ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart14g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BARA_ECOLI (P0AEC5) Signal transduction histidine-protein kinase... 77 5e-14
2BARA_ECOL6 (P0AEC6) Signal transduction histidine-protein kinase... 77 5e-14
3BARA_ECO57 (P0AEC7) Signal transduction histidine-protein kinase... 77 5e-14
4PLED_CAUCR (Q9A5I5) Response regulator pleD (Stalked cell differ... 75 1e-13
5PILH_PSEAE (P43501) Protein pilH 75 1e-13
6BARA_SHIFL (P59342) Signal transduction histidine-protein kinase... 75 2e-13
7GACS_PSESY (P48027) Sensor protein gacS (EC 2.7.13.3) 74 3e-13
8PRRA_MYCTU (P0A5Z6) Transcriptional regulatory protein prrA 73 6e-13
9PRRA_MYCBO (P0A5Z7) Transcriptional regulatory protein prrA 73 6e-13
10PHOB_RHIME (Q52990) Phosphate regulon transcriptional regulatory... 73 8e-13
11COPR_PSESM (Q02540) Transcriptional activator protein copR 73 8e-13
12IRLR_BURPS (O31395) Transcriptional activator protein irlR 72 1e-12
13YYCF_BACSU (P37478) Transcriptional regulatory protein yycF 72 2e-12
14PRRA_MYCLE (Q50136) Transcriptional regulatory protein prrA 72 2e-12
15CZCR_RALME (Q44006) Transcriptional activator protein czcR 70 7e-12
16YCF27_PORAE (P28835) Probable transcriptional regulator ycf27 (O... 69 9e-12
17YKOG_BACSU (O34903) Hypothetical sensory transduction protein ykoG 69 9e-12
18ARLR_STAAN (Q99U73) Response regulator arlR 69 1e-11
19ARLR_STAAW (P0C001) Response regulator arlR 69 1e-11
20ARLR_STAAU (Q9KJN4) Response regulator arlR 69 1e-11
21ARLR_STAAS (Q6G9E6) Response regulator arlR 69 1e-11
22ARLR_STAAR (Q6GGZ3) Response regulator arlR 69 1e-11
23ARLR_STAAM (P0C000) Response regulator arlR 69 1e-11
24ARLR_STAAC (Q5HG04) Response regulator arlR 69 1e-11
25PHOP_BACSU (P13792) Alkaline phosphatase synthesis transcription... 69 1e-11
26PCOR_ECOLI (Q47456) Transcriptional regulatory protein pcoR 69 1e-11
27YCF27_CYAPA (P48259) Probable transcriptional regulator ycf27 (O... 68 2e-11
28CUSR_ECOLI (P0ACZ8) Transcriptional regulatory protein cusR 67 4e-11
29CUSR_ECOL6 (P0ACZ9) Transcriptional regulatory protein cusR 67 4e-11
30CUSR_ECO57 (P0AD00) Transcriptional regulatory protein cusR 67 4e-11
31PFER_PSEAE (Q04803) Transcriptional activator protein pfeR 67 4e-11
32YCF27_GUITH (O78428) Probable transcriptional regulator ycf27 (O... 67 4e-11
33SILR_SALTY (Q9ZHD3) Probable transcriptional regulatory protein ... 67 4e-11
34YCF27_PORPU (P51358) Probable transcriptional regulator ycf27 (O... 67 6e-11
35YCF29_PORPU (P51343) Probable transcriptional regulator ycf29 67 6e-11
36YXDJ_BACSU (P42421) Sensory transduction protein yxdJ 66 1e-10
37AFSQ1_STRCO (Q04942) Transcriptional regulatory protein afsQ1 66 1e-10
38YEDW_ECOLI (P76340) Probable transcriptional regulatory protein ... 65 1e-10
39CPXR_SHIFL (P0AE90) Transcriptional regulatory protein cpxR 65 2e-10
40CPXR_ECOLI (P0AE88) Transcriptional regulatory protein cpxR 65 2e-10
41CPXR_ECO57 (P0AE89) Transcriptional regulatory protein cpxR 65 2e-10
42TCTD_SALTY (P22104) Transcriptional regulatory protein tctD 65 2e-10
43PHOB_SHIFL (P45607) Phosphate regulon transcriptional regulatory... 65 2e-10
44PHOB_SHIDY (P45606) Phosphate regulon transcriptional regulatory... 65 2e-10
45PHOB_ECOLI (P0AFJ5) Phosphate regulon transcriptional regulatory... 65 2e-10
46PHOB_ECO57 (P0AFJ6) Phosphate regulon transcriptional regulatory... 65 2e-10
47PHOB_KLEPN (P45605) Phosphate regulon transcriptional regulatory... 65 2e-10
48YCLJ_BACSU (P94413) Hypothetical sensory transduction protein yclJ 65 2e-10
49YSO1_PLEBO (P51586) Hypothetical 14.6 kDa protein in sodA1 3'reg... 65 2e-10
50YCF27_GALSU (P28257) Probable transcriptional regulator ycf27 (O... 64 4e-10
51REGX3_MYCTU (Q11156) Sensory transduction protein regX3 64 5e-10
52REGX3_MYCBO (O07130) Sensory transduction protein regX3 64 5e-10
53REGX3_MYCSM (Q9F868) Sensory transduction protein regX3 64 5e-10
54CYAB_STIAU (P40138) Adenylate cyclase 2 (EC 4.6.1.1) (ATP pyroph... 63 6e-10
55MTRA_MYCTU (P0A5Z4) DNA-binding response regulator mtrA 63 6e-10
56MTRA_MYCPA (Q93CB8) DNA-binding response regulator mtrA 63 6e-10
57MTRA_MYCLE (Q9CCJ2) DNA-binding response regulator mtrA 63 6e-10
58MTRA_MYCBO (P0A5Z5) DNA-binding response regulator mtrA 63 6e-10
59EVGS_ECOLI (P30855) Sensor protein evgS precursor (EC 2.7.13.3) 63 8e-10
60YFHA_ECOLI (P0AFU4) Hypothetical protein yfhA (ORF-2) 63 8e-10
61YFHA_ECO57 (P0AFU5) Hypothetical protein yfhA 63 8e-10
62ATOC_ECOLI (Q06065) Acetoacetate metabolism regulatory protein a... 62 1e-09
63CREB_ECOLI (P08368) Transcriptional regulatory protein creB 62 1e-09
64QSEB_HAEIN (P45337) Transcriptional regulatory protein qseB 61 2e-09
65SRRA_STAAW (Q7A0U4) Transcriptional regulatory protein srrA (Sta... 60 4e-09
66SRRA_STAAU (Q9L524) Transcriptional regulatory protein srrA (Sta... 60 4e-09
67SRRA_STAAS (Q6G972) Transcriptional regulatory protein srrA (Sta... 60 4e-09
68SRRA_STAAR (Q6GGK6) Transcriptional regulatory protein srrA (Sta... 60 4e-09
69SRRA_STAAN (Q7A5H6) Transcriptional regulatory protein srrA (Sta... 60 4e-09
70SRRA_STAAM (Q7A2R6) Transcriptional regulatory protein srrA (Sta... 60 4e-09
71SRRA_STAAC (Q5HFT0) Transcriptional regulatory protein srrA (Sta... 60 4e-09
72CHVI_AGRTU (Q07783) Transcriptional regulatory protein chvI 60 4e-09
73EVGS_ECO57 (P58402) Sensor protein evgS precursor (EC 2.7.13.3) 60 5e-09
74RCSC_SALTI (Q56128) Sensor protein rcsC (EC 2.7.13.3) (Capsular ... 60 7e-09
75MCS4_SCHPO (P87323) Response regulator mcs4 (Mitotic catastrophe... 60 7e-09
76MAK1_SCHPO (Q9P7Q7) Peroxide stress-activated histidine kinase m... 59 9e-09
77DLTR_STRA5 (P0A4I0) Transcriptional regulatory protein dltR 59 9e-09
78DLTR_STRA3 (P0A4H9) Transcriptional regulatory protein dltR 59 9e-09
79RCSC_SALTY (P58662) Sensor protein rcsC (EC 2.7.13.3) (Capsular ... 59 1e-08
80YRKP_BACSU (P54443) Hypothetical sensory transduction protein yrkP 59 2e-08
81PHOB_PSEAE (P23620) Phosphate regulon transcriptional regulatory... 59 2e-08
82RESD_BACSU (P35163) Transcriptional regulatory protein resD 59 2e-08
83CHEY_BACSU (P24072) Chemotaxis protein cheY homolog 58 2e-08
84TCSA_EMENI (Q9P896) Two-component system protein A (EC 2.7.13.3) 58 2e-08
85CTRA_CAUCR (Q45994) Cell cycle transcriptional regulator ctrA (R... 58 3e-08
86RPRY_BACFR (Q9AE24) Transcriptional regulatory protein rprY 58 3e-08
87KDPE_ECOLI (P21866) KDP operon transcriptional regulatory protei... 58 3e-08
88YCBL_BACSU (P42244) Hypothetical sensory transduction protein ycbL 57 3e-08
89RCSC_ECOLI (P14376) Sensor kinase protein rcsC (EC 2.7.13.3) (Ca... 57 3e-08
90TORR_ECOLI (P38684) TorCAD operon transcriptional regulatory pro... 57 4e-08
91TORR_ECO57 (P58357) TorCAD operon transcriptional regulatory pro... 57 6e-08
92RCAC_FREDI (Q01473) Protein rcaC 57 6e-08
93CHVI_RHIME (P50350) Transcriptional regulatory protein chvI 57 6e-08
94ARCB_SHIFL (P0AEC4) Aerobic respiration control sensor protein a... 56 1e-07
95ARCB_ECOLI (P0AEC3) Aerobic respiration control sensor protein a... 56 1e-07
96ARCB_ECO57 (P58363) Aerobic respiration control sensor protein a... 56 1e-07
97PHOB_HAEIN (P45189) Phosphate regulon transcriptional regulatory... 55 1e-07
98CHEB_ARCFU (O29221) Chemotaxis response regulator protein-glutam... 55 1e-07
99YCF29_CYAPA (P48359) Probable transcriptional regulator ycf29 55 1e-07
100CHEB_HALMA (Q5V0B3) Chemotaxis response regulator protein-glutam... 55 2e-07
101YCF27_CYACA (Q9TLQ4) Probable transcriptional regulator ycf27 (O... 55 2e-07
102CIAR_STRR6 (P0A4H8) Transcriptional regulatory protein ciaR 55 2e-07
103CIAR_STRPN (P0A4H7) Transcriptional regulatory protein ciaR 55 2e-07
104GTCR_ANEMI (Q44929) Response regulator gtcR 55 2e-07
105SPHR_SYNP7 (P39663) Alkaline phosphatase synthesis transcription... 55 2e-07
106SP0A_CLODI (P52938) Stage 0 sporulation protein A homolog 54 4e-07
107DCTR_BACME (P39486) Probable C4-dicarboxylate response regulator... 54 4e-07
108FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7.... 54 5e-07
109REGX3_MYCLE (P54884) Sensory transduction protein regX3 54 5e-07
110QSEB_SALTY (P66795) Transcriptional regulatory protein qseB 54 5e-07
111QSEB_SALTI (P66796) Transcriptional regulatory protein qseB 54 5e-07
112SSK1_YEAST (Q07084) Osomolarity two-component system protein SSK1 53 6e-07
113PHOP_SHIFL (Q83RR0) Virulence transcriptional regulatory protein... 53 6e-07
114PHOP_ECOL6 (Q8CXZ9) Transcriptional regulatory protein phoP 53 6e-07
115PILG_PSEAE (P46384) Protein pilG 53 6e-07
116QSEB_ECOLI (P52076) Transcriptional regulatory protein qseB 53 6e-07
117ZRAR_KLEOX (Q9APD9) Transcriptional regulatory protein zraR 53 8e-07
118PHOP_ECOLI (P23836) Transcriptional regulatory protein phoP 53 8e-07
119QSEB_ECO57 (Q8XBS3) Transcriptional regulatory protein qseB 53 8e-07
120PETR_RHOCA (P31079) Protein petR 52 1e-06
121PHOP_SALTY (P14146) Virulence transcriptional regulatory protein... 52 1e-06
122PHOP_SALTI (Q8Z7H2) Virulence transcriptional regulatory protein... 52 1e-06
123PHOP_SALPA (Q5PMJ1) Virulence transcriptional regulatory protein... 52 1e-06
124OMPR_SHIFL (P0AA21) Transcriptional regulatory protein ompR 52 1e-06
125OMPR_SALTY (P0AA19) Transcriptional regulatory protein ompR 52 1e-06
126OMPR_SALTI (P0AA20) Transcriptional regulatory protein ompR 52 1e-06
127OMPR_ECOLI (P0AA16) Transcriptional regulatory protein ompR 52 1e-06
128OMPR_ECOL6 (P0AA17) Transcriptional regulatory protein ompR 52 1e-06
129OMPR_ECO57 (P0AA18) Transcriptional regulatory protein ompR 52 1e-06
130LUXO_VIBVY (Q7MM78) Regulatory protein luxO 52 1e-06
131LUXO_VIBVU (Q8CWJ5) Regulatory protein luxO 52 1e-06
132SKN7_YEAST (P38889) Transcription factor SKN7 (Peroxide sensitiv... 52 2e-06
133CUTR_STRLI (P0A4I2) Transcriptional regulatory protein cutR (Def... 52 2e-06
134CUTR_STRCO (P0A4I1) Transcriptional regulatory protein cutR (Def... 52 2e-06
135LUXQ_VIBVY (Q7MD16) Autoinducer 2 sensor kinase/phosphatase luxQ... 52 2e-06
136LUXQ_VIBVU (Q8D5Z6) Autoinducer 2 sensor kinase/phosphatase luxQ... 52 2e-06
137SLN1_YEAST (P39928) Osmolarity two-component system protein SLN1... 52 2e-06
138NTRC_KLEPN (P03029) Nitrogen assimilation regulatory protein 51 2e-06
139ZRAR_SALTY (P25852) Transcriptional regulatory protein zraR 51 2e-06
140ZRAR_SALTI (Q8Z333) Transcriptional regulatory protein zraR 51 2e-06
141SP0F_BACSU (P06628) Sporulation initiation phosphotransferase F ... 51 3e-06
142VANR_ENTFA (Q47744) Regulatory protein vanRB 51 3e-06
143NTRC_ECOLI (P0AFB8) Nitrogen regulation protein NR(I) 50 4e-06
144NTRC_ECO57 (P0AFB9) Nitrogen regulation protein NR(I) 50 4e-06
145CHEB_NATPD (Q3IRR4) Chemotaxis response regulator protein-glutam... 50 4e-06
146PHOP_SALCH (Q57QC3) Virulence transcriptional regulatory protein... 50 4e-06
147ZRAR_ECOLI (P14375) Transcriptional regulatory protein zraR 50 4e-06
148CPXR_HAEIN (P44895) Transcriptional regulatory protein cpxR homolog 50 5e-06
149CHEB_RHILO (Q98PD1) Chemotaxis response regulator protein-glutam... 50 5e-06
150PHOP_ECO57 (Q8X738) Transcriptional regulatory protein phoP 50 5e-06
151LUXO_VIBPA (Q87MX7) Regulatory protein luxO 50 5e-06
152LUXO_VIBHA (P54299) Luminescence regulatory protein luxO 50 5e-06
153BAER_ECOLI (P69228) Transcriptional regulatory protein baeR 50 5e-06
154BAER_ECOL6 (P69229) Transcriptional regulatory protein baeR 50 5e-06
155NTRC_PROVU (P28787) Nitrogen regulation protein NR(I) 50 7e-06
156ZRAR_ECO57 (Q8X613) Transcriptional regulatory protein zraR 50 7e-06
157SP0A_BACAN (P52928) Stage 0 sporulation protein A 50 7e-06
158LUXO1_VIBCH (Q9KT84) Regulatory protein luxO 50 7e-06
159CHEB_DESPS (Q6AJV3) Chemotaxis response regulator protein-glutam... 50 7e-06
160CHEY_THEMA (Q56312) Chemotaxis protein cheY 49 9e-06
161CHEY_TREPA (P96126) Chemotaxis protein cheY 49 9e-06
162VRAR_STAES (Q8CNP9) Response regulator protein vraR 49 9e-06
163VRAR_STAEQ (Q5HN50) Response regulator protein vraR 49 9e-06
164VRAR_STAAW (Q7A0I0) Response regulator protein vraR 49 9e-06
165VRAR_STAAU (P0C0Z1) Response regulator protein vraR 49 9e-06
166VRAR_STAAS (Q6G850) Response regulator protein vraR 49 9e-06
167VRAR_STAAR (Q6GFH3) Response regulator protein vraR 49 9e-06
168VRAR_STAAN (Q7A4R9) Response regulator protein vraR 49 9e-06
169VRAR_STAAM (Q7A2Q1) Response regulator protein vraR 49 9e-06
170VRAR_STAAC (Q5HEP0) Response regulator protein vraR 49 9e-06
171CHEY_PSEAE (Q51455) Chemotaxis protein cheY 49 9e-06
172CHEY_YEREN (Q93P00) Chemotaxis protein cheY 49 1e-05
173SP0A_BACTU (P0A4I4) Stage 0 sporulation protein A 49 2e-05
174SP0A_BACCR (P0A4I3) Stage 0 sporulation protein A 49 2e-05
175MAK2_SCHPO (O14002) Peroxide stress-activated histidine kinase m... 48 2e-05
176RPFG_XANC8 (Q4UU85) Response regulator rpfG 48 2e-05
177CHEY_YERPE (Q8D0P1) Chemotaxis protein cheY 48 3e-05
178CHEB_VIBF1 (Q5E3S1) Chemotaxis response regulator protein-glutam... 48 3e-05
179CHVI_RHISN (P50351) Transcriptional regulatory protein chvI 48 3e-05
180VRAR_STAS1 (Q49YS9) Response regulator protein vraR 48 3e-05
181PMRA_PECCC (Q70FH0) Transcriptional regulatory protein pmrA 48 3e-05
182BASR_SALTY (P36556) Transcriptional regulatory protein basR/pmrA 48 3e-05
183BCER_BACHD (Q9K621) Sensory transduction protein bceR 47 3e-05
184CCDB_BACSU (P45709) Protein ccdB 47 3e-05
185VRAR_STAHJ (Q4L7J5) Response regulator protein vraR 47 3e-05
186SP0A_MOOTA (P52941) Stage 0 sporulation protein A homolog 47 5e-05
187CHEB1_RALEJ (Q46V28) Chemotaxis response regulator protein-gluta... 47 5e-05
188CHEY_LISMO (P0A4H5) Chemotaxis protein cheY 47 5e-05
189CHEY_LISIN (P0A4H6) Chemotaxis protein cheY 47 5e-05
190CHEY_SALTY (P0A2D5) Chemotaxis protein cheY 47 5e-05
191CHEY_SALTI (P0A2D6) Chemotaxis protein cheY 47 5e-05
192CHEY_ENTCL (Q9FAD7) Chemotaxis protein cheY 47 5e-05
193TCSB_EMENI (Q9P4U6) Two-component system protein B precursor (EC... 47 6e-05
194CHEY_SHIFL (P0AE69) Chemotaxis protein cheY 47 6e-05
195CHEY_ECOLI (P0AE67) Chemotaxis protein cheY 47 6e-05
196CHEY_ECO57 (P0AE68) Chemotaxis protein cheY 47 6e-05
197NTRC_SALTY (P41789) Nitrogen regulation protein NR(I) 47 6e-05
198SP0A_CLOPA (P52940) Stage 0 sporulation protein A homolog 47 6e-05
199SP0A_BREPA (P52929) Stage 0 sporulation protein A (Fragment) 47 6e-05
200SPAR_BACSU (P33112) Subtilin biosynthesis regulatory protein spaR 46 8e-05
201CHEB_HALSA (Q9HQW6) Chemotaxis response regulator protein-glutam... 46 8e-05
202NISR_LACLA (Q07597) Nisin biosynthesis regulatory protein nisR 46 8e-05
203SP0A_BACSU (P06534) Stage 0 sporulation protein A 46 8e-05
204CHEY_ECOL6 (Q8FGP6) Chemotaxis protein cheY 46 8e-05
205CHEY_CAMJE (P71129) Chemotaxis protein cheY homolog 46 1e-04
206CHEB3_PSEPK (Q88MS5) Chemotaxis response regulator protein-gluta... 46 1e-04
207RCP1_SYNY3 (Q55169) Response regulator rcp1 46 1e-04
208LIAR_BACSU (O32197) Sensory transduction protein liaR 46 1e-04
209CHEB_SYMTH (Q67P67) Chemotaxis response regulator protein-glutam... 46 1e-04
210RPFC_XANCP (P0C0F6) Sensory/regulatory protein rpfC (EC 2.7.13.3) 45 1e-04
211SP0A_CLOBE (P52936) Stage 0 sporulation protein A homolog (Fragm... 45 1e-04
212TRPO_PSEAE (P24908) Putative transcriptional regulator 45 1e-04
213NARP_ECOLI (P31802) Nitrate/nitrite response regulator protein narP 45 2e-04
214RPFC_XANC8 (P0C0F7) Sensory/regulatory protein rpfC (EC 2.7.13.3) 45 2e-04
215BVGS_BORPE (P16575) Virulence sensor protein bvgS precursor (EC ... 45 2e-04
216CHEB3_PSESM (Q886S8) Chemotaxis response regulator protein-gluta... 45 2e-04
217CHEB3_PSE14 (Q48F23) Chemotaxis response regulator protein-gluta... 45 2e-04
218LUXN_VIBHA (P54301) Autoinducer 1 sensor kinase/phosphatase luxN... 45 2e-04
219CHEB_METMP (P62647) Chemotaxis response regulator protein-glutam... 45 2e-04
220CHEB2_BURS3 (Q393F2) Chemotaxis response regulator protein-gluta... 45 2e-04
221BCER_BACSU (O34951) Sensory transduction protein bceR 45 2e-04
222SP0A_CLOAB (P58253) Stage 0 sporulation protein A homolog 45 2e-04
223CHEB1_VIBVY (Q7MIQ5) Chemotaxis response regulator protein-gluta... 45 2e-04
224CHEB1_VIBVU (Q8DB67) Chemotaxis response regulator protein-gluta... 45 2e-04
225HNR_SHIFL (P0AEV3) Protein hnr 45 2e-04
226HNR_ECOLI (P0AEV1) Protein hnr 45 2e-04
227HNR_ECO57 (P0AEV2) Protein hnr 45 2e-04
228CSSR_BACSU (O32192) Transcriptional regulatory protein cssR 45 2e-04
229CHEB2_PSEU2 (Q4ZWW3) Chemotaxis response regulator protein-gluta... 45 2e-04
230CHEB1_PSEPF (Q3KHF6) Chemotaxis response regulator protein-gluta... 45 2e-04
231SP0A_BACME (P52932) Stage 0 sporulation protein A (Fragment) 45 2e-04
232PILR_PSEAE (Q00934) Type 4 fimbriae expression regulatory protei... 44 3e-04
233SP0A_BACST (P52934) Stage 0 sporulation protein A 44 3e-04
234SP0A_BACSH (P42012) Stage 0 sporulation protein A 44 4e-04
235ARR7_ARATH (Q9ZWS7) Two-component response regulator ARR7 44 4e-04
236ARCA_HAEIN (P44918) Aerobic respiration control protein arcA hom... 44 4e-04
237YDFI_BACSU (P96686) Sensory transduction protein ydfI 44 4e-04
238Y0G0_VIBCH (Q9KL96) Hypothetical response regulatory protein VCA... 44 4e-04
239CHEB3_PSEAE (Q9HXT8) Chemotaxis response regulator protein-gluta... 44 4e-04
240CHEY_HELPJ (Q9ZM64) Chemotaxis protein cheY homolog 44 5e-04
241CHEV_BACSU (P37599) Chemotaxis protein cheV 44 5e-04
242LUXQ_VIBCH (Q9KLK7) Autoinducer 2 sensor kinase/phosphatase luxQ... 44 5e-04
243DEGU_BREBE (P54662) Transcriptional regulatory protein degU 44 5e-04
244DCTR_BACHD (Q9K998) Probable C4-dicarboxylate response regulator... 43 7e-04
245CHEB1_VIBPA (Q87MK5) Chemotaxis response regulator protein-gluta... 43 7e-04
246PRR1_SCHPO (O14283) Transcription factor prr1 (Pombe response re... 43 7e-04
