A DG + +RE P+L+++D+ +P +DG+ Sbjct: 5 KILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFKREHPNLVVLDLMMPKLDGYG 64 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 ++L+ + ++ P+I LTA + SDR + G DDY KP L ++I +L R Sbjct: 65 VCQELRKESDV---PIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRR 120
>TCTD_SALTY (P22104) Transcriptional regulatory protein tctD| Length = 224 Score = 72.0 bits (175), Expect = 1e-12 Identities = 42/119 (35%), Positives = 62/119 (52%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 ++LL EDN + L + L + G V DG A E L ++D+++P MDG E Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGLE 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 ++L+ Q PV+ LTA + +DR K + G DDY KP EL L +++ LL R Sbjct: 62 VVQRLRKRG--QTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRR 118
>PFER_PSEAE (Q04803) Transcriptional activator protein pfeR| Length = 305 Score = 71.2 bits (173), Expect = 2e-12 Identities = 42/119 (35%), Positives = 62/119 (52%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 ++LLVED+ + L R+G V + DG+ G++ A RE DL+L+D+ LP +DG Sbjct: 79 RLLLVEDDPRLREDLDAHFRRRGFRVTVCGDGSHGLEAAGREAFDLVLLDIMLPGLDGLA 138 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 L+ + Q TPV+ ++A DR G DDY KP L L ++ LL R Sbjct: 139 LLESLRRE---QATPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAELDARTDALLRR 194
>MCS4_SCHPO (P87323) Response regulator mcs4 (Mitotic catastrophe suppressor 4)| Length = 522 Score = 70.9 bits (172), Expect = 3e-12 Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 26/140 (18%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 +L+VEDN N +L + ++ + +A DG ++ +++ LILMD+ LP M G E Sbjct: 364 VLIVEDNIINQKILETFMKKRNISSEVAKDGLEALEKWKKKSFHLILMDIQLPTMSGIEV 423 Query: 409 TRQLKADPELQ------------------------QTPVI--ALTAHAMASDREKAIAAG 308 T++++ L Q+PVI ALTA ++ +DR +A+AAG Sbjct: 424 TQEIRRLERLNAIGVGAPKLTQPIPEKDQLNENKFQSPVIIVALTASSLMADRNEALAAG 483 Query: 307 CDDYDTKPIELPRLLSKIAQ 248 C+D+ TKP+ L L KI + Sbjct: 484 CNDFLTKPVSLVWLEKKITE 503
>YCF27_CYAPA (P48259) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 239 Score = 70.1 bits (170), Expect = 5e-12 Identities = 40/119 (33%), Positives = 65/119 (54%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KIL+V+D +L RL+ G VV A DG + + E P+L+++D+ +P +DG+ Sbjct: 7 KILVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLEHPNLVVLDVMMPKLDGYG 66 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 ++L+ + ++ P+I LTA +DR + G DDY KP L ++I LL R Sbjct: 67 VCQELRKESDI---PIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRR 122
>YCLJ_BACSU (P94413) Hypothetical sensory transduction protein yclJ| Length = 227 Score = 69.7 bits (169), Expect = 6e-12 Identities = 41/119 (34%), Positives = 58/119 (48%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KIL++EDN M ++G HDG G E DLI++D+ LP MDG Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R+++ E P+I LTA SD+ G DDY TKP L+++I ++ R Sbjct: 62 ICRKIR---ETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRR 117
>YRKP_BACSU (P54443) Hypothetical sensory transduction protein yrkP| Length = 231 Score = 69.7 bits (169), Expect = 6e-12 Identities = 39/119 (32%), Positives = 65/119 (54%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+VED+ED D+L LTR G V+ A DG + + DL+++D+ +P + G E Sbjct: 4 RILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQLV-NDSLDLVILDIMMPGISGIE 62 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 + ++ + P++ LTA + D+ + + AG DDY TKP L +++ L R Sbjct: 63 TCQHIR---KSSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRR 118
>YCF27_PORPU (P51358) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 243 Score = 69.3 bits (168), Expect = 8e-12 Identities = 39/119 (32%), Positives = 64/119 (53%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KIL+V+D +L RLT G V+ A +G + R+E P L+++D+ +P +DG+ Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 ++L+ + ++ P+I LTA DR + G DDY KP L ++I +L R Sbjct: 67 VCQELRKESDV---PIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122
>PHOB_SHIFL (P45607) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 68.9 bits (167), Expect = 1e-11 Identities = 40/119 (33%), Positives = 60/119 (50%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+VED +M+ L + G V A D + V+ PDLIL+D LP G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 + LK + + PV+ LTA DR + + G DDY TKP L+++I ++ R Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>PHOB_SHIDY (P45606) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 68.9 bits (167), Expect = 1e-11 Identities = 40/119 (33%), Positives = 60/119 (50%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+VED +M+ L + G V A D + V+ PDLIL+D LP G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 + LK + + PV+ LTA DR + + G DDY TKP L+++I ++ R Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>PHOB_ECOLI (P0AFJ5) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 68.9 bits (167), Expect = 1e-11 Identities = 40/119 (33%), Positives = 60/119 (50%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+VED +M+ L + G V A D + V+ PDLIL+D LP G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 + LK + + PV+ LTA DR + + G DDY TKP L+++I ++ R Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>PHOB_ECO57 (P0AFJ6) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 68.9 bits (167), Expect = 1e-11 Identities = 40/119 (33%), Positives = 60/119 (50%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+VED +M+ L + G V A D + V+ PDLIL+D LP G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 + LK + + PV+ LTA DR + + G DDY TKP L+++I ++ R Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>PHOB_KLEPN (P45605) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 68.6 bits (166), Expect = 1e-11 Identities = 40/119 (33%), Positives = 60/119 (50%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+VED +M+ L + G V A D + V+ PDLIL+D LP G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQ 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 + LK + + PV+ LTA DR + + G DDY TKP L+++I ++ R Sbjct: 64 FIKLLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>MAK1_SCHPO (Q9P7Q7) Peroxide stress-activated histidine kinase mak1 (EC| 2.7.13.3) (Mcs4-associated kinase 1) (His-Asp phosphorelay kinase phk3) Length = 1639 Score = 68.6 bits (166), Expect = 1e-11 Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 6/122 (4%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPD---LILMDMSLPVMDG 419 +LL EDN N ++SR L R G+ + DG V+ +RE+P+ LILMD+ +PVMDG Sbjct: 1508 VLLAEDNIINIKVISRYLERIGVKFKVTMDGLQCVEEWKREKPNFYSLILMDLQMPVMDG 1567 Query: 418 WEA---TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 248 ++A R+ + + + + P++AL+A+A+ +G D Y KPI L L I+ Sbjct: 1568 YQACNEIRKYELENDYPKVPIVALSANALPHVVLSCKDSGFDSYLAKPITLQHLSLIISG 1627 Query: 247 LL 242 +L Sbjct: 1628 IL 1629
>KDPE_ECOLI (P21866) KDP operon transcriptional regulatory protein kdpE| Length = 225 Score = 68.2 bits (165), Expect = 2e-11 Identities = 45/128 (35%), Positives = 65/128 (50%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 MT +L+VED + L L G+ V A G+ A +PDLI++D+ LP DG Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 E R L+ + PVI L+A + SD+ A+ AG DDY +KP + L +++ L Sbjct: 61 IEFIRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 Query: 238 R*SHRREP 215 R S P Sbjct: 118 RHSATTAP 125
>CREB_ECOLI (P08368) Transcriptional regulatory protein creB| Length = 229 Score = 67.4 bits (163), Expect = 3e-11 Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 1/119 (0%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 + LVED + D L L ++G V + G +D AR++ PD++++D+ LP + G+E Sbjct: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 Query: 409 TRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 RQL A P L PV+ LTA + DR + G DDY KP + +++ LL R Sbjct: 66 CRQLLALHPAL---PVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>MTRA_MYCTU (P0A5Z4) DNA-binding response regulator mtrA| Length = 225 Score = 67.0 bits (162), Expect = 4e-11 Identities = 38/119 (31%), Positives = 63/119 (52%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+V+D+ +ML+ L +G + DG + R +PDL+L+D+ LP M+G + Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R L+AD P++ LTA D + +G DDY KP + L++++ L R Sbjct: 64 VCRVLRAD---SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 119
>MTRA_MYCPA (Q93CB8) DNA-binding response regulator mtrA| Length = 225 Score = 67.0 bits (162), Expect = 4e-11 Identities = 38/119 (31%), Positives = 63/119 (52%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+V+D+ +ML+ L +G + DG + R +PDL+L+D+ LP M+G + Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R L+AD P++ LTA D + +G DDY KP + L++++ L R Sbjct: 64 VCRVLRAD---SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 119
>MTRA_MYCLE (Q9CCJ2) DNA-binding response regulator mtrA| Length = 225 Score = 67.0 bits (162), Expect = 4e-11 Identities = 38/119 (31%), Positives = 63/119 (52%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+V+D+ +ML+ L +G + DG + R +PDL+L+D+ LP M+G + Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R L+AD P++ LTA D + +G DDY KP + L++++ L R Sbjct: 64 VCRVLRAD---SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 119
>MTRA_MYCBO (P0A5Z5) DNA-binding response regulator mtrA| Length = 225 Score = 67.0 bits (162), Expect = 4e-11 Identities = 38/119 (31%), Positives = 63/119 (52%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+V+D+ +ML+ L +G + DG + R +PDL+L+D+ LP M+G + Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R L+AD P++ LTA D + +G DDY KP + L++++ L R Sbjct: 64 VCRVLRAD---SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 119
>YFHA_ECOLI (P0AFU4) Hypothetical protein yfhA (ORF-2)| Length = 444 Score = 67.0 bits (162), Expect = 4e-11 Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 +LLV+D+ +L RLT +G VV A GA G+ RE+ DL++ D+ + MDG + Sbjct: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 Query: 409 TRQL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 ++ K P + PVI LTAH D A G + TKP++ L I LE+ Sbjct: 68 FAEIQKVQPGM---PVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123
>YFHA_ECO57 (P0AFU5) Hypothetical protein yfhA| Length = 444 Score = 67.0 bits (162), Expect = 4e-11 Identities = 42/119 (35%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 +LLV+D+ +L RLT +G VV A GA G+ RE+ DL++ D+ + MDG + Sbjct: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 Query: 409 TRQL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 ++ K P + PVI LTAH D A G + TKP++ L I LE+ Sbjct: 68 FAEIQKVQPGM---PVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123
>YCF29_PORPU (P51343) Probable transcriptional regulator ycf29| Length = 209 Score = 66.6 bits (161), Expect = 5e-11 Identities = 39/118 (33%), Positives = 63/118 (53%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 ++LVE++ + L +G V +A +G A + + DLI+ D+ +P++DG+E Sbjct: 5 LMLVENDTVLSKAIQEYLIDQGFNVDIALNGLEAFQLANKYKFDLIISDIIMPIIDGYEL 64 Query: 409 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 +L+ +L + PVI LTA M DR K GC Y +KP + L+S I L+ R Sbjct: 65 LEKLRKIDKLAKIPVIFLTAKGMTKDRIKGYNMGCYGYLSKPFDPEELVSLIKNLIYR 122
>EVGS_ECOLI (P30855) Sensor protein evgS precursor (EC 2.7.13.3)| Length = 1197 Score = 66.2 bits (160), Expect = 7e-11 Identities = 39/115 (33%), Positives = 66/115 (57%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 IL+ +D+ N +L R+L G V A DG + + DL++ D+++P MDG+E Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 409 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 245 TR+L+ + P+ LTA+A A++REK ++ G + KP+ L L + ++QL Sbjct: 1021 TRKLR--EQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQL 1073
>QSEB_HAEIN (P45337) Transcriptional regulatory protein qseB| Length = 221 Score = 65.9 bits (159), Expect = 9e-11 Identities = 38/119 (31%), Positives = 63/119 (52%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +ILL+ED+ + L LT+ G V DG G+ D +++D++LP +DG E Sbjct: 2 RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 +Q +++ Q PV+ LTA +R K + +G DDY KP L + +++ L+ R Sbjct: 62 VLQQWRSNH--QDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRR 118
>YCF27_GALSU (P28257) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 255 Score = 65.9 bits (159), Expect = 9e-11 Identities = 36/119 (30%), Positives = 65/119 (54%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KIL+ +D +L RL+ G V+ A DG + + +E P+L+++D+ +P +DG+ Sbjct: 9 KILIADDESSIRRILETRLSIIGYEVLTAPDGRSALFLFHKEHPNLVVLDVMMPKIDGYG 68 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 ++++ + ++ P+I LTA +DR + G DDY KP L ++I +L R Sbjct: 69 VCQEIRKESDI---PIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRR 124
>ATOC_ECOLI (Q06065) Acetoacetate metabolism regulatory protein atoC| (Ornithine/arginine decarboxylase inhibitor) (Ornithine decarboxylase antizyme) Length = 461 Score = 65.5 bits (158), Expect = 1e-10 Identities = 38/127 (29%), Positives = 69/127 (54%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 + +IL+V+D ++ MLS +G A++G + PD++LMD+ +P MDG Sbjct: 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDG 63 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 +A +++++ +TPVI +TA+A +A+ G DY KP +L L + + L+ Sbjct: 64 IKALKEMRSHE--TRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 Query: 238 R*SHRRE 218 S ++E Sbjct: 122 LQSMKKE 128
>DLTR_STRA5 (P0A4I0) Transcriptional regulatory protein dltR| Length = 224 Score = 65.1 bits (157), Expect = 2e-10 Identities = 38/113 (33%), Positives = 60/113 (53%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 ++L+VED + + + L KG V LA DG G++ DL+L+D+ LP G Sbjct: 2 RLLVVEDEKSIAEAIQALLADKGYSVDLAFDGDDGLEYILTGLYDLVLLDIMLPKRSGLS 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 254 ++++ +TP+I LTA + D+ + G DDY TKP E LL++I Sbjct: 62 VLKRVREAG--LETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARI 112
