ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart14f09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY157498.1| Synechococcus sp. PCC 7942 cosmid 4G8, complete s... 1015 0.0
2dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 1015 0.0
3gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 1015 0.0
4dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 72 2e-09
5dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 62 2e-06
6gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 60 8e-06
7emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 46 0.11
8dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 46 0.11
9ref|NM_001035273.1| Bos taurus single stranded DNA binding prote... 44 0.45
10gb|BC107552.1| Bos taurus single stranded DNA binding protein 4,... 44 0.45
11ref|XM_756932.1| Ustilago maydis 521 hypothetical protein (UM058... 42 1.8
12gb|AC122834.2| Mus musculus BAC clone RP23-183H9 from 15, comple... 42 1.8
13emb|BX294141.1| Pirellula sp. strain 1 complete genome; segment ... 42 1.8
14gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, c... 40 7.0
15gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 7.0
16gb|AC147078.2| Pan troglodytes BAC clone RP43-180L22 from 7, com... 40 7.0
17ref|XM_842921.1| Leishmania major strain Friedlin hypothetical p... 40 7.0
18ref|XM_818329.1| Trypanosoma brucei TREU927 RAB-interacting prot... 40 7.0
19gb|AC034145.5| Homo sapiens BAC clone RP11-127A24 from 7, comple... 40 7.0
20gb|AC119415.13| Medicago truncatula clone mth2-27n2, complete se... 40 7.0
21gb|AE008835.1| Salmonella typhimurium LT2, section 139 of 220 of... 40 7.0
22emb|AL627276.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 7.0
23emb|CR450777.5| Zebrafish DNA sequence from clone DKEY-16C7 in l... 40 7.0
24dbj|AB196987.1| Thermotoga maritima gene for alpha-L-arabinofura... 40 7.0
25gb|AC126789.20| Medicago truncatula clone mth2-36n23, complete s... 40 7.0
26gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 7.0
27gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 7.0
28dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 7.0
29dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete... 40 7.0
30gb|AF171069.1|AF171069 Salmonella typhimurium BarA sensor kinase... 40 7.0
31gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 7.0
32gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 40 7.0
33gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 7.0
34gb|AE000512.1| Thermotoga maritima MSB8, complete genome 40 7.0 
>gb|AY157498.1| Synechococcus sp. PCC 7942 cosmid 4G8, complete sequence
          Length = 31404

 Score = 1015 bits (512), Expect = 0.0
 Identities = 518/520 (99%)
 Strand = Plus / Minus

                                                                         
Query: 2     cactcagtcgggtattggtaatgacatccgataaggagatcgcagcgatcgctgtaaagg 61
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21341 cactcagtcgggtattggtaatgacatccgataaggagatcgcagcgatcgctgtaaagg 21282

                                                                         
Query: 62    ttgtccccactccaaacaacaggaattggcggcgcagcttcatggcagtcgagggttagg 121
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21281 ttgtccccactccaaacaacaggaattggcggcgcagcttcatggcagtcgagggttagg 21222

                                                                         
Query: 122   ggggcaaccaaggctcgcgacggtggctctagcgttcgagcaactgagcaattttactga 181
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21221 ggggcaaccaaggctcgcgacggtggctctagcgttcgagcaactgagcaattttactga 21162

                                                                         
Query: 182   gcaggcgcggcacctcgattggcttggtgtcgtagtcgtcacagcccgcggcgatcgcct 241
             |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21161 gcaggcgcggtagctcgattggcttggtgtcgtagtcgtcacagcccgcggcgatcgcct 21102

                                                                         
Query: 242   tttcgcgatcgctagccatggcgtgggcagtcagtgcaatcaccggcgtctgttgcagtt 301
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21101 tttcgcgatcgctagccatggcgtgggcagtcagtgcaatcaccggcgtctgttgcagtt 21042

                                                                         
Query: 302   caggatcggctttgagttggcgcgtggcctcccagccatccatcactggcaagctcatat 361
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21041 caggatcggctttgagttggcgcgtggcctcccagccatccatcactggcaagctcatat 20982

                                                                         
Query: 362   ccatcaaaatcagatccggttgctcgcgccgtgccgtatccacaccggcagctccatcgt 421
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20981 ccatcaaaatcagatccggttgctcgcgccgtgccgtatccacaccggcagctccatcgt 20922

                                                                         
Query: 422   gagccaagaccacttcaaaacccttgcgagtcagacggcgcgacaacatatcccaattgt 481
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20921 gagccaagaccacttcaaaacccttgcgagtcagacggcgcgacaacatatcccaattgt 20862