247CHEB1_VIBCH (Q9KQD8) Chemotaxis response regulator protein-gluta... 43 7e-04
248CHEB1_PSEF5 (Q4KHL8) Chemotaxis response regulator protein-gluta... 43 7e-04
249BVGS_BORPA (P40330) Virulence sensor protein bvgS precursor (EC ... 43 7e-04
250BVGS_BORBR (P26762) Virulence sensor protein bvgS precursor (EC ... 43 7e-04
251BASR_ECOLI (P30843) Transcriptional regulatory protein basR/pmrA 43 7e-04
252CHEB2_RHOCE (P72253) Chemotaxis response regulator protein-gluta... 43 7e-04
253PATA_ANASP (P39048) Protein patA (PAT-1) 43 7e-04
254ARR3_ARATH (Q9ZWS9) Two-component response regulator ARR3 43 9e-04
255CHEB2_BURPS (Q63J47) Chemotaxis response regulator protein-gluta... 43 9e-04
256CHEB2_BURP1 (Q3JJY2) Chemotaxis response regulator protein-gluta... 43 9e-04
257CHEB2_BURMA (Q4V2X4) Chemotaxis response regulator protein-gluta... 43 9e-04
258SP0F_BACTK (P52942) Sporulation initiation phosphotransferase F ... 43 9e-04
259GACA_PSEVI (P95582) Response regulator gacA (Global activator) 43 9e-04
260GACA_PSEU2 (Q52376) Response regulator gacA (Global activator) 43 9e-04
261NARL_SHIFL (P0AF31) Nitrate/nitrite response regulator protein narL 43 9e-04
262NARL_ECOLI (P0AF28) Nitrate/nitrite response regulator protein narL 43 9e-04
263NARL_ECOL6 (P0AF29) Nitrate/nitrite response regulator protein narL 43 9e-04
264NARL_ECO57 (P0AF30) Nitrate/nitrite response regulator protein narL 43 9e-04
265ARCA_SHIFL (P0A9Q4) Aerobic respiration control protein arcA 43 9e-04
266ARCA_ECOLI (P0A9Q1) Aerobic respiration control protein arcA (Dy... 43 9e-04
267ARCA_ECOL6 (P0A9Q2) Aerobic respiration control protein arcA 43 9e-04
268ARCA_ECO57 (P0A9Q3) Aerobic respiration control protein arcA 43 9e-04
269RSTA_ECOLI (P52108) Transcriptional regulatory protein rstA 43 9e-04
270CHEY_HELPY (P71403) Chemotaxis protein cheY homolog 43 9e-04
271CHEB1_PSEAE (O87125) Chemotaxis response regulator protein-gluta... 43 9e-04
272CHEB1_GEOSL (P62638) Chemotaxis response regulator protein-gluta... 43 9e-04
273RSSB_SERMA (Q8GP20) Swarming motility regulation protein rssB 42 0.001
274LUXQ_VIBPA (Q87GU5) Autoinducer 2 sensor kinase/phosphatase luxQ... 42 0.001
275CHEB2_DESVH (P62637) Chemotaxis response regulator protein-gluta... 42 0.001
276ARR4_ARATH (O82798) Two-component response regulator ARR4 (Respo... 42 0.001
277ARR15_ARATH (Q7G8V2) Two-component response regulator ARR15 42 0.001
278CHEB3_VIBCH (Q9KS59) Chemotaxis response regulator protein-gluta... 42 0.001
279CHEB_COLP3 (Q485K0) Chemotaxis response regulator protein-glutam... 42 0.001
280APRR1_ARATH (Q9LKL2) Two-component response regulator-like APRR1... 42 0.001
281DCTR_BACSU (P96602) Probable C4-dicarboxylate response regulator... 42 0.002
282CHEB1_PSEPK (Q88EW5) Chemotaxis response regulator protein-gluta... 42 0.002
283CHEB1_DESDG (Q311M8) Chemotaxis response regulator protein-gluta... 42 0.002
284GACA_PSEAE (Q51373) Response regulator gacA (Global activator) 41 0.003
285ARR6_ARATH (Q9ZWS6) Two-component response regulator ARR6 41 0.003
286CHEB1_BURS3 (Q394I6) Chemotaxis response regulator protein-gluta... 41 0.003
287CHEB_THEMA (Q9WYN9) Chemotaxis response regulator protein-glutam... 41 0.003
288SP0A_BACCI (P52931) Stage 0 sporulation protein A (Fragment) 41 0.003
289NTRC_RHOCA (P09432) Nitrogen regulation protein ntrC 41 0.003
290ARR5_ARATH (Q9SB04) Two-component response regulator ARR5 (Respo... 41 0.003
291ARR17_ARATH (Q9FPR6) Two-component response regulator ARR17 41 0.003
292CHEB1_PSEPU (O52262) Chemotaxis response regulator protein-gluta... 41 0.003
293CHEB2_CAUCR (Q9AAK0) Chemotaxis response regulator protein-gluta... 40 0.004
294YPH5_THIVI (P45365) Hypothetical 76.5 kDa protein in phbC 3'regi... 40 0.004
295LUXQ_VIBHA (P54302) Autoinducer 2 sensor kinase/phosphatase luxQ... 40 0.004
296FIXJ_BRAJA (P23221) Transcriptional regulatory protein fixJ 40 0.004
297CHEB_PYRKO (Q5JF95) Chemotaxis response regulator protein-glutam... 40 0.006
298CHEB2_PSEPF (Q3KFZ6) Chemotaxis response regulator protein-gluta... 40 0.006
299CHEB2_PSEF5 (Q4KG36) Chemotaxis response regulator protein-gluta... 40 0.006
300CHEB2_PHOPR (Q6LTM2) Chemotaxis response regulator protein-gluta... 40 0.007
301CHEB1_METMA (Q8Q009) Chemotaxis response regulator protein-gluta... 40 0.007
302ARR10_ARATH (O49397) Two-component response regulator ARR10 (Rec... 40 0.007
303ALGB_PSESM (Q88AQ2) Alginate biosynthesis transcriptional regula... 40 0.007
304ALGB_PSEPK (Q88RJ6) Alginate biosynthesis transcriptional regula... 40 0.007
305CHEB_IDILO (Q5QZQ3) Chemotaxis response regulator protein-glutam... 40 0.007
306Y2151_LEPIN (P24086) Hypothetical protein LA_2151 (ORF 2) 40 0.007
307Y1769_LEPIC (Q72RH6) Hypothetical protein LIC_11769 40 0.007
308YXJL_BACSU (P55184) Hypothetical sensory transduction protein yxjL 40 0.007
309UVRY_SHIFL (P0AED6) Response regulator uvrY 40 0.007
310UVRY_ECOLI (P0AED5) Response regulator uvrY 40 0.007
311UVRY_ECOL6 (P66797) Response regulator uvrY 40 0.007
312UVRY_ECO57 (P66798) Response regulator uvrY 40 0.007
313ARR16_ARATH (Q9SHC2) Two-component response regulator ARR16 40 0.007
314VANR_ENTFC (Q06239) Regulatory protein vanR 39 0.010
315CHEB_TREPA (O83639) Chemotaxis response regulator protein-glutam... 39 0.010
316DEGU_BACSU (P13800) Transcriptional regulatory protein degU (Pro... 39 0.010
317CHEB2_CARHZ (Q3ADA6) Chemotaxis response regulator protein-gluta... 39 0.010
318CHEB2_AZOBR (Q8VL08) Chemotaxis response regulator protein-gluta... 39 0.010
319CHEB1_LEPIN (Q8F6P9) Chemotaxis response regulator protein-gluta... 39 0.012
320CHEB1_LEPIC (P62641) Chemotaxis response regulator protein-gluta... 39 0.012
321CHEB2_CHRVO (Q7NZB3) Chemotaxis response regulator protein-gluta... 39 0.012
322Y8J3_VIBVU (Q8D4U6) Hypothetical response regulatory protein VV2... 39 0.012
323ETR1_MALDO (O81122) Ethylene receptor (EC 2.7.13.3) 39 0.012
324ARR12_ARATH (P62598) Two-component response regulator ARR12 39 0.012
325CHEB_OCEIH (Q8EQW0) Chemotaxis response regulator protein-glutam... 39 0.016
326REGA_DICDI (Q23917) 3',5'-cyclic-nucleotide phosphodiesterase re... 39 0.016
327ETR1_CUCSA (Q9SSY6) Ethylene receptor (EC 2.7.13.3) (CS-ETR1) 39 0.016
328ETR1_CUCMR (O82436) Ethylene receptor (EC 2.7.13.3) (MEETR1) (Cm... 39 0.016
329PRR95_ORYSA (Q689G6) Two-component response regulator-like PRR95... 39 0.016
330CHEB3_PSEU2 (Q4ZQV7) Chemotaxis response regulator protein-gluta... 39 0.016
331CHEB1_PSESM (Q884V3) Chemotaxis response regulator protein-gluta... 39 0.016
332CHEB2_PSE14 (Q48GG6) Chemotaxis response regulator protein-gluta... 39 0.016
333CHEB_PSEHT (Q3IDZ3) Chemotaxis response regulator protein-glutam... 38 0.021
334REGA_RHOCA (P42508) Photosynthetic apparatus regulatory protein ... 38 0.021
335ETR1_TOBAC (O48929) Ethylene receptor (EC 2.7.13.3) (NT-ETR1) 38 0.021
336ETR1_PRUPE (Q9M7M1) Ethylene receptor (EC 2.7.13.3) 38 0.021
337ARR21_ARATH (Q9LYP5) Putative two-component response regulator A... 38 0.021
338NTRC_RHIME (P10577) Nitrogen assimilation regulatory protein 38 0.021
339ARR1_ARATH (Q940D0) Two-component response regulator ARR1 38 0.028
340GACA_PSEFL (P32967) Response regulator gacA (Global activator) (... 38 0.028
341Y4XI_RHISN (P55701) Probable transcriptional regulatory protein ... 38 0.028
342Y4021_VIBPA (Q87K77) Hypothetical response regulatory protein VP... 37 0.036
343CHEB2_XANCP (Q8P7A6) Chemotaxis response regulator protein-gluta... 37 0.036
344CHEB1_XANC8 (Q4UWU6) Chemotaxis response regulator protein-gluta... 37 0.036
345CHEB_NITWN (Q3SVA1) Chemotaxis response regulator protein-glutam... 37 0.036
346CHEB1_METAC (Q8TLG9) Chemotaxis response regulator protein-gluta... 37 0.036
347FIMZ_SALTY (P26319) Fimbriae Z protein 37 0.036
348BVGA_BORPE (P0A4H2) Virulence factors putative positive transcri... 37 0.047
349BVGA_BORPA (P0A4H4) Virulence factors putative positive transcri... 37 0.047
350BVGA_BORBR (P0A4H3) Virulence factors putative positive transcri... 37 0.047
351CHEB_THETN (Q8RAZ3) Chemotaxis response regulator protein-glutam... 37 0.047
352ARR11_ARATH (Q9FXD6) Two-component response regulator ARR11 (Rec... 37 0.047
353NTRX_AZOCA (Q04849) Nitrogen assimilation regulatory protein ntrX 37 0.047
354CHEB1_SHEON (Q8ECD7) Chemotaxis response regulator protein-gluta... 37 0.047
355CHEB_PYRAB (Q9UYF3) Chemotaxis response regulator protein-glutam... 37 0.047
356CHEB3_CHRVO (Q7NSI8) Chemotaxis response regulator protein-gluta... 37 0.047
357CHEB1_XANOR (Q5H2V2) Chemotaxis response regulator protein-gluta... 37 0.047
358CHEB2_XANOR (Q5GYV8) Chemotaxis response regulator protein-gluta... 37 0.047
359CHEB2_XANC8 (Q4UU97) Chemotaxis response regulator protein-gluta... 37 0.047
360CHEB1_XANCP (Q8P9J7) Chemotaxis response regulator protein-gluta... 37 0.047
361CHEB1_XANC5 (Q3BUA2) Chemotaxis response regulator protein-gluta... 37 0.047
362CHEB1_XANAC (Q8PLB4) Chemotaxis response regulator protein-gluta... 37 0.047
363REGA_RHOSU (O82868) Photosynthetic apparatus regulatory protein ... 37 0.047
364CHEB3_GEOSL (P62640) Chemotaxis response regulator protein-gluta... 37 0.047
365CHEB_BACHD (Q9KA55) Chemotaxis response regulator protein-glutam... 37 0.047
366CHEB_PYRHO (O58192) Chemotaxis response regulator protein-glutam... 37 0.062
367CHEB_BACLD (Q65JK6) Chemotaxis response regulator protein-glutam... 37 0.062
368CHEB3_RHOSH (O33558) Chemotaxis response regulator protein-gluta... 37 0.062
369DCTD_RHIME (P13632) C4-dicarboxylate transport transcriptional r... 36 0.081
370CHEB1_RHOS4 (Q3J653) Chemotaxis response regulator protein-gluta... 36 0.081
371MAK3_SCHPO (O74539) Peroxide stress-activated histidine kinase m... 36 0.081
372PRR1_ORYSA (Q689G9) Two-component response regulator-like PRR1 (... 36 0.11
373ALGB_PSEAE (P23747) Alginate biosynthesis transcriptional regula... 36 0.11
374ARR8_ARATH (O80365) Two-component response regulator ARR8 (Respo... 36 0.11
375LYTR_STRA5 (Q8E217) Sensory transduction protein lytR 36 0.11
376LYTR_STRA3 (Q8E7H3) Sensory transduction protein lytR 36 0.11
377CHEB_TREDE (P62646) Chemotaxis response regulator protein-glutam... 36 0.11
378FIXJ_RHIME (P10958) Transcriptional regulatory protein fixJ 36 0.11
379MALR_BACSU (O05251) Transcriptional regulatory protein malR (Mal... 35 0.14
380ARR22_ARATH (Q9M8Y4) Two-component response regulator ARR22 35 0.14
381NTRC_BRASR (P10576) Nitrogen assimilation regulatory protein 35 0.14
382CHEB2_XANC5 (Q3BR57) Chemotaxis response regulator protein-gluta... 35 0.14
383CHEB2_XANAC (Q8PIM5) Chemotaxis response regulator protein-gluta... 35 0.14
384CHEB3_SHEON (Q8EEQ0) Chemotaxis response regulator protein-gluta... 35 0.14
385ARR9_ARATH (O80366) Two-component response regulator ARR9 (Respo... 35 0.14
386ETR1_PASED (Q9ZWL6) Ethylene receptor (EC 2.7.13.3) (PE-ETR1) 35 0.18
387DCTD_RHILE (P10046) C4-dicarboxylate transport transcriptional r... 35 0.18
388CHEB2_RHOPA (P62644) Chemotaxis response regulator protein-gluta... 35 0.18
389ARR18_ARATH (Q9FGT7) Two-component response regulator ARR18 35 0.18
390ETR1_PELHO (Q9XH58) Ethylene receptor 1 (EC 2.7.13.3) (PhETR1) 35 0.23
391CHEB1_PHOPR (Q6LU34) Chemotaxis response regulator protein-gluta... 35 0.23
392CHEB_THIDA (Q3SIG0) Chemotaxis response regulator protein-glutam... 35 0.23
393CHEB_BACSU (Q05522) Chemotaxis response regulator protein-glutam... 35 0.23
394ARR2_ARATH (Q9ZWJ9) Two-component response regulator ARR2 (Recei... 35 0.23
395CHEB_RALSO (Q8XQ83) Chemotaxis response regulator protein-glutam... 34 0.31
396CHEB2_BRAJA (Q89T55) Chemotaxis response regulator protein-gluta... 34 0.31
397CHEB_GEOKA (Q5L0L0) Chemotaxis response regulator protein-glutam... 34 0.31
398ETR1_ARATH (P49333) Ethylene receptor (EC 2.7.13.3) 34 0.40
399CHEB2_METMA (Q8PX96) Chemotaxis response regulator protein-gluta... 34 0.40
400CHEB2_METAC (Q8TUQ0) Chemotaxis response regulator protein-gluta... 34 0.40
401ARR14_ARATH (Q8L9Y3) Two-component response regulator ARR14 34 0.40
402CHEB1_CARHZ (Q3ADG9) Chemotaxis response regulator protein-gluta... 33 0.52
403NODW_BRAJA (P15940) Nodulation protein W 33 0.52
404LYTR_STRMU (Q8DVB7) Sensory transduction protein lytR 33 0.52
405APRR9_ARATH (Q8L500) Two-component response regulator-like APRR9... 33 0.52
406CHEB1_PSEU2 (Q4ZYD3) Chemotaxis response regulator protein-gluta... 33 0.52
407MOAA_SYNPW (Q9EYN8) Molybdenum cofactor biosynthesis protein A 33 0.68
408DCTR_RHOCA (P37740) C4-dicarboxylate transport transcriptional r... 33 0.68
409FIMZ_ECOLI (P0AEL8) Fimbriae Z protein 33 0.68
410FIMZ_ECO57 (P0AEL9) Fimbriae Z protein 33 0.68
411ETR2_LYCES (O49187) Ethylene receptor 2 (EC 2.7.13.3) (LeETR2) 33 0.68
412CHEB_PELCD (Q3A5A8) Chemotaxis response regulator protein-glutam... 33 0.89
413CHEB2_RHOS4 (Q3J1W3) Chemotaxis response regulator protein-gluta... 33 0.89
414CHEB2_RHOSH (Q8KLS5) Chemotaxis response regulator protein-gluta... 33 0.89
415CHEB2_PSESM (Q888V8) Chemotaxis response regulator protein-gluta... 33 0.89
416CHEB1_PSE14 (Q48ND9) Chemotaxis response regulator protein-gluta... 33 0.89
417APRR3_ARATH (Q9LVG4) Two-component response regulator-like APRR3... 33 0.89
418CHEB_SHISS (Q3Z2R1) Chemotaxis response regulator protein-glutam... 33 0.89
419CHEB_SHIFL (Q83R52) Chemotaxis response regulator protein-glutam... 33 0.89
420CHEB_SHIBS (Q322K2) Chemotaxis response regulator protein-glutam... 33 0.89
421CHEB_SALTY (P04042) Chemotaxis response regulator protein-glutam... 33 0.89
422CHEB_SALTI (Q8Z5V2) Chemotaxis response regulator protein-glutam... 33 0.89
423CHEB_SALPA (Q5PMY3) Chemotaxis response regulator protein-glutam... 33 0.89
424CHEB_SALCH (Q57N81) Chemotaxis response regulator protein-glutam... 33 0.89
425CHEB_ECOLI (P07330) Chemotaxis response regulator protein-glutam... 33 0.89
426CHEB_ECOL6 (Q8FGP5) Chemotaxis response regulator protein-glutam... 33 0.89
427CHEB_ECO57 (Q8XCF9) Chemotaxis response regulator protein-glutam... 33 0.89
428CHEB_ENTCL (Q9FAD8) Chemotaxis response regulator protein-glutam... 32 1.2
429AGMR_PSEAE (P29369) Glycerol metabolism activator (Protein agmR) 32 1.2
430ETR1_BRAOL (O49230) Ethylene receptor (EC 2.7.13.3) 32 1.2
431REGA_RHOS4 (Q53228) Photosynthetic apparatus regulatory protein ... 32 1.2
432CHEB_PHOLL (Q7N5T1) Chemotaxis response regulator protein-glutam... 32 1.5
433CHEB_BORPE (Q7VZ94) Chemotaxis response regulator protein-glutam... 32 1.5
434CHEB_BORPA (Q7WAA4) Chemotaxis response regulator protein-glutam... 32 1.5
435CHEB_BORBR (Q7WJE7) Chemotaxis response regulator protein-glutam... 32 1.5
436CHEB1_DECAR (Q47I43) Chemotaxis response regulator protein-gluta... 32 1.5
437APRR5_ARATH (Q6LA42) Two-component response regulator-like APRR5... 32 1.5
438SUC4_ARATH (Q9FE59) Sucrose transport protein SUC4 (Sucrose perm... 32 2.0
439CHEB3_RHOPA (P62645) Chemotaxis response regulator protein-gluta... 32 2.0
440CHEB3_BRAJA (Q89SQ1) Chemotaxis response regulator protein-gluta... 32 2.0
441CHEB2_DECAR (Q47GX7) Chemotaxis response regulator protein-gluta... 32 2.0
442CHEB2_SHEON (Q8EF61) Chemotaxis response regulator protein-gluta... 32 2.0
443ETR2_PELHO (Q9XH57) Ethylene receptor 2 (EC 2.7.13.3) (PhETR2) 32 2.0
444CHEB_METBF (Q46DT6) Chemotaxis response regulator protein-glutam... 31 2.6
445ARR19_ARATH (Q9M9B9) Putative two-component response regulator A... 31 2.6
446LAT_HUMAN (O43561) Linker for activation of T-cells family membe... 31 2.6
447CHEB2_PSEAE (Q9I6V9) Chemotaxis response regulator protein-gluta... 31 2.6
448H1L1_OSTED (Q86QH9) Sperm-specific H1/protamine-like protein typ... 31 3.4
449MOXX_PARDE (P29904) Methanol utilization control regulatory prot... 31 3.4
450CHEB3_BURS3 (Q39KQ1) Chemotaxis response regulator protein-gluta... 31 3.4
451CHEB1_BURPS (Q63PS2) Chemotaxis response regulator protein-gluta... 31 3.4
452RRF1_DESVH (P33394) Protein rrf1 31 3.4
453CHEB1_CHRVO (Q7NV40) Chemotaxis response regulator protein-gluta... 31 3.4
454YCF29_GUITH (O78417) Probable transcriptional regulator ycf29 31 3.4
455CHEB1_BURP1 (Q3JY65) Chemotaxis response regulator protein-gluta... 31 3.4
456CHEB1_BURMA (Q62G12) Chemotaxis response regulator protein-gluta... 31 3.4
457AUTS2_HUMAN (Q8WXX7) Autism susceptibility gene 2 protein 31 3.4
458NAS29_CAEEL (Q20958) Zinc metalloproteinase nas-29 precursor (EC... 30 4.4
459CHEB1_DESVH (P62636) Chemotaxis response regulator protein-gluta... 30 4.4
460CHEB_NITEU (Q820K0) Chemotaxis response regulator protein-glutam... 30 4.4
461CHEB2_DESDG (Q30ZJ5) Chemotaxis response regulator protein-gluta... 30 4.4
462KRA61_RABIT (Q02957) Keratin, glycine/tyrosine-rich of hair 30 5.8
463CHEB_CLOAB (Q97GZ3) Chemotaxis response regulator protein-glutam... 30 5.8
464CHEB2_VIBVY (Q7MBQ5) Chemotaxis response regulator protein-gluta... 30 5.8
465EGR1_HUMAN (P18146) Early growth response protein 1 (EGR-1) (Kro... 30 5.8
466FTSQ_CAUCR (O68326) Cell division protein ftsQ homolog 30 5.8
467CHEB2_VIBVU (Q8D4X6) Chemotaxis response regulator protein-gluta... 30 5.8
468PGTA_SALTY (P06184) Phosphoglycerate transport system transcript... 30 5.8
469SPL7_ARATH (Q8S9G8) Squamosa promoter-binding-like protein 7 30 7.6
470ETR1_LYCES (Q41342) Ethylene receptor 1 (EC 2.7.13.3) (LeETR1) 30 7.6
471TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) ... 30 7.6
472NET2_HUMAN (O00634) Netrin-2-like protein precursor 30 7.6
473CHEB2_RALEJ (Q46PH7) Chemotaxis response regulator protein-gluta... 30 7.6
474HCLS1_MOUSE (P49710) Hematopoietic lineage cell-specific protein... 29 9.9
475BRO1_ASPFU (Q4X0Z5) Vacuolar protein-sorting protein bro1 (BRO d... 29 9.9
476PHYB_ARATH (P14713) Phytochrome B 29 9.9
477CITB_KLEPN (P52688) Transcriptional regulatory protein citB 29 9.9