>DLTR_STRA3 (P0A4H9) Transcriptional regulatory protein dltR| Length = 224 Score = 65.1 bits (157), Expect = 2e-10 Identities = 38/113 (33%), Positives = 60/113 (53%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 ++L+VED + + + L KG V LA DG G++ DL+L+D+ LP G Sbjct: 2 RLLVVEDEKSIAEAIQALLADKGYSVDLAFDGDDGLEYILTGLYDLVLLDIMLPKRSGLS 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 254 ++++ +TP+I LTA + D+ + G DDY TKP E LL++I Sbjct: 62 VLKRVREAG--LETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARI 112
>RESD_BACSU (P35163) Transcriptional regulatory protein resD| Length = 240 Score = 65.1 bits (157), Expect = 2e-10 Identities = 40/120 (33%), Positives = 61/120 (50%) Frame = -1 Query: 595 TKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 416 TKIL+V+D +L L R+ + A +G + DLIL+D+ +P DG Sbjct: 7 TKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGI 66 Query: 415 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 E RQ++ E + TP+I LTA ++R + AG DDY KP ++ ++ LL R Sbjct: 67 EVCRQIR---EKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123
>RPRY_BACFR (Q9AE24) Transcriptional regulatory protein rprY| Length = 236 Score = 65.1 bits (157), Expect = 2e-10 Identities = 39/119 (32%), Positives = 60/119 (50%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +ILL ED+E+ +L L KG L DG AG + + DL + D+ +P DG+ Sbjct: 9 RILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGFKAFLKNKYDLCVFDVMMPKKDGFT 68 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 ++++A + P+I LTA + D + G DDY TKP + L +I +L R Sbjct: 69 LAQEVRA--ANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAILRR 125
>CHVI_AGRTU (Q07783) Transcriptional regulatory protein chvI| Length = 241 Score = 65.1 bits (157), Expect = 2e-10 Identities = 42/125 (33%), Positives = 62/125 (49%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 M I LV+D+ + +S L R+G V DGA+ VD P L + D+ +P MDG Sbjct: 1 MQTIALVDDDRNILTSVSIALEREGYRVETYTDGASAVDGLIARPPQLAIFDIKMPRMDG 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 E R+L+ ++ PVI LT+ D + G DD+ TKP L+ ++ +L Sbjct: 61 MELLRRLRQKSDI---PVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILR 117 Query: 238 R*SHR 224 R S R Sbjct: 118 RASSR 122
>LUXQ_VIBVY (Q7MD16) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 857 Score = 65.1 bits (157), Expect = 2e-10 Identities = 39/105 (37%), Positives = 58/105 (55%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 K+LLVEDN N +L + + V DG ++ + DLILMD LP M G E Sbjct: 735 KVLLVEDNHTNAFILKAFCQKYQMSVEWVQDGTQALEKLKEHAFDLILMDNQLPKMGGIE 794 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 278 ATR+++ +L TP+ A TA A S +++ ++AG + KPI+ Sbjct: 795 ATREIRETLKL-GTPIYACTADAQESTKQEFLSAGANRVIVKPIK 838
>LUXQ_VIBVU (Q8D5Z6) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 857 Score = 65.1 bits (157), Expect = 2e-10 Identities = 39/105 (37%), Positives = 58/105 (55%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 K+LLVEDN N +L + + V DG ++ + DLILMD LP M G E Sbjct: 735 KVLLVEDNHTNAFILKAFCQKYQMSVEWVQDGTQALEKLKEHAFDLILMDNQLPKMGGIE 794 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 278 ATR+++ +L TP+ A TA A S +++ ++AG + KPI+ Sbjct: 795 ATREIRETLKL-GTPIYACTADAQESTKQEFLSAGANRVIVKPIK 838
>RCAC_FREDI (Q01473) Protein rcaC| Length = 651 Score = 64.7 bits (156), Expect = 2e-10 Identities = 42/128 (32%), Positives = 68/128 (53%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KILLVED++ +L++ LT V + DG G + DLI++D+ LP +DG Sbjct: 2 KILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGIS 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER* 233 ++ +A + P++ LTA + + + + AG DDY KP + L+++I LL R Sbjct: 62 LCKRFRA--QGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRG 119 Query: 232 SHRREPWL 209 S+ P L Sbjct: 120 SNNPFPLL 127 Score = 60.8 bits (146), Expect = 3e-09 Identities = 33/119 (27%), Positives = 65/119 (54%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 K+++++D++D L L G V D + PD +++D+++P ++G+E Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 + L++DP Q+ PV+ L+ + + +A A G DDY KP++ L ++I + L+R Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRILRRLQR 645
>SLN1_YEAST (P39928) Osmolarity two-component system protein SLN1 (EC 2.7.13.3)| Length = 1220 Score = 64.7 bits (156), Expect = 2e-10 Identities = 39/115 (33%), Positives = 70/115 (60%), Gaps = 6/115 (5%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLX-VVLAHDGAAGVD-----TARREQPDLILMDMSLP 431 KIL+VEDN N +++ R L +G+ + LA DG D T++ E ++I MD+ +P Sbjct: 1089 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMP 1148 Query: 430 VMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 266 +DG +T+ ++ D +P++ALTA A S+ ++ + +G + + +KPI+ P+L Sbjct: 1149 KVDGLLSTKMIRRDLGYT-SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKL 1202
>SSK1_YEAST (Q07084) Osomolarity two-component system protein SSK1| Length = 712 Score = 64.3 bits (155), Expect = 3e-10 Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 26/140 (18%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 +L+VEDN N +L L + + LA +G V+ + LI MD+ LPV+ G EA Sbjct: 506 VLIVEDNVINQAILGSFLRKHKISYKLAKNGQEAVNIWKEGGLHLIFMDLQLPVLSGIEA 565 Query: 409 TRQLK------------------------ADPELQQTPVI--ALTAHAMASDREKAIAAG 308 +Q++ Q PVI ALTA D+ KA+ +G Sbjct: 566 AKQIRDFEKQNGIGIQKSLNNSHSNLEKGTSKRFSQAPVIIVALTASNSQMDKRKALLSG 625 Query: 307 CDDYDTKPIELPRLLSKIAQ 248 C+DY TKP+ L L KI + Sbjct: 626 CNDYLTKPVNLHWLSKKITE 645
>RCSC_SALTI (Q56128) Sensor protein rcsC (EC 2.7.13.3) (Capsular synthesis| regulator component C) Length = 948 Score = 64.3 bits (155), Expect = 3e-10 Identities = 36/119 (30%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 IL+V+D+ N +L+ +L G A+DG ++ + D++L D+++P MDG+ Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886 Query: 409 TRQLKADPELQQT-PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 T++++ +L T PV+ +TA+A+A ++++ + +G D +KP+ L L +A ER Sbjct: 887 TQRIR---QLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDALKQTLAVYAER 942
>EVGS_ECO57 (P58402) Sensor protein evgS precursor (EC 2.7.13.3)| Length = 1197 Score = 63.5 bits (153), Expect = 5e-10 Identities = 38/115 (33%), Positives = 65/115 (56%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 IL+ +D+ N +L R+L G V A DG + + DL++ D+++P +DG+E Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNVDGFEL 1020 Query: 409 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 245 TR+L+ + P+ LTA+A A++REK + G + KP+ L L + ++QL Sbjct: 1021 TRKLR--EQNSSLPIWGLTANAQANEREKGLNCGMNLCLFKPLTLDVLKTHLSQL 1073
>CYAB_STIAU (P40138) Adenylate cyclase 2 (EC 4.6.1.1) (ATP pyrophosphate-lyase| 2) (Adenylyl cyclase 2) (AC2) Length = 352 Score = 63.5 bits (153), Expect = 5e-10 Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 2/124 (1%) Frame = -1 Query: 601 GMTKILLVEDNEDNWDMLSRRLTRKGLX--VVLAHDGAAGVDTARREQPDLILMDMSLPV 428 G ++++V+D+ D + L GL V+ D ++ + QP ++L D+ +P Sbjct: 4 GHHRVMVVDDSPLACDFVKEGLEALGLGYEVMCFQDPYEALEQVGKVQPAIVLSDLDMPG 63 Query: 427 MDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 248 +DG E +LK P +Q PVI LTA+ ++R K + AG DDY K + L ++I Sbjct: 64 IDGLELCWRLKESPS-RQVPVIILTANDSEAERVKGLRAGADDYVNKSASMAELSARIES 122 Query: 247 LLER 236 ++ R Sbjct: 123 VMRR 126
>RCSC_SALTY (P58662) Sensor protein rcsC (EC 2.7.13.3) (Capsular synthesis| regulator component C) Length = 948 Score = 63.5 bits (153), Expect = 5e-10 Identities = 36/119 (30%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 IL+V+D+ N +L+ +L G A+DG ++ + D++L D+++P MDG+ Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886 Query: 409 TRQLKADPELQQT-PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 T++++ +L T PV+ +TA+A+A ++++ + +G D +KP+ L L +A ER Sbjct: 887 TQRIR---QLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDVLKQTLAVYAER 942
>ARCB_SHIFL (P0AEC4) Aerobic respiration control sensor protein arcB (EC| 2.7.13.3) Length = 778 Score = 63.2 bits (152), Expect = 6e-10 Identities = 40/113 (35%), Positives = 66/113 (58%), Gaps = 1/113 (0%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 +LLVED E N + L + G V +A G A ++ + + DL+L+D+ LP M G + Sbjct: 528 VLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDI 587 Query: 409 TRQL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 254 +R+L K P P++ALTA+ + D+++ + AG DD +KP+ +P L + I Sbjct: 588 SRELTKRYPREDLPPLVALTANVL-KDKQEYLNAGMDDVLSKPLSVPALTAMI 639
>ARCB_ECOLI (P0AEC3) Aerobic respiration control sensor protein arcB (EC| 2.7.13.3) Length = 778 Score = 63.2 bits (152), Expect = 6e-10 Identities = 40/113 (35%), Positives = 66/113 (58%), Gaps = 1/113 (0%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 +LLVED E N + L + G V +A G A ++ + + DL+L+D+ LP M G + Sbjct: 528 VLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDI 587 Query: 409 TRQL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 254 +R+L K P P++ALTA+ + D+++ + AG DD +KP+ +P L + I Sbjct: 588 SRELTKRYPREDLPPLVALTANVL-KDKQEYLNAGMDDVLSKPLSVPALTAMI 639
>ARCB_ECO57 (P58363) Aerobic respiration control sensor protein arcB (EC| 2.7.13.3) Length = 778 Score = 63.2 bits (152), Expect = 6e-10 Identities = 40/113 (35%), Positives = 66/113 (58%), Gaps = 1/113 (0%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 +LLVED E N + L + G V +A G A ++ + + DL+L+D+ LP M G + Sbjct: 528 VLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDI 587 Query: 409 TRQL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 254 +R+L K P P++ALTA+ + D+++ + AG DD +KP+ +P L + I Sbjct: 588 SRELTKRYPREDLPPLVALTANVL-KDKQEYLNAGMDDVLSKPLSVPALTAMI 639
>CTRA_CAUCR (Q45994) Cell cycle transcriptional regulator ctrA (Response| regulator sokA) Length = 231 Score = 63.2 bits (152), Expect = 6e-10 Identities = 36/119 (30%), Positives = 59/119 (49%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 ++LL+ED+ + L +G V G GVD + DLIL+D++LP M G + Sbjct: 2 RVLLIEDDSATAQTIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLNLPDMSGID 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R L+ TP++ L+ + + K A G DDY TKP ++++I ++ R Sbjct: 62 VLRTLRV--AKINTPIMILSGSSEIDTKVKTFAGGADDYMTKPFHKDEMIARIHAVVRR 118
>SP0A_CLODI (P52938) Stage 0 sporulation protein A homolog| Length = 274 Score = 62.4 bits (150), Expect = 1e-09 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 2/159 (1%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDG 419 KI+L +DN+D +L L+ + +L A DG +D ++ QPDL+++D+ +P +DG Sbjct: 10 KIVLADDNKDFCQVLKEYLSNEDDIDILGIAKDGIEALDLVKKTQPDLLILDVIMPHLDG 69 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 +L + +I L+A + AI G D Y KP + +++I +L+ Sbjct: 70 LGVIEKLNTMDIPKMPKIIVLSAVGQDKITQSAINLGADYYIVKPFDFVVFINRIRELVS 129 Query: 238 R*SHRREPWLPP*PSTAMKLRRQFLLFGVGTTFTAIAAI 122 + EP P P ++ R + VG T I I Sbjct: 130 NRVTQVEP--KPRPVQETQMTRSDFVKNVGNIETEITNI 166
>YCBL_BACSU (P42244) Hypothetical sensory transduction protein ycbL| Length = 226 Score = 62.4 bits (150), Expect = 1e-09 Identities = 35/117 (29%), Positives = 61/117 (52%) Frame = -1 Query: 586 LLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 407 +LVED+ +M+ LT++G +V A DG G+ ++ DL+L+D+ LP ++G + Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDF- 59 Query: 406 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 LK E PV+ ++A D+ + G DDY KP + L +++ + R Sbjct: 60 --LKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRR 114
>RCSC_ECOLI (P14376) Sensor kinase protein rcsC (EC 2.7.13.3) (Capsular synthesis| regulator component C) Length = 949 Score = 62.0 bits (149), Expect = 1e-09 Identities = 35/119 (29%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 IL+V+D+ N +L+ +L G A+DG ++ + D++L D+++P MDG+ Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 409 TRQLKADPELQQT-PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 T++++ +L T PVI +TA+A+A ++++ + +G D +KP+ L + + ER Sbjct: 887 TQRIR---QLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAER 942
>SRRA_STAAW (Q7A0U4) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 61.6 bits (148), Expect = 2e-09 Identities = 37/119 (31%), Positives = 61/119 (51%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+V+D + +L L R+ + A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAU (Q9L524) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 61.6 bits (148), Expect = 2e-09 Identities = 37/119 (31%), Positives = 61/119 (51%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+V+D + +L L R+ + A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAS (Q6G972) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 61.6 bits (148), Expect = 2e-09 Identities = 37/119 (31%), Positives = 61/119 (51%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+V+D + +L L R+ + A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAR (Q6GGK6) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 61.6 bits (148), Expect = 2e-09 Identities = 37/119 (31%), Positives = 61/119 (51%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+V+D + +L L R+ + A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAN (Q7A5H6) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 61.6 bits (148), Expect = 2e-09 Identities = 37/119 (31%), Positives = 61/119 (51%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+V+D + +L L R+ + A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAM (Q7A2R6) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 61.6 bits (148), Expect = 2e-09 Identities = 37/119 (31%), Positives = 61/119 (51%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+V+D + +L L R+ + A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAC (Q5HFT0) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 61.6 bits (148), Expect = 2e-09 Identities = 37/119 (31%), Positives = 61/119 (51%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+V+D + +L L R+ + A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SPHR_SYNP7 (P39663) Alkaline phosphatase synthesis transcriptional regulatory| protein sphR Length = 257 Score = 61.6 bits (148), Expect = 2e-09 Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 9/129 (6%) Frame = -1 Query: 595 TKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARR---------EQPDLILMD 443 ++IL+VED DM++ L ++G V +A DG ++ R E PDL+++D Sbjct: 24 SRILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLD 83 Query: 442 MSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLL 263 + LP ++G + R L+ P++ L+A +DR + G DDY TKP L+ Sbjct: 84 LMLPAVNGLDFCRLLRRQGVT--VPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELV 141 Query: 262 SKIAQLLER 236 ++ LL R Sbjct: 142 ARCRALLRR 150
