ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart14h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY157498.1| Synechococcus sp. PCC 7942 cosmid 4G8, complete s... 894 0.0
2dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 894 0.0
3gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 894 0.0
4dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 72 2e-09
5dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 66 1e-07
6gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 60 7e-06
7emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 46 0.099
8dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 46 0.099
9ref|NM_001035273.1| Bos taurus single stranded DNA binding prote... 44 0.39
10gb|BC107552.1| Bos taurus single stranded DNA binding protein 4,... 44 0.39
11ref|XM_756932.1| Ustilago maydis 521 hypothetical protein (UM058... 42 1.6
12emb|BX294141.1| Pirellula sp. strain 1 complete genome; segment ... 42 1.6
13gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, c... 40 6.1
14gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 6.1
15gb|AC147078.2| Pan troglodytes BAC clone RP43-180L22 from 7, com... 40 6.1
16ref|XM_842921.1| Leishmania major strain Friedlin hypothetical p... 40 6.1
17ref|XM_818329.1| Trypanosoma brucei TREU927 RAB-interacting prot... 40 6.1
18gb|AC034145.5| Homo sapiens BAC clone RP11-127A24 from 7, comple... 40 6.1
19gb|AE008835.1| Salmonella typhimurium LT2, section 139 of 220 of... 40 6.1
20emb|AL627276.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 6.1
21emb|CR450777.5| Zebrafish DNA sequence from clone DKEY-16C7 in l... 40 6.1
22dbj|AB196987.1| Thermotoga maritima gene for alpha-L-arabinofura... 40 6.1
23gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 6.1
24dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 6.1
25gb|AF171069.1|AF171069 Salmonella typhimurium BarA sensor kinase... 40 6.1
26gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 6.1
27gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 40 6.1
28gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 6.1
29gb|AE000512.1| Thermotoga maritima MSB8, complete genome 40 6.1 
>gb|AY157498.1| Synechococcus sp. PCC 7942 cosmid 4G8, complete sequence
          Length = 31404

 Score =  894 bits (451), Expect = 0.0
 Identities = 454/455 (99%)
 Strand = Plus / Minus

                                                                         
Query: 1     ctcactcagtcgggtattggtaatgacatccgataaggagatcgcagcgatcgctgtaaa 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21343 ctcactcagtcgggtattggtaatgacatccgataaggagatcgcagcgatcgctgtaaa 21284

                                                                         
Query: 61    ggttgtccccactccaaacaacaggaattggcggcgcagcttcatggcagtcgagggtta 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21283 ggttgtccccactccaaacaacaggaattggcggcgcagcttcatggcagtcgagggtta 21224

                                                                         
Query: 121   cgggggcaaccaaggctcgcgacggtggctctagcgttcgagcaactgagcaattttact 180
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21223 ggggggcaaccaaggctcgcgacggtggctctagcgttcgagcaactgagcaattttact 21164

                                                                         
Query: 181   gagcaggcgcggtagctcgattggcttggtgtcgtagtcgtcacagcccgcggcgatcgc 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21163 gagcaggcgcggtagctcgattggcttggtgtcgtagtcgtcacagcccgcggcgatcgc 21104

                                                                         
Query: 241   cttttcgcgatcgctagccatggcgtgggcagtcagtgcaatcaccggcgtctgttgcag 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21103 cttttcgcgatcgctagccatggcgtgggcagtcagtgcaatcaccggcgtctgttgcag 21044

                                                                         
Query: 301   ttcaggatcggctttgagttggcgcgtggcctcccagccatccatcactggcaagctcat 360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21043 ttcaggatcggctttgagttggcgcgtggcctcccagccatccatcactggcaagctcat 20984

                                                                         
Query: 361   atccatcaaaatcagatccggttgctcgcgccgtgccgtatccacaccggcagctccatc 420
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20983 atccatcaaaatcagatccggttgctcgcgccgtgccgtatccacaccggcagctccatc 20924

                                                
Query: 421   gtgagccaagaccacttcaaaacccttgcgagtca 455
             |||||||||||||||||||||||||||||||||||
Sbjct: 20923 gtgagccaagaccacttcaaaacccttgcgagtca 20889
to top
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score =  894 bits (451), Expect = 0.0
 Identities = 454/455 (99%)
 Strand = Plus / Minus