>BARA_ECOLI (P0AEC5) Signal transduction histidine-protein kinase barA (EC|
           2.7.13.3)
          Length = 918

 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 42/84 (50%), Positives = 51/84 (60%)
 Frame = -1

Query: 511 VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMA 332
           V L   G   V+ A++   DLILMD+ +P MDG  A   +   P  QQTPVIA+TAHAMA
Sbjct: 694 VELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMA 753

Query: 331 SDREKAIAAGCDDYDTKPIELPRL 260
             +EK + AG  DY  KPIE  RL
Sbjct: 754 GQKEKLLGAGMSDYLAKPIEEERL 777



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>BARA_ECOL6 (P0AEC6) Signal transduction histidine-protein kinase barA (EC|
           2.7.13.3)
          Length = 918

 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 42/84 (50%), Positives = 51/84 (60%)
 Frame = -1

Query: 511 VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMA 332
           V L   G   V+ A++   DLILMD+ +P MDG  A   +   P  QQTPVIA+TAHAMA
Sbjct: 694 VELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMA 753

Query: 331 SDREKAIAAGCDDYDTKPIELPRL 260
             +EK + AG  DY  KPIE  RL
Sbjct: 754 GQKEKLLGAGMSDYLAKPIEEERL 777



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>BARA_ECO57 (P0AEC7) Signal transduction histidine-protein kinase barA (EC|
           2.7.13.3)
          Length = 918

 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 42/84 (50%), Positives = 51/84 (60%)
 Frame = -1

Query: 511 VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMA 332
           V L   G   V+ A++   DLILMD+ +P MDG  A   +   P  QQTPVIA+TAHAMA
Sbjct: 694 VELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMA 753

Query: 331 SDREKAIAAGCDDYDTKPIELPRL 260
             +EK + AG  DY  KPIE  RL
Sbjct: 754 GQKEKLLGAGMSDYLAKPIEEERL 777



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>PLED_CAUCR (Q9A5I5) Response regulator pleD (Stalked cell|
           differentiation-controlling protein) [Includes:
           Diguanylate cyclase (EC 4.6.1.-) (DGC)]
          Length = 454

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 38/103 (36%), Positives = 61/103 (59%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L  +LT + +EV  A DG   +  A R+ PD+IL+D+ +P MDG+   R+LK DP  + 
Sbjct: 17  LLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRH 76

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239
            PV+ +TA     DR + + +G  D+ TKPI+   L +++  L
Sbjct: 77  IPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSL 119



 Score = 35.4 bits (80), Expect = 0.14
 Identities = 18/75 (24%), Positives = 39/75 (52%)
 Frame = -1

Query: 454 DLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPI 275
           DL++++ +    DG   T  L+++   +Q PV+A+          KA+  G +D  ++PI
Sbjct: 197 DLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPI 256

Query: 274 ELPRLLSKIAQLLER 230
           +   L +++   ++R
Sbjct: 257 DPQELSARVKTQIQR 271



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>PILH_PSEAE (P43501) Protein pilH|
          Length = 121

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 40/103 (38%), Positives = 61/103 (59%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L+  L + G +V+ A +G  GV  AR+E+PD++LMD+ +P ++G++ATRQL  D E    
Sbjct: 17  LTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAI 76

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236
           PVI +T     +D+      G  DY TKP++   LL  I  +L
Sbjct: 77  PVIIVTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVL 119



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>BARA_SHIFL (P59342) Signal transduction histidine-protein kinase barA (EC|
           2.7.13.3)
          Length = 918

 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 41/84 (48%), Positives = 51/84 (60%)
 Frame = -1

Query: 511 VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMA 332
           V L   G   V+ A++   DLILMD+ +P MDG  A   +   P  +QTPVIA+TAHAMA
Sbjct: 694 VELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQRQTPVIAVTAHAMA 753

Query: 331 SDREKAIAAGCDDYDTKPIELPRL 260
             +EK + AG  DY  KPIE  RL
Sbjct: 754 GQKEKLLGAGMSDYLAKPIEEERL 777



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>GACS_PSESY (P48027) Sensor protein gacS (EC 2.7.13.3)|
          Length = 907

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 39/85 (45%), Positives = 57/85 (67%), Gaps = 3/85 (3%)
 Frame = -1

Query: 520 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKA-DPELQQT--PVIAL 350
           G EVV    G A V+  ++E  DL+LMD+ +P MDG +AT  ++A + E  Q+  P++AL
Sbjct: 680 GAEVVAVEGGYAAVNAVQQEAFDLVLMDVQMPGMDGRQATEAIRAWEAERNQSSLPIVAL 739

Query: 349 TAHAMASDREKAIAAGCDDYDTKPI 275
           TAHAMA+++   + +G DDY TKPI
Sbjct: 740 TAHAMANEKRSLLQSGMDDYLTKPI 764



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>PRRA_MYCTU (P0A5Z6) Transcriptional regulatory protein prrA|
          Length = 233

 Score = 73.2 bits (178), Expect = 6e-13
 Identities = 40/105 (38%), Positives = 57/105 (54%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L R L   GFEV  A DGA  + +A   +PD I++D+++PV+DG      L+A       
Sbjct: 23  LERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMD--NDV 80

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           PV  L+A +   DR   + AG DDY  KP  L  L++++  LL R
Sbjct: 81  PVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125



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>PRRA_MYCBO (P0A5Z7) Transcriptional regulatory protein prrA|
          Length = 233

 Score = 73.2 bits (178), Expect = 6e-13
 Identities = 40/105 (38%), Positives = 57/105 (54%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L R L   GFEV  A DGA  + +A   +PD I++D+++PV+DG      L+A       
Sbjct: 23  LERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMD--NDV 80

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           PV  L+A +   DR   + AG DDY  KP  L  L++++  LL R
Sbjct: 81  PVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125



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>PHOB_RHIME (Q52990) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 227

 Score = 72.8 bits (177), Expect = 8e-13
 Identities = 37/106 (34%), Positives = 57/106 (53%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L   L  +GFEV     G       +   PDL+++D  LP + G E  R+L+  PE ++
Sbjct: 17  LLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSGIELCRRLRQRPETER 76

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P+I LTA    S+R + +A G DDY  KP   P L++++  +L R
Sbjct: 77  LPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122



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>COPR_PSESM (Q02540) Transcriptional activator protein copR|
          Length = 227

 Score = 72.8 bits (177), Expect = 8e-13
 Identities = 41/105 (39%), Positives = 55/105 (52%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L + L   GF V     G   VD A  E  DL+++D+ +P +DGWE  R+L+     Q  
Sbjct: 16  LQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGWEVIRRLRTAG--QPV 73

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           PV+ LTA     DR K +  G DDY  KP  L  LL+++  LL R
Sbjct: 74  PVLFLTARDGVDDRVKGLELGADDYLVKPFALSELLARVRTLLRR 118



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>IRLR_BURPS (O31395) Transcriptional activator protein irlR|
          Length = 229

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 38/105 (36%), Positives = 54/105 (51%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L + LT  GF      DG  G+  A  E+ DLI++D+ LP  DGW    +L+       T
Sbjct: 16  LRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGWTVLERLR---RAHST 72

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           PV+ LTA     DR K +  G DDY  KP +   L++++  +L R
Sbjct: 73  PVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRR 117



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>YYCF_BACSU (P37478) Transcriptional regulatory protein yycF|
          Length = 235

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 40/106 (37%), Positives = 58/106 (54%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L   L ++G+EV  AHDG   V+     QPDLIL+D+ LP  DG E  R+++   ++  
Sbjct: 17  ILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDM-- 74

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P+I LTA     D+   +  G DDY TKP     LL+++   L R
Sbjct: 75  -PIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119



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>PRRA_MYCLE (Q50136) Transcriptional regulatory protein prrA|
          Length = 233

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 40/105 (38%), Positives = 56/105 (53%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L R L   GFEV  A DGA  +  A   +PD I++D+++PV+DG      L+A       
Sbjct: 23  LERGLRLSGFEVSTAIDGAEALRNATETRPDAIVLDINMPVLDGVSVVTALRAMD--NDV 80

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           PV  L+A +   DR   + AG DDY  KP  L  L++++  LL R
Sbjct: 81  PVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125



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>CZCR_RALME (Q44006) Transcriptional activator protein czcR|
          Length = 225

 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 37/105 (35%), Positives = 58/105 (55%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L + L+  GF V +A++G  G+  A     D+I++D+ LP MDGW   + +++  E   T
Sbjct: 16  LQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGWTVIKSIRSKSE---T 72

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           PV+ LTA    +DR +    G DDY  KP     LL++I + L +
Sbjct: 73  PVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQ 117



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>YCF27_PORAE (P28835) Probable transcriptional regulator ycf27 (OmpR-like|
           protein)
          Length = 240

 Score = 69.3 bits (168), Expect = 9e-12
 Identities = 35/106 (33%), Positives = 62/106 (58%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L  RL+  G++V+ A DG   +   +RE P+L+++D+ +P +DG+   ++L+ + ++  
Sbjct: 18  ILETRLSIIGYDVISAADGEEALSIFKREHPNLVVLDLMMPKLDGYGVCQELRKESDV-- 75

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P+I LTA +  SDR   +  G DDY  KP     L ++I  +L R
Sbjct: 76  -PIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRR 120



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>YKOG_BACSU (O34903) Hypothetical sensory transduction protein ykoG|
          Length = 228

 Score = 69.3 bits (168), Expect = 9e-12
 Identities = 38/106 (35%), Positives = 57/106 (53%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L   L  +G+ V + H+G  G+D A      L+L+D+ LP + G E  R+L+      Q
Sbjct: 18  VLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLEVLRRLRKTDS--Q 75

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           TPVI LTA     D+   +  G +DY TKP E+  LL++I   L +
Sbjct: 76  TPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQ 121



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>ARLR_STAAN (Q99U73) Response regulator arlR|
          Length = 214

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 36/105 (34%), Positives = 59/105 (56%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L   LT + + V   +DG  G+D A     DLI++D+ LP ++G E  R+++   + Q T
Sbjct: 17  LELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEICRKIR---QQQST 73

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           P+I +TA +   D+   +  G DDY  KP ++  LL++I  +L R
Sbjct: 74  PIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR 118



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>ARLR_STAAW (P0C001) Response regulator arlR|
          Length = 219

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 36/105 (34%), Positives = 59/105 (56%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L   LT + + V   +DG  G+D A     DLI++D+ LP ++G E  R+++   + Q T
Sbjct: 17  LELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEICRKIR---QQQST 73

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           P+I +TA +   D+   +  G DDY  KP ++  LL++I  +L R
Sbjct: 74  PIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR 118



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>ARLR_STAAU (Q9KJN4) Response regulator arlR|
          Length = 219

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 36/105 (34%), Positives = 59/105 (56%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L   LT + + V   +DG  G+D A     DLI++D+ LP ++G E  R+++   + Q T
Sbjct: 17  LELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEICRKIR---QQQST 73

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           P+I +TA +   D+   +  G DDY  KP ++  LL++I  +L R
Sbjct: 74  PIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR 118



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>ARLR_STAAS (Q6G9E6) Response regulator arlR|
          Length = 219

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 36/105 (34%), Positives = 59/105 (56%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L   LT + + V   +DG  G+D A     DLI++D+ LP ++G E  R+++   + Q T
Sbjct: 17  LELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEICRKIR---QQQST 73

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           P+I +TA +   D+   +  G DDY  KP ++  LL++I  +L R
Sbjct: 74  PIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR 118



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>ARLR_STAAR (Q6GGZ3) Response regulator arlR|
          Length = 219

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 36/105 (34%), Positives = 59/105 (56%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L   LT + + V   +DG  G+D A     DLI++D+ LP ++G E  R+++   + Q T
Sbjct: 17  LELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEICRKIR---QQQST 73

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           P+I +TA +   D+   +  G DDY  KP ++  LL++I  +L R
Sbjct: 74  PIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR 118



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>ARLR_STAAM (P0C000) Response regulator arlR|
          Length = 219

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 36/105 (34%), Positives = 59/105 (56%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L   LT + + V   +DG  G+D A     DLI++D+ LP ++G E  R+++   + Q T
Sbjct: 17  LELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEICRKIR---QQQST 73

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           P+I +TA +   D+   +  G DDY  KP ++  LL++I  +L R
Sbjct: 74  PIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR 118



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>ARLR_STAAC (Q5HG04) Response regulator arlR|
          Length = 219

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 36/105 (34%), Positives = 59/105 (56%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L   LT + + V   +DG  G+D A     DLI++D+ LP ++G E  R+++   + Q T
Sbjct: 17  LELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEICRKIR---QQQST 73

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           P+I +TA +   D+   +  G DDY  KP ++  LL++I  +L R
Sbjct: 74  PIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR 118



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>PHOP_BACSU (P13792) Alkaline phosphatase synthesis transcriptional regulatory|
           protein phoP
          Length = 240

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 36/106 (33%), Positives = 58/106 (54%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L   L R G++V+ A DG   +  A  E+PDLI++D+ LP +DG E  +QL+   +   
Sbjct: 17  LLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLR--QQKLM 74

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P++ LTA     D+   +  G DDY TKP     + +++  +L R
Sbjct: 75  FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120



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>PCOR_ECOLI (Q47456) Transcriptional regulatory protein pcoR|
          Length = 226

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 35/105 (33%), Positives = 58/105 (55%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L + L  +G++  L ++G  G+  A + Q DLI++D+ LP +DGW+    L+      + 
Sbjct: 17  LQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQIISALRESG--HEE 74

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           PV+ LTA     D+ K +  G DDY  KP +   L++++  LL R
Sbjct: 75  PVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRR 119



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>YCF27_CYAPA (P48259) Probable transcriptional regulator ycf27 (OmpR-like|
           protein)
          Length = 239

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 36/106 (33%), Positives = 60/106 (56%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L  RL+  G+EVV A DG   +   + E P+L+++D+ +P +DG+   ++L+ + ++  
Sbjct: 20  ILETRLSMIGYEVVTAADGEEALTIFQLEHPNLVVLDVMMPKLDGYGVCQELRKESDI-- 77

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P+I LTA    +DR   +  G DDY  KP     L ++I  LL R
Sbjct: 78  -PIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRR 122



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>CUSR_ECOLI (P0ACZ8) Transcriptional regulatory protein cusR|
          Length = 227

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 38/105 (36%), Positives = 56/105 (53%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L++ LT  GF V LA +G  G   A     DLI++D+ LP ++GW+  R L++    +  
Sbjct: 16  LTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRS--ANKGM 73

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           P++ LTA      R K +  G DDY  KP     LL+++  LL R
Sbjct: 74  PILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118



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>CUSR_ECOL6 (P0ACZ9) Transcriptional regulatory protein cusR|
          Length = 227

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 38/105 (36%), Positives = 56/105 (53%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L++ LT  GF V LA +G  G   A     DLI++D+ LP ++GW+  R L++    +  
Sbjct: 16  LTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRS--ANKGM 73

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           P++ LTA      R K +  G DDY  KP     LL+++  LL R
Sbjct: 74  PILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118



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>CUSR_ECO57 (P0AD00) Transcriptional regulatory protein cusR|
          Length = 227

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 38/105 (36%), Positives = 56/105 (53%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L++ LT  GF V LA +G  G   A     DLI++D+ LP ++GW+  R L++    +  
Sbjct: 16  LTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRS--ANKGM 73

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           P++ LTA      R K +  G DDY  KP     LL+++  LL R
Sbjct: 74  PILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118



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>PFER_PSEAE (Q04803) Transcriptional activator protein pfeR|
          Length = 305

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 38/105 (36%), Positives = 54/105 (51%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L     R+GF V +  DG+ G++ A RE  DL+L+D+ LP +DG      L+ +   Q T
Sbjct: 93  LDAHFRRRGFRVTVCGDGSHGLEAAGREAFDLVLLDIMLPGLDGLALLESLRRE---QAT 149

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           PV+ ++A     DR      G DDY  KP  L  L ++   LL R
Sbjct: 150 PVMLMSALGAEQDRISGFTRGADDYLPKPFSLAELDARTDALLRR 194



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>YCF27_GUITH (O78428) Probable transcriptional regulator ycf27 (OmpR-like|
           protein)
          Length = 254

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 34/106 (32%), Positives = 60/106 (56%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L  RL+  G+ VV A DG   ++   +E PD++++D+ +P +DG+   ++++ D ++  
Sbjct: 29  ILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYGVCQEIRKDSDV-- 86

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P+I LTA    +DR   +  G DDY  KP     L ++I  +L R
Sbjct: 87  -PIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRR 131



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>SILR_SALTY (Q9ZHD3) Probable transcriptional regulatory protein silR|
          Length = 228

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 38/105 (36%), Positives = 56/105 (53%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           LS+ LT  GF V  A +G  G   A   + DL+++D+ LP ++GW+  R L++    +  
Sbjct: 16  LSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWDIIRMLRSAG--KGM 73

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           PV+ LTA      R K +  G DDY  KP     LL+++  LL R
Sbjct: 74  PVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118



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>YCF27_PORPU (P51358) Probable transcriptional regulator ycf27 (OmpR-like|
           protein)
          Length = 243

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 35/106 (33%), Positives = 59/106 (55%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L  RLT  G+EV+ A +G   +   R+E P L+++D+ +P +DG+   ++L+ + ++  
Sbjct: 20  ILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYGVCQELRKESDV-- 77

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P+I LTA     DR   +  G DDY  KP     L ++I  +L R
Sbjct: 78  -PIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122



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>YCF29_PORPU (P51343) Probable transcriptional regulator ycf29|
          Length = 209

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 37/101 (36%), Positives = 56/101 (55%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           L  +GF V +A +G      A + + DLI+ D+ +P++DG+E   +L+   +L + PVI 
Sbjct: 22  LIDQGFNVDIALNGLEAFQLANKYKFDLIISDIIMPIIDGYELLEKLRKIDKLAKIPVIF 81

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           LTA  M  DR K    GC  Y +KP +   L+S I  L+ R
Sbjct: 82  LTAKGMTKDRIKGYNMGCYGYLSKPFDPEELVSLIKNLIYR 122



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>YXDJ_BACSU (P42421) Sensory transduction protein yxdJ|
          Length = 229

 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 36/106 (33%), Positives = 61/106 (57%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L   L + G++ V+A D  A +D   RE+PD++L+D++LP  DG+   RQ++   +   
Sbjct: 16  LLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIR---QHST 72

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           +P+I ++A +   D+  AI  G DDY  KP     +L+KI   + R
Sbjct: 73  SPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRR 118



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>AFSQ1_STRCO (Q04942) Transcriptional regulatory protein afsQ1|
          Length = 225

 Score = 65.9 bits (159), Expect = 1e-10
 Identities = 38/105 (36%), Positives = 58/105 (55%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L   LTR+G  V  A  G  G+   R ++PDLI++D+ LP +DG+E  R+++      Q 
Sbjct: 17  LELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEVCRRIR---RTDQL 73

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           P+I LTA     D    + +G DDY  KP++   L ++I  +L R
Sbjct: 74  PIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118



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>YEDW_ECOLI (P76340) Probable transcriptional regulatory protein yedW|
          Length = 223

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           +++ L+  G+ +    DG  G+  A ++   LI++D+ LP MDGW+  + L+     +QT
Sbjct: 16  VTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRT---AKQT 72

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI-AQL 239
           PVI LTA     DR + + +G +DY  KP     LL+++ AQL
Sbjct: 73  PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQL 115



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>CPXR_SHIFL (P0AE90) Transcriptional regulatory protein cpxR|
          Length = 232

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 42/112 (37%), Positives = 60/112 (53%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L   L  +GF V++AHDG   +D    +  DL+L+D+ +P  +G +    LKA  +  Q
Sbjct: 16  LLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT---LKALRQTHQ 71

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 212
           TPVI LTA     DR   +  G DDY  KP     L+++I  +L R SH  E
Sbjct: 72  TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR-SHWSE 122



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>CPXR_ECOLI (P0AE88) Transcriptional regulatory protein cpxR|
          Length = 232

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 42/112 (37%), Positives = 60/112 (53%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L   L  +GF V++AHDG   +D    +  DL+L+D+ +P  +G +    LKA  +  Q
Sbjct: 16  LLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT---LKALRQTHQ 71

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 212
           TPVI LTA     DR   +  G DDY  KP     L+++I  +L R SH  E
Sbjct: 72  TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR-SHWSE 122



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>CPXR_ECO57 (P0AE89) Transcriptional regulatory protein cpxR|
          Length = 232

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 42/112 (37%), Positives = 60/112 (53%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L   L  +GF V++AHDG   +D    +  DL+L+D+ +P  +G +    LKA  +  Q
Sbjct: 16  LLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT---LKALRQTHQ 71

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 212
           TPVI LTA     DR   +  G DDY  KP     L+++I  +L R SH  E
Sbjct: 72  TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR-SHWSE 122



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>TCTD_SALTY (P22104) Transcriptional regulatory protein tctD|
          Length = 224

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 38/105 (36%), Positives = 55/105 (52%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L + L + GF V    DG A       E   L ++D+++P MDG E  ++L+     Q  
Sbjct: 16  LEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGLEVVQRLRKRG--QTL 73

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           PV+ LTA +  +DR K +  G DDY  KP EL  L +++  LL R
Sbjct: 74  PVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRR 118



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>PHOB_SHIFL (P45607) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 229

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 35/101 (34%), Positives = 52/101 (51%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           L + GF+ V A D  + V+      PDLIL+D  LP   G +  + LK +   +  PV+ 
Sbjct: 22  LEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVM 81

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           LTA     DR + +  G DDY TKP     L+++I  ++ R
Sbjct: 82  LTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122



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>PHOB_SHIDY (P45606) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 229

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 35/101 (34%), Positives = 52/101 (51%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           L + GF+ V A D  + V+      PDLIL+D  LP   G +  + LK +   +  PV+ 
Sbjct: 22  LEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVM 81

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           LTA     DR + +  G DDY TKP     L+++I  ++ R
Sbjct: 82  LTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122



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>PHOB_ECOLI (P0AFJ5) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 229

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 35/101 (34%), Positives = 52/101 (51%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           L + GF+ V A D  + V+      PDLIL+D  LP   G +  + LK +   +  PV+ 
Sbjct: 22  LEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVM 81

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           LTA     DR + +  G DDY TKP     L+++I  ++ R
Sbjct: 82  LTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122



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>PHOB_ECO57 (P0AFJ6) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 229

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 35/101 (34%), Positives = 52/101 (51%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           L + GF+ V A D  + V+      PDLIL+D  LP   G +  + LK +   +  PV+ 
Sbjct: 22  LEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVM 81

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           LTA     DR + +  G DDY TKP     L+++I  ++ R
Sbjct: 82  LTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122



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>PHOB_KLEPN (P45605) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 229

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 35/101 (34%), Positives = 52/101 (51%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           L + GF+ V A D  + V+      PDLIL+D  LP   G +  + LK +   +  PV+ 
Sbjct: 22  LEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQFIKLLKREAMTRDIPVVM 81

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           LTA     DR + +  G DDY TKP     L+++I  ++ R
Sbjct: 82  LTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122



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>YCLJ_BACSU (P94413) Hypothetical sensory transduction protein yclJ|
          Length = 227

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 36/99 (36%), Positives = 51/99 (51%)
 Frame = -1

Query: 526 RKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALT 347
           ++GFE    HDG  G      E  DLI++D+ LP MDG    R+++   E    P+I LT
Sbjct: 22  KEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVTICRKIR---ETSTVPIIMLT 78

Query: 346 AHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           A    SD+      G DDY TKP     L+++I  ++ R
Sbjct: 79  AKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRR 117



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>YSO1_PLEBO (P51586) Hypothetical 14.6 kDa protein in sodA1 3'region (ORF131)|
          Length = 131

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 34/102 (33%), Positives = 59/102 (57%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L   L  +G  V +A +    +    RE P L++ D+++P MDG+E   +++  P+ + 
Sbjct: 21  LLRFMLEDEGAIVTVAPNAKEALSLLERELPKLLVSDVAMPEMDGFELIGRVRELPKGET 80

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 242
            P IALTA+A   DR+ A+ +G +DY TKP++   L+  + Q
Sbjct: 81  LPAIALTAYAREEDRQAALRSGFNDYLTKPVDPLELIRLVQQ 122



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>YCF27_GALSU (P28257) Probable transcriptional regulator ycf27 (OmpR-like|
           protein)
          Length = 255