>CHVI_RHIME (P50350) Transcriptional regulatory protein chvI| Length = 240 Score = 60.8 bits (146), Expect = 3e-09 Identities = 39/125 (31%), Positives = 62/125 (49%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 M I LV+D+ + +S L +G V DGA+ ++ P L + D+ +P MDG Sbjct: 1 MQTIALVDDDRNILTSVSIALEAEGYKVETYTDGASALEGLLARPPQLAIFDIKMPRMDG 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 E R+L+ +L PVI LT+ D + G DD+ TKP L+ ++ +L Sbjct: 61 MELLRRLRQKSDL---PVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILR 117 Query: 238 R*SHR 224 R ++R Sbjct: 118 RAANR 122
>PHOB_PSEAE (P23620) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 60.8 bits (146), Expect = 3e-09 Identities = 37/118 (31%), Positives = 57/118 (48%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 IL+V+D +M++ L G + A + +PDLIL+D LP G E Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGIEL 65 Query: 409 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R+LK D P+I LTA ++ + + G DDY TKP L++++ +L R Sbjct: 66 ARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123
>TORR_ECOLI (P38684) TorCAD operon transcriptional regulatory protein torR| Length = 230 Score = 60.8 bits (146), Expect = 3e-09 Identities = 39/118 (33%), Positives = 60/118 (50%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 I++VED L T++G V + GA + + + DLIL+D++LP +G Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 Query: 409 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 TR L+ E +I +T + DR + G DDY TKP+EL L+ ++ LL R Sbjct: 65 TRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119
>CUTR_STRLI (P0A4I2) Transcriptional regulatory protein cutR (Defective melC1| suppressor protein) Length = 217 Score = 60.8 bits (146), Expect = 3e-09 Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 1/120 (0%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 ++L+VED + D ++ L R+ + V + +DGAA ++ D++++D LP++ G + Sbjct: 2 RVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGDD 61 Query: 412 ATRQLKADPEL-QQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R++ EL T V+ LTA SDR + + G DDY KP L++++ L R Sbjct: 62 VCRKI---VELGMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRR 118
>CUTR_STRCO (P0A4I1) Transcriptional regulatory protein cutR (Defective melC1| suppressor protein) Length = 217 Score = 60.8 bits (146), Expect = 3e-09 Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 1/120 (0%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 ++L+VED + D ++ L R+ + V + +DGAA ++ D++++D LP++ G + Sbjct: 2 RVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGDD 61 Query: 412 ATRQLKADPEL-QQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R++ EL T V+ LTA SDR + + G DDY KP L++++ L R Sbjct: 62 VCRKI---VELGMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRR 118
>TORR_ECO57 (P58357) TorCAD operon transcriptional regulatory protein torR| Length = 230 Score = 60.5 bits (145), Expect = 4e-09 Identities = 39/118 (33%), Positives = 60/118 (50%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 I++VED L T++G V + GA + + + DLIL+D++LP +G Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLML 64 Query: 409 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 TR L+ E +I +T + DR + G DDY TKP+EL L+ ++ LL R Sbjct: 65 TRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119
>SKN7_YEAST (P38889) Transcription factor SKN7 (Peroxide sensitivity protein| POS9) Length = 622 Score = 60.5 bits (145), Expect = 4e-09 Identities = 40/129 (31%), Positives = 67/129 (51%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 +LLVED+ + + S+ L + G V + DG + + T + + DL+LMD+ +P +DG A Sbjct: 379 VLLVEDDAVSIQLCSKFLRKYGCTVQVVSDGLSAISTLEKYRYDLVLMDIVMPNLDGATA 438 Query: 409 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*S 230 T +++ +TP+IA+T + M D + G +D KP L S + + L+ Sbjct: 439 TSIVRSFD--NETPIIAMTGNIMNQDLITYLQHGMNDILAKPFTRDDLHSILIRYLKDRI 496 Query: 229 HRREPWLPP 203 E LPP Sbjct: 497 PLCEQQLPP 505
>PHOB_HAEIN (P45189) Phosphate regulon transcriptional regulatory protein phoB| Length = 231 Score = 60.5 bits (145), Expect = 4e-09 Identities = 40/119 (33%), Positives = 60/119 (50%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KIL+VED +M++ L++K V+ A D ++ + E P LIL+D LP G + Sbjct: 4 KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIK-ENPKLILLDWMLPGRSGIQ 62 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 + +K P+I LTA + D + AG DDY TKP LL++I + R Sbjct: 63 FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRR 121
>QSEB_SALTY (P66795) Transcriptional regulatory protein qseB| Length = 219 Score = 59.7 bits (143), Expect = 7e-09 Identities = 36/119 (30%), Positives = 63/119 (52%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +ILLVED+ D + L++ G V +G G + D +++D++LP MDG + Sbjct: 2 RILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRD 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R+ + + +Q PV+ LTA ++R + + G DDY KP L + +++ L+ R Sbjct: 62 ILREWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRR 118
>QSEB_SALTI (P66796) Transcriptional regulatory protein qseB| Length = 219 Score = 59.7 bits (143), Expect = 7e-09 Identities = 36/119 (30%), Positives = 63/119 (52%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +ILLVED+ D + L++ G V +G G + D +++D++LP MDG + Sbjct: 2 RILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRD 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R+ + + +Q PV+ LTA ++R + + G DDY KP L + +++ L+ R Sbjct: 62 ILREWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRR 118
>GTCR_ANEMI (Q44929) Response regulator gtcR| Length = 242 Score = 59.3 bits (142), Expect = 9e-09 Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 1/129 (0%) Frame = -1 Query: 598 MTKILLVEDNEDNW-DMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMD 422 M+K +L+ D+E ++L L R+ ++ A+DG + R+ DL ++D+ +P +D Sbjct: 1 MSKTILIADDEPEIIELLKLFLERESYRIIEAYDGEQAWNYIRQHPVDLAIIDIMMPALD 60 Query: 421 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 242 G++ ++L + +L PVI L+A SD+ + G DD+ +KP +++I L Sbjct: 61 GFQLIKRLTNEYKL---PVIILSAKNRDSDKILGLGLGADDFISKPFNPLEAVARIQAQL 117 Query: 241 ER*SHRREP 215 R EP Sbjct: 118 RRAFEFNEP 126
>TCSA_EMENI (Q9P896) Two-component system protein A (EC 2.7.13.3)| Length = 719 Score = 59.3 bits (142), Expect = 9e-09 Identities = 48/116 (41%), Positives = 65/116 (56%), Gaps = 7/116 (6%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRK-GLXVVLAHDGA-AGVDTAR--REQP---DLILMDMSLP 431 +LLVEDN N T + G + DGA G + R R++P D+ILMD+S+P Sbjct: 561 VLLVEDNIVNHTRYVEAPTYQFGFQRI---DGAWNGAEAVRMVRQKPLSYDIILMDVSMP 617 Query: 430 VMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLL 263 V+DG AT Q++ D L P+IA+T +AM D E IA G DD KP+ +LL Sbjct: 618 VLDGLAATEQIR-DMGLTM-PIIAITGNAMKGDAETYIAQGMDDCICKPVHRDQLL 671
>YCF27_CYACA (Q9TLQ4) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 249 Score = 58.9 bits (141), Expect = 1e-08 Identities = 34/118 (28%), Positives = 60/118 (50%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 +L+V+D + +L RLT G V A +G + DLI++D+ +P +DG+ Sbjct: 14 LLIVDDENNIRKILQTRLTLLGYSVSTACNGEEALKIFTTHSIDLIILDVMMPKLDGYGV 73 Query: 409 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 ++++ + ++ P+I LTA D+ + G DDY KP L ++I +L R Sbjct: 74 CQEIRKESDI---PIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELEARIQSILRR 128
>QSEB_ECOLI (P52076) Transcriptional regulatory protein qseB| Length = 219 Score = 58.5 bits (140), Expect = 1e-08 Identities = 35/119 (29%), Positives = 61/119 (51%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +ILL+ED+ D + L++ G V G G + D +++D++LP MDG + Sbjct: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R+ + Q+ PV+ LTA ++R + + G DDY KP L + +++ L+ R Sbjct: 62 ILREWREKG--QREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118
>QSEB_ECO57 (Q8XBS3) Transcriptional regulatory protein qseB| Length = 219 Score = 58.2 bits (139), Expect = 2e-08 Identities = 35/119 (29%), Positives = 60/119 (50%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +ILL+ED+ D + L++ G V G G + D +++D++LP MDG + Sbjct: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R+ + Q+ PV+ LTA +R + + G DDY KP L + +++ L+ R Sbjct: 62 ILREWREKG--QREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118
>CPXR_HAEIN (P44895) Transcriptional regulatory protein cpxR homolog| Length = 227 Score = 58.2 bits (139), Expect = 2e-08 Identities = 36/121 (29%), Positives = 65/121 (53%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 M+K+LLV+D+ + ++LS L +G V A++G + E L+L+D+ +P ++G Sbjct: 1 MSKLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLN-ESYKLVLLDVMMPKLNG 59 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 E ++++ ++ PV+ LTA DR + G DD KP L+++I +L Sbjct: 60 IETLKEIR---KVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILR 116 Query: 238 R 236 R Sbjct: 117 R 117
>PHOP_SALTY (P14146) Virulence transcriptional regulatory protein phoP| Length = 224 Score = 57.8 bits (138), Expect = 3e-08 Identities = 35/121 (28%), Positives = 59/121 (48%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 M ++L+VEDN L +L G V A D PD+ ++D+ LP DG Sbjct: 1 MMRVLVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPDEDG 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 R+ ++ PV+ LTA D+ + +++G DDY TKP + +++++ L+ Sbjct: 61 LSLIRRWRSSDV--SLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118 Query: 238 R 236 R Sbjct: 119 R 119
>PHOP_SALTI (Q8Z7H2) Virulence transcriptional regulatory protein phoP| Length = 224 Score = 57.8 bits (138), Expect = 3e-08 Identities = 35/121 (28%), Positives = 59/121 (48%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 M ++L+VEDN L +L G V A D PD+ ++D+ LP DG Sbjct: 1 MMRVLVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPDEDG 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 R+ ++ PV+ LTA D+ + +++G DDY TKP + +++++ L+ Sbjct: 61 LSLIRRWRSSDV--SLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118 Query: 238 R 236 R Sbjct: 119 R 119
>PHOP_SALPA (Q5PMJ1) Virulence transcriptional regulatory protein phoP| Length = 224 Score = 57.8 bits (138), Expect = 3e-08 Identities = 35/121 (28%), Positives = 59/121 (48%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 M ++L+VEDN L +L G V A D PD+ ++D+ LP DG Sbjct: 1 MMRVLVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPDEDG 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 R+ ++ PV+ LTA D+ + +++G DDY TKP + +++++ L+ Sbjct: 61 LSLIRRWRSSDV--SLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118 Query: 238 R 236 R Sbjct: 119 R 119
>CHEY_BACSU (P24072) Chemotaxis protein cheY homolog| Length = 119 Score = 57.4 bits (137), Expect = 3e-08 Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGW 416 +IL+V+D M+ L + G VV A +GA V+ + PDL+ MD+++P MDG Sbjct: 3 RILIVDDAAFMRMMIKDILVKNGFEVVAEAENGAQAVEKYKEHSPDLVTMDITMPEMDGI 62 Query: 415 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 242 A +++K Q +I +A S AI AG D+ KP + R+L I + L Sbjct: 63 TALKEIKQID--AQARIIMCSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTL 118
>ZRAR_SALTY (P25852) Transcriptional regulatory protein zraR| Length = 441 Score = 57.4 bits (137), Expect = 3e-08 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 1/129 (0%) Frame = -1 Query: 601 GMTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMD 422 G IL+V+D+ + +L L G V LA+ G + R + DL+L D+ + MD Sbjct: 4 GKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMD 63 Query: 421 GWEATRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 245 G +++KA +P + P++ +TA + +A+ AG DY KP++ RL + + Sbjct: 64 GIATLKEIKALNPAI---PILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKA 120 Query: 244 LER*SHRRE 218 L +H RE Sbjct: 121 L---AHTRE 126
>ZRAR_SALTI (Q8Z333) Transcriptional regulatory protein zraR| Length = 441 Score = 57.4 bits (137), Expect = 3e-08 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 1/129 (0%) Frame = -1 Query: 601 GMTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMD 422 G IL+V+D+ + +L L G V LA+ G + R + DL+L D+ + MD Sbjct: 4 GKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMD 63 Query: 421 GWEATRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 245 G +++KA +P + P++ +TA + +A+ AG DY KP++ RL + + Sbjct: 64 GIATLKEIKALNPAI---PILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKA 120 Query: 244 LER*SHRRE 218 L +H RE Sbjct: 121 L---AHTRE 126
>CIAR_STRR6 (P0A4H8) Transcriptional regulatory protein ciaR| Length = 224 Score = 57.4 bits (137), Expect = 3e-08 Identities = 43/125 (34%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Frame = -1 Query: 598 MTKILLVEDN----EDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLP 431 M KILLVED+ +D L V+ DG G+ A DLIL+D+ LP Sbjct: 1 MIKILLVEDDLGLSNSVFDFLD-----DFADVMQVFDGEEGLYEAESGVYDLILLDLMLP 55 Query: 430 VMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIA 251 +G++ ++L+ TPV+ +TA D+ G DDY TKP L L +I Sbjct: 56 EKNGFQVLKELREKGIT--TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQ 113 Query: 250 QLLER 236 LL+R Sbjct: 114 ALLKR 118
>CIAR_STRPN (P0A4H7) Transcriptional regulatory protein ciaR| Length = 224 Score = 57.4 bits (137), Expect = 3e-08 Identities = 43/125 (34%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Frame = -1 Query: 598 MTKILLVEDN----EDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLP 431 M KILLVED+ +D L V+ DG G+ A DLIL+D+ LP Sbjct: 1 MIKILLVEDDLGLSNSVFDFLD-----DFADVMQVFDGEEGLYEAESGVYDLILLDLMLP 55 Query: 430 VMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIA 251 +G++ ++L+ TPV+ +TA D+ G DDY TKP L L +I Sbjct: 56 EKNGFQVLKELREKGIT--TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQ 113 Query: 250 QLLER 236 LL+R Sbjct: 114 ALLKR 118