                                                     
Query: 482   cttcgttgtcttctaccaacaagattttagtcatccctaa 521
             ||||||||||||||||||||||||||||||||||||||||
Sbjct: 20861 cttcgttgtcttctaccaacaagattttagtcatccctaa 20822
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 1015 bits (512), Expect = 0.0
 Identities = 518/520 (99%)
 Strand = Plus / Minus

                                                                           
Query: 2       cactcagtcgggtattggtaatgacatccgataaggagatcgcagcgatcgctgtaaagg 61
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425776 cactcagtcgggtattggtaatgacatccgataaggagatcgcagcgatcgctgtaaagg 2425717

                                                                           
Query: 62      ttgtccccactccaaacaacaggaattggcggcgcagcttcatggcagtcgagggttagg 121
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425716 ttgtccccactccaaacaacaggaattggcggcgcagcttcatggcagtcgagggttagg 2425657

                                                                           
Query: 122     ggggcaaccaaggctcgcgacggtggctctagcgttcgagcaactgagcaattttactga 181
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425656 ggggcaaccaaggctcgcgacggtggctctagcgttcgagcaactgagcaattttactga 2425597

                                                                           
Query: 182     gcaggcgcggcacctcgattggcttggtgtcgtagtcgtcacagcccgcggcgatcgcct 241
               |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425596 gcaggcgcggtagctcgattggcttggtgtcgtagtcgtcacagcccgcggcgatcgcct 2425537

                                                                           
Query: 242     tttcgcgatcgctagccatggcgtgggcagtcagtgcaatcaccggcgtctgttgcagtt 301
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425536 tttcgcgatcgctagccatggcgtgggcagtcagtgcaatcaccggcgtctgttgcagtt 2425477

                                                                           
Query: 302     caggatcggctttgagttggcgcgtggcctcccagccatccatcactggcaagctcatat 361
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425476 caggatcggctttgagttggcgcgtggcctcccagccatccatcactggcaagctcatat 2425417

                                                                           
Query: 362     ccatcaaaatcagatccggttgctcgcgccgtgccgtatccacaccggcagctccatcgt 421
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425416 ccatcaaaatcagatccggttgctcgcgccgtgccgtatccacaccggcagctccatcgt 2425357

                                                                           
Query: 422     gagccaagaccacttcaaaacccttgcgagtcagacggcgcgacaacatatcccaattgt 481
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425356 gagccaagaccacttcaaaacccttgcgagtcagacggcgcgacaacatatcccaattgt 2425297

                                                       
Query: 482     cttcgttgtcttctaccaacaagattttagtcatccctaa 521
               ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425296 cttcgttgtcttctaccaacaagattttagtcatccctaa 2425257
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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 1015 bits (512), Expect = 0.0
 Identities = 518/520 (99%)
 Strand = Plus / Plus

                                                                           
Query: 2       cactcagtcgggtattggtaatgacatccgataaggagatcgcagcgatcgctgtaaagg 61
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891275 cactcagtcgggtattggtaatgacatccgataaggagatcgcagcgatcgctgtaaagg 1891334

                                                                           
Query: 62      ttgtccccactccaaacaacaggaattggcggcgcagcttcatggcagtcgagggttagg 121
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891335 ttgtccccactccaaacaacaggaattggcggcgcagcttcatggcagtcgagggttagg 1891394

                                                                           
Query: 122     ggggcaaccaaggctcgcgacggtggctctagcgttcgagcaactgagcaattttactga 181
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891395 ggggcaaccaaggctcgcgacggtggctctagcgttcgagcaactgagcaattttactga 1891454

                                                                           
Query: 182     gcaggcgcggcacctcgattggcttggtgtcgtagtcgtcacagcccgcggcgatcgcct 241
               |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891455 gcaggcgcggtagctcgattggcttggtgtcgtagtcgtcacagcccgcggcgatcgcct 1891514

                                                                           
Query: 242     tttcgcgatcgctagccatggcgtgggcagtcagtgcaatcaccggcgtctgttgcagtt 301
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891515 tttcgcgatcgctagccatggcgtgggcagtcagtgcaatcaccggcgtctgttgcagtt 1891574

                                                                           
Query: 302     caggatcggctttgagttggcgcgtggcctcccagccatccatcactggcaagctcatat 361
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891575 caggatcggctttgagttggcgcgtggcctcccagccatccatcactggcaagctcatat 1891634

                                                                           
Query: 362     ccatcaaaatcagatccggttgctcgcgccgtgccgtatccacaccggcagctccatcgt 421
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891635 ccatcaaaatcagatccggttgctcgcgccgtgccgtatccacaccggcagctccatcgt 1891694

                                                                           
Query: 422     gagccaagaccacttcaaaacccttgcgagtcagacggcgcgacaacatatcccaattgt 481
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891695 gagccaagaccacttcaaaacccttgcgagtcagacggcgcgacaacatatcccaattgt 1891754