 Score = 63.9 bits (154), Expect = 4e-10
 Identities = 33/106 (31%), Positives = 61/106 (57%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L  RL+  G+EV+ A DG + +    +E P+L+++D+ +P +DG+   ++++ + ++  
Sbjct: 22  ILETRLSIIGYEVLTAPDGRSALFLFHKEHPNLVVLDVMMPKIDGYGVCQEIRKESDI-- 79

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P+I LTA    +DR   +  G DDY  KP     L ++I  +L R
Sbjct: 80  -PIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRR 124



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>REGX3_MYCTU (Q11156) Sensory transduction protein regX3|
          Length = 227

 Score = 63.5 bits (153), Expect = 5e-10
 Identities = 35/101 (34%), Positives = 53/101 (52%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           L ++GFE  +  DG A +    R   D++L+D+ LP M G +  +QL+A       PVI 
Sbjct: 21  LRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRA---RSSVPVIM 77

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           +TA     D+   +  G DDY TKP     L+++I  +L R
Sbjct: 78  VTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118



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>REGX3_MYCBO (O07130) Sensory transduction protein regX3|
          Length = 227

 Score = 63.5 bits (153), Expect = 5e-10
 Identities = 35/101 (34%), Positives = 53/101 (52%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           L ++GFE  +  DG A +    R   D++L+D+ LP M G +  +QL+A       PVI 
Sbjct: 21  LRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRA---RSSVPVIM 77

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           +TA     D+   +  G DDY TKP     L+++I  +L R
Sbjct: 78  VTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118



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>REGX3_MYCSM (Q9F868) Sensory transduction protein regX3|
          Length = 228

 Score = 63.5 bits (153), Expect = 5e-10
 Identities = 34/101 (33%), Positives = 53/101 (52%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           L ++GFE  +  DG + +    R   D++L+D+ LP M G +  +QL+A       PVI 
Sbjct: 21  LRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDVCKQLRA---RSSVPVIM 77

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           +TA     D+   +  G DDY TKP     L+++I  +L R
Sbjct: 78  VTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118



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>CYAB_STIAU (P40138) Adenylate cyclase 2 (EC 4.6.1.1) (ATP pyrophosphate-lyase|
           2) (Adenylyl cyclase 2) (AC2)
          Length = 352

 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 33/97 (34%), Positives = 54/97 (55%)
 Frame = -1

Query: 520 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAH 341
           G+EV+   D    ++   + QP ++L D+ +P +DG E   +LK  P  +Q PVI LTA+
Sbjct: 31  GYEVMCFQDPYEALEQVGKVQPAIVLSDLDMPGIDGLELCWRLKESPS-RQVPVIILTAN 89

Query: 340 AMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
              ++R K + AG DDY  K   +  L ++I  ++ R
Sbjct: 90  DSEAERVKGLRAGADDYVNKSASMAELSARIESVMRR 126



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>MTRA_MYCTU (P0A5Z4) DNA-binding response regulator mtrA|
          Length = 225

 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 35/106 (33%), Positives = 56/106 (52%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           ML+  L  +GF+  +  DG   +   R  +PDL+L+D+ LP M+G +  R L+AD     
Sbjct: 17  MLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRAD---SG 73

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P++ LTA     D    + +G DDY  KP +   L++++   L R
Sbjct: 74  VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 119



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>MTRA_MYCPA (Q93CB8) DNA-binding response regulator mtrA|
          Length = 225

 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 35/106 (33%), Positives = 56/106 (52%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           ML+  L  +GF+  +  DG   +   R  +PDL+L+D+ LP M+G +  R L+AD     
Sbjct: 17  MLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRAD---SG 73

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P++ LTA     D    + +G DDY  KP +   L++++   L R
Sbjct: 74  VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 119



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>MTRA_MYCLE (Q9CCJ2) DNA-binding response regulator mtrA|
          Length = 225

 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 35/106 (33%), Positives = 56/106 (52%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           ML+  L  +GF+  +  DG   +   R  +PDL+L+D+ LP M+G +  R L+AD     
Sbjct: 17  MLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRAD---SG 73

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P++ LTA     D    + +G DDY  KP +   L++++   L R
Sbjct: 74  VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 119



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>MTRA_MYCBO (P0A5Z5) DNA-binding response regulator mtrA|
          Length = 225

 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 35/106 (33%), Positives = 56/106 (52%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           ML+  L  +GF+  +  DG   +   R  +PDL+L+D+ LP M+G +  R L+AD     
Sbjct: 17  MLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRAD---SG 73

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P++ LTA     D    + +G DDY  KP +   L++++   L R
Sbjct: 74  VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 119



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>EVGS_ECOLI (P30855) Sensor protein evgS precursor (EC 2.7.13.3)|
          Length = 1197

 Score = 62.8 bits (151), Expect = 8e-10
 Identities = 35/103 (33%), Positives = 61/103 (59%)
 Frame = -1

Query: 547  MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
            +L R+L   G++V  A DG   +     +  DL++ D+++P MDG+E TR+L+   +   
Sbjct: 973  LLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLR--EQNSS 1030

Query: 367  TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239
             P+  LTA+A A++REK ++ G +    KP+ L  L + ++QL
Sbjct: 1031 LPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQL 1073



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>YFHA_ECOLI (P0AFU4) Hypothetical protein yfhA (ORF-2)|
          Length = 444

 Score = 62.8 bits (151), Expect = 8e-10
 Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL-KADPELQ 371
           +L  RLT +G+ VV A  GA G+    RE+ DL++ D+ +  MDG +   ++ K  P + 
Sbjct: 20  LLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLFAEIQKVQPGM- 78

Query: 370 QTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
             PVI LTAH    D   A   G   + TKP++   L   I   LE+
Sbjct: 79  --PVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123



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>YFHA_ECO57 (P0AFU5) Hypothetical protein yfhA|
          Length = 444

 Score = 62.8 bits (151), Expect = 8e-10
 Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL-KADPELQ 371
           +L  RLT +G+ VV A  GA G+    RE+ DL++ D+ +  MDG +   ++ K  P + 
Sbjct: 20  LLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLFAEIQKVQPGM- 78

Query: 370 QTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
             PVI LTAH    D   A   G   + TKP++   L   I   LE+
Sbjct: 79  --PVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123



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>ATOC_ECOLI (Q06065) Acetoacetate metabolism regulatory protein atoC|
           (Ornithine/arginine decarboxylase inhibitor) (Ornithine
           decarboxylase antizyme)
          Length = 461

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 36/112 (32%), Positives = 61/112 (54%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           MLS     +GFE   A++G   +       PD++LMD+ +P MDG +A +++++     +
Sbjct: 19  MLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKALKEMRSHE--TR 76

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 212
           TPVI +TA+A      +A+  G  DY  KP +L  L   + + L+  S ++E
Sbjct: 77  TPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSMKKE 128



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>CREB_ECOLI (P08368) Transcriptional regulatory protein creB|
          Length = 229

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKA-DPELQQTPVI 356
           L ++GF V +   G   +D AR++ PD++++D+ LP + G+E  RQL A  P L   PV+
Sbjct: 23  LQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELCRQLLALHPAL---PVL 79

Query: 355 ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            LTA +   DR   +  G DDY  KP     + +++  LL R
Sbjct: 80  FLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121



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>QSEB_HAEIN (P45337) Transcriptional regulatory protein qseB|
          Length = 221

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 33/101 (32%), Positives = 54/101 (53%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           LT+ GF V    DG  G+        D +++D++LP +DG E  +Q +++   Q  PV+ 
Sbjct: 20  LTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEVLQQWRSNH--QDVPVLI 77

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           LTA     +R K + +G DDY  KP  L  + +++  L+ R
Sbjct: 78  LTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRR 118



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>SRRA_STAAW (Q7A0U4) Transcriptional regulatory protein srrA (Staphylococcal|
           respiratory response protein A)
          Length = 241

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 35/106 (33%), Positives = 55/106 (51%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L   L R+ FE+  A +G    + A       IL+D+ LP MDG +   +L+   E +Q
Sbjct: 17  LLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQVATKLR---EHKQ 73

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           TP+I LTA    ++R +   +G DDY  KP     ++ ++  LL R
Sbjct: 74  TPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119



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>SRRA_STAAU (Q9L524) Transcriptional regulatory protein srrA (Staphylococcal|
           respiratory response protein A)
          Length = 241

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 35/106 (33%), Positives = 55/106 (51%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L   L R+ FE+  A +G    + A       IL+D+ LP MDG +   +L+   E +Q
Sbjct: 17  LLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQVATKLR---EHKQ 73

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           TP+I LTA    ++R +   +G DDY  KP     ++ ++  LL R
Sbjct: 74  TPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119



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>SRRA_STAAS (Q6G972) Transcriptional regulatory protein srrA (Staphylococcal|
           respiratory response protein A)
          Length = 241

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 35/106 (33%), Positives = 55/106 (51%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L   L R+ FE+  A +G    + A       IL+D+ LP MDG +   +L+   E +Q
Sbjct: 17  LLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQVATKLR---EHKQ 73

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           TP+I LTA    ++R +   +G DDY  KP     ++ ++  LL R
Sbjct: 74  TPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119



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>SRRA_STAAR (Q6GGK6) Transcriptional regulatory protein srrA (Staphylococcal|
           respiratory response protein A)
          Length = 241

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 35/106 (33%), Positives = 55/106 (51%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L   L R+ FE+  A +G    + A       IL+D+ LP MDG +   +L+   E +Q
Sbjct: 17  LLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQVATKLR---EHKQ 73

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           TP+I LTA    ++R +   +G DDY  KP     ++ ++  LL R
Sbjct: 74  TPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119



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>SRRA_STAAN (Q7A5H6) Transcriptional regulatory protein srrA (Staphylococcal|
           respiratory response protein A)
          Length = 241

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 35/106 (33%), Positives = 55/106 (51%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L   L R+ FE+  A +G    + A       IL+D+ LP MDG +   +L+   E +Q
Sbjct: 17  LLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQVATKLR---EHKQ 73

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           TP+I LTA    ++R +   +G DDY  KP     ++ ++  LL R
Sbjct: 74  TPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119



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>SRRA_STAAM (Q7A2R6) Transcriptional regulatory protein srrA (Staphylococcal|
           respiratory response protein A)
          Length = 241

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 35/106 (33%), Positives = 55/106 (51%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L   L R+ FE+  A +G    + A       IL+D+ LP MDG +   +L+   E +Q
Sbjct: 17  LLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQVATKLR---EHKQ 73

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           TP+I LTA    ++R +   +G DDY  KP     ++ ++  LL R
Sbjct: 74  TPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119



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>SRRA_STAAC (Q5HFT0) Transcriptional regulatory protein srrA (Staphylococcal|
           respiratory response protein A)
          Length = 241

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 35/106 (33%), Positives = 55/106 (51%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L   L R+ FE+  A +G    + A       IL+D+ LP MDG +   +L+   E +Q
Sbjct: 17  LLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQVATKLR---EHKQ 73

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           TP+I LTA    ++R +   +G DDY  KP     ++ ++  LL R
Sbjct: 74  TPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119



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>CHVI_AGRTU (Q07783) Transcriptional regulatory protein chvI|
          Length = 241

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 37/109 (33%), Positives = 55/109 (50%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           +S  L R+G+ V    DGA+ VD      P L + D+ +P MDG E  R+L+   ++   
Sbjct: 17  VSIALEREGYRVETYTDGASAVDGLIARPPQLAIFDIKMPRMDGMELLRRLRQKSDI--- 73

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHR 218
           PVI LT+     D    +  G DD+ TKP     L+ ++  +L R S R
Sbjct: 74  PVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRASSR 122



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>EVGS_ECO57 (P58402) Sensor protein evgS precursor (EC 2.7.13.3)|
          Length = 1197

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 34/103 (33%), Positives = 60/103 (58%)
 Frame = -1

Query: 547  MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
            +L R+L   G++V  A DG   +     +  DL++ D+++P +DG+E TR+L+   +   
Sbjct: 973  LLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNVDGFELTRKLR--EQNSS 1030

Query: 367  TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239
             P+  LTA+A A++REK +  G +    KP+ L  L + ++QL
Sbjct: 1031 LPIWGLTANAQANEREKGLNCGMNLCLFKPLTLDVLKTHLSQL 1073



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>RCSC_SALTI (Q56128) Sensor protein rcsC (EC 2.7.13.3) (Capsular synthesis|
            regulator component C)
          Length = 948

 Score = 59.7 bits (143), Expect = 7e-09
 Identities = 31/107 (28%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
 Frame = -1

Query: 547  MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
            +L+ +L   G++   A+DG   ++   +   D++L D+++P MDG+  T++++   +L  
Sbjct: 839  LLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRLTQRIR---QLGL 895

Query: 367  T-PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            T PV+ +TA+A+A ++++ + +G D   +KP+ L  L   +A   ER
Sbjct: 896  TLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDALKQTLAVYAER 942



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>MCS4_SCHPO (P87323) Response regulator mcs4 (Mitotic catastrophe suppressor 4)|
          Length = 522

 Score = 59.7 bits (143), Expect = 7e-09
 Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 26/128 (20%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQ- 371
           +L   + ++     +A DG   ++  +++   LILMD+ LP M G E T++++    L  
Sbjct: 376 ILETFMKKRNISSEVAKDGLEALEKWKKKSFHLILMDIQLPTMSGIEVTQEIRRLERLNA 435

Query: 370 -----------------------QTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIELP 266
                                  Q+PVI  ALTA ++ +DR +A+AAGC+D+ TKP+ L 
Sbjct: 436 IGVGAPKLTQPIPEKDQLNENKFQSPVIIVALTASSLMADRNEALAAGCNDFLTKPVSLV 495

Query: 265 RLLSKIAQ 242
            L  KI +
Sbjct: 496 WLEKKITE 503



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>MAK1_SCHPO (Q9P7Q7) Peroxide stress-activated histidine kinase mak1 (EC|
            2.7.13.3) (Mcs4-associated kinase 1) (His-Asp
            phosphorelay kinase phk3)
          Length = 1639

 Score = 59.3 bits (142), Expect = 9e-09
 Identities = 38/110 (34%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
 Frame = -1

Query: 547  MLSRRLTRKGFEVVLAHDGAAGVDTARREQPD---LILMDMSLPVMDGWEA---TRQLKA 386
            ++SR L R G +  +  DG   V+  +RE+P+   LILMD+ +PVMDG++A    R+ + 
Sbjct: 1520 VISRYLERIGVKFKVTMDGLQCVEEWKREKPNFYSLILMDLQMPVMDGYQACNEIRKYEL 1579

Query: 385  DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236
            + +  + P++AL+A+A+         +G D Y  KPI L  L   I+ +L
Sbjct: 1580 ENDYPKVPIVALSANALPHVVLSCKDSGFDSYLAKPITLQHLSLIISGIL 1629



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>DLTR_STRA5 (P0A4I0) Transcriptional regulatory protein dltR|
          Length = 224

 Score = 59.3 bits (142), Expect = 9e-09
 Identities = 34/95 (35%), Positives = 51/95 (53%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           L  KG+ V LA DG  G++       DL+L+D+ LP   G    ++++      +TP+I 
Sbjct: 20  LADKGYSVDLAFDGDDGLEYILTGLYDLVLLDIMLPKRSGLSVLKRVREAG--LETPIIF 77

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248
           LTA +   D+   +  G DDY TKP E   LL++I
Sbjct: 78  LTAKSQTYDKVNGLDLGADDYITKPFEADELLARI 112



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>DLTR_STRA3 (P0A4H9) Transcriptional regulatory protein dltR|
          Length = 224

 Score = 59.3 bits (142), Expect = 9e-09
 Identities = 34/95 (35%), Positives = 51/95 (53%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           L  KG+ V LA DG  G++       DL+L+D+ LP   G    ++++      +TP+I 
Sbjct: 20  LADKGYSVDLAFDGDDGLEYILTGLYDLVLLDIMLPKRSGLSVLKRVREAG--LETPIIF 77

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248
           LTA +   D+   +  G DDY TKP E   LL++I
Sbjct: 78  LTAKSQTYDKVNGLDLGADDYITKPFEADELLARI 112



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>RCSC_SALTY (P58662) Sensor protein rcsC (EC 2.7.13.3) (Capsular synthesis|
            regulator component C)
          Length = 948

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 31/107 (28%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
 Frame = -1

Query: 547  MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
            +L+ +L   G++   A+DG   ++   +   D++L D+++P MDG+  T++++   +L  
Sbjct: 839  LLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRLTQRIR---QLGL 895

Query: 367  T-PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            T PV+ +TA+A+A ++++ + +G D   +KP+ L  L   +A   ER
Sbjct: 896  TLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDVLKQTLAVYAER 942



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>YRKP_BACSU (P54443) Hypothetical sensory transduction protein yrkP|
          Length = 231

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 32/106 (30%), Positives = 56/106 (52%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L   LTR G+EV+ A DG   +     +  DL+++D+ +P + G E  + ++    +  
Sbjct: 17  LLEESLTRAGYEVLRAKDGKRALQLVN-DSLDLVILDIMMPGISGIETCQHIRKSSNV-- 73

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P++ LTA +   D+ + + AG DDY TKP     L +++   L R
Sbjct: 74  -PILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRR 118



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>PHOB_PSEAE (P23620) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 229

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 34/106 (32%), Positives = 52/106 (49%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           M++  L   G+E + A +           +PDLIL+D  LP   G E  R+LK D     
Sbjct: 18  MIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGIELARRLKRDELTVD 77

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P+I LTA     ++ + +  G DDY TKP     L++++  +L R
Sbjct: 78  IPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123



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>RESD_BACSU (P35163) Transcriptional regulatory protein resD|
          Length = 240

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 34/106 (32%), Positives = 54/106 (50%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L   L R+ + +  A +G   +        DLIL+D+ +P  DG E  RQ++   E + 
Sbjct: 21  LLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIEVCRQIR---EKKA 77

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           TP+I LTA    ++R +   AG DDY  KP     ++ ++  LL R
Sbjct: 78  TPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123



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>CHEY_BACSU (P24072) Chemotaxis protein cheY homolog|
          Length = 119

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQ 371
           M+   L + GFEVV  A +GA  V+  +   PDL+ MD+++P MDG  A +++K      
Sbjct: 16  MIKDILVKNGFEVVAEAENGAQAVEKYKEHSPDLVTMDITMPEMDGITALKEIKQID--A 73

Query: 370 QTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236
           Q  +I  +A    S    AI AG  D+  KP +  R+L  I + L
Sbjct: 74  QARIIMCSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTL 118



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>TCSA_EMENI (Q9P896) Two-component system protein A (EC 2.7.13.3)|
          Length = 719

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
 Frame = -1

Query: 502 AHDGAAGVDTARRE--QPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMAS 329
           A +GA  V   R++    D+ILMD+S+PV+DG  AT Q++ D  L   P+IA+T +AM  
Sbjct: 590 AWNGAEAVRMVRQKPLSYDIILMDVSMPVLDGLAATEQIR-DMGLTM-PIIAITGNAMKG 647

Query: 328 DREKAIAAGCDDYDTKPIELPRLL 257
           D E  IA G DD   KP+   +LL
Sbjct: 648 DAETYIAQGMDDCICKPVHRDQLL 671



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>CTRA_CAUCR (Q45994) Cell cycle transcriptional regulator ctrA (Response|
           regulator sokA)
          Length = 231

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 33/101 (32%), Positives = 51/101 (50%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           L  +GF V     G  GVD  +    DLIL+D++LP M G +  R L+       TP++ 
Sbjct: 20  LKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLNLPDMSGIDVLRTLRV--AKINTPIMI 77

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           L+  +    + K  A G DDY TKP     ++++I  ++ R
Sbjct: 78  LSGSSEIDTKVKTFAGGADDYMTKPFHKDEMIARIHAVVRR 118



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>RPRY_BACFR (Q9AE24) Transcriptional regulatory protein rprY|
          Length = 236

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 33/106 (31%), Positives = 52/106 (49%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L   L  KG+   L  DG AG     + + DL + D+ +P  DG+   ++++A     +
Sbjct: 22  LLREYLQAKGYSAELYPDGEAGFKAFLKNKYDLCVFDVMMPKKDGFTLAQEVRAANA--E 79

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P+I LTA  +  D  +    G DDY TKP  +  L  +I  +L R
Sbjct: 80  IPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAILRR 125



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>KDPE_ECOLI (P21866) KDP operon transcriptional regulatory protein kdpE|
          Length = 225

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 39/112 (34%), Positives = 55/112 (49%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L   L   G  V  A     G+  A   +PDLI++D+ LP  DG E  R L+   +    
Sbjct: 17  LRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLR---QWSAV 73

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRREP 209
           PVI L+A +  SD+  A+ AG DDY +KP  +  L +++   L R S    P
Sbjct: 74  PVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTAP 125



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>YCBL_BACSU (P42244) Hypothetical sensory transduction protein ycbL|
          Length = 226

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 32/106 (30%), Positives = 55/106 (51%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           M+   LT++GF +V A DG  G+   ++   DL+L+D+ LP ++G +    LK   E   
Sbjct: 12  MVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDF---LKIIREKSN 68

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            PV+ ++A     D+   +  G DDY  KP  +  L +++   + R
Sbjct: 69  IPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRR 114



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>RCSC_ECOLI (P14376) Sensor kinase protein rcsC (EC 2.7.13.3) (Capsular synthesis|
            regulator component C)
          Length = 949

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 30/107 (28%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
 Frame = -1

Query: 547  MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
            +L+ +L   G++   A+DG   ++   +   D++L D+++P MDG+  T++++   +L  
Sbjct: 839  LLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIR---QLGL 895

Query: 367  T-PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            T PVI +TA+A+A ++++ + +G D   +KP+ L  +   +    ER
Sbjct: 896  TLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAER 942



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>TORR_ECOLI (P38684) TorCAD operon transcriptional regulatory protein torR|
          Length = 230

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 35/105 (33%), Positives = 55/105 (52%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L    T++G+ V +   GA   +  + +  DLIL+D++LP  +G   TR L+   E    
Sbjct: 18  LQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALR---ERSTV 74

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            +I +T  +   DR   +  G DDY TKP+EL  L+ ++  LL R
Sbjct: 75  GIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119



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>TORR_ECO57 (P58357) TorCAD operon transcriptional regulatory protein torR|
          Length = 230

 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 35/105 (33%), Positives = 55/105 (52%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L    T++G+ V +   GA   +  + +  DLIL+D++LP  +G   TR L+   E    
Sbjct: 18  LQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALR---ERSTV 74

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            +I +T  +   DR   +  G DDY TKP+EL  L+ ++  LL R
Sbjct: 75  GIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119



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>RCAC_FREDI (Q01473) Protein rcaC|
          Length = 651

 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 29/97 (29%), Positives = 55/97 (56%)
 Frame = -1

Query: 520 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAH 341
           GF+V    D        +   PD +++D+++P ++G+E  + L++DP  Q+ PV+ L+  
Sbjct: 549 GFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFELCQLLRSDPHWQRLPVLFLSVL 608

Query: 340 AMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
              + + +A A G DDY  KP++   L ++I + L+R
Sbjct: 609 TDPTTQNQAFAVGGDDYLCKPVKGVELANRILRRLQR 645



 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 35/115 (30%), Positives = 59/115 (51%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L++ LT   + V +  DG  G       + DLI++D+ LP +DG    ++ +A      
Sbjct: 15  VLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGISLCKRFRAQG--YT 72

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRREPWL 203
            P++ LTA    + + + + AG DDY  KP +   L+++I  LL R S+   P L
Sbjct: 73  VPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRGSNNPFPLL 127



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>CHVI_RHIME (P50350) Transcriptional regulatory protein chvI|
          Length = 240

 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 34/109 (31%), Positives = 56/109 (51%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           +S  L  +G++V    DGA+ ++      P L + D+ +P MDG E  R+L+   +L   
Sbjct: 17  VSIALEAEGYKVETYTDGASALEGLLARPPQLAIFDIKMPRMDGMELLRRLRQKSDL--- 73

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHR 218
           PVI LT+     D    +  G DD+ TKP     L+ ++  +L R ++R
Sbjct: 74  PVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRAANR 122



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>ARCB_SHIFL (P0AEC4) Aerobic respiration control sensor protein arcB (EC|
           2.7.13.3)
          Length = 778