>PETR_RHOCA (P31079) Protein petR| Length = 245 Score = 57.4 bits (137), Expect = 3e-08 Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 4/122 (3%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAG--VDTARREQPDLILMDMSLPVMDGW 416 +L+V+D+E +L + L R G V D A + T + +LI++D+ +P DG Sbjct: 9 LLIVDDDERIRGLLQKFLIRNGFLVTAGRDAAHARRLFTLSGLEFNLIVLDVMMPGEDGL 68 Query: 415 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDY--DTKPIELPRLLSKIAQLL 242 TR L+ TP++ LTA +R + + AG DDY KP E LL +I +L Sbjct: 69 SLTRDLRTK---MATPILLLTARGETRERIEGLEAGADDYLFTPKPFEPKELLLRINAIL 125 Query: 241 ER 236 R Sbjct: 126 RR 127
>ZRAR_KLEOX (Q9APD9) Transcriptional regulatory protein zraR| Length = 443 Score = 57.4 bits (137), Expect = 3e-08 Identities = 34/117 (29%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 IL+V+D+ + +L L G V LA++G ++ R + DL+L D+ + MDG E Sbjct: 8 ILVVDDDISHCTILQALLRGWGYRVALANNGLQALEKVREKVFDLVLCDIRMAEMDGIET 67 Query: 409 TRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 242 +++K +P + PV+ +TA++ +A+ +G DY KP++ +L +++ L Sbjct: 68 LKEIKTFNPSI---PVLIMTAYSSVDTAVEALKSGALDYLIKPLDFDKLQLTLSEAL 121
>SP0A_BACAN (P52928) Stage 0 sporulation protein A| Length = 264 Score = 56.6 bits (135), Expect = 6e-08 Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDG 419 K+ LV+DN++ ML + + V+ A++G ++ + +QPD++++D+ +P +DG Sbjct: 5 KVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDG 64 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 245 +++ L+Q VI LTA +KA+ G + KP ++ L S I Q+ Sbjct: 65 LAVLEKMRHIERLRQPSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQV 122
>BAER_ECOLI (P69228) Transcriptional regulatory protein baeR| Length = 240 Score = 56.6 bits (135), Expect = 6e-08 Identities = 36/125 (28%), Positives = 57/125 (45%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+VED +L L L G + R+ PDLIL+D+ LP DG Sbjct: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER* 233 R+++ P++ +TA DR + G DDY KP +++++ +L R Sbjct: 72 LCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 Query: 232 SHRRE 218 +RE Sbjct: 129 KPQRE 133
>BAER_ECOL6 (P69229) Transcriptional regulatory protein baeR| Length = 240 Score = 56.6 bits (135), Expect = 6e-08 Identities = 36/125 (28%), Positives = 57/125 (45%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+VED +L L L G + R+ PDLIL+D+ LP DG Sbjct: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER* 233 R+++ P++ +TA DR + G DDY KP +++++ +L R Sbjct: 72 LCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 Query: 232 SHRRE 218 +RE Sbjct: 129 KPQRE 133
>PILG_PSEAE (P46384) Protein pilG| Length = 135 Score = 56.2 bits (134), Expect = 7e-08 Identities = 31/113 (27%), Positives = 55/113 (48%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 K+++++D++ L + G V+ A DG + P++I +D+ +P +DG++ Sbjct: 9 KVMVIDDSKTIRRTAETLLKKVGCDVITAIDGFDALAKIADTHPNIIFVDIMMPRLDGYQ 68 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 254 +K + + TPVI L++ D+ K G D Y TKP LL I Sbjct: 69 TCALIKNNSAFKSTPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAI 121
>CHEB_HALMA (Q5V0B3) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 369 Score = 56.2 bits (134), Expect = 7e-08 Identities = 38/125 (30%), Positives = 68/125 (54%), Gaps = 8/125 (6%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGW 416 + ++ +D+ ++S L+ G+ VV A DG V +PD++ MD+ +PVM+G Sbjct: 6 RAVVADDSHFMRSVISDILSDGGIDVVAQARDGEEAVSAVIEHRPDVVTMDVEMPVMNGI 65 Query: 415 EATRQLKADPELQQTPVIALTAHA--MASDREKAIAAGCDDYDTKP-----IELPRLLSK 257 EAT ++ A+ TPV+ L+AH A +A+ G D+ TKP +E+ RL + Sbjct: 66 EATERIMAE---SPTPVLMLSAHTDENADVTFEALDKGAVDFFTKPGGEVSMEMSRLKDQ 122 Query: 256 IAQLL 242 + +++ Sbjct: 123 LVEMV 127
>LUXQ_VIBPA (Q87GU5) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 858 Score = 55.8 bits (133), Expect = 1e-07 Identities = 36/105 (34%), Positives = 55/105 (52%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 K+LLVEDN N +L T+ + V A DG ++ + DLILMD LP + G E Sbjct: 735 KVLLVEDNHTNAFILKAFCTKYKMQVDWAKDGLEAMEFLKDHSYDLILMDNQLPHLGGIE 794 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 278 T++++ + +L TP+ A TA + + AG + KPI+ Sbjct: 795 TTKEIRQNLKL-GTPIYACTADTAQETSDAFMEAGANYVLLKPIK 838
>PHOP_SHIFL (Q83RR0) Virulence transcriptional regulatory protein phoP| Length = 223 Score = 55.8 bits (133), Expect = 1e-07 Identities = 33/119 (27%), Positives = 59/119 (49%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 ++L+VEDN L ++ G V A D PD+ ++D+ LP DG Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLS 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R+ +++ P++ LTA D+ + ++AG DDY TKP + +++++ L+ R Sbjct: 62 LIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118
>PHOP_ECOL6 (Q8CXZ9) Transcriptional regulatory protein phoP| Length = 223 Score = 55.8 bits (133), Expect = 1e-07 Identities = 33/119 (27%), Positives = 59/119 (49%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 ++L+VEDN L ++ G V A D PD+ ++D+ LP DG Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLS 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R+ +++ P++ LTA D+ + ++AG DDY TKP + +++++ L+ R Sbjct: 62 LIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118
>PHOP_SALCH (Q57QC3) Virulence transcriptional regulatory protein phoP| Length = 224 Score = 55.8 bits (133), Expect = 1e-07 Identities = 34/121 (28%), Positives = 58/121 (47%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 M ++L+VEDN L +L G V D PD+ ++D+ LP DG Sbjct: 1 MMRVLVVEDNALLRHHLKVQLQDSGHQVDATEDAREADYYLNEHLPDIAIVDLGLPDEDG 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 R+ ++ PV+ LTA D+ + +++G DDY TKP + +++++ L+ Sbjct: 61 LSLIRRWRSSDI--SLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118 Query: 238 R 236 R Sbjct: 119 R 119
>CHEB_ARCFU (O29221) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 349 Score = 55.8 bits (133), Expect = 1e-07 Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGW 416 ++L+V+D+ ++ LT+ G+ VV A +G V+ A + +PD+I +D+++P MDG Sbjct: 2 RVLVVDDSALVRMAVTDILTKAGIEVVDTAKNGREAVEKALKLKPDVITLDINMPEMDGL 61 Query: 415 EATRQLKADPELQQTPVIALTAHAMASDRE--KAIAAGCDDYDTKPIELPRLLSKIAQLL 242 A LK E Q TPV+ L++ RE +A+ G D+ TKP LS +AQ L Sbjct: 62 TA---LKLIMEKQPTPVVMLSSLTKEGARETLEALKIGAVDFVTKPDGALVDLSSVAQEL 118 Query: 241 ER 236 R Sbjct: 119 VR 120
>SP0A_BACTU (P0A4I4) Stage 0 sporulation protein A| Length = 264 Score = 55.5 bits (132), Expect = 1e-07 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDG 419 K+ LV+DN++ ML + + V+ A++G ++ +QPD++++D+ +P +DG Sbjct: 5 KVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDG 64 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 245 +++ L+Q VI LTA +KA+ G + KP ++ L S I Q+ Sbjct: 65 LAVLEKMRHIERLKQPSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQV 122
>SP0A_BACCR (P0A4I3) Stage 0 sporulation protein A| Length = 264 Score = 55.5 bits (132), Expect = 1e-07 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDG 419 K+ LV+DN++ ML + + V+ A++G ++ +QPD++++D+ +P +DG Sbjct: 5 KVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDG 64 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 245 +++ L+Q VI LTA +KA+ G + KP ++ L S I Q+ Sbjct: 65 LAVLEKMRHIERLKQPSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQV 122
>YCF29_CYAPA (P48359) Probable transcriptional regulator ycf29| Length = 210 Score = 55.5 bits (132), Expect = 1e-07 Identities = 36/121 (29%), Positives = 57/121 (47%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 M IL+++ + + L LT G V + D +R++ DLI+ D+ +P M G Sbjct: 1 MINILILDTDIGIRNSLKLYLTEIGFHVEESTCVDQAWDILKRKKIDLIICDIIMPGMGG 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 + QL+ + + PVI LT + DR GCD Y +KP + L+ I +L Sbjct: 61 FNFLHQLRLNTDYCTLPVILLTTRGLTQDRIIGYKTGCDSYISKPFNIEELVVIIEGVLN 120 Query: 238 R 236 R Sbjct: 121 R 121
>VANR_ENTFA (Q47744) Regulatory protein vanRB| Length = 220 Score = 55.5 bits (132), Expect = 1e-07 Identities = 36/119 (30%), Positives = 60/119 (50%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +ILLVED++ + + L V DG L+++D+ LP M+G E Sbjct: 4 RILLVEDDDHICNTVRAFLAEARYEVDACTDGNEAHTKFYENTYQLVILDIMLPGMNGHE 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R+ +A + TP++ +TA + ++ +A A DDY TKP ++ LL ++ LL R Sbjct: 64 LLREFRAQND---TPILMMTALSDDENQIRAFDAEADDYVTKPFKMRILLKRVEALLRR 119
>PHOP_ECOLI (P23836) Transcriptional regulatory protein phoP| Length = 223 Score = 55.5 bits (132), Expect = 1e-07 Identities = 33/119 (27%), Positives = 59/119 (49%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 ++L+VEDN L ++ G V A D PD+ ++D+ LP DG Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R+ +++ P++ LTA D+ + ++AG DDY TKP + +++++ L+ R Sbjct: 62 LIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118
>BCER_BACHD (Q9K621) Sensory transduction protein bceR| Length = 231 Score = 55.5 bits (132), Expect = 1e-07 Identities = 32/121 (26%), Positives = 61/121 (50%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 M KI+L+ED+ + + RL++ V + ++ +PDL+++D+ LP DG Sbjct: 1 MFKIMLIEDDHTLFSEIKERLSQWSYDVFGVSNFEKVIEEFTSLKPDLVIIDIQLPKFDG 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 + R ++ + P+I L++ +D ++ G DD+ KP L++KI +L Sbjct: 61 FHWCRMIR---QHSNVPIIFLSSRDHPTDMVMSMQLGADDFIQKPFHFDVLVAKIQAILR 117 Query: 238 R 236 R Sbjct: 118 R 118
>ZRAR_ECOLI (P14375) Transcriptional regulatory protein zraR| Length = 441 Score = 55.1 bits (131), Expect = 2e-07 Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 IL+V+D+ + +L L G V LA+ G ++ R + DL+L D+ + MDG Sbjct: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 Query: 409 TRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 242 +++KA +P + PV+ +TA++ +A+ G DY KP++ L + + + L Sbjct: 68 LKEIKALNPAI---PVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121
>OMPR_SHIFL (P0AA21) Transcriptional regulatory protein ompR| Length = 239 Score = 54.7 bits (130), Expect = 2e-07 Identities = 38/119 (31%), Positives = 58/119 (48%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KIL+V+D+ +L R LT +G V + RE L+++D+ LP DG Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>OMPR_SALTY (P0AA19) Transcriptional regulatory protein ompR| Length = 239 Score = 54.7 bits (130), Expect = 2e-07 Identities = 38/119 (31%), Positives = 58/119 (48%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KIL+V+D+ +L R LT +G V + RE L+++D+ LP DG Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>OMPR_SALTI (P0AA20) Transcriptional regulatory protein ompR| Length = 239 Score = 54.7 bits (130), Expect = 2e-07 Identities = 38/119 (31%), Positives = 58/119 (48%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KIL+V+D+ +L R LT +G V + RE L+++D+ LP DG Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>OMPR_ECOLI (P0AA16) Transcriptional regulatory protein ompR| Length = 239 Score = 54.7 bits (130), Expect = 2e-07 Identities = 38/119 (31%), Positives = 58/119 (48%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KIL+V+D+ +L R LT +G V + RE L+++D+ LP DG Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>OMPR_ECOL6 (P0AA17) Transcriptional regulatory protein ompR| Length = 239 Score = 54.7 bits (130), Expect = 2e-07 Identities = 38/119 (31%), Positives = 58/119 (48%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KIL+V+D+ +L R LT +G V + RE L+++D+ LP DG Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>OMPR_ECO57 (P0AA18) Transcriptional regulatory protein ompR| Length = 239 Score = 54.7 bits (130), Expect = 2e-07 Identities = 38/119 (31%), Positives = 58/119 (48%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KIL+V+D+ +L R LT +G V + RE L+++D+ LP DG Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>CHEB_NATPD (Q3IRR4) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 355 Score = 54.7 bits (130), Expect = 2e-07 Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 3/104 (2%) Frame = -1 Query: 586 LLVEDNEDNWDMLSRRLTRKGLXVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 ++V+D++ ++S L G+ VV A +G +GV+ R +PD++ MD+ +P MDG EA Sbjct: 9 VVVDDSQFMRTVISDMLDDAGITVVATASNGESGVEAVRTHEPDVVTMDLKMPGMDGIEA 68 Query: 409 TRQLKADPELQQTPVIALTAHA--MASDREKAIAAGCDDYDTKP 284 T ++ + TPV+ L+AHA A +A+ G D+ KP Sbjct: 69 TGRIMDE---CPTPVLVLSAHADDGAELTFEAMDEGAVDFFKKP 109
>BCER_BACSU (O34951) Sensory transduction protein bceR| Length = 231 Score = 54.7 bits (130), Expect = 2e-07 Identities = 33/124 (26%), Positives = 59/124 (47%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 M K+LL+ED+E + + RLT V D + + PD +++D+ LP DG Sbjct: 1 MFKLLLIEDDESLFHEIKDRLTGWSYDVYGIQDFSQVLQEFAAVNPDCVIIDVQLPKFDG 60 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 + R +++ P++ L++ +D ++ G DD+ KP L++KI + Sbjct: 61 FHWCRLIRS---RSNVPILFLSSRDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAMFR 117 Query: 238 R*SH 227 R H Sbjct: 118 RVHH 121
>NTRC_KLEPN (P03029) Nitrogen assimilation regulatory protein| Length = 469 Score = 54.7 bits (130), Expect = 2e-07 Identities = 33/121 (27%), Positives = 57/121 (47%) Frame = -1 Query: 577 EDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL 398 +D+ W +L R LT GL G +D + PD++L D+ +P MDG +Q+ Sbjct: 11 DDSSIRW-VLERALTGAGLSCTTFESGNEVLDALTTKTPDVLLSDIRMPGMDGLALLKQI 69 Query: 397 KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 218 K + PVI +TAH+ A G DY KP ++ ++ + + + +++ Sbjct: 70 KQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVDRAISHYQEQQQ 127 Query: 217 P 215 P Sbjct: 128 P 128
>FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7.13.3)| Length = 777 Score = 54.7 bits (130), Expect = 2e-07 Identities = 32/102 (31%), Positives = 51/102 (50%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 ++LLV+D+ + G V A DG + DLIL D+ +P +DG+ Sbjct: 660 RVLLVDDSPIARATEGALVKALGHSVEEAQDGEEAYVKVQNNTYDLILTDVQMPKLDGFS 719 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 287 R+LK+ P + + PVI L++ A D+ + + AG D Y K Sbjct: 720 LARRLKSTPAVARIPVIILSSLASPEDKRRGLDAGADAYLVK 761