                                                       
Query: 482     cttcgttgtcttctaccaacaagattttagtcatccctaa 521
               ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891755 cttcgttgtcttctaccaacaagattttagtcatccctaa 1891794
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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                           
Query: 202     ggcttggtgtcgtagtcgtcacagcccgcggcgatcgccttttcgcgatcgctagccatg 261
               |||||||| |||||||||||||| || |||||||||||| |||| || || || ||||||
Sbjct: 1811452 ggcttggtatcgtagtcgtcacaaccggcggcgatcgccctttctcggtcactggccatg 1811393

                                   
Query: 262     gcgtgggcagtcagtgcaat 281
               || ||||| ||||| |||||
Sbjct: 1811392 gcatgggcggtcagggcaat 1811373
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 73/87 (83%)
 Strand = Plus / Minus

                                                                           
Query: 195     ctcgattggcttggtgtcgtagtcgtcacagcccgcggcgatcgccttttcgcgatcgct 254
               |||||| |||||||| |||||| | || |||||||| || | |||||  ||||| |||||
Sbjct: 1190844 ctcgatgggcttggtttcgtagccatcgcagcccgccgccagcgcctgctcgcggtcgct 1190785

                                          
Query: 255     agccatggcgtgggcagtcagtgcaat 281
                |||||||||||||| ||||| |||||
Sbjct: 1190784 ggccatggcgtgggcggtcagggcaat 1190758
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                           
Query: 320     ggcgcgtggcctcccagccatccatcactggcaagctcatatccatcaaaatcagatccg 379
               ||||||| |||||||| |||||||  || |||| ||||||||||||||  ||||||||||
Sbjct: 2811243 ggcgcgttgcctcccacccatccaggaccggcaggctcatatccatcaggatcagatccg 2811184

                 
Query: 380     gt 381
               ||
Sbjct: 2811183 gt 2811182
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 331    tcccagccatccatcactggcaagctcatatccat 365
              |||||||| |||||||| |||| ||||||||||||
Sbjct: 367622 tcccagccgtccatcaccggcaggctcatatccat 367588
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                          
Query: 319     tggcgcgtggcctcccagccatccatcactggcaagctcatatccatcaaaatcagatc 377
               |||||||| |||||||| || || ||||| || | |||||| ||||||||||| |||||
Sbjct: 2473829 tggcgcgtcgcctcccaaccgtcgatcaccggtaggctcatgtccatcaaaatgagatc 2473771



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 195     ctcgattggcttggtgtcgtagtcgtcacagcc 227
               |||||| || || ||||||||||||||||||||
Sbjct: 2473953 ctcgatcggttttgtgtcgtagtcgtcacagcc 2473921
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>ref|NM_001035273.1| Bos taurus single stranded DNA binding protein 4 (SSBP4), mRNA
          Length = 1714

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 318  ttggcgcgtggcctcccagccatcca 343
            |||||||| |||||||||||||||||
Sbjct: 1498 ttggcgcggggcctcccagccatcca 1473
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>gb|BC107552.1| Bos taurus single stranded DNA binding protein 4, mRNA (cDNA clone
            MGC:128808 IMAGE:7989741), complete cds
          Length = 1714

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 318  ttggcgcgtggcctcccagccatcca 343
            |||||||| |||||||||||||||||
Sbjct: 1498 ttggcgcggggcctcccagccatcca 1473
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>ref|XM_756932.1| Ustilago maydis 521 hypothetical protein (UM05878.1) partial mRNA
          Length = 1446

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 244  tcgcgatcgctagccatggcg 264
            |||||||||||||||||||||
Sbjct: 1135 tcgcgatcgctagccatggcg 1155
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>gb|AC122834.2| Mus musculus BAC clone RP23-183H9 from 15, complete sequence
          Length = 191019

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 495   taccaacaagattttagtcat 515
             |||||||||||||||||||||
Sbjct: 17371 taccaacaagattttagtcat 17391
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>emb|BX294141.1| Pirellula sp. strain 1 complete genome; segment 9/24
          Length = 299350

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 229   gcggcgatcgccttttcgcgatcgc 253
             |||||||| ||||||||||||||||
Sbjct: 26602 gcggcgattgccttttcgcgatcgc 26578
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>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence
          Length = 1130447

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    gtcgtcacagcccgcggcga 235
              ||||||||||||||||||||
Sbjct: 236356 gtcgtcacagcccgcggcga 236337
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 229     gcggcgatcgccttttcgcgatcg 252
               ||||||||||||| ||||||||||
Sbjct: 3381177 gcggcgatcgcctcttcgcgatcg 3381200
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>gb|AC147078.2| Pan troglodytes BAC clone RP43-180L22 from 7, complete sequence
          Length = 217576