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL-KADPELQQTPVI 356
           L + G  V +A  G A ++  +  + DL+L+D+ LP M G + +R+L K  P     P++
Sbjct: 545 LEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDISRELTKRYPREDLPPLV 604

Query: 355 ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248
           ALTA+ +  D+++ + AG DD  +KP+ +P L + I
Sbjct: 605 ALTANVL-KDKQEYLNAGMDDVLSKPLSVPALTAMI 639



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>ARCB_ECOLI (P0AEC3) Aerobic respiration control sensor protein arcB (EC|
           2.7.13.3)
          Length = 778

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL-KADPELQQTPVI 356
           L + G  V +A  G A ++  +  + DL+L+D+ LP M G + +R+L K  P     P++
Sbjct: 545 LEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDISRELTKRYPREDLPPLV 604

Query: 355 ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248
           ALTA+ +  D+++ + AG DD  +KP+ +P L + I
Sbjct: 605 ALTANVL-KDKQEYLNAGMDDVLSKPLSVPALTAMI 639



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>ARCB_ECO57 (P58363) Aerobic respiration control sensor protein arcB (EC|
           2.7.13.3)
          Length = 778

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL-KADPELQQTPVI 356
           L + G  V +A  G A ++  +  + DL+L+D+ LP M G + +R+L K  P     P++
Sbjct: 545 LEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDISRELTKRYPREDLPPLV 604

Query: 355 ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248
           ALTA+ +  D+++ + AG DD  +KP+ +P L + I
Sbjct: 605 ALTANVL-KDKQEYLNAGMDDVLSKPLSVPALTAMI 639



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>PHOB_HAEIN (P45189) Phosphate regulon transcriptional regulatory protein phoB|
          Length = 231

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 34/106 (32%), Positives = 54/106 (50%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           M++  L++K ++V+ A D    ++  + E P LIL+D  LP   G +  + +K       
Sbjct: 17  MIALFLSQKYYDVIEASDFKTAINKIK-ENPKLILLDWMLPGRSGIQFIQYIKKQESYAA 75

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P+I LTA +   D    + AG DDY TKP     LL++I  +  R
Sbjct: 76  IPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRR 121



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>CHEB_ARCFU (O29221) Chemotaxis response regulator protein-glutamate|
           methylesterase (EC 3.1.1.61)
          Length = 349

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
 Frame = -1

Query: 532 LTRKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVI 356
           LT+ G EVV  A +G   V+ A + +PD+I +D+++P MDG  A   LK   E Q TPV+
Sbjct: 20  LTKAGIEVVDTAKNGREAVEKALKLKPDVITLDINMPEMDGLTA---LKLIMEKQPTPVV 76

Query: 355 ALTAHAMASDRE--KAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            L++      RE  +A+  G  D+ TKP      LS +AQ L R
Sbjct: 77  MLSSLTKEGARETLEALKIGAVDFVTKPDGALVDLSSVAQELVR 120



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>YCF29_CYAPA (P48359) Probable transcriptional regulator ycf29|
          Length = 210

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 33/101 (32%), Positives = 49/101 (48%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           LT  GF V  +       D  +R++ DLI+ D+ +P M G+    QL+ + +    PVI 
Sbjct: 21  LTEIGFHVEESTCVDQAWDILKRKKIDLIICDIIMPGMGGFNFLHQLRLNTDYCTLPVIL 80

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           LT   +  DR      GCD Y +KP  +  L+  I  +L R
Sbjct: 81  LTTRGLTQDRIIGYKTGCDSYISKPFNIEELVVIIEGVLNR 121



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>CHEB_HALMA (Q5V0B3) Chemotaxis response regulator protein-glutamate|
           methylesterase (EC 3.1.1.61)
          Length = 369

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQ 371
           ++S  L+  G +VV  A DG   V      +PD++ MD+ +PVM+G EAT ++ A+    
Sbjct: 19  VISDILSDGGIDVVAQARDGEEAVSAVIEHRPDVVTMDVEMPVMNGIEATERIMAE---S 75

Query: 370 QTPVIALTAHA--MASDREKAIAAGCDDYDTKP-----IELPRLLSKIAQLL 236
            TPV+ L+AH    A    +A+  G  D+ TKP     +E+ RL  ++ +++
Sbjct: 76  PTPVLMLSAHTDENADVTFEALDKGAVDFFTKPGGEVSMEMSRLKDQLVEMV 127



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>YCF27_CYACA (Q9TLQ4) Probable transcriptional regulator ycf27 (OmpR-like|
           protein)
          Length = 249

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 31/106 (29%), Positives = 54/106 (50%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L  RLT  G+ V  A +G   +        DLI++D+ +P +DG+   ++++ + ++  
Sbjct: 26  ILQTRLTLLGYSVSTACNGEEALKIFTTHSIDLIILDVMMPKLDGYGVCQEIRKESDI-- 83

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P+I LTA     D+   +  G DDY  KP     L ++I  +L R
Sbjct: 84  -PIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELEARIQSILRR 128



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>CIAR_STRR6 (P0A4H8) Transcriptional regulatory protein ciaR|
          Length = 224

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 33/95 (34%), Positives = 49/95 (51%)
 Frame = -1

Query: 514 EVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAM 335
           +V+   DG  G+  A     DLIL+D+ LP  +G++  ++L+       TPV+ +TA   
Sbjct: 26  DVMQVFDGEEGLYEAESGVYDLILLDLMLPEKNGFQVLKELREKGIT--TPVLIMTAKES 83

Query: 334 ASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
             D+      G DDY TKP  L  L  +I  LL+R
Sbjct: 84  LDDKGHGFELGADDYLTKPFYLEELKMRIQALLKR 118



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>CIAR_STRPN (P0A4H7) Transcriptional regulatory protein ciaR|
          Length = 224

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 33/95 (34%), Positives = 49/95 (51%)
 Frame = -1

Query: 514 EVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAM 335
           +V+   DG  G+  A     DLIL+D+ LP  +G++  ++L+       TPV+ +TA   
Sbjct: 26  DVMQVFDGEEGLYEAESGVYDLILLDLMLPEKNGFQVLKELREKGIT--TPVLIMTAKES 83

Query: 334 ASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
             D+      G DDY TKP  L  L  +I  LL+R
Sbjct: 84  LDDKGHGFELGADDYLTKPFYLEELKMRIQALLKR 118



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>GTCR_ANEMI (Q44929) Response regulator gtcR|
          Length = 242

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 32/113 (28%), Positives = 59/113 (52%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L   L R+ + ++ A+DG    +  R+   DL ++D+ +P +DG++  ++L  + +L  
Sbjct: 17  LLKLFLERESYRIIEAYDGEQAWNYIRQHPVDLAIIDIMMPALDGFQLIKRLTNEYKL-- 74

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRREP 209
            PVI L+A    SD+   +  G DD+ +KP      +++I   L R     EP
Sbjct: 75  -PVIILSAKNRDSDKILGLGLGADDFISKPFNPLEAVARIQAQLRRAFEFNEP 126



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>SPHR_SYNP7 (P39663) Alkaline phosphatase synthesis transcriptional regulatory|
           protein sphR
          Length = 257

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARR---------EQPDLILMDMSLPVMDGWEATRQ 395
           M++  L ++GF V +A DG   ++  R          E PDL+++D+ LP ++G +  R 
Sbjct: 38  MVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDLMLPAVNGLDFCRL 97

Query: 394 LKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           L+        P++ L+A    +DR   +  G DDY TKP     L+++   LL R
Sbjct: 98  LRRQGVT--VPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARCRALLRR 150



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>SP0A_CLODI (P52938) Stage 0 sporulation protein A homolog|
          Length = 274

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 35/130 (26%), Positives = 60/130 (46%)
 Frame = -1

Query: 505 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASD 326
           +A DG   +D  ++ QPDL+++D+ +P +DG     +L      +   +I L+A      
Sbjct: 39  IAKDGIEALDLVKKTQPDLLILDVIMPHLDGLGVIEKLNTMDIPKMPKIIVLSAVGQDKI 98

Query: 325 REKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRREPWLPP*PSTAMKLRRQFLLFGV 146
            + AI  G D Y  KP +    +++I +L+     + EP   P P    ++ R   +  V
Sbjct: 99  TQSAINLGADYYIVKPFDFVVFINRIRELVSNRVTQVEP--KPRPVQETQMTRSDFVKNV 156

Query: 145 GTTFTAIAAI 116
           G   T I  I
Sbjct: 157 GNIETEITNI 166



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>DCTR_BACME (P39486) Probable C4-dicarboxylate response regulator dctR|
          Length = 228

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
 Frame = -1

Query: 523 KGFEVVLA-HDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALT 347
           +GF V+ A  +G  GV   ++ QPDL ++DM +P  DG    +Q++A+    +T VIA+T
Sbjct: 29  EGFTVIAAASNGLEGVQLIKQHQPDLTIIDMYMPSQDGLTTLQQIRANG--YKTDVIAVT 86

Query: 346 AHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 242
           A +      K +  G  DY  KP +  R+   + Q
Sbjct: 87  AASDIETVRKVLQYGAVDYIMKPFKFERMKQALEQ 121



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>FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7.13.3)|
          Length = 777

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 28/80 (35%), Positives = 42/80 (52%)
 Frame = -1

Query: 520 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAH 341
           G  V  A DG       +    DLIL D+ +P +DG+   R+LK+ P + + PVI L++ 
Sbjct: 682 GHSVEEAQDGEEAYVKVQNNTYDLILTDVQMPKLDGFSLARRLKSTPAVARIPVIILSSL 741

Query: 340 AMASDREKAIAAGCDDYDTK 281
           A   D+ + + AG D Y  K
Sbjct: 742 ASPEDKRRGLDAGADAYLVK 761



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>REGX3_MYCLE (P54884) Sensory transduction protein regX3|
          Length = 198

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 30/89 (33%), Positives = 46/89 (51%)
 Frame = -1

Query: 496 DGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREK 317
           DG A +    R   D++L+D+ LP M G +  +QL+    +   PVI +TA     D+  
Sbjct: 4   DGPAALAEFDRSGADIVLLDLMLPGMSGTDVYKQLRVRSSV---PVIMVTARDSEIDKVV 60

Query: 316 AIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            +  G DDY TKP     L+++I  +L R
Sbjct: 61  GLELGADDYVTKPYSARELIARIRAVLRR 89



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>QSEB_SALTY (P66795) Transcriptional regulatory protein qseB|
          Length = 219

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 30/101 (29%), Positives = 53/101 (52%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           L++ GF V    +G  G +       D +++D++LP MDG +  R+ +   +  Q PV+ 
Sbjct: 20  LSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGK--QEPVLI 77

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           LTA    ++R + +  G DDY  KP  L  + +++  L+ R
Sbjct: 78  LTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRR 118



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>QSEB_SALTI (P66796) Transcriptional regulatory protein qseB|
          Length = 219

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 30/101 (29%), Positives = 53/101 (52%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           L++ GF V    +G  G +       D +++D++LP MDG +  R+ +   +  Q PV+ 
Sbjct: 20  LSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGK--QEPVLI 77

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           LTA    ++R + +  G DDY  KP  L  + +++  L+ R
Sbjct: 78  LTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRR 118



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>SSK1_YEAST (Q07084) Osomolarity two-component system protein SSK1|
          Length = 712

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 37/114 (32%), Positives = 51/114 (44%), Gaps = 26/114 (22%)
 Frame = -1

Query: 505 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLK--------------------- 389
           LA +G   V+  +     LI MD+ LPV+ G EA +Q++                     
Sbjct: 532 LAKNGQEAVNIWKEGGLHLIFMDLQLPVLSGIEAAKQIRDFEKQNGIGIQKSLNNSHSNL 591

Query: 388 ---ADPELQQTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 242
                    Q PVI  ALTA     D+ KA+ +GC+DY TKP+ L  L  KI +
Sbjct: 592 EKGTSKRFSQAPVIIVALTASNSQMDKRKALLSGCNDYLTKPVNLHWLSKKITE 645



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>PHOP_SHIFL (Q83RR0) Virulence transcriptional regulatory protein phoP|
          Length = 223

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 39/171 (22%), Positives = 73/171 (42%)
 Frame = -1

Query: 520 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAH 341
           G +V  A D            PD+ ++D+ LP  DG    R+ +++      P++ LTA 
Sbjct: 24  GHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDV--SLPILVLTAR 81

Query: 340 AMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRREPWLPP*PSTAMKLRRQF 161
               D+ + ++AG DDY TKP  +  +++++  L+ R S      +   P      RR+ 
Sbjct: 82  ESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRREL 141

Query: 160 LLFGVGTTFTAIAAISLSDVITNTRLSESSREEVQSLLQEFDIKLIETVDL 8
            +       TA     +  +I N     S    +  L  + +++   T+D+
Sbjct: 142 SINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDV 192



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>PHOP_ECOL6 (Q8CXZ9) Transcriptional regulatory protein phoP|
          Length = 223

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 39/171 (22%), Positives = 73/171 (42%)
 Frame = -1

Query: 520 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAH 341
           G +V  A D            PD+ ++D+ LP  DG    R+ +++      P++ LTA 
Sbjct: 24  GHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDV--SLPILVLTAR 81

Query: 340 AMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRREPWLPP*PSTAMKLRRQF 161
               D+ + ++AG DDY TKP  +  +++++  L+ R S      +   P      RR+ 
Sbjct: 82  ESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRREL 141

Query: 160 LLFGVGTTFTAIAAISLSDVITNTRLSESSREEVQSLLQEFDIKLIETVDL 8
            +       TA     +  +I N     S    +  L  + +++   T+D+
Sbjct: 142 SINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDV 192



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>PILG_PSEAE (P46384) Protein pilG|
          Length = 135

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 29/95 (30%), Positives = 47/95 (49%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           L + G +V+ A DG   +       P++I +D+ +P +DG++    +K +   + TPVI 
Sbjct: 27  LKKVGCDVITAIDGFDALAKIADTHPNIIFVDIMMPRLDGYQTCALIKNNSAFKSTPVIM 86

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248
           L++     D+ K    G D Y TKP     LL  I
Sbjct: 87  LSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAI 121



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>QSEB_ECOLI (P52076) Transcriptional regulatory protein qseB|
          Length = 219

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 30/101 (29%), Positives = 52/101 (51%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           L++ GF V     G  G +       D +++D++LP MDG +  R+ +     Q+ PV+ 
Sbjct: 20  LSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKG--QREPVLI 77

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           LTA    ++R + +  G DDY  KP  L  + +++  L+ R
Sbjct: 78  LTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118



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>ZRAR_KLEOX (Q9APD9) Transcriptional regulatory protein zraR|
          Length = 443

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
 Frame = -1

Query: 520 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKA-DPELQQTPVIALTA 344
           G+ V LA++G   ++  R +  DL+L D+ +  MDG E  +++K  +P +   PV+ +TA
Sbjct: 29  GYRVALANNGLQALEKVREKVFDLVLCDIRMAEMDGIETLKEIKTFNPSI---PVLIMTA 85

Query: 343 HAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236
           ++      +A+ +G  DY  KP++  +L   +++ L
Sbjct: 86  YSSVDTAVEALKSGALDYLIKPLDFDKLQLTLSEAL 121



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>PHOP_ECOLI (P23836) Transcriptional regulatory protein phoP|
          Length = 223

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 35/150 (23%), Positives = 68/150 (45%)
 Frame = -1

Query: 457 PDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKP 278
           PD+ ++D+ LP  DG    R+ +++      P++ LTA     D+ + ++AG DDY TKP
Sbjct: 45  PDIAIVDLGLPDEDGLSLIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKP 102

Query: 277 IELPRLLSKIAQLLER*SHRREPWLPP*PSTAMKLRRQFLLFGVGTTFTAIAAISLSDVI 98
             +  +++++  L+ R S      +   P      RR+  +       TA     +  +I
Sbjct: 103 FHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLI 162

Query: 97  TNTRLSESSREEVQSLLQEFDIKLIETVDL 8
            N     S    +  L  + +++   T+D+
Sbjct: 163 RNNGKVVSKDSLMLQLYPDAELRESHTIDV 192



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>QSEB_ECO57 (Q8XBS3) Transcriptional regulatory protein qseB|
          Length = 219

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 30/101 (29%), Positives = 51/101 (50%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           L++ GF V     G  G +       D +++D++LP MDG +  R+ +     Q+ PV+ 
Sbjct: 20  LSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKG--QREPVLI 77

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           LTA     +R + +  G DDY  KP  L  + +++  L+ R
Sbjct: 78  LTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118



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>PETR_RHOCA (P31079) Protein petR|
          Length = 245

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAG--VDTARREQPDLILMDMSLPVMDGWEATRQLKADPEL 374
           +L + L R GF V    D A    + T    + +LI++D+ +P  DG   TR L+     
Sbjct: 21  LLQKFLIRNGFLVTAGRDAAHARRLFTLSGLEFNLIVLDVMMPGEDGLSLTRDLRTK--- 77

Query: 373 QQTPVIALTAHAMASDREKAIAAGCDDY--DTKPIELPRLLSKIAQLLER 230
             TP++ LTA     +R + + AG DDY    KP E   LL +I  +L R
Sbjct: 78  MATPILLLTARGETRERIEGLEAGADDYLFTPKPFEPKELLLRINAILRR 127



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>PHOP_SALTY (P14146) Virulence transcriptional regulatory protein phoP|
          Length = 224

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 41/179 (22%), Positives = 75/179 (41%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L  +L   G +V  A D            PD+ ++D+ LP  DG    R+ ++       
Sbjct: 17  LKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSSDV--SL 74

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRREPWLPP*PST 185
           PV+ LTA     D+ + +++G DDY TKP  +  +++++  L+ R S      +   P  
Sbjct: 75  PVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSGLASQVINIPPFQ 134

Query: 184 AMKLRRQFLLFGVGTTFTAIAAISLSDVITNTRLSESSREEVQSLLQEFDIKLIETVDL 8
               RR+  +       TA     +  +I N     S    +  L  + +++   T+D+
Sbjct: 135 VDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDV 193



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>PHOP_SALTI (Q8Z7H2) Virulence transcriptional regulatory protein phoP|
          Length = 224

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 41/179 (22%), Positives = 75/179 (41%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L  +L   G +V  A D            PD+ ++D+ LP  DG    R+ ++       
Sbjct: 17  LKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSSDV--SL 74

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRREPWLPP*PST 185
           PV+ LTA     D+ + +++G DDY TKP  +  +++++  L+ R S      +   P  
Sbjct: 75  PVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSGLASQVINISPFQ 134

Query: 184 AMKLRRQFLLFGVGTTFTAIAAISLSDVITNTRLSESSREEVQSLLQEFDIKLIETVDL 8
               RR+  +       TA     +  +I N     S    +  L  + +++   T+D+
Sbjct: 135 VDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDV 193



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>PHOP_SALPA (Q5PMJ1) Virulence transcriptional regulatory protein phoP|
          Length = 224

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 41/179 (22%), Positives = 75/179 (41%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L  +L   G +V  A D            PD+ ++D+ LP  DG    R+ ++       
Sbjct: 17  LKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSSDV--SL 74

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRREPWLPP*PST 185
           PV+ LTA     D+ + +++G DDY TKP  +  +++++  L+ R S      +   P  
Sbjct: 75  PVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSGLASQVINIPPFQ 134

Query: 184 AMKLRRQFLLFGVGTTFTAIAAISLSDVITNTRLSESSREEVQSLLQEFDIKLIETVDL 8
               RR+  +       TA     +  +I N     S    +  L  + +++   T+D+
Sbjct: 135 VDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDV 193



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>OMPR_SHIFL (P0AA21) Transcriptional regulatory protein ompR|
          Length = 239

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 34/106 (32%), Positives = 52/106 (49%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L R LT +GF+V    +         RE   L+++D+ LP  DG    R+L++  +   
Sbjct: 19  LLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRS--QSNP 76

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P+I +TA     DR   +  G DDY  KP     LL++I  +L R
Sbjct: 77  MPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122



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>OMPR_SALTY (P0AA19) Transcriptional regulatory protein ompR|
          Length = 239

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 34/106 (32%), Positives = 52/106 (49%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L R LT +GF+V    +         RE   L+++D+ LP  DG    R+L++  +   
Sbjct: 19  LLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRS--QSNP 76

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P+I +TA     DR   +  G DDY  KP     LL++I  +L R
Sbjct: 77  MPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122



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>OMPR_SALTI (P0AA20) Transcriptional regulatory protein ompR|
          Length = 239

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 34/106 (32%), Positives = 52/106 (49%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L R LT +GF+V    +         RE   L+++D+ LP  DG    R+L++  +   
Sbjct: 19  LLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRS--QSNP 76

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P+I +TA     DR   +  G DDY  KP     LL++I  +L R
Sbjct: 77  MPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122



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>OMPR_ECOLI (P0AA16) Transcriptional regulatory protein ompR|
          Length = 239

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 34/106 (32%), Positives = 52/106 (49%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L R LT +GF+V    +         RE   L+++D+ LP  DG    R+L++  +   
Sbjct: 19  LLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRS--QSNP 76

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P+I +TA     DR   +  G DDY  KP     LL++I  +L R
Sbjct: 77  MPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122



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>OMPR_ECOL6 (P0AA17) Transcriptional regulatory protein ompR|
          Length = 239

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 34/106 (32%), Positives = 52/106 (49%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L R LT +GF+V    +         RE   L+++D+ LP  DG    R+L++  +   
Sbjct: 19  LLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRS--QSNP 76

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P+I +TA     DR   +  G DDY  KP     LL++I  +L R
Sbjct: 77  MPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122



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>OMPR_ECO57 (P0AA18) Transcriptional regulatory protein ompR|
          Length = 239

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 34/106 (32%), Positives = 52/106 (49%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L R LT +GF+V    +         RE   L+++D+ LP  DG    R+L++  +   
Sbjct: 19  LLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRS--QSNP 76

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            P+I +TA     DR   +  G DDY  KP     LL++I  +L R
Sbjct: 77  MPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122



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>LUXO_VIBVY (Q7MM78) Regulatory protein luxO|
          Length = 453

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 28/87 (32%), Positives = 43/87 (49%)
 Frame = -1

Query: 520 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAH 341
           G ++ +   G   +D+ +   PDLIL+D+ LP M G +    +KA       P+I +TAH
Sbjct: 20  GIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKASH--PDVPIIFMTAH 77

Query: 340 AMASDREKAIAAGCDDYDTKPIELPRL 260
                  +A+  G  D+  KP E  RL
Sbjct: 78  GSIDTAVEAMRHGSQDFLIKPCEADRL 104



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>LUXO_VIBVU (Q8CWJ5) Regulatory protein luxO|
          Length = 453

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 28/87 (32%), Positives = 43/87 (49%)
 Frame = -1

Query: 520 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAH 341
           G ++ +   G   +D+ +   PDLIL+D+ LP M G +    +KA       P+I +TAH
Sbjct: 20  GIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKASH--PDVPIIFMTAH 77

Query: 340 AMASDREKAIAAGCDDYDTKPIELPRL 260
                  +A+  G  D+  KP E  RL
Sbjct: 78  GSIDTAVEAMRHGSQDFLIKPCEADRL 104



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>SKN7_YEAST (P38889) Transcription factor SKN7 (Peroxide sensitivity protein|
           POS9)
          Length = 622

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 35/117 (29%), Positives = 59/117 (50%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           + S+ L + G  V +  DG + + T  + + DL+LMD+ +P +DG  AT  +++     +
Sbjct: 391 LCSKFLRKYGCTVQVVSDGLSAISTLEKYRYDLVLMDIVMPNLDGATATSIVRSFD--NE 448

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRREPWLPP 197
           TP+IA+T + M  D    +  G +D   KP     L S + + L+      E  LPP
Sbjct: 449 TPIIAMTGNIMNQDLITYLQHGMNDILAKPFTRDDLHSILIRYLKDRIPLCEQQLPP 505



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>CUTR_STRLI (P0A4I2) Transcriptional regulatory protein cutR (Defective melC1|
           suppressor protein)
          Length = 217

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPEL-QQTPVI 356
           L R+   V + +DGAA ++       D++++D  LP++ G +  R++    EL   T V+
Sbjct: 20  LRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGDDVCRKIV---ELGMPTRVL 76

Query: 355 ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            LTA    SDR + +  G DDY  KP     L++++  L  R
Sbjct: 77  MLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRR 118