>ZRAR_ECO57 (Q8X613) Transcriptional regulatory protein zraR| Length = 441 Score = 54.3 bits (129), Expect = 3e-07 Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 IL+V+D+ + +L L G V LA+ G ++ R DL+L D+ + MDG Sbjct: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRERVFDLVLCDVRMAEMDGIAT 67 Query: 409 TRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 242 +++KA +P + PV+ +TA++ +A+ G DY KP++ L + + + L Sbjct: 68 LKEIKALNPAI---PVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121
>LUXQ_VIBCH (Q9KLK7) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 857 Score = 54.3 bits (129), Expect = 3e-07 Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 2/107 (1%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 ++LLVEDN N + + GL V DG ++ + DL+LMD LP +DG E Sbjct: 731 RVLLVEDNHTNAFIAQAFCRKYGLDVSWVTDGLQAIEELKIHDYDLVLMDNQLPYLDGVE 790 Query: 412 ATRQLKADPELQQTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIE 278 TR +K ++ PV+ A TA + R+ AG + KP++ Sbjct: 791 TTRTIK---KVLHLPVVVYACTADGLEETRQAFFHAGAEYVLVKPLK 834
>BVGS_BORPE (P16575) Virulence sensor protein bvgS precursor (EC 2.7.13.3)| Length = 1238 Score = 54.3 bits (129), Expect = 3e-07 Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 5/124 (4%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 ++L+V+D++ N +L ++L G V+ A G A + R D+++ D ++P + G+E Sbjct: 974 RVLVVDDHKPNLMLLRQQLDYLGQRVIAADSGEAALALWREHAFDVVITDCNMPGISGYE 1033 Query: 412 ATRQLKAD---PELQQTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 248 R+++A P +T I TA A + ++ AAG DD KPI + L ++ + Sbjct: 1034 LARRIRAAEAAPGYGRTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNE 1093 Query: 247 LLER 236 + R Sbjct: 1094 AVAR 1097
>NTRC_ECOLI (P0AFB8) Nitrogen regulation protein NR(I)| Length = 469 Score = 54.3 bits (129), Expect = 3e-07 Identities = 32/121 (26%), Positives = 58/121 (47%) Frame = -1 Query: 577 EDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL 398 +D+ W +L R L GL +GA ++ + PD++L D+ +P MDG +Q+ Sbjct: 11 DDSSIRW-VLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQI 69 Query: 397 KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 218 K + PVI +TAH+ A G DY KP ++ ++ + + + +++ Sbjct: 70 KQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 Query: 217 P 215 P Sbjct: 128 P 128
>NTRC_ECO57 (P0AFB9) Nitrogen regulation protein NR(I)| Length = 469 Score = 54.3 bits (129), Expect = 3e-07 Identities = 32/121 (26%), Positives = 58/121 (47%) Frame = -1 Query: 577 EDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL 398 +D+ W +L R L GL +GA ++ + PD++L D+ +P MDG +Q+ Sbjct: 11 DDSSIRW-VLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQI 69 Query: 397 KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 218 K + PVI +TAH+ A G DY KP ++ ++ + + + +++ Sbjct: 70 KQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 Query: 217 P 215 P Sbjct: 128 P 128
>SP0F_BACSU (P06628) Sporulation initiation phosphotransferase F (EC 2.7.-.-)| (Stage 0 sporulation protein F) Length = 124 Score = 53.9 bits (128), Expect = 4e-07 Identities = 32/117 (27%), Positives = 59/117 (50%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KIL+V+D +L+ ++G A +G +D +E+PDL+L+DM +P MDG E Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIE 64 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 242 +++K E VI +TA+ +++ G + KP ++ + + + L Sbjct: 65 ILKRMKVIDE--NIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119
>TCSB_EMENI (Q9P4U6) Two-component system protein B precursor (EC 2.7.13.3) (NHK1| protein) (SLN1 homolog) Length = 1070 Score = 53.9 bits (128), Expect = 4e-07 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 6/120 (5%) Frame = -1 Query: 607 GLGMTKILLVEDNEDNWDMLSRRLTRKGLX-VVLAHDGAAGVDTARREQP-----DLILM 446 GL + L+ EDN N +++ R L + + V + DG DT + DLI M Sbjct: 929 GLKKIRALVAEDNVVNQEVVLRMLALEDVYDVTVVKDGQEAYDTVKANMEEGKVFDLIFM 988 Query: 445 DMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 266 D+ +P +DG E+TR ++ P++AL+A + S+ + + +G D + +KPI P L Sbjct: 989 DIQMPNLDGIESTRLIRQMG--CSAPIVALSAFSEDSNIKDCMNSGMDMFISKPIRRPAL 1046
>PMRA_PECCC (Q70FH0) Transcriptional regulatory protein pmrA| Length = 222 Score = 53.5 bits (127), Expect = 5e-07 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 9/128 (7%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPD---------LILMDM 440 K+L+VED+ +L ++GL + L+H+G A ++ D L+++D+ Sbjct: 2 KLLIVEDD---------KLLQEGLLLALSHEGYACDCAGTAKEADALIGSAHYSLVILDL 52 Query: 439 SLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLS 260 LP DG + + + Q PV+ LTA DR + G DDY KP L L + Sbjct: 53 GLPDDDGLALLSRWRKNN--YQHPVLILTARDKVDDRVSGLDVGADDYLAKPFALTELQA 110 Query: 259 KIAQLLER 236 ++ L+ R Sbjct: 111 RVRALIRR 118
>BASR_SALTY (P36556) Transcriptional regulatory protein basR/pmrA| Length = 222 Score = 53.5 bits (127), Expect = 5e-07 Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 9/134 (6%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAA--GVDTARREQPDL-------ILMDM 440 KIL+VED+ L +GL + +G A GV TAR + L +++D+ Sbjct: 2 KILIVEDDT---------LLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDL 52 Query: 439 SLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLS 260 LP DG +++ + PV+ LTAH +DR + G DDY KP L L + Sbjct: 53 GLPDEDGLHFLTRIRQ--KKYTLPVLILTAHDTLNDRITGLDVGADDYLVKPFALEELHA 110 Query: 259 KIAQLLER*SHRRE 218 +I LL R +++ E Sbjct: 111 RIRALLRRHNNQGE 124
>DCTR_BACME (P39486) Probable C4-dicarboxylate response regulator dctR| Length = 228 Score = 53.5 bits (127), Expect = 5e-07 Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTR-KGLXVVLA-HDGAAGVDTARREQPDLILMDMSLPVMDGW 416 +LL+ED+ ++ + + + +G V+ A +G GV ++ QPDL ++DM +P DG Sbjct: 8 VLLIEDDPMVQEVNRQFIEQVEGFTVIAAASNGLEGVQLIKQHQPDLTIIDMYMPSQDGL 67 Query: 415 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 248 +Q++A+ +T VIA+TA + K + G DY KP + R+ + Q Sbjct: 68 TTLQQIRANG--YKTDVIAVTAASDIETVRKVLQYGAVDYIMKPFKFERMKQALEQ 121
>CHEB_HALSA (Q9HQW6) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 347 Score = 53.5 bits (127), Expect = 5e-07 Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 17/211 (8%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVV-LAHDGAAGVDTARREQPDLILMDMSLPVMD 422 MT+ L+V+D+ ++S L G+ VV A +GA +D QPD+I MD+ +P MD Sbjct: 1 MTEALVVDDSHFMRTVISDILEDGGVDVVGTAENGARALDAVTDVQPDVITMDVEMPEMD 60 Query: 421 GWEATRQLKADPELQQTPVIALTAHAM--ASDREKAIAAGCDDYDTKP------------ 284 G EAT ++ + Q TP++ ++A A +A+ G D KP Sbjct: 61 GIEATAEIMRE---QPTPILMVSALTTEDADATLEAMEKGAIDTFAKPGGTISTELSGHS 117 Query: 283 IELPRLLSKIAQLLER*SH--RREPWLPP*PSTAMKLRRQFLLFGVGTTFTAIAAISLSD 110 EL + ++A H EP PP +T+ LL G T + L+ Sbjct: 118 EELVAAVERVASADPTAGHDVEMEPASPPDATTSEYADNPTLLIGASTGGPNVVESILAS 177 Query: 109 VITNTRLSESSREEVQSLLQEFDIKLIDRVD 17 + ++ VQ + +F + DR+D Sbjct: 178 LPAE---ADFRVLIVQHMPDQFTSRFADRLD 205
>REGX3_MYCLE (P54884) Sensory transduction protein regX3| Length = 198 Score = 53.5 bits (127), Expect = 5e-07 Identities = 30/89 (33%), Positives = 46/89 (51%) Frame = -1 Query: 502 DGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREK 323 DG A + R D++L+D+ LP M G + +QL+ + PVI +TA D+ Sbjct: 4 DGPAALAEFDRSGADIVLLDLMLPGMSGTDVYKQLRVRSSV---PVIMVTARDSEIDKVV 60 Query: 322 AIAAGCDDYDTKPIELPRLLSKIAQLLER 236 + G DDY TKP L+++I +L R Sbjct: 61 GLELGADDYVTKPYSARELIARIRAVLRR 89
>NTRC_PROVU (P28787) Nitrogen regulation protein NR(I)| Length = 473 Score = 53.1 bits (126), Expect = 6e-07 Identities = 33/121 (27%), Positives = 57/121 (47%) Frame = -1 Query: 577 EDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL 398 +D+ W +L R +TR+G+ + EQPD++L D+ +P MDG + + Sbjct: 11 DDSSIRW-VLERAITREGMLCRAFEHANDVLKALNSEQPDVLLSDIRMPDMDGLSLLKII 69 Query: 397 KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 218 K + PVI +TAH+ A G DY KP ++ L+ I + + +++ Sbjct: 70 KE--QYPTLPVIIMTAHSDLDAAVNAYQQGAFDYLPKPFDIDETLALIERAITHYREQKQ 127 Query: 217 P 215 P Sbjct: 128 P 128
>SP0A_MOOTA (P52941) Stage 0 sporulation protein A homolog| Length = 256 Score = 53.1 bits (126), Expect = 6e-07 Identities = 29/118 (24%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVV--LAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 K+L+ +DN + ++L + V+ +AH+G ++ + ++PD++++D+ +P +DG Sbjct: 5 KVLIADDNREFCEVLEEYFNEQEDFVLSGVAHNGQETLELIQEQEPDIVILDIIMPHLDG 64 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 245 +L+ + ++ LTA S +++ G D Y KP +L L +++ QL Sbjct: 65 IGVLEKLQVLNFEPRPKIVILTALGQESMTMRSVELGADYYILKPFDLEVLGNRLRQL 122
>LUXO_VIBVY (Q7MM78) Regulatory protein luxO| Length = 453 Score = 53.1 bits (126), Expect = 6e-07 Identities = 32/106 (30%), Positives = 49/106 (46%) Frame = -1 Query: 583 LVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 404 +VED + L G+ + + G +D+ + PDLIL+D+ LP M G + Sbjct: 1 MVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLH 60 Query: 403 QLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 266 +KA P+I +TAH +A+ G D+ KP E RL Sbjct: 61 AVKASH--PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRL 104
>LUXO_VIBVU (Q8CWJ5) Regulatory protein luxO| Length = 453 Score = 53.1 bits (126), Expect = 6e-07 Identities = 32/106 (30%), Positives = 49/106 (46%) Frame = -1 Query: 583 LVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 404 +VED + L G+ + + G +D+ + PDLIL+D+ LP M G + Sbjct: 1 MVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLH 60 Query: 403 QLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 266 +KA P+I +TAH +A+ G D+ KP E RL Sbjct: 61 AVKASH--PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRL 104
>PILR_PSEAE (Q00934) Type 4 fimbriae expression regulatory protein pilR| Length = 445 Score = 53.1 bits (126), Expect = 6e-07 Identities = 38/117 (32%), Positives = 56/117 (47%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 K L+V+D D ++L L R L A + + RE DL L DM LP G + Sbjct: 5 KALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLD 64 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 242 + ++ QTPV +TA+ +A+ AG D+ TKP++L RL +A L Sbjct: 65 LVQYIQQ--RHPQTPVAMITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATAL 119
>SP0A_CLOPA (P52940) Stage 0 sporulation protein A homolog| Length = 273 Score = 53.1 bits (126), Expect = 6e-07 Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVV--LAHDGAAGVDTARREQPDLILMDMSLPVMDGW 416 +L+ +DN++ ++L+ L + VV +A DG + ++PDL+++D+ +P MDG Sbjct: 8 VLIADDNKEFCNILNDYLLNQSDIVVVGIAKDGIEALKLIEEKKPDLVILDIIMPNMDGL 67 Query: 415 EATRQLKADPELQQTP-VIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 245 +L A+ + P VI L+A ++AI G D Y KP ++ +I Q+ Sbjct: 68 VVLEKL-ANINIDPVPNVIVLSAVGQDKITQRAITLGADYYVVKPFDMDVFTKRIRQM 124
>PHOP_ECO57 (Q8X738) Transcriptional regulatory protein phoP| Length = 223 Score = 52.8 bits (125), Expect = 8e-07 Identities = 32/119 (26%), Positives = 58/119 (48%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 ++L+VEDN L ++ G V A D PD+ ++D+ LP DG Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLS 61 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 + +++ P++ LTA D+ + ++AG DDY TKP + +++++ L+ R Sbjct: 62 LICRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118
>HNR_SHIFL (P0AEV3) Protein hnr| Length = 337 Score = 52.8 bits (125), Expect = 8e-07 Identities = 31/105 (29%), Positives = 56/105 (53%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+VED + +L + G VLA DG ++ PDL++ D+++P M+G + Sbjct: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 278 ++ + QTPV+ ++A +D KA+ G +D KP++ Sbjct: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>HNR_ECOLI (P0AEV1) Protein hnr| Length = 337 Score = 52.8 bits (125), Expect = 8e-07 Identities = 31/105 (29%), Positives = 56/105 (53%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+VED + +L + G VLA DG ++ PDL++ D+++P M+G + Sbjct: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 278 ++ + QTPV+ ++A +D KA+ G +D KP++ Sbjct: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>HNR_ECO57 (P0AEV2) Protein hnr| Length = 337 Score = 52.8 bits (125), Expect = 8e-07 Identities = 31/105 (29%), Positives = 56/105 (53%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 +IL+VED + +L + G VLA DG ++ PDL++ D+++P M+G + Sbjct: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 278 ++ + QTPV+ ++A +D KA+ G +D KP++ Sbjct: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>LUXQ_VIBHA (P54302) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 859 Score = 52.8 bits (125), Expect = 8e-07 Identities = 36/105 (34%), Positives = 52/105 (49%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 K+LLVEDN N +L + + V A DG ++ DLILMD LP + G E Sbjct: 736 KVLLVEDNHTNAFILQAFCKKYKMQVDWAKDGLDAMELLSDTTYDLILMDNQLPHLGGIE 795 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 278 T +++ + L TP+ A TA + +AAG + KPI+ Sbjct: 796 TTHEIRQNLRL-GTPIYACTADTAKETSDAFMAAGANYVMLKPIK 839
>NISR_LACLA (Q07597) Nisin biosynthesis regulatory protein nisR| Length = 229 Score = 52.4 bits (124), Expect = 1e-06 Identities = 31/119 (26%), Positives = 63/119 (52%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KIL+V+D+++ ++ L + V + + +D + DLIL+D+ + ++G E Sbjct: 4 KILIVDDDQEILKLMKTALEMRNYEVATHQNISLPLDITDFQGFDLILLDIMMSNIEGTE 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 ++++ + TP+I ++A D + G DDY TKP L +L++K+ ++R Sbjct: 64 ICKRIRREIS---TPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKR 119
>BVGS_BORPA (P40330) Virulence sensor protein bvgS precursor (EC 2.7.13.3)| Length = 1238 Score = 52.4 bits (124), Expect = 1e-06 Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 5/124 (4%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 ++L+V+D++ N +L ++L G VV A G A + D+++ D ++P ++G+E Sbjct: 974 RVLVVDDHKPNLMLLRQQLDYLGQRVVAADSGEAALALWHEHAFDVVITDCNMPGINGYE 1033 Query: 412 ATRQLKAD---PELQQTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 248 R+++A P +T I TA A + ++ AAG DD KPI + L ++ + Sbjct: 1034 LARRIRAAEAAPGYGRTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNE 1093 Query: 247 LLER 236 R Sbjct: 1094 AAAR 1097