                                                                           
Query: 1       ctcactcagtcgggtattggtaatgacatccgataaggagatcgcagcgatcgctgtaaa 60
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425778 ctcactcagtcgggtattggtaatgacatccgataaggagatcgcagcgatcgctgtaaa 2425719

                                                                           
Query: 61      ggttgtccccactccaaacaacaggaattggcggcgcagcttcatggcagtcgagggtta 120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425718 ggttgtccccactccaaacaacaggaattggcggcgcagcttcatggcagtcgagggtta 2425659

                                                                           
Query: 121     cgggggcaaccaaggctcgcgacggtggctctagcgttcgagcaactgagcaattttact 180
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425658 ggggggcaaccaaggctcgcgacggtggctctagcgttcgagcaactgagcaattttact 2425599

                                                                           
Query: 181     gagcaggcgcggtagctcgattggcttggtgtcgtagtcgtcacagcccgcggcgatcgc 240
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425598 gagcaggcgcggtagctcgattggcttggtgtcgtagtcgtcacagcccgcggcgatcgc 2425539

                                                                           
Query: 241     cttttcgcgatcgctagccatggcgtgggcagtcagtgcaatcaccggcgtctgttgcag 300
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425538 cttttcgcgatcgctagccatggcgtgggcagtcagtgcaatcaccggcgtctgttgcag 2425479

                                                                           
Query: 301     ttcaggatcggctttgagttggcgcgtggcctcccagccatccatcactggcaagctcat 360
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425478 ttcaggatcggctttgagttggcgcgtggcctcccagccatccatcactggcaagctcat 2425419

                                                                           
Query: 361     atccatcaaaatcagatccggttgctcgcgccgtgccgtatccacaccggcagctccatc 420
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425418 atccatcaaaatcagatccggttgctcgcgccgtgccgtatccacaccggcagctccatc 2425359

                                                  
Query: 421     gtgagccaagaccacttcaaaacccttgcgagtca 455
               |||||||||||||||||||||||||||||||||||
Sbjct: 2425358 gtgagccaagaccacttcaaaacccttgcgagtca 2425324
to top
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score =  894 bits (451), Expect = 0.0
 Identities = 454/455 (99%)
 Strand = Plus / Plus

                                                                           
Query: 1       ctcactcagtcgggtattggtaatgacatccgataaggagatcgcagcgatcgctgtaaa 60
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891273 ctcactcagtcgggtattggtaatgacatccgataaggagatcgcagcgatcgctgtaaa 1891332

                                                                           
Query: 61      ggttgtccccactccaaacaacaggaattggcggcgcagcttcatggcagtcgagggtta 120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891333 ggttgtccccactccaaacaacaggaattggcggcgcagcttcatggcagtcgagggtta 1891392

                                                                           
Query: 121     cgggggcaaccaaggctcgcgacggtggctctagcgttcgagcaactgagcaattttact 180
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891393 ggggggcaaccaaggctcgcgacggtggctctagcgttcgagcaactgagcaattttact 1891452

                                                                           
Query: 181     gagcaggcgcggtagctcgattggcttggtgtcgtagtcgtcacagcccgcggcgatcgc 240
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891453 gagcaggcgcggtagctcgattggcttggtgtcgtagtcgtcacagcccgcggcgatcgc 1891512

                                                                           
Query: 241     cttttcgcgatcgctagccatggcgtgggcagtcagtgcaatcaccggcgtctgttgcag 300
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891513 cttttcgcgatcgctagccatggcgtgggcagtcagtgcaatcaccggcgtctgttgcag 1891572

                                                                           
Query: 301     ttcaggatcggctttgagttggcgcgtggcctcccagccatccatcactggcaagctcat 360
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891573 ttcaggatcggctttgagttggcgcgtggcctcccagccatccatcactggcaagctcat 1891632

                                                                           
Query: 361     atccatcaaaatcagatccggttgctcgcgccgtgccgtatccacaccggcagctccatc 420
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891633 atccatcaaaatcagatccggttgctcgcgccgtgccgtatccacaccggcagctccatc 1891692