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>CUTR_STRCO (P0A4I1) Transcriptional regulatory protein cutR (Defective melC1|
           suppressor protein)
          Length = 217

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPEL-QQTPVI 356
           L R+   V + +DGAA ++       D++++D  LP++ G +  R++    EL   T V+
Sbjct: 20  LRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGDDVCRKIV---ELGMPTRVL 76

Query: 355 ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            LTA    SDR + +  G DDY  KP     L++++  L  R
Sbjct: 77  MLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRR 118



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>LUXQ_VIBVY (Q7MD16) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)|
           (EC 3.1.3.-)
          Length = 857

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 29/75 (38%), Positives = 44/75 (58%)
 Frame = -1

Query: 496 DGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREK 317
           DG   ++  +    DLILMD  LP M G EATR+++   +L  TP+ A TA A  S +++
Sbjct: 765 DGTQALEKLKEHAFDLILMDNQLPKMGGIEATREIRETLKL-GTPIYACTADAQESTKQE 823

Query: 316 AIAAGCDDYDTKPIE 272
            ++AG +    KPI+
Sbjct: 824 FLSAGANRVIVKPIK 838



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>LUXQ_VIBVU (Q8D5Z6) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)|
           (EC 3.1.3.-)
          Length = 857

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 29/75 (38%), Positives = 44/75 (58%)
 Frame = -1

Query: 496 DGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREK 317
           DG   ++  +    DLILMD  LP M G EATR+++   +L  TP+ A TA A  S +++
Sbjct: 765 DGTQALEKLKEHAFDLILMDNQLPKMGGIEATREIRETLKL-GTPIYACTADAQESTKQE 823

Query: 316 AIAAGCDDYDTKPIE 272
            ++AG +    KPI+
Sbjct: 824 FLSAGANRVIVKPIK 838



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>SLN1_YEAST (P39928) Osmolarity two-component system protein SLN1 (EC 2.7.13.3)|
          Length = 1220

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 32/102 (31%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
 Frame = -1

Query: 547  MLSRRLTRKGFE-VVLAHDGAAGVD-----TARREQPDLILMDMSLPVMDGWEATRQLKA 386
            ++ R L  +G E + LA DG    D     T++ E  ++I MD+ +P +DG  +T+ ++ 
Sbjct: 1102 VIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRR 1161

Query: 385  DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 260
            D     +P++ALTA A  S+ ++ + +G + + +KPI+ P+L
Sbjct: 1162 DLGYT-SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKL 1202



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>NTRC_KLEPN (P03029) Nitrogen assimilation regulatory protein|
          Length = 469

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 30/113 (26%), Positives = 52/113 (46%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L R LT  G        G   +D    + PD++L D+ +P MDG    +Q+K    +  
Sbjct: 18  VLERALTGAGLSCTTFESGNEVLDALTTKTPDVLLSDIRMPGMDGLALLKQIKQRHPM-- 75

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRREP 209
            PVI +TAH+       A   G  DY  KP ++   ++ + + +     +++P
Sbjct: 76  LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVDRAISHYQEQQQP 128



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>ZRAR_SALTY (P25852) Transcriptional regulatory protein zraR|
          Length = 441

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
 Frame = -1

Query: 520 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKA-DPELQQTPVIALTA 344
           G+ V LA+ G   +   R +  DL+L D+ +  MDG    +++KA +P +   P++ +TA
Sbjct: 29  GYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIATLKEIKALNPAI---PILIMTA 85

Query: 343 HAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 212
            +      +A+ AG  DY  KP++  RL   + + L   +H RE
Sbjct: 86  FSSVETAVEALKAGALDYLIKPLDFDRLQETLEKAL---AHTRE 126



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>ZRAR_SALTI (Q8Z333) Transcriptional regulatory protein zraR|
          Length = 441

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
 Frame = -1

Query: 520 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKA-DPELQQTPVIALTA 344
           G+ V LA+ G   +   R +  DL+L D+ +  MDG    +++KA +P +   P++ +TA
Sbjct: 29  GYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIATLKEIKALNPAI---PILIMTA 85

Query: 343 HAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 212
            +      +A+ AG  DY  KP++  RL   + + L   +H RE
Sbjct: 86  FSSVETAVEALKAGALDYLIKPLDFDRLQETLEKAL---AHTRE 126



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>SP0F_BACSU (P06628) Sporulation initiation phosphotransferase F (EC 2.7.-.-)|
           (Stage 0 sporulation protein F)
          Length = 124

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 27/104 (25%), Positives = 54/104 (51%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L+    ++G++   A +G   +D   +E+PDL+L+DM +P MDG E  +++K   E   
Sbjct: 18  LLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDE--N 75

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236
             VI +TA+      +++   G   +  KP ++  +   + + L
Sbjct: 76  IRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119



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>VANR_ENTFA (Q47744) Regulatory protein vanRB|
          Length = 220

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 31/101 (30%), Positives = 51/101 (50%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           L    +EV    DG             L+++D+ LP M+G E  R+ +A  +   TP++ 
Sbjct: 22  LAEARYEVDACTDGNEAHTKFYENTYQLVILDIMLPGMNGHELLREFRAQND---TPILM 78

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           +TA +   ++ +A  A  DDY TKP ++  LL ++  LL R
Sbjct: 79  MTALSDDENQIRAFDAEADDYVTKPFKMRILLKRVEALLRR 119



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>NTRC_ECOLI (P0AFB8) Nitrogen regulation protein NR(I)|
          Length = 469

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 29/113 (25%), Positives = 53/113 (46%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L R L   G       +GA  ++    + PD++L D+ +P MDG    +Q+K    +  
Sbjct: 18  VLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPM-- 75

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRREP 209
            PVI +TAH+       A   G  DY  KP ++   ++ + + +     +++P
Sbjct: 76  LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQP 128



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>NTRC_ECO57 (P0AFB9) Nitrogen regulation protein NR(I)|
          Length = 469

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 29/113 (25%), Positives = 53/113 (46%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L R L   G       +GA  ++    + PD++L D+ +P MDG    +Q+K    +  
Sbjct: 18  VLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPM-- 75

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRREP 209
            PVI +TAH+       A   G  DY  KP ++   ++ + + +     +++P
Sbjct: 76  LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQP 128



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>CHEB_NATPD (Q3IRR4) Chemotaxis response regulator protein-glutamate|
           methylesterase (EC 3.1.1.61)
          Length = 355

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQ 371
           ++S  L   G  VV  A +G +GV+  R  +PD++ MD+ +P MDG EAT ++  +    
Sbjct: 20  VISDMLDDAGITVVATASNGESGVEAVRTHEPDVVTMDLKMPGMDGIEATGRIMDE---C 76

Query: 370 QTPVIALTAHA--MASDREKAIAAGCDDYDTKP 278
            TPV+ L+AHA   A    +A+  G  D+  KP
Sbjct: 77  PTPVLVLSAHADDGAELTFEAMDEGAVDFFKKP 109



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>PHOP_SALCH (Q57QC3) Virulence transcriptional regulatory protein phoP|
          Length = 224

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 40/179 (22%), Positives = 74/179 (41%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           L  +L   G +V    D            PD+ ++D+ LP  DG    R+ ++       
Sbjct: 17  LKVQLQDSGHQVDATEDAREADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSSDI--SL 74

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRREPWLPP*PST 185
           PV+ LTA     D+ + +++G DDY TKP  +  +++++  L+ R S      +   P  
Sbjct: 75  PVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSGLASQVINIPPFQ 134

Query: 184 AMKLRRQFLLFGVGTTFTAIAAISLSDVITNTRLSESSREEVQSLLQEFDIKLIETVDL 8
               RR+  +       TA     +  +I N     S    +  L  + +++   T+D+
Sbjct: 135 VDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDV 193



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>ZRAR_ECOLI (P14375) Transcriptional regulatory protein zraR|
          Length = 441

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
 Frame = -1

Query: 520 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKA-DPELQQTPVIALTA 344
           G+ V LA+ G   ++  R +  DL+L D+ +  MDG    +++KA +P +   PV+ +TA
Sbjct: 29  GYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIKALNPAI---PVLIMTA 85

Query: 343 HAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236
           ++      +A+  G  DY  KP++   L + + + L
Sbjct: 86  YSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121



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>CPXR_HAEIN (P44895) Transcriptional regulatory protein cpxR homolog|
          Length = 227

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 31/106 (29%), Positives = 55/106 (51%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +LS  L  +GF+V  A++G   +     E   L+L+D+ +P ++G E  ++++   ++  
Sbjct: 16  LLSTLLELEGFDVETANNGLEALQKLN-ESYKLVLLDVMMPKLNGIETLKEIR---KVSN 71

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            PV+ LTA     DR   +  G DD   KP     L+++I  +L R
Sbjct: 72  VPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRR 117



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>CHEB_RHILO (Q98PD1) Chemotaxis response regulator protein-glutamate|
           methylesterase (EC 3.1.1.61)
          Length = 339

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 22/41 (53%), Positives = 32/41 (78%)
 Frame = -1

Query: 505 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKAD 383
           +A +G   V+  RR+ PDLILMD+++PVMDG EATR++ A+
Sbjct: 31  IATNGREAVEVCRRDLPDLILMDLAMPVMDGVEATRRIMAE 71



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>PHOP_ECO57 (Q8X738) Transcriptional regulatory protein phoP|
          Length = 223

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 38/171 (22%), Positives = 72/171 (42%)
 Frame = -1

Query: 520 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAH 341
           G +V  A D            PD+ ++D+ LP  DG     + +++      P++ LTA 
Sbjct: 24  GHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLICRWRSNDV--SLPILVLTAR 81

Query: 340 AMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRREPWLPP*PSTAMKLRRQF 161
               D+ + ++AG DDY TKP  +  +++++  L+ R S      +   P      RR+ 
Sbjct: 82  ESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRREL 141

Query: 160 LLFGVGTTFTAIAAISLSDVITNTRLSESSREEVQSLLQEFDIKLIETVDL 8
            +       TA     +  +I N     S    +  L  + +++   T+D+
Sbjct: 142 SINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDV 192



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>LUXO_VIBPA (Q87MX7) Regulatory protein luxO|
          Length = 453

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL-KADPELQQTPVI 356
           LT  G ++ +   G   +++     PDLIL+D+ LP M G +    + K+ P++   P+I
Sbjct: 16  LTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSHPDV---PII 72

Query: 355 ALTAHAMASDREKAIAAGCDDYDTKPIELPRL 260
            +TAH       +A+  G  D+  KP E  RL
Sbjct: 73  FMTAHGSIDTAVEAMRHGSQDFLIKPCEADRL 104



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>LUXO_VIBHA (P54299) Luminescence regulatory protein luxO|
          Length = 453

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL-KADPELQQTPVI 356
           LT  G ++ +   G   +++     PDLIL+D+ LP M G +    + K+ P++   P+I
Sbjct: 16  LTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSHPDV---PII 72

Query: 355 ALTAHAMASDREKAIAAGCDDYDTKPIELPRL 260
            +TAH       +A+  G  D+  KP E  RL
Sbjct: 73  FMTAHGSIDTAVEAMRHGSQDFLIKPCEADRL 104



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>BAER_ECOLI (P69228) Transcriptional regulatory protein baeR|
          Length = 240

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 27/86 (31%), Positives = 46/86 (53%)
 Frame = -1

Query: 469 RREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDY 290
           R+  PDLIL+D+ LP  DG    R+++   ++   P++ +TA     DR   +  G DDY
Sbjct: 51  RQTPPDLILLDLMLPGTDGLTLCREIRRFSDI---PIVMVTAKIEEIDRLLGLEIGADDY 107

Query: 289 DTKPIELPRLLSKIAQLLER*SHRRE 212
             KP     +++++  +L R   +RE
Sbjct: 108 ICKPYSPREVVARVKTILRRCKPQRE 133



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>BAER_ECOL6 (P69229) Transcriptional regulatory protein baeR|
          Length = 240

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 27/86 (31%), Positives = 46/86 (53%)
 Frame = -1

Query: 469 RREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDY 290
           R+  PDLIL+D+ LP  DG    R+++   ++   P++ +TA     DR   +  G DDY
Sbjct: 51  RQTPPDLILLDLMLPGTDGLTLCREIRRFSDI---PIVMVTAKIEEIDRLLGLEIGADDY 107

Query: 289 DTKPIELPRLLSKIAQLLER*SHRRE 212
             KP     +++++  +L R   +RE
Sbjct: 108 ICKPYSPREVVARVKTILRRCKPQRE 133



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>NTRC_PROVU (P28787) Nitrogen regulation protein NR(I)|
          Length = 473

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 31/113 (27%), Positives = 52/113 (46%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L R +TR+G            +     EQPD++L D+ +P MDG    + +K   +   
Sbjct: 18  VLERAITREGMLCRAFEHANDVLKALNSEQPDVLLSDIRMPDMDGLSLLKIIKE--QYPT 75

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRREP 209
            PVI +TAH+       A   G  DY  KP ++   L+ I + +     +++P
Sbjct: 76  LPVIIMTAHSDLDAAVNAYQQGAFDYLPKPFDIDETLALIERAITHYREQKQP 128



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>ZRAR_ECO57 (Q8X613) Transcriptional regulatory protein zraR|
          Length = 441

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
 Frame = -1

Query: 520 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKA-DPELQQTPVIALTA 344
           G+ V LA+ G   ++  R    DL+L D+ +  MDG    +++KA +P +   PV+ +TA
Sbjct: 29  GYNVALANSGRQALEQVRERVFDLVLCDVRMAEMDGIATLKEIKALNPAI---PVLIMTA 85

Query: 343 HAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236
           ++      +A+  G  DY  KP++   L + + + L
Sbjct: 86  YSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121



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>SP0A_BACAN (P52928) Stage 0 sporulation protein A|
          Length = 264

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 25/88 (28%), Positives = 48/88 (54%)
 Frame = -1

Query: 502 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDR 323
           A++G   ++  + +QPD++++D+ +P +DG     +++    L+Q  VI LTA       
Sbjct: 35  AYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQPSVIMLTAFGQEDVT 94

Query: 322 EKAIAAGCDDYDTKPIELPRLLSKIAQL 239
           +KA+  G   +  KP ++  L S I Q+
Sbjct: 95  KKAVDLGASYFILKPFDMENLTSHIRQV 122



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>LUXO1_VIBCH (Q9KT84) Regulatory protein luxO|
          Length = 455

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 27/91 (29%), Positives = 45/91 (49%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
           LT    ++ +   G   +++  R +PDLIL+D+ LP M G +    +K   +    P++ 
Sbjct: 16  LTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVK--EKSPDVPIVF 73

Query: 352 LTAHAMASDREKAIAAGCDDYDTKPIELPRL 260
           +TAH       +A+  G  D+  KP E  RL
Sbjct: 74  MTAHGSIDTAVEAMRHGAQDFLIKPCEADRL 104



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>CHEB_DESPS (Q6AJV3) Chemotaxis response regulator protein-glutamate|
           methylesterase (EC 3.1.1.61)
          Length = 364

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
 Frame = -1

Query: 520 GFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTA 344
           G EV+ +AH+G   +D  R  +PDLI +D+ +PVM+G E    LK  P+     +++   
Sbjct: 28  GIEVIGVAHNGKIALDKIRLSKPDLITLDIEMPVMNGIELLEHLKDIPDAPGAVMLSTLT 87

Query: 343 HAMASDREKAIAAGCDDYDTKPIELPRLLSKIA 245
              +    KA+  G  D+  KP E     +K A
Sbjct: 88  SDGSRMTMKALELGAFDFILKPQEKTPAANKAA 120



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>CHEY_THEMA (Q56312) Chemotaxis protein cheY|
          Length = 120

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQ-LKADPEL 374
           ML   +T+ G+EV   A +G   V+  +  +PD++ MD+++P M+G +A ++ +K DP  
Sbjct: 17  MLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNA 76

Query: 373 QQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248
           +     A+   AM  +   AI AG  D+  KP +  R++  +
Sbjct: 77  KIIVCSAMGQQAMVIE---AIKAGAKDFIVKPFQPSRVVEAL 115



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>CHEY_TREPA (P96126) Chemotaxis protein cheY|
          Length = 144

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
 Frame = -1

Query: 532 LTRKGFEVV-LAHDGAAGVDTARREQP--DLILMDMSLPVMDGWEATRQ-LKADPELQQT 365
           LT +G+EV   A DG  GV+  +   P  DL+ MD+++P MDG  A  + L+ D   +  
Sbjct: 44  LTSEGYEVADTAVDGVDGVEKYKAMSPGVDLVTMDITMPKMDGITALEKILEFD---KNA 100

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233
            V+ ++A       +KA+  G  +Y  KP++  ++L +IA +L+
Sbjct: 101 KVVIISALGKEELVKKALLLGAKNYIVKPLDRKKVLERIASVLK 144



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>VRAR_STAES (Q8CNP9) Response regulator protein vraR|
          Length = 209

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
 Frame = -1

Query: 529 TRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPV 359
           T++  EVV   +GA+G D    A   +PDLILMD+ +  MDG EAT ++K D  L Q  V
Sbjct: 24  TQEDIEVV--GEGASGKDAITKAHELKPDLILMDLLMDDMDGVEATTEIKKD--LPQIKV 79

Query: 358 IALTAHAMASDREKAIAAGCDDYDTK 281
           + LT+     +  +A+ +G D Y  K
Sbjct: 80  VMLTSFIEDKEVYRALDSGVDSYILK 105



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>VRAR_STAEQ (Q5HN50) Response regulator protein vraR|
          Length = 209

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
 Frame = -1

Query: 529 TRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPV 359
           T++  EVV   +GA+G D    A   +PDLILMD+ +  MDG EAT ++K D  L Q  V
Sbjct: 24  TQEDIEVV--GEGASGKDAITKAHELKPDLILMDLLMDDMDGVEATTEIKKD--LPQIKV 79

Query: 358 IALTAHAMASDREKAIAAGCDDYDTK 281
           + LT+     +  +A+ +G D Y  K
Sbjct: 80  VMLTSFIEDKEVYRALDSGVDSYILK 105



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>VRAR_STAAW (Q7A0I0) Response regulator protein vraR|
          Length = 209

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
 Frame = -1

Query: 529 TRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPV 359
           T+   EVV   +GA+G +    A   +PDLILMD+ +  MDG EAT Q+K D  L Q  V
Sbjct: 24  TQSDIEVV--GEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKD--LPQIKV 79

Query: 358 IALTAHAMASDREKAIAAGCDDYDTK 281
           + LT+     +  +A+ AG D Y  K
Sbjct: 80  LMLTSFIEDKEVYRALDAGVDSYILK 105



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>VRAR_STAAU (P0C0Z1) Response regulator protein vraR|
          Length = 209

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
 Frame = -1

Query: 529 TRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPV 359
           T+   EVV   +GA+G +    A   +PDLILMD+ +  MDG EAT Q+K D  L Q  V
Sbjct: 24  TQSDIEVV--GEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKD--LPQIKV 79

Query: 358 IALTAHAMASDREKAIAAGCDDYDTK 281
           + LT+     +  +A+ AG D Y  K
Sbjct: 80  LMLTSFIEDKEVYRALDAGVDSYILK 105



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>VRAR_STAAS (Q6G850) Response regulator protein vraR|
          Length = 209

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
 Frame = -1

Query: 529 TRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPV 359
           T+   EVV   +GA+G +    A   +PDLILMD+ +  MDG EAT Q+K D  L Q  V
Sbjct: 24  TQSDIEVV--GEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKD--LPQIKV 79

Query: 358 IALTAHAMASDREKAIAAGCDDYDTK 281
           + LT+     +  +A+ AG D Y  K
Sbjct: 80  LMLTSFIEDKEVYRALDAGVDSYILK 105



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>VRAR_STAAR (Q6GFH3) Response regulator protein vraR|
          Length = 209

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
 Frame = -1

Query: 529 TRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPV 359
           T+   EVV   +GA+G +    A   +PDLILMD+ +  MDG EAT Q+K D  L Q  V
Sbjct: 24  TQSDIEVV--GEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKD--LPQIKV 79

Query: 358 IALTAHAMASDREKAIAAGCDDYDTK 281
           + LT+     +  +A+ AG D Y  K
Sbjct: 80  LMLTSFIEDKEVYRALDAGVDSYILK 105



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>VRAR_STAAN (Q7A4R9) Response regulator protein vraR|
          Length = 209

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
 Frame = -1

Query: 529 TRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPV 359
           T+   EVV   +GA+G +    A   +PDLILMD+ +  MDG EAT Q+K D  L Q  V
Sbjct: 24  TQSDIEVV--GEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKD--LPQIKV 79

Query: 358 IALTAHAMASDREKAIAAGCDDYDTK 281
           + LT+     +  +A+ AG D Y  K
Sbjct: 80  LMLTSFIEDKEVYRALDAGVDSYILK 105



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>VRAR_STAAM (Q7A2Q1) Response regulator protein vraR|
          Length = 209

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
 Frame = -1

Query: 529 TRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPV 359
           T+   EVV   +GA+G +    A   +PDLILMD+ +  MDG EAT Q+K D  L Q  V
Sbjct: 24  TQSDIEVV--GEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKD--LPQIKV 79

Query: 358 IALTAHAMASDREKAIAAGCDDYDTK 281
           + LT+     +  +A+ AG D Y  K
Sbjct: 80  LMLTSFIEDKEVYRALDAGVDSYILK 105



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>VRAR_STAAC (Q5HEP0) Response regulator protein vraR|
          Length = 209

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
 Frame = -1

Query: 529 TRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPV 359
           T+   EVV   +GA+G +    A   +PDLILMD+ +  MDG EAT Q+K D  L Q  V
Sbjct: 24  TQSDIEVV--GEGASGKEAIAKAHELKPDLILMDLLMDDMDGVEATTQIKKD--LPQIKV 79

Query: 358 IALTAHAMASDREKAIAAGCDDYDTK 281
           + LT+     +  +A+ AG D Y  K
Sbjct: 80  LMLTSFIEDKEVYRALDAGVDSYILK 105



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>CHEY_PSEAE (Q51455) Chemotaxis protein cheY|
          Length = 124

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 28/91 (30%), Positives = 43/91 (47%)
 Frame = -1

Query: 502 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDR 323
           A DG   +        D ++ D ++P M G +  R ++AD  L+  PV+ +TA A     
Sbjct: 31  ADDGTTALPMLHSGNFDFLVTDWNMPGMTGIDLLRAVRADERLKHLPVLMVTAEAKRDQI 90

Query: 322 EKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            +A  AG + Y  KP     L  KI ++ ER
Sbjct: 91  IEAAQAGVNGYVVKPFTAQVLKEKIEKIFER 121



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>CHEY_YEREN (Q93P00) Chemotaxis protein cheY|
          Length = 128

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 27/91 (29%), Positives = 44/91 (48%)
 Frame = -1

Query: 502 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDR 323
           A DG   ++  R    D ++ D ++P MDG +  + ++AD  L   PV+ +TA A   + 
Sbjct: 35  AEDGVDALNKLRTGGFDFVVSDWNMPNMDGLDLLKTIRADGALGTLPVLMVTAEAKKENI 94

Query: 322 EKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
             A  AG   Y  KP     L  K+ ++ E+
Sbjct: 95  IAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125



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>SP0A_BACTU (P0A4I4) Stage 0 sporulation protein A|
          Length = 264

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 25/88 (28%), Positives = 47/88 (53%)
 Frame = -1

Query: 502 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDR 323
           A++G   ++    +QPD++++D+ +P +DG     +++    L+Q  VI LTA       
Sbjct: 35  AYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQPSVIMLTAFGQEDVT 94

Query: 322 EKAIAAGCDDYDTKPIELPRLLSKIAQL 239
           +KA+  G   +  KP ++  L S I Q+
Sbjct: 95  KKAVDLGASYFILKPFDMENLTSHIRQV 122



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>SP0A_BACCR (P0A4I3) Stage 0 sporulation protein A|
          Length = 264

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 25/88 (28%), Positives = 47/88 (53%)
 Frame = -1

Query: 502 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDR 323
           A++G   ++    +QPD++++D+ +P +DG     +++    L+Q  VI LTA       
Sbjct: 35  AYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQPSVIMLTAFGQEDVT 94

Query: 322 EKAIAAGCDDYDTKPIELPRLLSKIAQL 239
           +KA+  G   +  KP ++  L S I Q+
Sbjct: 95  KKAVDLGASYFILKPFDMENLTSHIRQV 122



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>MAK2_SCHPO (O14002) Peroxide stress-activated histidine kinase mak2 (EC|
            2.7.13.3) (Mcs4-associated kinase 2) (His-Asp
            phosphorelay kinase phk1)
          Length = 2310

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
 Frame = -1

Query: 547  MLSRRLTRKGFEVVLAHDGAAGVDTARREQ---PDLILMDMSLPVMDGWEATRQLKADPE 377
            +L+++L+  GF+V  A DG   V     +Q     +I  D  +P+ DG EA   ++A   
Sbjct: 2193 LLTKQLSNLGFQVHAAVDGVELVKMYEAKQFGFYSVIFADYHMPIRDGAEAVMDIRAYER 2252

Query: 376  LQQT----PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ--LLER 230
                    PVIALTA    S +++ +  G + Y TKP    +L++ + +  LLE+
Sbjct: 2253 ENNCSTPIPVIALTADIQKSAKQRCLEVGMNFYLTKPFTQKQLVNAVREFVLLEK 2307



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>RPFG_XANC8 (Q4UU85) Response regulator rpfG|
          Length = 378

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 26/74 (35%), Positives = 41/74 (55%)
 Frame = -1

Query: 454 DLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPI 275
           DL+L+D  +P MDG E  R+L+  P  +  P+I +T       R+ A+ AG  D+  KPI
Sbjct: 75  DLLLLDYRMPGMDGLEFARRLRRLPSHRDIPIILITIVGDEPIRQAALEAGVIDFLVKPI 134

Query: 274 ELPRLLSKIAQLLE 233
               L ++ + LL+
Sbjct: 135 RPRELRARCSNLLQ 148



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>CHEY_YERPE (Q8D0P1) Chemotaxis protein cheY|
          Length = 128

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 26/91 (28%), Positives = 43/91 (47%)
 Frame = -1

Query: 502 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDR 323
           A DG   ++  R    D ++ D ++P MDG +  + ++ D  L   PV+ +TA A   + 
Sbjct: 35  AEDGVDALNKLRAGGFDFVVSDWNMPNMDGLDLLKTIRTDGALATLPVLMVTAEAKKENI 94

Query: 322 EKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
             A  AG   Y  KP     L  K+ ++ E+
Sbjct: 95  IAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125



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>CHEB_VIBF1 (Q5E3S1) Chemotaxis response regulator protein-glutamate|
           methylesterase (EC 3.1.1.61)
          Length = 376

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 12/147 (8%)
 Frame = -1

Query: 505 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQ-LKADPELQQTPVIALTA--HAM 335
           +A +G   V+ A+  +PD+I MD+ +PVMDG  A R+ +KA P    TP +  ++  H  
Sbjct: 33  VAVNGKEAVEKAKSLKPDVITMDIEMPVMDGISAVREIMKACP----TPTLMFSSLTHDG 88

Query: 334 ASDREKAIAAGCDDYDTKPIE---------LPRLLSKIAQLLER*SHRREPWLPP*PSTA 182
           A     A+ AG  D+  K  E         +  L  +IA++  + S  R P L    ++ 
Sbjct: 89  AKATLDALDAGALDFLPKKFEDIARNRDEAVSLLQKRIAEIARKKSFMRRPVLSSQSTST 148

Query: 181 MKLRRQFLLFGVGTTFTAIAAISLSDV 101
           ++ R         TT TA +A++ S V
Sbjct: 149 VESR-------TATTRTATSALTASPV 168



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>CHVI_RHISN (P50351) Transcriptional regulatory protein chvI|
          Length = 238

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 34/110 (30%), Positives = 54/110 (49%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           +S  L  +G++V    D +A ++      P L + D+ +P MDG E  R+L+   +L   
Sbjct: 17  VSIALEAEGYKVETYTDRSA-LEGLLARPPHLAIFDIKMPRMDGMELLRRLRQKSDL--- 72

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRR 215
           PVI LT+     D    +  G DD+ TKP     L+ ++  +L R S  R
Sbjct: 73  PVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRASGPR 122



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>VRAR_STAS1 (Q49YS9) Response regulator protein vraR|
          Length = 209

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 27/71 (38%), Positives = 41/71 (57%)
 Frame = -1

Query: 493 GAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKA 314
           G   ++ A   +PDLILMD+ +  MDG EAT Q+K D  L    V+ LT++   ++  +A
Sbjct: 37  GKDAIEKAHELKPDLILMDLLMDDMDGVEATEQVKKD--LPNIKVVMLTSYIEDNEVYRA 94

Query: 313 IAAGCDDYDTK 281
           + +G D Y  K
Sbjct: 95  LDSGVDSYILK 105



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>PMRA_PECCC (Q70FH0) Transcriptional regulatory protein pmrA|
          Length = 222

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
 Frame = -1

Query: 535 RLTRKGFEVVLAHDGAAGVDTARREQPD---------LILMDMSLPVMDGWEATRQLKAD 383
           +L ++G  + L+H+G A       ++ D         L+++D+ LP  DG     + + +
Sbjct: 10  KLLQEGLLLALSHEGYACDCAGTAKEADALIGSAHYSLVILDLGLPDDDGLALLSRWRKN 69

Query: 382 PELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
               Q PV+ LTA     DR   +  G DDY  KP  L  L +++  L+ R
Sbjct: 70  N--YQHPVLILTARDKVDDRVSGLDVGADDYLAKPFALTELQARVRALIRR 118



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>BASR_SALTY (P36556) Transcriptional regulatory protein basR/pmrA|
          Length = 222

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
 Frame = -1

Query: 484 GVDTARREQPDL-------ILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASD 326
           GV TAR  +  L       +++D+ LP  DG     +++   +    PV+ LTAH   +D
Sbjct: 29  GVSTARAAEHSLESGHYSLMVLDLGLPDEDGLHFLTRIRQ--KKYTLPVLILTAHDTLND 86

Query: 325 REKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 212
           R   +  G DDY  KP  L  L ++I  LL R +++ E
Sbjct: 87  RITGLDVGADDYLVKPFALEELHARIRALLRRHNNQGE 124



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>BCER_BACHD (Q9K621) Sensory transduction protein bceR|
          Length = 231

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 26/105 (24%), Positives = 53/105 (50%)
 Frame = -1

Query: 544 LSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQT 365
           +  RL++  ++V    +    ++     +PDL+++D+ LP  DG+   R ++   +    
Sbjct: 17  IKERLSQWSYDVFGVSNFEKVIEEFTSLKPDLVIIDIQLPKFDGFHWCRMIR---QHSNV 73

Query: 364 PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           P+I L++    +D   ++  G DD+  KP     L++KI  +L R
Sbjct: 74  PIIFLSSRDHPTDMVMSMQLGADDFIQKPFHFDVLVAKIQAILRR 118



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>CCDB_BACSU (P45709) Protein ccdB|
          Length = 120

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
 Frame = -1

Query: 502 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQ-LKADPELQQTPVIALTAHAMASD 326
           A DG    D  ++ +PDL+ MD+++PV +G +A R  L  DP+ +   VI  TA      
Sbjct: 32  AADGEQAADLYKKLRPDLVTMDITMPVKNGIKALRDILTFDPKAK---VIMCTAMRQQRI 88

Query: 325 REKAIAAGCDDYDTKPIELPRLLSKIAQLL 236
             +AI  G  D+  KP E  ++L  +++++
Sbjct: 89  VTEAIELGAKDFIVKPFEETKVLEAVSRVM 118



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>VRAR_STAHJ (Q4L7J5) Response regulator protein vraR|
          Length = 209

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
 Frame = -1

Query: 514 EVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTA 344
           ++ +  +G +G D    A   +PDLILMD+ +  MDG EAT Q+K D  L    V+ LT+
Sbjct: 27  DIEIVGEGESGKDAIAKAHELKPDLILMDLLMDDMDGVEATTQIKKD--LPHIKVVMLTS 84

Query: 343 HAMASDREKAIAAGCDDYDTK 281
                +  +A+ AG D Y  K
Sbjct: 85  FIEDKEVYRALDAGVDSYILK 105



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>SP0A_MOOTA (P52941) Stage 0 sporulation protein A homolog|
          Length = 256

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 23/89 (25%), Positives = 49/89 (55%)
 Frame = -1

Query: 505 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASD 326
           +AH+G   ++  + ++PD++++D+ +P +DG     +L+      +  ++ LTA    S 
Sbjct: 34  VAHNGQETLELIQEQEPDIVILDIIMPHLDGIGVLEKLQVLNFEPRPKIVILTALGQESM 93

Query: 325 REKAIAAGCDDYDTKPIELPRLLSKIAQL 239
             +++  G D Y  KP +L  L +++ QL
Sbjct: 94  TMRSVELGADYYILKPFDLEVLGNRLRQL 122



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>CHEB1_RALEJ (Q46V28) Chemotaxis response regulator protein-glutamate|
           methylesterase 1 (EC 3.1.1.61)
          Length = 341

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
 Frame = -1

Query: 517 FEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAH 341
           FE+V +A DG   V  A    PD+ILMD+ +PVMDG EATR++ A       P++ +T  
Sbjct: 26  FEIVWVAGDGEQAVQLAASHTPDVILMDLLMPVMDGVEATRRIMA---ATPCPIVVVTTD 82

Query: 340 AMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239
              +  +   A G    D   ++ P L    A+L
Sbjct: 83  LGRNATQVFDAMGHGAIDA--VDTPTLTESDAKL 114



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>CHEY_LISMO (P0A4H5) Chemotaxis protein cheY|
          Length = 119

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKA-DPEL 374
           M+   +    FEVV  A +G   V      +PD++ +D+++P MDG EA  Q+ A DP  
Sbjct: 16  MIKNIVKDSDFEVVAEAENGLEAVKKYDEVKPDIVTLDITMPEMDGLEALAQIMAKDPSA 75

Query: 373 QQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248
           +     A+    M  D   AI  G  D+  KP +  R+L  +
Sbjct: 76  KVIMCSAMGQQGMVVD---AIKKGAKDFIVKPFQADRVLEAL 114



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>CHEY_LISIN (P0A4H6) Chemotaxis protein cheY|
          Length = 119

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKA-DPEL 374
           M+   +    FEVV  A +G   V      +PD++ +D+++P MDG EA  Q+ A DP  
Sbjct: 16  MIKNIVKDSDFEVVAEAENGLEAVKKYDEVKPDIVTLDITMPEMDGLEALAQIMAKDPSA 75

Query: 373 QQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248
           +     A+    M  D   AI  G  D+  KP +  R+L  +
Sbjct: 76  KVIMCSAMGQQGMVVD---AIKKGAKDFIVKPFQADRVLEAL 114



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>CHEY_SALTY (P0A2D5) Chemotaxis protein cheY|
          Length = 128

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 26/91 (28%), Positives = 43/91 (47%)
 Frame = -1

Query: 502 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDR 323
           A DG   ++  +      I+ D ++P MDG E  + ++AD  +   PV+ +TA A   + 
Sbjct: 35  AEDGVDALNKLQAGGFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENI 94

Query: 322 EKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
             A  AG   Y  KP     L  K+ ++ E+
Sbjct: 95  IAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125



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>CHEY_SALTI (P0A2D6) Chemotaxis protein cheY|
          Length = 128

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 26/91 (28%), Positives = 43/91 (47%)
 Frame = -1

Query: 502 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDR 323
           A DG   ++  +      I+ D ++P MDG E  + ++AD  +   PV+ +TA A   + 
Sbjct: 35  AEDGVDALNKLQAGGFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENI 94

Query: 322 EKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
             A  AG   Y  KP     L  K+ ++ E+
Sbjct: 95  IAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125



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>CHEY_ENTCL (Q9FAD7) Chemotaxis protein cheY|
          Length = 128

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 25/91 (27%), Positives = 43/91 (47%)
 Frame = -1

Query: 502 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDR 323
           A DG   ++  +      ++ D ++P MDG E  + ++AD  +   PV+ +TA A   + 
Sbjct: 35  AEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRADAGMASMPVLMVTAEAKKENI 94

Query: 322 EKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
             A  AG   Y  KP     L  K+ ++ E+
Sbjct: 95  IAAAQAGASGYVVKPFTAATLEEKLGKIFEK 125



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>TCSB_EMENI (Q9P4U6) Two-component system protein B precursor (EC 2.7.13.3) (NHK1|
            protein) (SLN1 homolog)
          Length = 1070

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
 Frame = -1

Query: 517  FEVVLAHDGAAGVDTARREQP-----DLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 353
            ++V +  DG    DT +         DLI MD+ +P +DG E+TR ++        P++A
Sbjct: 958  YDVTVVKDGQEAYDTVKANMEEGKVFDLIFMDIQMPNLDGIESTRLIRQMG--CSAPIVA 1015

Query: 352  LTAHAMASDREKAIAAGCDDYDTKPIELPRL 260
            L+A +  S+ +  + +G D + +KPI  P L
Sbjct: 1016 LSAFSEDSNIKDCMNSGMDMFISKPIRRPAL 1046



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>CHEY_SHIFL (P0AE69) Chemotaxis protein cheY|
          Length = 128

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 25/91 (27%), Positives = 43/91 (47%)
 Frame = -1

Query: 502 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDR 323
           A DG   ++  +      ++ D ++P MDG E  + ++AD  +   PV+ +TA A   + 
Sbjct: 35  AEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENI 94

Query: 322 EKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
             A  AG   Y  KP     L  K+ ++ E+
Sbjct: 95  IAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125



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>CHEY_ECOLI (P0AE67) Chemotaxis protein cheY|
          Length = 128

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 25/91 (27%), Positives = 43/91 (47%)
 Frame = -1

Query: 502 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDR 323
           A DG   ++  +      ++ D ++P MDG E  + ++AD  +   PV+ +TA A   + 
Sbjct: 35  AEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENI 94

Query: 322 EKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
             A  AG   Y  KP     L  K+ ++ E+
Sbjct: 95  IAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125



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>CHEY_ECO57 (P0AE68) Chemotaxis protein cheY|
          Length = 128

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 25/91 (27%), Positives = 43/91 (47%)
 Frame = -1

Query: 502 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDR 323
           A DG   ++  +      ++ D ++P MDG E  + ++AD  +   PV+ +TA A   + 
Sbjct: 35  AEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENI 94

Query: 322 EKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
             A  AG   Y  KP     L  K+ ++ E+
Sbjct: 95  IAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125



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>NTRC_SALTY (P41789) Nitrogen regulation protein NR(I)|
          Length = 469

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 28/113 (24%), Positives = 51/113 (45%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           +L R L   G       +G   +     + PD++L D+ +P MDG    +Q+K    +  
Sbjct: 18  VLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPM-- 75

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRREP 209
            PVI +TAH+       A   G  DY  KP ++   ++ + + +     +++P
Sbjct: 76  LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQP 128



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>SP0A_CLOPA (P52940) Stage 0 sporulation protein A homolog|
          Length = 273

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
 Frame = -1

Query: 511 VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTP-VIALTAHAM 335
           V +A DG   +     ++PDL+++D+ +P MDG     +L A+  +   P VI L+A   
Sbjct: 34  VGIAKDGIEALKLIEEKKPDLVILDIIMPNMDGLVVLEKL-ANINIDPVPNVIVLSAVGQ 92

Query: 334 ASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239
               ++AI  G D Y  KP ++     +I Q+
Sbjct: 93  DKITQRAITLGADYYVVKPFDMDVFTKRIRQM 124



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>SP0A_BREPA (P52929) Stage 0 sporulation protein A (Fragment)|
          Length = 212

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 25/90 (27%), Positives = 46/90 (51%)
 Frame = -1

Query: 505 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASD 326
           +A++G   V   +   PD++++D+ +P +DG     Q++A     Q  +I LTA      
Sbjct: 34  VAYNGNEVVRLLQERVPDVLILDIIMPHLDGLAVLEQIQAMRLSPQPKIIMLTAFGQEEI 93

Query: 325 REKAIAAGCDDYDTKPIELPRLLSKIAQLL 236
            +KA+  G   Y  KP ++  L  +I Q++
Sbjct: 94  TKKAVELGAAYYILKPFDMEVLAQRIRQII 123



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>SPAR_BACSU (P33112) Subtilin biosynthesis regulatory protein spaR|
          Length = 220

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 26/75 (34%), Positives = 41/75 (54%)
 Frame = -1

Query: 454 DLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPI 275
           DLIL+D+ +P +DG+E  +Q++    L   P++ LTA        K +  G DDY TKP 
Sbjct: 46  DLILLDVMMPDIDGFELCKQIRP---LVDCPILFLTAKTEEEAIVKGLITGGDDYITKPF 102

Query: 274 ELPRLLSKIAQLLER 230
            +  L +++   L R
Sbjct: 103 GVRELSARVNAHLRR 117



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>CHEB_HALSA (Q9HQW6) Chemotaxis response regulator protein-glutamate|
           methylesterase (EC 3.1.1.61)
          Length = 347

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 17/153 (11%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQ 371
           ++S  L   G +VV  A +GA  +D     QPD+I MD+ +P MDG EAT ++  +   Q
Sbjct: 16  VISDILEDGGVDVVGTAENGARALDAVTDVQPDVITMDVEMPEMDGIEATAEIMRE---Q 72

Query: 370 QTPVIALTAHAM--ASDREKAIAAGCDDYDTKP------------IELPRLLSKIAQLLE 233
            TP++ ++A     A    +A+  G  D   KP             EL   + ++A    
Sbjct: 73  PTPILMVSALTTEDADATLEAMEKGAIDTFAKPGGTISTELSGHSEELVAAVERVASADP 132

Query: 232 R*SH--RREPWLPP*PSTAMKLRRQFLLFGVGT 140
              H    EP  PP  +T+       LL G  T
Sbjct: 133 TAGHDVEMEPASPPDATTSEYADNPTLLIGAST 165



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>NISR_LACLA (Q07597) Nisin biosynthesis regulatory protein nisR|
          Length = 229

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 27/106 (25%), Positives = 55/106 (51%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQ 368
           ++   L  + +EV    + +  +D    +  DLIL+D+ +  ++G E  ++++ +     
Sbjct: 17  LMKTALEMRNYEVATHQNISLPLDITDFQGFDLILLDIMMSNIEGTEICKRIRREIS--- 73

Query: 367 TPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
           TP+I ++A     D    +  G DDY TKP  L +L++K+   ++R
Sbjct: 74  TPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKR 119



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>SP0A_BACSU (P06534) Stage 0 sporulation protein A|
          Length = 267

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
 Frame = -1

Query: 526 RKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIAL 350
           ++  EV+ +A++G   +   + + PD++++D+ +P +DG     +L+     +Q  VI L
Sbjct: 26  QEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQPNVIML 85

Query: 349 TAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239
           TA       +KA+  G   +  KP ++  L+  I Q+
Sbjct: 86  TAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQV 122



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>CHEY_ECOL6 (Q8FGP6) Chemotaxis protein cheY|
          Length = 128

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 25/91 (27%), Positives = 43/91 (47%)
 Frame = -1

Query: 502 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDR 323
           A DG   ++  +      ++ D ++P MDG E  + ++AD  +   PV+ +TA A   + 
Sbjct: 35  AEDGLDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENI 94

Query: 322 EKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
             A  AG   Y  KP     L  K+ ++ E+
Sbjct: 95  IAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125



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>CHEY_CAMJE (P71129) Chemotaxis protein cheY homolog|
          Length = 130

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVL-AHDGAAGVDT-ARREQPDLILMDMSLPVMDGWEATRQLKADPEL 374
           ++   LTR G + VL A  G    D   + E   +++ D ++P M+G E  ++++A+ + 
Sbjct: 15  IIKNTLTRLGHDDVLEAEHGVEAWDLLTKNEDVKVLITDWNMPEMNGLELVKKVRAEKKY 74

Query: 373 QQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236
           +  P+I +T     ++   A+ AG ++Y  KP     L  K+  +L
Sbjct: 75  EDMPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEDVL 120



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>CHEB3_PSEPK (Q88MS5) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 3 operon (EC 3.1.1.61)
          Length = 337

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 22/43 (51%), Positives = 30/43 (69%)
 Frame = -1

Query: 511 VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKAD 383
           V +A +GA  V     + PDLILMD+ +PVMDG EATR++ A+
Sbjct: 29  VWVASNGAEAVQRCTEQLPDLILMDLIMPVMDGVEATRRIMAE 71



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>RCP1_SYNY3 (Q55169) Response regulator rcp1|
          Length = 147

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
 Frame = -1

Query: 514 EVVLAHDGAAGVDTARRE-------QPDLILMDMSLPVMDGWEATRQLKADPELQQTPVI 356
           E+++  DG A +   +++       +P+LIL+D++LP  DG E   ++K +P+L++ PV+
Sbjct: 36  ELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVV 95

Query: 355 ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248
            LT      D   +     + Y TK   L  L   +
Sbjct: 96  VLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMV 131



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>LIAR_BACSU (O32197) Sensory transduction protein liaR|
          Length = 211

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 41/116 (35%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
 Frame = -1

Query: 502 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDR 323
           A DG+ GV  A    PD+ILMD+ +  MDG EAT+Q+    EL    +I LT+       
Sbjct: 33  ASDGSEGVRLAVELSPDVILMDLVMEGMDGIEATKQICR--ELSDPKIIVLTSFIDDDKV 90

Query: 322 EKAIAAGCDDY---DTKPIEL-----------PRLLSKIA-QLLER*SHRREPWLP 200
              I AG   Y    +K  E+           P+L SK+A ++L R  H  E  LP
Sbjct: 91  YPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALP 146



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>CHEB_SYMTH (Q67P67) Chemotaxis response regulator protein-glutamate|
           methylesterase (EC 3.1.1.61)
          Length = 362

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
 Frame = -1

Query: 502 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAM--AS 329
           A DG  G++   + QPD++ +D+ +P +DG+   R++ A    + TPV+ +++H    A 
Sbjct: 40  ARDGQDGLEKVLQLQPDVVTLDIEMPRLDGYGTLREIMA---RRPTPVVMVSSHTREGAE 96

Query: 328 DREKAIAAGCDDYDTKP 278
              +A+A G  D+  KP
Sbjct: 97  ATIRALALGAVDFVAKP 113



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>RPFC_XANCP (P0C0F6) Sensory/regulatory protein rpfC (EC 2.7.13.3)|
          Length = 677

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
 Frame = -1

Query: 601 RIRXXXXXXXXXXXXXXDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPV 422
           R+R               +L R L + G +V+  +     +D    E  D +++D+ +P 
Sbjct: 409 RVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPG 468

Query: 421 MDGWEATRQLKADPE--LQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248
           M+G +  +QL+      ++ TPV+ L+A            AG   +  KP+   +LL  +
Sbjct: 469 MNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTL 528

Query: 247 AQL 239
           A L
Sbjct: 529 ADL 531



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>SP0A_CLOBE (P52936) Stage 0 sporulation protein A homolog (Fragment)|
          Length = 223

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
 Frame = -1

Query: 505 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTP-VIALTAHAMAS 329
           +A DG+  ++     +PDL+++D+ +P +DG     +L    +L++ P +I L+A     
Sbjct: 36  IAKDGSEALELIVERKPDLVILDIIMPHLDGLGVLEKLNT-MQLEKVPRIIILSAVGQDK 94

Query: 328 DREKAIAAGCDDYDTKPIELPRLLSKIAQL 239
             ++AI  G D Y  KP ++     +I ++
Sbjct: 95  ITQQAITLGADYYTVKPFDMEVFTKRIREM 124



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>TRPO_PSEAE (P24908) Putative transcriptional regulator|
          Length = 207

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
 Frame = -1

Query: 526 RKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIAL 350
           R GF +V  A +GA  +  AR++ PDL ++D+ +P +DG E   +LK+      T V+ L
Sbjct: 23  RDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKS--LKLDTKVLVL 80

Query: 349 TAHAMASDREKAIAAGCDDYDTKPIELPRLL 257
           T    A    + + AG   + +K   L  LL
Sbjct: 81  TRQNPAQFAPRCLQAGAMGFVSKRENLSELL 111



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>NARP_ECOLI (P31802) Nitrate/nitrite response regulator protein narP|
          Length = 215