>BVGS_BORBR (P26762) Virulence sensor protein bvgS precursor (EC 2.7.13.3)| Length = 1238 Score = 52.4 bits (124), Expect = 1e-06 Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 5/124 (4%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 ++L+V+D++ N +L ++L G VV A G A + D+++ D ++P ++G+E Sbjct: 974 RVLVVDDHKPNLMLLRQQLDYLGQRVVAADSGEAALALWHEHAFDVVITDCNMPGINGYE 1033 Query: 412 ATRQLKAD---PELQQTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 248 R+++A P +T I TA A + ++ AAG DD KPI + L ++ + Sbjct: 1034 LARRIRAAEAAPGYGRTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNE 1093 Query: 247 LLER 236 R Sbjct: 1094 AAAR 1097
>LUXN_VIBHA (P54301) Autoinducer 1 sensor kinase/phosphatase luxN (EC 2.7.13.3)| (EC 3.1.3.-) Length = 849 Score = 52.4 bits (124), Expect = 1e-06 Identities = 28/83 (33%), Positives = 53/83 (63%), Gaps = 1/83 (1%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 +L+V+D E ++ L + G+ + A++G V+ + DLILMD+ +PVM+G++A Sbjct: 723 VLIVDDKEVQRALVQMYLNQLGVNSLQANNGENAVEVFKANHVDLILMDVQMPVMNGFDA 782 Query: 409 TRQLKADPELQ-QTPVIALTAHA 344 ++++K EL QTP++AL+ + Sbjct: 783 SQRIK---ELSPQTPIVALSGES 802
>CHEY_PSEAE (Q51455) Chemotaxis protein cheY| Length = 124 Score = 52.0 bits (123), Expect = 1e-06 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLX-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 416 KIL+V+D ++ L G A DG + D ++ D ++P M G Sbjct: 2 KILIVDDFSTMRRIIKNLLRDLGFTNTAEADDGTTALPMLHSGNFDFLVTDWNMPGMTGI 61 Query: 415 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 + R ++AD L+ PV+ +TA A +A AG + Y KP L KI ++ ER Sbjct: 62 DLLRAVRADERLKHLPVLMVTAEAKRDQIIEAAQAGVNGYVVKPFTAQVLKEKIEKIFER 121
>CHVI_RHISN (P50351) Transcriptional regulatory protein chvI| Length = 238 Score = 52.0 bits (123), Expect = 1e-06 Identities = 39/126 (30%), Positives = 60/126 (47%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 M I LV+D+ + +S L +G V D +A ++ P L + D+ +P MDG Sbjct: 1 MQTIALVDDDRNILTSVSIALEAEGYKVETYTDRSA-LEGLLARPPHLAIFDIKMPRMDG 59 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 E R+L+ +L PVI LT+ D + G DD+ TKP L+ ++ +L Sbjct: 60 MELLRRLRQKSDL---PVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILR 116 Query: 238 R*SHRR 221 R S R Sbjct: 117 RASGPR 122
>VRAR_STAAW (Q7A0I0) Response regulator protein vraR| Length = 209 Score = 52.0 bits (123), Expect = 1e-06 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 3/105 (2%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 422 K+L V+D+E +S L+ + + + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMD 62 Query: 421 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 287 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAU (P0C0Z1) Response regulator protein vraR| Length = 209 Score = 52.0 bits (123), Expect = 1e-06 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 3/105 (2%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 422 K+L V+D+E +S L+ + + + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMD 62 Query: 421 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 287 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAS (Q6G850) Response regulator protein vraR| Length = 209 Score = 52.0 bits (123), Expect = 1e-06 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 3/105 (2%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 422 K+L V+D+E +S L+ + + + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMD 62 Query: 421 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 287 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAR (Q6GFH3) Response regulator protein vraR| Length = 209 Score = 52.0 bits (123), Expect = 1e-06 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 3/105 (2%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 422 K+L V+D+E +S L+ + + + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMD 62 Query: 421 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 287 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAN (Q7A4R9) Response regulator protein vraR| Length = 209 Score = 52.0 bits (123), Expect = 1e-06 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 3/105 (2%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 422 K+L V+D+E +S L+ + + + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMD 62 Query: 421 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 287 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAM (Q7A2Q1) Response regulator protein vraR| Length = 209 Score = 52.0 bits (123), Expect = 1e-06 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 3/105 (2%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 422 K+L V+D+E +S L+ + + + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMD 62 Query: 421 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 287 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAC (Q5HEP0) Response regulator protein vraR| Length = 209 Score = 52.0 bits (123), Expect = 1e-06 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 3/105 (2%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 422 K+L V+D+E +S L+ + + + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMDDMD 62 Query: 421 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 287 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>LUXO_VIBPA (Q87MX7) Regulatory protein luxO| Length = 453 Score = 51.6 bits (122), Expect = 2e-06 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Frame = -1 Query: 583 LVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 404 +VED + LT G+ + + G +++ PDLIL+D+ LP M G + Sbjct: 1 MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLH 60 Query: 403 QL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 266 + K+ P++ P+I +TAH +A+ G D+ KP E RL Sbjct: 61 AVKKSHPDV---PIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRL 104
>LUXO_VIBHA (P54299) Luminescence regulatory protein luxO| Length = 453 Score = 51.6 bits (122), Expect = 2e-06 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Frame = -1 Query: 583 LVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 404 +VED + LT G+ + + G +++ PDLIL+D+ LP M G + Sbjct: 1 MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLH 60 Query: 403 QL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 266 + K+ P++ P+I +TAH +A+ G D+ KP E RL Sbjct: 61 AVKKSHPDV---PIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRL 104
>SPAR_BACSU (P33112) Subtilin biosynthesis regulatory protein spaR| Length = 220 Score = 51.6 bits (122), Expect = 2e-06 Identities = 38/121 (31%), Positives = 60/121 (49%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 M KIL V+D +D +L + + R+ V D G + DLIL+D+ +P +DG Sbjct: 1 MAKILAVDDEKDIL-VLIQNILRRDQHQVDILDHVHGQPPDVFQGYDLILLDVMMPDIDG 59 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 239 +E +Q++ L P++ LTA K + G DDY TKP + L +++ L Sbjct: 60 FELCKQIRP---LVDCPILFLTAKTEEEAIVKGLITGGDDYITKPFGVRELSARVNAHLR 116 Query: 238 R 236 R Sbjct: 117 R 117
>VRAR_STAES (Q8CNP9) Response regulator protein vraR| Length = 209 Score = 51.6 bits (122), Expect = 2e-06 Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 4/106 (3%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRL-TRKGLXVVLAHDGAAGVDT---ARREQPDLILMDMSLPVM 425 K+L V+D+E +S L T++ + VV +GA+G D A +PDLILMD+ + M Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQEDIEVV--GEGASGKDAITKAHELKPDLILMDLLMDDM 61 Query: 424 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 287 DG EAT ++K D L Q V+ LT+ + +A+ +G D Y K Sbjct: 62 DGVEATTEIKKD--LPQIKVVMLTSFIEDKEVYRALDSGVDSYILK 105
>VRAR_STAEQ (Q5HN50) Response regulator protein vraR| Length = 209 Score = 51.6 bits (122), Expect = 2e-06 Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 4/106 (3%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRL-TRKGLXVVLAHDGAAGVDT---ARREQPDLILMDMSLPVM 425 K+L V+D+E +S L T++ + VV +GA+G D A +PDLILMD+ + M Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQEDIEVV--GEGASGKDAITKAHELKPDLILMDLLMDDM 61 Query: 424 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 287 DG EAT ++K D L Q V+ LT+ + +A+ +G D Y K Sbjct: 62 DGVEATTEIKKD--LPQIKVVMLTSFIEDKEVYRALDSGVDSYILK 105
>SP0A_BREPA (P52929) Stage 0 sporulation protein A (Fragment)| Length = 212 Score = 51.2 bits (121), Expect = 2e-06 Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRK-GLXVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 ++LL +DN + +L ++ + + V+ +A++G V + PD++++D+ +P +DG Sbjct: 5 EVLLADDNREFVSLLEEYISSQYDMNVIGVAYNGNEVVRLLQERVPDVLILDIIMPHLDG 64 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 242 Q++A Q +I LTA +KA+ G Y KP ++ L +I Q++ Sbjct: 65 LAVLEQIQAMRLSPQPKIIMLTAFGQEEITKKAVELGAAYYILKPFDMEVLAQRIRQII 123
>RPFC_XANCP (P0C0F6) Sensory/regulatory protein rpfC (EC 2.7.13.3)| Length = 677 Score = 51.2 bits (121), Expect = 2e-06 Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 ++L+ +D+E N +L R L + G V+ + +D E D +++D+ +P M+G + Sbjct: 414 RMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLD 473 Query: 412 ATRQLKADPE--LQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 245 +QL+ ++ TPV+ L+A AG + KP+ +LL +A L Sbjct: 474 MLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADL 531
>SP0A_CLOBE (P52936) Stage 0 sporulation protein A homolog (Fragment)| Length = 223 Score = 51.2 bits (121), Expect = 2e-06 Identities = 31/118 (26%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVV--LAHDGAAGVDTARREQPDLILMDMSLPVMDGW 416 +L+ +DN++ +L+ L + VV +A DG+ ++ +PDL+++D+ +P +DG Sbjct: 8 VLIADDNKEFCSILNDYLLNQKDIVVTGIAKDGSEALELIVERKPDLVILDIIMPHLDGL 67 Query: 415 EATRQLKADPELQQTP-VIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 245 +L +L++ P +I L+A ++AI G D Y KP ++ +I ++ Sbjct: 68 GVLEKLNT-MQLEKVPRIIILSAVGQDKITQQAITLGADYYTVKPFDMEVFTKRIREM 124
>LUXO1_VIBCH (Q9KT84) Regulatory protein luxO| Length = 455 Score = 51.2 bits (121), Expect = 2e-06 Identities = 30/106 (28%), Positives = 50/106 (47%) Frame = -1 Query: 583 LVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 404 +VED + LT + + + G +++ R +PDLIL+D+ LP M G + Sbjct: 1 MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60 Query: 403 QLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 266 +K + P++ +TAH +A+ G D+ KP E RL Sbjct: 61 AVK--EKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRL 104
>PRR1_SCHPO (O14283) Transcription factor prr1 (Pombe response regulator 1)| Length = 539 Score = 51.2 bits (121), Expect = 2e-06 Identities = 43/122 (35%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLX-----VVLAHDGAAGVDTARREQPDLILMDMSLPV 428 +ILLVED+E LSRR+T K L V +A DG V+ A DLILMD LP Sbjct: 369 RILLVEDDE-----LSRRMTIKFLTSFDCQVDVAVDGIGAVNKANAGGFDLILMDFILPN 423 Query: 427 MDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 248 +DG T ++ TP++A+T++ +D G D KP LL + + Sbjct: 424 LDGLSVTCLIRQYD--HNTPILAITSNISMNDAVTYFNHGVTDLLVKPFTKLTLLQLLKK 481 Query: 247 LL 242 L Sbjct: 482 QL 483
>RPFC_XANC8 (P0C0F7) Sensory/regulatory protein rpfC (EC 2.7.13.3)| Length = 677 Score = 50.8 bits (120), Expect = 3e-06 Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 ++L+ +D+E N +L R L + G V+ + +D E D +++D+ +P M+G + Sbjct: 414 RMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLD 473 Query: 412 ATRQLKADPE--LQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 245 +QL+ ++ TPV+ L+A AG + KP+ +LL +A L Sbjct: 474 MLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVLAAKLLDTLADL 531
>CSSR_BACSU (O32192) Transcriptional regulatory protein cssR| Length = 225 Score = 50.8 bits (120), Expect = 3e-06 Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 4/121 (3%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQ---PDLILMDMSLPVMDG 419 I LVED ++ ++L++ L +G + G + AR++ P L ++D+ LP DG Sbjct: 5 IYLVEDEDNLNELLTKYLENEGWNITSFTKG----EDARKKMTPSPHLWILDIMLPDTDG 60 Query: 418 WEATRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 242 + +++KA DP++ PVI ++A DR + G +DY +KP L+ ++ +LL Sbjct: 61 YTLIKEIKAKDPDV---PVIFISARDADIDRVLGLELGSNDYISKPFLPRELIIRVQKLL 117 Query: 241 E 239 + Sbjct: 118 Q 118
>VRAR_STAS1 (Q49YS9) Response regulator protein vraR| Length = 209 Score = 50.8 bits (120), Expect = 3e-06 Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 2/104 (1%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRL-TRKGLXVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 K+L V+D+E +S L T+ + VV G ++ A +PDLILMD+ + MDG Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQSDIDVVGEGKSGKDAIEKAHELKPDLILMDLLMDDMDG 63 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 287 EAT Q+K D L V+ LT++ ++ +A+ +G D Y K Sbjct: 64 VEATEQVKKD--LPNIKVVMLTSYIEDNEVYRALDSGVDSYILK 105
>SP0A_CLOAB (P58253) Stage 0 sporulation protein A homolog| Length = 281 Score = 50.8 bits (120), Expect = 3e-06 Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 2/117 (1%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVV--LAHDGAAGVDTARREQPDLILMDMSLPVMDGW 416 +L+ +DN++ ++L+ L + +V +A DG + ++PDL+++D+ +P +DG Sbjct: 8 VLIADDNKEFCNILNDYLLNQSDMIVVGIAKDGVEALKLIENKKPDLVVLDIIMPRLDGL 67 Query: 415 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 245 +L +I L+A ++AI G D Y KP ++ ++I ++ Sbjct: 68 GVLEKLNNKDAENLPRIIVLSAVGQDKITQRAITLGADYYVVKPFDMDVFTNRIREM 124
>RSTA_ECOLI (P52108) Transcriptional regulatory protein rstA| Length = 242 Score = 50.4 bits (119), Expect = 4e-06 Identities = 33/115 (28%), Positives = 55/115 (47%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 M I+ VED+ + +++ L + + V + G +T RE PDL+L+D+ LP DG Sbjct: 4 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 63 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 254 R L+A P++ LT+ + A+ G DY K LL+++ Sbjct: 64 MTICRDLRAK---WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARL 115