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 57     aaaggttgtccccactccaaacaa 80
              |||| |||||||||||||||||||
Sbjct: 115707 aaagattgtccccactccaaacaa 115730
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>ref|XM_842921.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0316)
            partial mRNA
          Length = 2967

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 216  gtcgtcacagcccgcggcga 235
            ||||||||||||||||||||
Sbjct: 1211 gtcgtcacagcccgcggcga 1192
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>ref|XM_818329.1| Trypanosoma brucei TREU927 RAB-interacting protein (Tb10.389.1570)
           partial mRNA
          Length = 684

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 67  cccactccaaacaacaggaa 86
           ||||||||||||||||||||
Sbjct: 504 cccactccaaacaacaggaa 485
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>gb|AC034145.5| Homo sapiens BAC clone RP11-127A24 from 7, complete sequence
          Length = 162658

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 57     aaaggttgtccccactccaaacaa 80
              |||| |||||||||||||||||||
Sbjct: 144752 aaagattgtccccactccaaacaa 144775
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>gb|AC119415.13| Medicago truncatula clone mth2-27n2, complete sequence
          Length = 139330

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 491    cttctaccaacaagatttta 510
              ||||||||||||||||||||
Sbjct: 110008 cttctaccaacaagatttta 110027
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>gb|AE008835.1| Salmonella typhimurium LT2, section 139 of 220 of the complete genome
          Length = 21791

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 358   atatccatcaaaatcagatc 377
             ||||||||||||||||||||
Sbjct: 13277 atatccatcaaaatcagatc 13258
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>emb|AL627276.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 12/20
          Length = 274050

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 358    atatccatcaaaatcagatc 377
              ||||||||||||||||||||
Sbjct: 262213 atatccatcaaaatcagatc 262194
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>emb|CR450777.5| Zebrafish DNA sequence from clone DKEY-16C7 in linkage group 8,
             complete sequence
          Length = 97291

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   tggcctcccagccatccatc 345
             ||||||||||||||||||||
Sbjct: 21522 tggcctcccagccatccatc 21541
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>dbj|AB196987.1| Thermotoga maritima gene for alpha-L-arabinofuranosidase, partial
           cds
          Length = 1452

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 216 gtcgtcacagcccgcggcgatcgc 239
           ||||||||||||| ||||||||||
Sbjct: 642 gtcgtcacagcccacggcgatcgc 619
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>gb|AC126789.20| Medicago truncatula clone mth2-36n23, complete sequence
          Length = 126875

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 491   cttctaccaacaagatttta 510
             ||||||||||||||||||||
Sbjct: 64167 cttctaccaacaagatttta 64186
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 483     ttcgttgtcttctaccaaca 502
               ||||||||||||||||||||
Sbjct: 3998962 ttcgttgtcttctaccaaca 3998981
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 358     atatccatcaaaatcagatc 377
               ||||||||||||||||||||
Sbjct: 2927676 atatccatcaaaatcagatc 2927657
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                       
Query: 214     tagtcgtcacagcccgcggcgatcgccttttcgcgatcgc 253
               |||||||||||||| |||  ||  ||||||||||||||||
Sbjct: 1796431 tagtcgtcacagccggcgaggagagccttttcgcgatcgc 1796392
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>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 116     gttaggggggcaaccaaggc 135
               ||||||||||||||||||||
Sbjct: 1162941 gttaggggggcaaccaaggc 1162922
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>gb|AF171069.1|AF171069 Salmonella typhimurium BarA sensor kinase (barA) gene, complete cds
          Length = 2961

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 358  atatccatcaaaatcagatc 377
            ||||||||||||||||||||
Sbjct: 2261 atatccatcaaaatcagatc 2242
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 358     atatccatcaaaatcagatc 377
               ||||||||||||||||||||
Sbjct: 2950108 atatccatcaaaatcagatc 2950089
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 358     atatccatcaaaatcagatc 377
               ||||||||||||||||||||
Sbjct: 3068381 atatccatcaaaatcagatc 3068362
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 325     gtggcctcccagccatccatcactggca 352
               ||||||| |||||| |||||||||||||
Sbjct: 1704590 gtggcctgccagccgtccatcactggca 1704563
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>gb|AE000512.1| Thermotoga maritima MSB8, complete genome
          Length = 1860725

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 216    gtcgtcacagcccgcggcgatcgc 239
              ||||||||||||| ||||||||||
Sbjct: 297259 gtcgtcacagcccacggcgatcgc 297236


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,273,535
Number of Sequences: 3902068
Number of extensions: 3273535
Number of successful extensions: 52575
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51823
Number of HSP's gapped (non-prelim): 752
length of query: 521
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 498
effective length of database: 17,143,297,704
effective search space: 8537362256592
effective search space used: 8537362256592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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