                                                  
Query: 421     gtgagccaagaccacttcaaaacccttgcgagtca 455
               |||||||||||||||||||||||||||||||||||
Sbjct: 1891693 gtgagccaagaccacttcaaaacccttgcgagtca 1891727
to top
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                           
Query: 203     ggcttggtgtcgtagtcgtcacagcccgcggcgatcgccttttcgcgatcgctagccatg 262
               |||||||| |||||||||||||| || |||||||||||| |||| || || || ||||||
Sbjct: 1811452 ggcttggtatcgtagtcgtcacaaccggcggcgatcgccctttctcggtcactggccatg 1811393

                                   
Query: 263     gcgtgggcagtcagtgcaat 282
               || ||||| ||||| |||||
Sbjct: 1811392 gcatgggcggtcagggcaat 1811373
to top
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                           
Query: 194     agctcgattggcttggtgtcgtagtcgtcacagcccgcggcgatcgccttttcgcgatcg 253
               |||||||| |||||||| |||||| | || |||||||| || | |||||  ||||| |||
Sbjct: 1190846 agctcgatgggcttggtttcgtagccatcgcagcccgccgccagcgcctgctcgcggtcg 1190787

                                            
Query: 254     ctagccatggcgtgggcagtcagtgcaat 282
               || |||||||||||||| ||||| |||||
Sbjct: 1190786 ctggccatggcgtgggcggtcagggcaat 1190758
to top
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                           
Query: 321     ggcgcgtggcctcccagccatccatcactggcaagctcatatccatcaaaatcagatccg 380
               ||||||| |||||||| |||||||  || |||| ||||||||||||||  ||||||||||
Sbjct: 2811243 ggcgcgttgcctcccacccatccaggaccggcaggctcatatccatcaggatcagatccg 2811184

                 
Query: 381     gt 382
               ||
Sbjct: 2811183 gt 2811182
to top
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 332    tcccagccatccatcactggcaagctcatatccat 366
              |||||||| |||||||| |||| ||||||||||||
Sbjct: 367622 tcccagccgtccatcaccggcaggctcatatccat 367588
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 194     agctcgattggcttggtgtcgtagtcgtcacagcc 228
               |||||||| || || ||||||||||||||||||||
Sbjct: 2473955 agctcgatcggttttgtgtcgtagtcgtcacagcc 2473921



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                          
Query: 320     tggcgcgtggcctcccagccatccatcactggcaagctcatatccatcaaaatcagatc 378
               |||||||| |||||||| || || ||||| || | |||||| ||||||||||| |||||
Sbjct: 2473829 tggcgcgtcgcctcccaaccgtcgatcaccggtaggctcatgtccatcaaaatgagatc 2473771
to top
>ref|NM_001035273.1| Bos taurus single stranded DNA binding protein 4 (SSBP4), mRNA
          Length = 1714

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 319  ttggcgcgtggcctcccagccatcca 344
            |||||||| |||||||||||||||||
Sbjct: 1498 ttggcgcggggcctcccagccatcca 1473
to top
>gb|BC107552.1| Bos taurus single stranded DNA binding protein 4, mRNA (cDNA clone
            MGC:128808 IMAGE:7989741), complete cds
          Length = 1714

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 319  ttggcgcgtggcctcccagccatcca 344
            |||||||| |||||||||||||||||
Sbjct: 1498 ttggcgcggggcctcccagccatcca 1473
to top
>ref|XM_756932.1| Ustilago maydis 521 hypothetical protein (UM05878.1) partial mRNA
          Length = 1446

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 245  tcgcgatcgctagccatggcg 265
            |||||||||||||||||||||
Sbjct: 1135 tcgcgatcgctagccatggcg 1155
to top
>emb|BX294141.1| Pirellula sp. strain 1 complete genome; segment 9/24
          Length = 299350

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 230   gcggcgatcgccttttcgcgatcgc 254
             |||||||| ||||||||||||||||
Sbjct: 26602 gcggcgattgccttttcgcgatcgc 26578
to top
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence
          Length = 1130447

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    gtcgtcacagcccgcggcga 236
              ||||||||||||||||||||
Sbjct: 236356 gtcgtcacagcccgcggcga 236337
to top
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 230     gcggcgatcgccttttcgcgatcg 253
               ||||||||||||| ||||||||||
Sbjct: 3381177 gcggcgatcgcctcttcgcgatcg 3381200
to top
>gb|AC147078.2| Pan troglodytes BAC clone RP43-180L22 from 7, complete sequence
          Length = 217576