>SP0A_BACSU (P06534) Stage 0 sporulation protein A| Length = 267 Score = 50.4 bits (119), Expect = 4e-06 Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLT-RKGLXVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 K+ + +DN + +LS + ++ + V+ +A++G + + + PD++++D+ +P +DG Sbjct: 5 KVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDG 64 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 245 +L+ +Q VI LTA +KA+ G + KP ++ L+ I Q+ Sbjct: 65 LAVLERLRESDLKKQPNVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQV 122
>VRAR_STAHJ (Q4L7J5) Response regulator protein vraR| Length = 209 Score = 50.4 bits (119), Expect = 4e-06 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 3/105 (2%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 422 K+L V+D+E +S L+ + + + +G +G D A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEIVGEGESGKDAIAKAHELKPDLILMDLLMDDMD 62 Query: 421 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 287 G EAT Q+K D L V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPHIKVVMLTSFIEDKEVYRALDAGVDSYILK 105
>CHEB_RHILO (Q98PD1) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 339 Score = 50.4 bits (119), Expect = 4e-06 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 2/70 (2%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVV--LAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 +I +V D ++L R + G V +A +G V+ RR+ PDLILMD+++PVMDG Sbjct: 2 RIGVVNDMPMAVELLRRLVLSTGEHQVAWIATNGREAVEVCRRDLPDLILMDLAMPVMDG 61 Query: 418 WEATRQLKAD 389 EATR++ A+ Sbjct: 62 VEATRRIMAE 71
>NTRC_SALTY (P41789) Nitrogen regulation protein NR(I)| Length = 469 Score = 50.4 bits (119), Expect = 4e-06 Identities = 31/121 (25%), Positives = 56/121 (46%) Frame = -1 Query: 577 EDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL 398 +D+ W +L R L GL +G + + PD++L D+ +P MDG +Q+ Sbjct: 11 DDSSIRW-VLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQI 69 Query: 397 KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 218 K + PVI +TAH+ A G DY KP ++ ++ + + + +++ Sbjct: 70 KQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 Query: 217 P 215 P Sbjct: 128 P 128
>CHEY_CAMJE (P71129) Chemotaxis protein cheY homolog| Length = 130 Score = 50.4 bits (119), Expect = 4e-06 Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVL-AHDGAAGVDT-ARREQPDLILMDMSLPVMDG 419 K+L+V+D+ ++ LTR G VL A G D + E +++ D ++P M+G Sbjct: 2 KLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKNEDVKVLITDWNMPEMNG 61 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 242 E ++++A+ + + P+I +T ++ A+ AG ++Y KP L K+ +L Sbjct: 62 LELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEDVL 120
>CHEB_SYMTH (Q67P67) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 362 Score = 50.1 bits (118), Expect = 5e-06 Identities = 31/107 (28%), Positives = 59/107 (55%), Gaps = 4/107 (3%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDG 419 ++L+V+D+ +L+ L L V+ A DG G++ + QPD++ +D+ +P +DG Sbjct: 10 RVLVVDDSAFMRKVLTELLESDPLITVVGTARDGQDGLEKVLQLQPDVVTLDIEMPRLDG 69 Query: 418 WEATRQLKADPELQQTPVIALTAHAM--ASDREKAIAAGCDDYDTKP 284 + R++ A + TPV+ +++H A +A+A G D+ KP Sbjct: 70 YGTLREIMA---RRPTPVVMVSSHTREGAEATIRALALGAVDFVAKP 113
>LIAR_BACSU (O32197) Sensory transduction protein liaR| Length = 211 Score = 50.1 bits (118), Expect = 5e-06 Identities = 50/157 (31%), Positives = 70/157 (44%), Gaps = 26/157 (16%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVL-----------AHDGAAGVDTARREQPDLI 452 M ++LL++D+E + R GL L A DG+ GV A PD+I Sbjct: 1 MIRVLLIDDHE---------MVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVI 51 Query: 451 LMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDY---DTKPI 281 LMD+ + MDG EAT+Q+ EL +I LT+ I AG Y +K Sbjct: 52 LMDLVMEGMDGIEATKQICR--ELSDPKIIVLTSFIDDDKVYPVIEAGALSYLLKTSKAA 109 Query: 280 EL-----------PRLLSKIA-QLLER*SHRREPWLP 206 E+ P+L SK+A ++L R H E LP Sbjct: 110 EIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALP 146
>CHEY_TREPA (P96126) Chemotaxis protein cheY| Length = 144 Score = 49.7 bits (117), Expect = 7e-06 Identities = 36/122 (29%), Positives = 66/122 (54%), Gaps = 4/122 (3%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVV-LAHDGAAGVDTARREQP--DLILMDMSLPVMD 422 ++L+V+D+ + + LT +G V A DG GV+ + P DL+ MD+++P MD Sbjct: 26 RVLVVDDSMFVSKQIGQILTSEGYEVADTAVDGVDGVEKYKAMSPGVDLVTMDITMPKMD 85 Query: 421 GWEATRQ-LKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 245 G A + L+ D + V+ ++A +KA+ G +Y KP++ ++L +IA + Sbjct: 86 GITALEKILEFD---KNAKVVIISALGKEELVKKALLLGAKNYIVKPLDRKKVLERIASV 142 Query: 244 LE 239 L+ Sbjct: 143 LK 144
>SP0A_BACME (P52932) Stage 0 sporulation protein A (Fragment)| Length = 212 Score = 49.7 bits (117), Expect = 7e-06 Identities = 31/118 (26%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLT-RKGLXVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 K+ LV+DN + +L ++ ++ + V+ +A++G + + + PD++++D+ +P +DG Sbjct: 5 KVCLVDDNRELIGLLEDYISEQEDMEVIGVAYNGQECLSILKDKNPDVLVLDIIMPHLDG 64 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 245 QLK + VI LTA +KA+ G + KP ++ L++ I Q+ Sbjct: 65 LAVLGQLKEMKKENYPNVIMLTAFGQEDVTKKAVDLGAAYFILKPFDMENLVNHIRQV 122
>CCDB_BACSU (P45709) Protein ccdB| Length = 120 Score = 49.3 bits (116), Expect = 9e-06 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVV-LAHDGAAGVDTARREQPDLILMDMSLPVMD 422 MT++L+V+D + + L + A DG D ++ +PDL+ MD+++PV + Sbjct: 1 MTRVLVVDDAKFMRVKIREILEEANYIIAGEAADGEQAADLYKKLRPDLVTMDITMPVKN 60 Query: 421 GWEATRQ-LKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 245 G +A R L DP+ + VI TA +AI G D+ KP E ++L ++++ Sbjct: 61 GIKALRDILTFDPKAK---VIMCTAMRQQRIVTEAIELGAKDFIVKPFEETKVLEAVSRV 117 Query: 244 L 242 + Sbjct: 118 M 118
>VANR_ENTFC (Q06239) Regulatory protein vanR| Length = 231 Score = 48.9 bits (115), Expect = 1e-05 Identities = 29/119 (24%), Positives = 55/119 (46%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KIL+V+D + D++ L + V + ++ + + DL ++D+ LP G Sbjct: 4 KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLT 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 ++++ + P+I LT D+ + G DDY TKP L++++ L R Sbjct: 64 ICQKIR---DKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119
>CHEY_YEREN (Q93P00) Chemotaxis protein cheY| Length = 128 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/91 (29%), Positives = 44/91 (48%) Frame = -1 Query: 508 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDR 329 A DG ++ R D ++ D ++P MDG + + ++AD L PV+ +TA A + Sbjct: 35 AEDGVDALNKLRTGGFDFVVSDWNMPNMDGLDLLKTIRADGALGTLPVLMVTAEAKKENI 94 Query: 328 EKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 A AG Y KP L K+ ++ E+ Sbjct: 95 IAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_THEMA (Q56312) Chemotaxis protein cheY| Length = 120 Score = 48.9 bits (115), Expect = 1e-05 Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 2/115 (1%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGW 416 ++L+V+D ML +T+ G V A +G V+ + +PD++ MD+++P M+G Sbjct: 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGI 63 Query: 415 EATRQ-LKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 254 +A ++ +K DP + A+ AM + AI AG D+ KP + R++ + Sbjct: 64 DAIKEIMKIDPNAKIIVCSAMGQQAMVIE---AIKAGAKDFIVKPFQPSRVVEAL 115
>DCTR_BACSU (P96602) Probable C4-dicarboxylate response regulator dctR| Length = 226 Score = 48.9 bits (115), Expect = 1e-05 Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 8/117 (6%) Frame = -1 Query: 592 KILLVEDN----EDNWDMLSRRLTRKGLXV-VLAHDGAAGVDTARREQPDLILMDMSLPV 428 K+LL+ED+ E N D ++ T KG+ V A +G G+ + EQPDL+++D+ +P Sbjct: 7 KVLLIEDDPMVQEVNKDFIT---TVKGVTVCATAGNGEEGMKLIKEEQPDLVILDVYMPK 63 Query: 427 MDGWEATRQLKADPELQQTPVIALTAHAMASDREK---AIAAGCDDYDTKPIELPRL 266 DG + ++++ + + VI ++A A D+E + G DY KP +L R+ Sbjct: 64 KDGIKTLQEIR--KQKLEVDVIVVSA---AKDKETISLMLQNGAVDYILKPFKLERM 115
>TRPO_PSEAE (P24908) Putative transcriptional regulator| Length = 207 Score = 48.9 bits (115), Expect = 1e-05 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 1/113 (0%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVV-LAHDGAAGVDTARREQPDLILMDMSLPVMD 422 M+K+L+V+D+ + R G +V A +GA + AR++ PDL ++D+ +P +D Sbjct: 1 MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKID 60 Query: 421 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLL 263 G E +LK+ T V+ LT A + + AG + +K L LL Sbjct: 61 GLEVIARLKS--LKLDTKVLVLTRQNPAQFAPRCLQAGAMGFVSKRENLSELL 111
>MAK2_SCHPO (O14002) Peroxide stress-activated histidine kinase mak2 (EC| 2.7.13.3) (Mcs4-associated kinase 2) (His-Asp phosphorelay kinase phk1) Length = 2310 Score = 48.9 bits (115), Expect = 1e-05 Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 9/126 (7%) Frame = -1 Query: 586 LLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQ---PDLILMDMSLPVMDGW 416 L+ EDN +L+++L+ G V A DG V +Q +I D +P+ DG Sbjct: 2182 LIAEDNLIARKLLTKQLSNLGFQVHAAVDGVELVKMYEAKQFGFYSVIFADYHMPIRDGA 2241 Query: 415 EATRQLKADPELQQT----PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 248 EA ++A PVIALTA S +++ + G + Y TKP +L++ + + Sbjct: 2242 EAVMDIRAYERENNCSTPIPVIALTADIQKSAKQRCLEVGMNFYLTKPFTQKQLVNAVRE 2301 Query: 247 --LLER 236 LLE+ Sbjct: 2302 FVLLEK 2307
>GACA_PSEU2 (Q52376) Response regulator gacA (Global activator)| Length = 214 Score = 48.9 bits (115), Expect = 1e-05 Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 7/122 (5%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRK-----GLXVV-LAHDGAAGVDTARREQPDLILMDMS 437 M K+L+V+D+ D++ +TR GL VV A G + AR +PD++LMD+ Sbjct: 1 MIKVLVVDDH----DLVRTGITRMLADIDGLQVVGQADSGEESLKKARELKPDVVLMDVK 56 Query: 436 LPVMDGWEATRQ-LKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLS 260 +P + G EATR+ L++ P+++ V+A+T + + AG Y TK L ++ Sbjct: 57 MPGIGGLEATRKMLRSHPDIK---VVAVTVCEEDPFPTRLLQAGAAGYMTKGAGLAEMVQ 113 Query: 259 KI 254 I Sbjct: 114 AI 115
>CHEY_LISMO (P0A4H5) Chemotaxis protein cheY| Length = 119 Score = 48.5 bits (114), Expect = 2e-05 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 2/117 (1%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVL-AHDGAAGVDTARREQPDLILMDMSLPVMD 422 M K+L+V+D M+ + VV A +G V +PD++ +D+++P MD Sbjct: 1 MLKLLIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYDEVKPDIVTLDITMPEMD 60 Query: 421 GWEATRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 254 G EA Q+ A DP + A+ M D AI G D+ KP + R+L + Sbjct: 61 GLEALAQIMAKDPSAKVIMCSAMGQQGMVVD---AIKKGAKDFIVKPFQADRVLEAL 114
>CHEY_LISIN (P0A4H6) Chemotaxis protein cheY| Length = 119 Score = 48.5 bits (114), Expect = 2e-05 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 2/117 (1%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVL-AHDGAAGVDTARREQPDLILMDMSLPVMD 422 M K+L+V+D M+ + VV A +G V +PD++ +D+++P MD Sbjct: 1 MLKLLIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYDEVKPDIVTLDITMPEMD 60 Query: 421 GWEATRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 254 G EA Q+ A DP + A+ M D AI G D+ KP + R+L + Sbjct: 61 GLEALAQIMAKDPSAKVIMCSAMGQQGMVVD---AIKKGAKDFIVKPFQADRVLEAL 114
>CHEB_DESPS (Q6AJV3) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 364 Score = 48.5 bits (114), Expect = 2e-05 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTR-KGLXVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 419 ++L+V+D ++S L G+ V+ +AH+G +D R +PDLI +D+ +PVM+G Sbjct: 5 RVLVVDDTILYRKIVSDLLREIPGIEVIGVAHNGKIALDKIRLSKPDLITLDIEMPVMNG 64 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIA 251 E LK P+ +++ + KA+ G D+ KP E +K A Sbjct: 65 IELLEHLKDIPDAPGAVMLSTLTSDGSRMTMKALELGAFDFILKPQEKTPAANKAA 120
>CHEY_SALTY (P0A2D5) Chemotaxis protein cheY| Length = 128 Score = 48.1 bits (113), Expect = 2e-05 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLX-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 416 K L+V+D ++ L G V A DG ++ + I+ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDGL 65 Query: 415 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_SALTI (P0A2D6) Chemotaxis protein cheY| Length = 128 Score = 48.1 bits (113), Expect = 2e-05 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLX-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 416 K L+V+D ++ L G V A DG ++ + I+ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDGL 65 Query: 415 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_ENTCL (Q9FAD7) Chemotaxis protein cheY| Length = 128 Score = 48.1 bits (113), Expect = 2e-05 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLX-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 416 K L+V+D ++ L G V A DG ++ + ++ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGL 65 Query: 415 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADAGMASMPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLGKIFEK 125
>SP0A_BACST (P52934) Stage 0 sporulation protein A| Length = 259 Score = 48.1 bits (113), Expect = 2e-05 Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDG 419 K+ + +DN + +L ++ + V+ A++G + ++PD++L+D+ +P +DG Sbjct: 4 KVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDG 63 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 245 +++A E Q VI LTA +KA+ G + KP ++ L I Q+ Sbjct: 64 LAVLERIRAGFE-HQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQV 120
>CHEB_VIBF1 (Q5E3S1) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 376 Score = 48.1 bits (113), Expect = 2e-05 Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 14/176 (7%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDG 419 K+L+V+D+ +S + V+ A +G V+ A+ +PD+I MD+ +PVMDG Sbjct: 4 KVLVVDDSSFFRRRVSEIINSDPRLEVIDVAVNGKEAVEKAKSLKPDVITMDIEMPVMDG 63 Query: 418 WEATRQ-LKADPELQQTPVIALTA--HAMASDREKAIAAGCDDYDTKPIE---------L 275 A R+ +KA P TP + ++ H A A+ AG D+ K E + Sbjct: 64 ISAVREIMKACP----TPTLMFSSLTHDGAKATLDALDAGALDFLPKKFEDIARNRDEAV 119 Query: 274 PRLLSKIAQLLER*SHRREPWLPP*PSTAMKLRRQFLLFGVGTTFTAIAAISLSDV 107 L +IA++ + S R P L ++ ++ R TT TA +A++ S V Sbjct: 120 SLLQKRIAEIARKKSFMRRPVLSSQSTSTVESR-------TATTRTATSALTASPV 168
>RCP1_SYNY3 (Q55169) Response regulator rcp1| Length = 147 Score = 48.1 bits (113), Expect = 2e-05 Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 9/121 (7%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLX--VVLAHDGAAGVDTARRE-------QPDLILMDMS 437 ILLVED++ + ++ L + +++ DG A + +++ +P+LIL+D++ Sbjct: 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLN 70 Query: 436 LPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSK 257 LP DG E ++K +P+L++ PV+ LT D + + Y TK L L Sbjct: 71 LPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKM 130 Query: 256 I 254 + Sbjct: 131 V 131