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
 Frame = -1

Query: 520 GFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTA 344
           G EVV  A DGA+ +D A R   D+IL+D+++  M G +    L+ D    Q  +I LT 
Sbjct: 31  GSEVVAEAGDGASAIDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQ--IIILTV 88

Query: 343 HAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248
              +SD    I AG D Y  K  +   LL  I
Sbjct: 89  SDASSDVFALIDAGADGYLLKDSDPEVLLEAI 120



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>RPFC_XANC8 (P0C0F7) Sensory/regulatory protein rpfC (EC 2.7.13.3)|
          Length = 677

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
 Frame = -1

Query: 601 RIRXXXXXXXXXXXXXXDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPV 422
           R+R               +L R L + G +V+  +     +D    E  D +++D+ +P 
Sbjct: 409 RVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPG 468

Query: 421 MDGWEATRQLKADPE--LQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248
           M+G +  +QL+      ++ TPV+ L+A            AG   +  KP+   +LL  +
Sbjct: 469 MNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVLAAKLLDTL 528

Query: 247 AQL 239
           A L
Sbjct: 529 ADL 531



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>BVGS_BORPE (P16575) Virulence sensor protein bvgS precursor (EC 2.7.13.3)|
          Length = 1238

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
 Frame = -1

Query: 547  MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKAD---PE 377
            +L ++L   G  V+ A  G A +   R    D+++ D ++P + G+E  R+++A    P 
Sbjct: 987  LLRQQLDYLGQRVIAADSGEAALALWREHAFDVVITDCNMPGISGYELARRIRAAEAAPG 1046

Query: 376  LQQTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
              +T  I    TA A   + ++  AAG DD   KPI +  L  ++ + + R
Sbjct: 1047 YGRTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNEAVAR 1097



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>CHEB3_PSESM (Q886S8) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 3 operon (EC 3.1.1.61)
          Length = 336

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
 Frame = -1

Query: 505 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTP--VIALTAHAMA 332
           +A +GA  V  +  + PDLILMD+ +PVMDG EATR++ A     +TP  ++ +T     
Sbjct: 31  VAANGADAVQRSIEQTPDLILMDLIMPVMDGVEATRRIMA-----ETPCAIVIVTVDREQ 85

Query: 331 SDREKAIAAG---CDDYDTKPIELPRLLSKIAQLLER 230
           + R    A G    D  DT  I  P      A LL +
Sbjct: 86  NMRRVFEAMGHGALDVVDTPAIGGPNPREAAAPLLRK 122



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>CHEB3_PSE14 (Q48F23) Chemotaxis response regulator protein-glutamate|
           methylesterase 3 (EC 3.1.1.61)
          Length = 336

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
 Frame = -1

Query: 505 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTP--VIALTAHAMA 332
           +A +GA  V     + PDLILMD+ +PVMDG EATR++ A     +TP  ++ +T     
Sbjct: 31  VASNGADAVQRCVEQTPDLILMDLIMPVMDGVEATRRIMA-----ETPCAIVIVTVDREQ 85

Query: 331 SDREKAIAAG---CDDYDTKPIELPRLLSKIAQLLER 230
           + R    A G    D  DT  I  P      A LL +
Sbjct: 86  NMRRVFEAMGHGALDVVDTPAIGGPNPKEAAAPLLRK 122



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>LUXN_VIBHA (P54301) Autoinducer 1 sensor kinase/phosphatase luxN (EC 2.7.13.3)|
           (EC 3.1.3.-)
          Length = 849

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
 Frame = -1

Query: 532 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQ-QTPVI 356
           L + G   + A++G   V+  +    DLILMD+ +PVM+G++A++++K   EL  QTP++
Sbjct: 740 LNQLGVNSLQANNGENAVEVFKANHVDLILMDVQMPVMNGFDASQRIK---ELSPQTPIV 796

Query: 355 ALTAHA 338
           AL+  +
Sbjct: 797 ALSGES 802



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>CHEB_METMP (P62647) Chemotaxis response regulator protein-glutamate|
           methylesterase (EC 3.1.1.61)
          Length = 365

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
 Frame = -1

Query: 511 VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMA 332
           V  A DG    +  ++ +P++I MD+ +P+M+G +AT+Q+ A    + TP++ L+A    
Sbjct: 32  VATAKDGKEAFELVKKLEPNVITMDVEMPIMNGIDATKQIMA---YKPTPILMLSAVTKQ 88

Query: 331 SDRE--KAIAAGCDDYDTKP 278
                 KA+  G  D+  KP
Sbjct: 89  GSEATLKALDNGAVDFIEKP 108



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>CHEB2_BURS3 (Q393F2) Chemotaxis response regulator protein-glutamate|
           methylesterase 2 (EC 3.1.1.61)
          Length = 339

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 43/141 (30%), Positives = 61/141 (43%), Gaps = 11/141 (7%)
 Frame = -1

Query: 505 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASD 326
           +A DG   VD      PDL+LMD+ +P +DG  ATR++ A        V A  +   +S 
Sbjct: 31  VATDGDEAVDFCVAHPPDLVLMDLVMPKVDGVAATRRIMARAPCAILVVTASVSANTSSV 90

Query: 325 REKAIAAGCDDYDTKPIEL--------PRLLSKIAQLLER*SHRREPWLPP*PSTAMKLR 170
            E   A   D  DT  + L          LL+KI Q+      R    +PP P+     R
Sbjct: 91  YEAMGAGALDAVDTPTLALGLSTDASPQALLAKIDQIGRLLESRTAALVPPGPAPE---R 147

Query: 169 RQFLLFGVGTTF---TAIAAI 116
            Q  L  +G +    TA+ A+
Sbjct: 148 GQPTLVAIGASAGGPTALTAL 168



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>BCER_BACSU (O34951) Sensory transduction protein bceR|
          Length = 231

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 26/105 (24%), Positives = 50/105 (47%)
 Frame = -1

Query: 535 RLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVI 356
           RLT   ++V    D +  +       PD +++D+ LP  DG+   R +++   +   P++
Sbjct: 20  RLTGWSYDVYGIQDFSQVLQEFAAVNPDCVIIDVQLPKFDGFHWCRLIRSRSNV---PIL 76

Query: 355 ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SH 221
            L++    +D   ++  G DD+  KP     L++KI  +  R  H
Sbjct: 77  FLSSRDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAMFRRVHH 121



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>SP0A_CLOAB (P58253) Stage 0 sporulation protein A homolog|
          Length = 281

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 23/91 (25%), Positives = 44/91 (48%)
 Frame = -1

Query: 511 VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMA 332
           V +A DG   +     ++PDL+++D+ +P +DG     +L          +I L+A    
Sbjct: 34  VGIAKDGVEALKLIENKKPDLVVLDIIMPRLDGLGVLEKLNNKDAENLPRIIVLSAVGQD 93

Query: 331 SDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239
              ++AI  G D Y  KP ++    ++I ++
Sbjct: 94  KITQRAITLGADYYVVKPFDMDVFTNRIREM 124



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>CHEB1_VIBVY (Q7MIQ5) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 1 operon (EC 3.1.1.61)
          Length = 376

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
 Frame = -1

Query: 505 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTA--HAMA 332
           +A +G   V+ A+R +PD+I MD+ +PVMDG  A R++ A      TP++  ++  H  A
Sbjct: 33  VAVNGKEAVEKAKRLKPDVITMDIEMPVMDGISAVREIMAS---VPTPILMFSSLTHDGA 89

Query: 331 SDREKAIAAGCDDYDTKPIE 272
                A+ AG  D+  K  E
Sbjct: 90  KATLDALDAGALDFLPKKFE 109



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>CHEB1_VIBVU (Q8DB67) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 1 operon (EC 3.1.1.61)
          Length = 376

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
 Frame = -1

Query: 505 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTA--HAMA 332
           +A +G   V+ A+R +PD+I MD+ +PVMDG  A R++ A      TP++  ++  H  A
Sbjct: 33  VAVNGKEAVEKAKRLKPDVITMDIEMPVMDGISAVREIMAS---VPTPILMFSSLTHDGA 89

Query: 331 SDREKAIAAGCDDYDTKPIE 272
                A+ AG  D+  K  E
Sbjct: 90  KATLDALDAGALDFLPKKFE 109



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>HNR_SHIFL (P0AEV3) Protein hnr|
          Length = 337

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 25/83 (30%), Positives = 45/83 (54%)
 Frame = -1

Query: 520 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAH 341
           G   VLA DG   ++      PDL++ D+++P M+G +    ++   +  QTPV+ ++A 
Sbjct: 31  GATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGD--QTPVLVISAT 88

Query: 340 AMASDREKAIAAGCDDYDTKPIE 272
              +D  KA+  G +D   KP++
Sbjct: 89  ENMADIAKALRLGVEDVLLKPVK 111



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>HNR_ECOLI (P0AEV1) Protein hnr|
          Length = 337

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 25/83 (30%), Positives = 45/83 (54%)
 Frame = -1

Query: 520 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAH 341
           G   VLA DG   ++      PDL++ D+++P M+G +    ++   +  QTPV+ ++A 
Sbjct: 31  GATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGD--QTPVLVISAT 88

Query: 340 AMASDREKAIAAGCDDYDTKPIE 272
              +D  KA+  G +D   KP++
Sbjct: 89  ENMADIAKALRLGVEDVLLKPVK 111



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>HNR_ECO57 (P0AEV2) Protein hnr|
          Length = 337

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 25/83 (30%), Positives = 45/83 (54%)
 Frame = -1

Query: 520 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAH 341
           G   VLA DG   ++      PDL++ D+++P M+G +    ++   +  QTPV+ ++A 
Sbjct: 31  GATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGD--QTPVLVISAT 88

Query: 340 AMASDREKAIAAGCDDYDTKPIE 272
              +D  KA+  G +D   KP++
Sbjct: 89  ENMADIAKALRLGVEDVLLKPVK 111



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>CSSR_BACSU (O32192) Transcriptional regulatory protein cssR|
          Length = 225

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 31/109 (28%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLAHDGAAGVDTARREQ---PDLILMDMSLPVMDGWEATRQLKA-DP 380
           +L++ L  +G+ +     G    + AR++    P L ++D+ LP  DG+   +++KA DP
Sbjct: 17  LLTKYLENEGWNITSFTKG----EDARKKMTPSPHLWILDIMLPDTDGYTLIKEIKAKDP 72

Query: 379 ELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233
           ++   PVI ++A     DR   +  G +DY +KP     L+ ++ +LL+
Sbjct: 73  DV---PVIFISARDADIDRVLGLELGSNDYISKPFLPRELIIRVQKLLQ 118



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>CHEB2_PSEU2 (Q4ZWW3) Chemotaxis response regulator protein-glutamate|
           methylesterase 2 (EC 3.1.1.61)
          Length = 336

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 21/41 (51%), Positives = 29/41 (70%)
 Frame = -1

Query: 505 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKAD 383
           +A +GA  V     + PDLILMD+ +PVMDG EATR++ A+
Sbjct: 31  VASNGADAVQRCVEQTPDLILMDLIMPVMDGVEATRRIMAE 71



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>CHEB1_PSEPF (Q3KHF6) Chemotaxis response regulator protein-glutamate|
           methylesterase 1 (EC 3.1.1.61)
          Length = 336

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 22/43 (51%), Positives = 29/43 (67%)
 Frame = -1

Query: 511 VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKAD 383
           V +A +GA  V       PDLILMD+ +PVMDG EATR++ A+
Sbjct: 29  VWVASNGAEAVRLCAENTPDLILMDLIMPVMDGVEATRRIMAE 71



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>SP0A_BACME (P52932) Stage 0 sporulation protein A (Fragment)|
          Length = 212

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
 Frame = -1

Query: 526 RKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIAL 350
           ++  EV+ +A++G   +   + + PD++++D+ +P +DG     QLK   +     VI L
Sbjct: 26  QEDMEVIGVAYNGQECLSILKDKNPDVLVLDIIMPHLDGLAVLGQLKEMKKENYPNVIML 85

Query: 349 TAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239
           TA       +KA+  G   +  KP ++  L++ I Q+
Sbjct: 86  TAFGQEDVTKKAVDLGAAYFILKPFDMENLVNHIRQV 122



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>PILR_PSEAE (Q00934) Type 4 fimbriae expression regulatory protein pilR|
          Length = 445

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 28/77 (36%), Positives = 40/77 (51%)
 Frame = -1

Query: 466 REQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYD 287
           RE  DL L DM LP   G +  + ++      QTPV  +TA+       +A+ AG  D+ 
Sbjct: 45  REPFDLCLTDMRLPDGSGLDLVQYIQQ--RHPQTPVAMITAYGSLDTAIQALKAGAFDFL 102

Query: 286 TKPIELPRLLSKIAQLL 236
           TKP++L RL   +A  L
Sbjct: 103 TKPVDLGRLRELVATAL 119



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>SP0A_BACST (P52934) Stage 0 sporulation protein A|
          Length = 259

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 25/88 (28%), Positives = 45/88 (51%)
 Frame = -1

Query: 502 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDR 323
           A++G   +     ++PD++L+D+ +P +DG     +++A  E  Q  VI LTA       
Sbjct: 34  AYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAGFE-HQPNVIMLTAFGQEDVT 92

Query: 322 EKAIAAGCDDYDTKPIELPRLLSKIAQL 239
           +KA+  G   +  KP ++  L   I Q+
Sbjct: 93  KKAVELGASYFILKPFDMENLAHHIRQV 120



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>SP0A_BACSH (P42012) Stage 0 sporulation protein A|
          Length = 263

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 40/166 (24%), Positives = 72/166 (43%)
 Frame = -1

Query: 511 VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMA 332
           +  A +G   +       PD++L+D+ +P +DG      +  +  +    VI LTA    
Sbjct: 32  IATASNGKVCLQMLEEYTPDILLLDIIMPHLDGLAVLEAMYQNDRMSSIQVIMLTAFGQE 91

Query: 331 SDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRREPWLPP*PSTAMKLRRQFLLF 152
              ++A+  G   +  KP E  +L+ KI     + +   +      P+T  KL +  L  
Sbjct: 92  DVMKQAVDLGASYFMLKPFEFDQLVQKILHCAGQKASIPKKASVLQPTTPQKLNQHQL-- 149

Query: 151 GVGTTFTAIAAISLSDVITNTRLSESSREEVQSLLQEFDIKLIETV 14
              +T TAI  I    V  + +     RE +Q + +  DI+L+ +V
Sbjct: 150 --DSTITAI--IKEIGVPAHIKGYSYLREAIQMVFE--DIELLGSV 189



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>ARR7_ARATH (Q9ZWS7) Two-component response regulator ARR7|
          Length = 206

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 21/92 (22%), Positives = 50/92 (54%)
 Frame = -1

Query: 505 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASD 326
           L  DG  G    +  + +LI+ D S+P + G++  +++K     ++ PV+ +++  +   
Sbjct: 63  LGLDGGKGASNLKDLKVNLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPR 122

Query: 325 REKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
            ++ +  G +++  KP++L   + +I QL+ R
Sbjct: 123 IQECLKEGAEEFLLKPVKLAD-VKRIKQLIMR 153



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>ARCA_HAEIN (P44918) Aerobic respiration control protein arcA homolog|
          Length = 236

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 29/98 (29%), Positives = 46/98 (46%)
 Frame = -1

Query: 523 KGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTA 344
           +G++V  A +G            +L++MD++LP  +G    R+L+ +  L   P+I LT 
Sbjct: 26  EGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLLLARELREELSL---PLIFLTG 82

Query: 343 HAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
                D+   +  G DDY TKP     L  +   LL R
Sbjct: 83  RDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHR 120



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>YDFI_BACSU (P96686) Sensory transduction protein ydfI|
          Length = 213

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 23/54 (42%), Positives = 32/54 (59%)
 Frame = -1

Query: 502 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAH 341
           A +G   V  A   +PD+ILMD+ +P M G EA +Q+K   E   TP+I LT +
Sbjct: 33  AENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIK---EKHDTPIIILTTY 83



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>Y0G0_VIBCH (Q9KL96) Hypothetical response regulatory protein VCA0850|
          Length = 261

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
 Frame = -1

Query: 511 VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVI-ALTAHAM 335
           V  A +G   +    + QPD++ +D+ +P MDG E  R+L   P++     I A   +A+
Sbjct: 35  VASAENGQIALQAIEQHQPDVVFLDIRMPKMDGIEVARRLLQQPKVPLVVFITAYDEYAV 94

Query: 334 ASDREKAIAAGCDDYDTKPIELPRLLS---KIAQLLER 230
           ++    AI     DY  KP+   RL S   K+ Q L R
Sbjct: 95  SAFETHAI-----DYLLKPLSSSRLASCCEKLQQQLRR 127



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>CHEB3_PSEAE (Q9HXT8) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 3 operon (EC 3.1.1.61)
          Length = 335

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 20/43 (46%), Positives = 30/43 (69%)
 Frame = -1

Query: 511 VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKAD 383
           V +A +GA  V     + PD++LMD+ +PVMDG EATR++ A+
Sbjct: 29  VWVASNGAEAVTQCAADTPDVVLMDLLMPVMDGVEATRRIMAE 71



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>CHEY_HELPJ (Q9ZM64) Chemotaxis protein cheY homolog|
          Length = 124

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
 Frame = -1

Query: 547 MLSRRLTRKGFEVVLA--HDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPEL 374
           ++   L+R G+E VL   H   A           +++ D ++P M+G +  ++++AD   
Sbjct: 15  IIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRADNRF 74

Query: 373 QQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236
           ++ P+I +T     ++   A+ AG ++Y  KP     L  K+  +L
Sbjct: 75  KEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 120



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>CHEV_BACSU (P37599) Chemotaxis protein cheV|
          Length = 303

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 23/77 (29%), Positives = 41/77 (53%)
 Frame = -1

Query: 478 DTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGC 299
           +T   +Q D+I+ D+ +P MDG   T+ LK +P+    PV+  ++      R +    G 
Sbjct: 222 ETDLSKQIDMIITDIEMPKMDGHRLTKLLKENPKSSDVPVMIFSSLITDDLRHRGEVVGA 281

Query: 298 DDYDTKPIELPRLLSKI 248
           D+  +KP E+  L+ K+
Sbjct: 282 DEQISKP-EISDLIKKV 297



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>LUXQ_VIBCH (Q9KLK7) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)|
           (EC 3.1.3.-)
          Length = 857

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = -1

Query: 520 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVI--ALT 347
           G +V    DG   ++  +    DL+LMD  LP +DG E TR +K   ++   PV+  A T
Sbjct: 753 GLDVSWVTDGLQAIEELKIHDYDLVLMDNQLPYLDGVETTRTIK---KVLHLPVVVYACT 809

Query: 346 AHAMASDREKAIAAGCDDYDTKPIE 272
           A  +   R+    AG +    KP++
Sbjct: 810 ADGLEETRQAFFHAGAEYVLVKPLK 834



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>DEGU_BREBE (P54662) Transcriptional regulatory protein degU|
          Length = 236

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
 Frame = -1

Query: 517 FEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTP---VIAL 350
           FEVV    DG   V+   +  PD+ILMD+++P ++G EATR L     +Q+ P   V+ L
Sbjct: 35  FEVVADGEDGENAVELVEKYNPDVILMDINMPKVNGVEATRDL-----IQRYPDVKVLVL 89

Query: 349 TAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248
           + H   S     +  G   Y  K ++   L+  +
Sbjct: 90  SIHDDESYVTHVLKTGASGYLLKEMDADALIEAV 123



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>DCTR_BACHD (Q9K998) Probable C4-dicarboxylate response regulator dctR|
          Length = 230

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
 Frame = -1

Query: 520 GFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTA 344
           GF +V     G  G+   R  QPDLIL+D+ +P  DG    +Q++   +     +IA+TA
Sbjct: 31  GFTIVGTTATGEEGMVKTRELQPDLILLDIFMPKQDGLSFIKQIR--EQYIDVDIIAVTA 88

Query: 343 HAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233
                  +  +  G  DY  KP    RL + + Q  E
Sbjct: 89  ANDTKTIKTLLRYGVMDYLVKPFTFERLKAALTQYEE 125



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>CHEB1_VIBPA (Q87MK5) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 1 operon (EC 3.1.1.61)
          Length = 369

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
 Frame = -1

Query: 505 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTA--HAMA 332
           +A +G   V+ A+  +PD+I MD+ +PVMDG  A R++ A      TP++  ++  H  A
Sbjct: 33  VAVNGREAVEKAKALKPDVITMDIEMPVMDGITAVREIMA---ASPTPILMFSSLTHDGA 89

Query: 331 SDREKAIAAGCDDYDTKPIE---------LPRLLSKIAQLLER*SHRREPWLPP*PSTA 182
                A+ AG  D+  K  E         +  L  ++ Q+  + +  R P   P  +T+
Sbjct: 90  KATLDALDAGALDFLPKKFEDIARNRDEAVSLLQQRVIQIASKRAFMRRPVARPAAATS 148



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>PRR1_SCHPO (O14283) Transcription factor prr1 (Pombe response regulator 1)|
          Length = 539

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
 Frame = -1

Query: 544 LSRRLTRKGF-----EVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADP 380
           LSRR+T K       +V +A DG   V+ A     DLILMD  LP +DG   T  ++   
Sbjct: 378 LSRRMTIKFLTSFDCQVDVAVDGIGAVNKANAGGFDLILMDFILPNLDGLSVTCLIRQYD 437

Query: 379 ELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236
               TP++A+T++   +D       G  D   KP     LL  + + L
Sbjct: 438 --HNTPILAITSNISMNDAVTYFNHGVTDLLVKPFTKLTLLQLLKKQL 483



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>CHEB1_VIBCH (Q9KQD8) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 1 operon (EC 3.1.1.61)
          Length = 377

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 28/78 (35%), Positives = 42/78 (53%)
 Frame = -1

Query: 505 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASD 326
           +A +G   V+ A R +PD+I MD+ +PVMDG  A R++ A+  +      +LT H  A  
Sbjct: 33  VAVNGKEAVEKAARLKPDVITMDIEMPVMDGISAVREIMANNPVPILMFSSLT-HDGAKA 91

Query: 325 REKAIAAGCDDYDTKPIE 272
              A+ AG  D+  K  E
Sbjct: 92  TLDALDAGALDFLPKKFE 109



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>CHEB1_PSEF5 (Q4KHL8) Chemotaxis response regulator protein-glutamate|
           methylesterase 1 (EC 3.1.1.61)
          Length = 336

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 22/43 (51%), Positives = 29/43 (67%)
 Frame = -1

Query: 511 VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKAD 383
           V +A +GA  V       PDLILMD+ +PVMDG EATR++ A+
Sbjct: 29  VWVATNGAEAVKYCAELTPDLILMDLIMPVMDGVEATRRIMAE 71



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>BVGS_BORPA (P40330) Virulence sensor protein bvgS precursor (EC 2.7.13.3)|
          Length = 1238

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
 Frame = -1

Query: 547  MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKAD---PE 377
            +L ++L   G  VV A  G A +        D+++ D ++P ++G+E  R+++A    P 
Sbjct: 987  LLRQQLDYLGQRVVAADSGEAALALWHEHAFDVVITDCNMPGINGYELARRIRAAEAAPG 1046

Query: 376  LQQTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
              +T  I    TA A   + ++  AAG DD   KPI +  L  ++ +   R
Sbjct: 1047 YGRTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNEAAAR 1097



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>BVGS_BORBR (P26762) Virulence sensor protein bvgS precursor (EC 2.7.13.3)|
          Length = 1238

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
 Frame = -1

Query: 547  MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKAD---PE 377
            +L ++L   G  VV A  G A +        D+++ D ++P ++G+E  R+++A    P 
Sbjct: 987  LLRQQLDYLGQRVVAADSGEAALALWHEHAFDVVITDCNMPGINGYELARRIRAAEAAPG 1046

Query: 376  LQQTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230
              +T  I    TA A   + ++  AAG DD   KPI +  L  ++ +   R
Sbjct: 1047 YGRTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNEAAAR 1097


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,344,388
Number of Sequences: 219361
Number of extensions: 1767591
Number of successful extensions: 7120
Number of sequences better than 10.0: 477
Number of HSP's better than 10.0 without gapping: 6608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6965
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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