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 58     aaaggttgtccccactccaaacaa 81
              |||| |||||||||||||||||||
Sbjct: 115707 aaagattgtccccactccaaacaa 115730
to top
>ref|XM_842921.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0316)
            partial mRNA
          Length = 2967

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 217  gtcgtcacagcccgcggcga 236
            ||||||||||||||||||||
Sbjct: 1211 gtcgtcacagcccgcggcga 1192
to top
>ref|XM_818329.1| Trypanosoma brucei TREU927 RAB-interacting protein (Tb10.389.1570)
           partial mRNA
          Length = 684

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 68  cccactccaaacaacaggaa 87
           ||||||||||||||||||||
Sbjct: 504 cccactccaaacaacaggaa 485
to top
>gb|AC034145.5| Homo sapiens BAC clone RP11-127A24 from 7, complete sequence
          Length = 162658

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 58     aaaggttgtccccactccaaacaa 81
              |||| |||||||||||||||||||
Sbjct: 144752 aaagattgtccccactccaaacaa 144775
to top
>gb|AE008835.1| Salmonella typhimurium LT2, section 139 of 220 of the complete genome
          Length = 21791

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   atatccatcaaaatcagatc 378
             ||||||||||||||||||||
Sbjct: 13277 atatccatcaaaatcagatc 13258
to top
>emb|AL627276.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 12/20
          Length = 274050

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 359    atatccatcaaaatcagatc 378
              ||||||||||||||||||||
Sbjct: 262213 atatccatcaaaatcagatc 262194
to top
>emb|CR450777.5| Zebrafish DNA sequence from clone DKEY-16C7 in linkage group 8,
             complete sequence
          Length = 97291

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   tggcctcccagccatccatc 346
             ||||||||||||||||||||
Sbjct: 21522 tggcctcccagccatccatc 21541
to top
>dbj|AB196987.1| Thermotoga maritima gene for alpha-L-arabinofuranosidase, partial
           cds
          Length = 1452

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 217 gtcgtcacagcccgcggcgatcgc 240
           ||||||||||||| ||||||||||
Sbjct: 642 gtcgtcacagcccacggcgatcgc 619
to top
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 359     atatccatcaaaatcagatc 378
               ||||||||||||||||||||
Sbjct: 2927676 atatccatcaaaatcagatc 2927657
to top
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                       
Query: 215     tagtcgtcacagcccgcggcgatcgccttttcgcgatcgc 254
               |||||||||||||| |||  ||  ||||||||||||||||
Sbjct: 1796431 tagtcgtcacagccggcgaggagagccttttcgcgatcgc 1796392
to top
>gb|AF171069.1|AF171069 Salmonella typhimurium BarA sensor kinase (barA) gene, complete cds
          Length = 2961

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 359  atatccatcaaaatcagatc 378
            ||||||||||||||||||||
Sbjct: 2261 atatccatcaaaatcagatc 2242
to top
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 359     atatccatcaaaatcagatc 378
               ||||||||||||||||||||
Sbjct: 2950108 atatccatcaaaatcagatc 2950089
to top
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 359     atatccatcaaaatcagatc 378
               ||||||||||||||||||||
Sbjct: 3068381 atatccatcaaaatcagatc 3068362
to top
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 326     gtggcctcccagccatccatcactggca 353
               ||||||| |||||| |||||||||||||
Sbjct: 1704590 gtggcctgccagccgtccatcactggca 1704563
to top
>gb|AE000512.1| Thermotoga maritima MSB8, complete genome
          Length = 1860725

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 217    gtcgtcacagcccgcggcgatcgc 240
              ||||||||||||| ||||||||||
Sbjct: 297259 gtcgtcacagcccacggcgatcgc 297236


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,811,561
Number of Sequences: 3902068
Number of extensions: 2811561
Number of successful extensions: 45149
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44511
Number of HSP's gapped (non-prelim): 638
length of query: 455
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 433
effective length of database: 17,147,199,772
effective search space: 7424737501276
effective search space used: 7424737501276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top