>RPFG_XANC8 (Q4UU85) Response regulator rpfG| Length = 378 Score = 48.1 bits (113), Expect = 2e-05 Identities = 26/74 (35%), Positives = 41/74 (55%) Frame = -1 Query: 460 DLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPI 281 DL+L+D +P MDG E R+L+ P + P+I +T R+ A+ AG D+ KPI Sbjct: 75 DLLLLDYRMPGMDGLEFARRLRRLPSHRDIPIILITIVGDEPIRQAALEAGVIDFLVKPI 134 Query: 280 ELPRLLSKIAQLLE 239 L ++ + LL+ Sbjct: 135 RPRELRARCSNLLQ 148
>BASR_ECOLI (P30843) Transcriptional regulatory protein basR/pmrA| Length = 222 Score = 48.1 bits (113), Expect = 2e-05 Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 9/155 (5%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAA--GVDTARREQPDL-------ILMDM 440 KIL+VED+ L +GL + +G A V TAR + L +++D+ Sbjct: 2 KILIVEDDT---------LLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDL 52 Query: 439 SLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLS 260 LP DG +++ + PV+ LTA +D+ + G DDY KP L L + Sbjct: 53 GLPDEDGLHFLARIRQ--KKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHA 110 Query: 259 KIAQLLER*SHRREPWLPP*PSTAMKLRRQFLLFG 155 +I LL R +++ E L T RRQ + G Sbjct: 111 RIRALLRRHNNQGESELIVGNLTLNMGRRQVWMGG 145
>GACA_PSEVI (P95582) Response regulator gacA (Global activator)| Length = 214 Score = 47.8 bits (112), Expect = 3e-05 Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 7/122 (5%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRK-----GLXVV-LAHDGAAGVDTARREQPDLILMDMS 437 M ++L+V+D+ D++ +TR GL VV A G + AR +PD++LMD+ Sbjct: 1 MIRVLVVDDH----DLVRTGITRMLADIDGLQVVGQADSGEESLKKARELKPDVVLMDVK 56 Query: 436 LPVMDGWEATRQ-LKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLS 260 +P + G EATR+ L++ P+++ V+A+T + + AG Y TK L ++ Sbjct: 57 MPGIGGLEATRKLLRSHPDIK---VVAVTVCEEDPFPTRLLQAGAAGYMTKGAGLAEMVQ 113 Query: 259 KI 254 I Sbjct: 114 AI 115
>GACA_PSEAE (Q51373) Response regulator gacA (Global activator)| Length = 214 Score = 47.8 bits (112), Expect = 3e-05 Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 7/125 (5%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTR-----KGLXVVLAHD-GAAGVDTARREQPDLILMDMS 437 M K+L+V+D+ D++ +TR +GL VV D G + AR +PD++LMD+ Sbjct: 1 MIKVLVVDDH----DLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVK 56 Query: 436 LPVMDGWEATRQ-LKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLS 260 +P + G EATR+ L++ P+++ V+ +T + + AG Y TK L ++ Sbjct: 57 MPGIGGLEATRKLLRSQPDIK---VVVVTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQ 113 Query: 259 KIAQL 245 I Q+ Sbjct: 114 AIRQV 118
>ARCA_HAEIN (P44918) Aerobic respiration control protein arcA homolog| Length = 236 Score = 47.8 bits (112), Expect = 3e-05 Identities = 36/119 (30%), Positives = 53/119 (44%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KIL+VED + L +G V A +G +L++MD++LP +G Sbjct: 5 KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLL 64 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 R+L+ + L P+I LT D+ + G DDY TKP L + LL R Sbjct: 65 LARELREELSL---PLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHR 120
>CHEY_YERPE (Q8D0P1) Chemotaxis protein cheY| Length = 128 Score = 47.8 bits (112), Expect = 3e-05 Identities = 26/91 (28%), Positives = 43/91 (47%) Frame = -1 Query: 508 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDR 329 A DG ++ R D ++ D ++P MDG + + ++ D L PV+ +TA A + Sbjct: 35 AEDGVDALNKLRAGGFDFVVSDWNMPNMDGLDLLKTIRTDGALATLPVLMVTAEAKKENI 94 Query: 328 EKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 A AG Y KP L K+ ++ E+ Sbjct: 95 IAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_SHIFL (P0AE69) Chemotaxis protein cheY| Length = 128 Score = 47.8 bits (112), Expect = 3e-05 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLX-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 416 K L+V+D ++ L G V A DG ++ + ++ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGL 65 Query: 415 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_ECOLI (P0AE67) Chemotaxis protein cheY| Length = 128 Score = 47.8 bits (112), Expect = 3e-05 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLX-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 416 K L+V+D ++ L G V A DG ++ + ++ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGL 65 Query: 415 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_ECO57 (P0AE68) Chemotaxis protein cheY| Length = 128 Score = 47.8 bits (112), Expect = 3e-05 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLX-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 416 K L+V+D ++ L G V A DG ++ + ++ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGL 65 Query: 415 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_ECOL6 (Q8FGP6) Chemotaxis protein cheY| Length = 128 Score = 47.4 bits (111), Expect = 3e-05 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLX-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 416 K L+V+D ++ L G V A DG ++ + ++ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGLDALNKLQAGGYGFVISDWNMPNMDGL 65 Query: 415 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEB1_DESDG (Q311M8) Chemotaxis response regulator protein-glutamate| methylesterase 1 (EC 3.1.1.61) Length = 369 Score = 47.0 bits (110), Expect = 4e-05 Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 7/146 (4%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRK-GLXVVL-AHDGAAGVDTARREQPDLILMDMSLPVM 425 M K+++V+D+ LS L + G+ VV A +G G++ R+ PD++ +D+ +P M Sbjct: 1 MIKVVVVDDSAFMRKALSSMLEKDPGISVVATARNGEEGLEQIRKHDPDVVTLDIEMPRM 60 Query: 424 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDY-----DTKPIELPRLLS 260 DG A R + + V +LT A KA+ G D+ T +++ ++ Sbjct: 61 DGLTALRHIMMEMPRPVLMVSSLTVEG-AEATLKAMELGAVDFIPKQLSTVSLDIVKIEK 119 Query: 259 KIAQLLER*SHRREPWLPP*PSTAMK 182 + + ++ S RR P P+ A++ Sbjct: 120 DLQEKVKAISRRRVPGRSFRPAPAVR 145
>YDFI_BACSU (P96686) Sensory transduction protein ydfI| Length = 213 Score = 47.0 bits (110), Expect = 4e-05 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 11/95 (11%) Frame = -1 Query: 598 MTKILLVEDNEDNWDMLSRRLTRKGLXVVL-----------AHDGAAGVDTARREQPDLI 452 M K+L+V+D+ + R+GL +++ A +G V A +PD+I Sbjct: 1 MNKVLIVDDH---------LVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDII 51 Query: 451 LMDMSLPVMDGWEATRQLKADPELQQTPVIALTAH 347 LMD+ +P M G EA +Q+K E TP+I LT + Sbjct: 52 LMDLYMPEMSGLEAIKQIK---EKHDTPIIILTTY 83
>CHEB3_PSESM (Q886S8) Chemotaxis response regulator protein-glutamate| methylesterase of group 3 operon (EC 3.1.1.61) Length = 336 Score = 47.0 bits (110), Expect = 4e-05 Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 7/126 (5%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDG 419 KI +V D + L R L + V+ A +GA V + + PDLILMD+ +PVMDG Sbjct: 2 KIAIVNDMPMAIEALRRALAFEPAHQVIWVAANGADAVQRSIEQTPDLILMDLIMPVMDG 61 Query: 418 WEATRQLKADPELQQTP--VIALTAHAMASDREKAIAAG---CDDYDTKPIELPRLLSKI 254 EATR++ A +TP ++ +T + R A G D DT I P Sbjct: 62 VEATRRIMA-----ETPCAIVIVTVDREQNMRRVFEAMGHGALDVVDTPAIGGPNPREAA 116 Query: 253 AQLLER 236 A LL + Sbjct: 117 APLLRK 122
>CHEB1_VIBVY (Q7MIQ5) Chemotaxis response regulator protein-glutamate| methylesterase of group 1 operon (EC 3.1.1.61) Length = 376 Score = 46.6 bits (109), Expect = 6e-05 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 4/109 (3%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDG 419 K+L+V+D+ +S + + V+ A +G V+ A+R +PD+I MD+ +PVMDG Sbjct: 4 KVLVVDDSSFFRRRVSEIINAESRLEVIDVAVNGKEAVEKAKRLKPDVITMDIEMPVMDG 63 Query: 418 WEATRQLKADPELQQTPVIALTA--HAMASDREKAIAAGCDDYDTKPIE 278 A R++ A TP++ ++ H A A+ AG D+ K E Sbjct: 64 ISAVREIMAS---VPTPILMFSSLTHDGAKATLDALDAGALDFLPKKFE 109
>CHEB1_VIBVU (Q8DB67) Chemotaxis response regulator protein-glutamate| methylesterase of group 1 operon (EC 3.1.1.61) Length = 376 Score = 46.6 bits (109), Expect = 6e-05 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 4/109 (3%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDG 419 K+L+V+D+ +S + + V+ A +G V+ A+R +PD+I MD+ +PVMDG Sbjct: 4 KVLVVDDSSFFRRRVSEIINAESRLEVIDVAVNGKEAVEKAKRLKPDVITMDIEMPVMDG 63 Query: 418 WEATRQLKADPELQQTPVIALTA--HAMASDREKAIAAGCDDYDTKPIE 278 A R++ A TP++ ++ H A A+ AG D+ K E Sbjct: 64 ISAVREIMAS---VPTPILMFSSLTHDGAKATLDALDAGALDFLPKKFE 109
>CHEB3_PSE14 (Q48F23) Chemotaxis response regulator protein-glutamate| methylesterase 3 (EC 3.1.1.61) Length = 336 Score = 46.6 bits (109), Expect = 6e-05 Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 7/126 (5%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDG 419 KI +V D + L R L + ++ A +GA V + PDLILMD+ +PVMDG Sbjct: 2 KIAIVNDMPMAIEALRRALAFEPAHQIIWVASNGADAVQRCVEQTPDLILMDLIMPVMDG 61 Query: 418 WEATRQLKADPELQQTP--VIALTAHAMASDREKAIAAG---CDDYDTKPIELPRLLSKI 254 EATR++ A +TP ++ +T + R A G D DT I P Sbjct: 62 VEATRRIMA-----ETPCAIVIVTVDREQNMRRVFEAMGHGALDVVDTPAIGGPNPKEAA 116 Query: 253 AQLLER 236 A LL + Sbjct: 117 APLLRK 122
>CHEB2_PSEU2 (Q4ZWW3) Chemotaxis response regulator protein-glutamate| methylesterase 2 (EC 3.1.1.61) Length = 336 Score = 46.2 bits (108), Expect = 8e-05 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDG 419 KI +V D + L R L + ++ A +GA V + PDLILMD+ +PVMDG Sbjct: 2 KIAIVNDMPMAIEALRRALAFEPAHQIIWVASNGADAVQRCVEQTPDLILMDLIMPVMDG 61 Query: 418 WEATRQLKAD 389 EATR++ A+ Sbjct: 62 VEATRRIMAE 71
>CHEY_HELPJ (Q9ZM64) Chemotaxis protein cheY homolog| Length = 124 Score = 46.2 bits (108), Expect = 8e-05 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 2/119 (1%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLA--HDGAAGVDTARREQPDLILMDMSLPVMDG 419 K+L+V+D+ ++ L+R G VL H A +++ D ++P M+G Sbjct: 2 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 61 Query: 418 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 242 + ++++AD ++ P+I +T ++ A+ AG ++Y KP L K+ +L Sbjct: 62 LDLVKKVRADNRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 120
>CHEB1_PSEAE (O87125) Chemotaxis response regulator protein-glutamate| methylesterase of group 1 operon (EC 3.1.1.61) Length = 368 Score = 45.8 bits (107), Expect = 1e-04 Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 11/144 (7%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAH--DGAAGVDTARREQPDLILMDMSLPVMDG 419 K+L+V+D+ +S L+ G V+ +G ++ A +PD+I MD +P+MDG Sbjct: 4 KVLVVDDSGFFRRRVSEILSADGQIQVVGTGTNGREAIEQALALRPDVITMDYEMPLMDG 63 Query: 418 WEATRQLKADPELQQTPVIALTA--HAMASDREKAIAAGCDDYDTKPIE-LPRLLSKIAQ 248 A R + + TPV+ ++ H A A+ AG DY K E + R K+ Q Sbjct: 64 ITAVRNIM---QRCPTPVLMFSSLTHEGARVTLDALDAGAVDYLPKNFEDISRNPDKVRQ 120 Query: 247 LL------ER*SHRREPWLPP*PS 194 LL S+RR LPP PS Sbjct: 121 LLCEKVLTIARSNRRSISLPPLPS 144
>CHEB2_RHOCE (P72253) Chemotaxis response regulator protein-glutamate| methylesterase of group 2 operon (EC 3.1.1.61) Length = 394 Score = 45.8 bits (107), Expect = 1e-04 Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 3/106 (2%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAH--DGAAGVDTARREQPDLILMDMSLPVMDG 419 ++++V+D+ +++R L V+A +G ++T R+ D+I++D+ +PV+DG Sbjct: 21 RVMVVDDSAVIRGLITRALESDPEIKVVASVANGQMAINTLSRQPIDVIVLDIEMPVLDG 80 Query: 418 WEA-TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKP 284 A L+ADP ++ LTA A +A+ AG DY KP Sbjct: 81 LSALPHLLQADPNVKIVMASTLTAKG-ADISLRALRAGAADYIPKP 125
>SP0F_BACTK (P52942) Sporulation initiation phosphotransferase F (EC 2.7.-.-)| (Stage 0 sporulation protein F) Length = 122 Score = 45.8 bits (107), Expect = 1e-04 Identities = 29/109 (26%), Positives = 53/109 (48%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 413 KIL+V+D +L ++G A +G +D +++ PDL+++DM +P MDG E Sbjct: 4 KILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPDLVVLDMKIPGMDGIE 63 Query: 412 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 266 + K E VI ++A+ ++A G + KP ++ + Sbjct: 64 IFKACKEIDE--SIKVILMSAYGELDMIQEAKDLGALMHFAKPFDIDEI 110
>CHEB3_PSEPK (Q88MS5) Chemotaxis response regulator protein-glutamate| methylesterase of group 3 operon (EC 3.1.1.61) Length = 337 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/43 (51%), Positives = 30/43 (69%) Frame = -1 Query: 517 VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKAD 389 V +A +GA V + PDLILMD+ +PVMDG EATR++ A+ Sbjct: 29 VWVASNGAEAVQRCTEQLPDLILMDLIMPVMDGVEATRRIMAE 71
>RSSB_SERMA (Q8GP20) Swarming motility regulation protein rssB| Length = 219 Score = 45.8 bits (107), Expect = 1e-04 Identities = 35/118 (29%), Positives = 54/118 (45%) Frame = -1 Query: 589 ILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 410 ILLVED+ L R L G + A + DL+L+D++LP DG + Sbjct: 3 ILLVEDDLQLGKALCRALELAGFNLCWVRLIADAENKLSSGGFDLMLLDLTLPDGDGLQK 62 Query: 409 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 236 +A Q P+I LTA ++ +G +D+ KP LP L+S++ + R Sbjct: 63 LIAWRAAG--QNIPIIILTARDRIESLVNSLDSGANDFLAKPFALPELISRVKAVNRR 118
>CHEV_BACSU (P37599) Chemotaxis protein cheV| Length = 303 Score = 45.4 bits (106), Expect = 1e-04 Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 10/123 (8%) Frame = -1 Query: 592 KILLVEDNEDNWDMLSRRLTRKGLXVVLAHDGA----------AGVDTARREQPDLILMD 443 K+++VED+ +L L G + + + A +T +Q D+I+ D Sbjct: 176 KLIIVEDSPLLMRLLQDELKEAGYNNIASFENGKEAYEYIMNLAENETDLSKQIDMIITD 235 Query: 442 MSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLL 263 + +P MDG T+ LK +P+ PV+ ++ R + G D+ +KP E+ L+ Sbjct: 236 IEMPKMDGHRLTKLLKENPKSSDVPVMIFSSLITDDLRHRGEVVGADEQISKP-EISDLI 294 Query: 262 SKI 254 K+ Sbjct: 295 KKV 297 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,182,341 Number of Sequences: 219361 Number of extensions: 1828146 Number of successful extensions: 7268 Number of sequences better than 10.0: 485 Number of HSP's better than 10.0 without gapping: 6745 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7100 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
