ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart14f06 |
|---|---|
| Clone Library Name | barley_pub |
>PLED_CAUCR (Q9A5I5) Response regulator pleD (Stalked cell| differentiation-controlling protein) [Includes: Diguanylate cyclase (EC 4.6.1.-) (DGC)] Length = 454 Score = 84.7 bits (208), Expect = 2e-16 Identities = 44/116 (37%), Positives = 70/116 (60%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+V+D E N +L +LT + +EV A DG + A R+ PD+IL+D+ +P MDG+ Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFT 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 R+LK DP + PV+ +TA DR + + +G D+ TKPI+ L +++ L Sbjct: 64 VCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSL 119 Score = 40.0 bits (92), Expect = 0.006 Identities = 29/124 (23%), Positives = 60/124 (48%) Frame = -3 Query: 619 GLGMTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPV 440 GLG ++L+V+DNE ++ L + V+ + A + DL++++ + Sbjct: 151 GLG-GRVLIVDDNERQAQRVAAELGVEHRPVIESDPEKAKISAGG--PVDLVIVNAAAKN 207 Query: 439 MDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 260 DG T L+++ +Q PV+A+ KA+ G +D ++PI+ L +++ Sbjct: 208 FDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKT 267 Query: 259 LLER 248 ++R Sbjct: 268 QIQR 271
>PILH_PSEAE (P43501) Protein pilH| Length = 121 Score = 84.3 bits (207), Expect = 3e-16 Identities = 45/119 (37%), Positives = 70/119 (58%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 M +IL+V+D+ L+ L + G +V+ A +G GV AR+E+PD++LMD+ +P ++G Sbjct: 1 MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNG 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 254 ++ATRQL D E PVI +T +D+ G DY TKP++ LL I +L Sbjct: 61 FQATRQLTKDAETSAIPVIIVTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVL 119
>BARA_ECOLI (P0AEC5) Signal transduction histidine-protein kinase barA (EC| 2.7.13.3) Length = 918 Score = 84.0 bits (206), Expect = 4e-16 Identities = 50/113 (44%), Positives = 64/113 (56%) Frame = -3 Query: 616 LGMTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVM 437 L MT ++ V+DN N ++ L V L G V+ A++ DLILMD+ +P M Sbjct: 666 LAMT-VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDM 724 Query: 436 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 278 DG A + P QQTPVIA+TAHAMA +EK + AG DY KPIE RL Sbjct: 725 DGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>BARA_ECOL6 (P0AEC6) Signal transduction histidine-protein kinase barA (EC| 2.7.13.3) Length = 918 Score = 84.0 bits (206), Expect = 4e-16 Identities = 50/113 (44%), Positives = 64/113 (56%) Frame = -3 Query: 616 LGMTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVM 437 L MT ++ V+DN N ++ L V L G V+ A++ DLILMD+ +P M Sbjct: 666 LAMT-VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDM 724 Query: 436 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 278 DG A + P QQTPVIA+TAHAMA +EK + AG DY KPIE RL Sbjct: 725 DGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>BARA_ECO57 (P0AEC7) Signal transduction histidine-protein kinase barA (EC| 2.7.13.3) Length = 918 Score = 84.0 bits (206), Expect = 4e-16 Identities = 50/113 (44%), Positives = 64/113 (56%) Frame = -3 Query: 616 LGMTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVM 437 L MT ++ V+DN N ++ L V L G V+ A++ DLILMD+ +P M Sbjct: 666 LAMT-VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDM 724 Query: 436 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 278 DG A + P QQTPVIA+TAHAMA +EK + AG DY KPIE RL Sbjct: 725 DGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>GACS_PSESY (P48027) Sensor protein gacS (EC 2.7.13.3)| Length = 907 Score = 82.8 bits (203), Expect = 8e-16 Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 3/107 (2%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 ++L V+DN N ++ L G EVV G A V+ ++E DL+LMD+ +P MDG + Sbjct: 658 RVLCVDDNPANLLLVQTLLEDMGAEVVAVEGGYAAVNAVQQEAFDLVLMDVQMPGMDGRQ 717 Query: 424 ATRQLKA-DPELQQT--PVIALTAHAMASDREKAIAAGCDDYDTKPI 293 AT ++A + E Q+ P++ALTAHAMA+++ + +G DDY TKPI Sbjct: 718 ATEAIRAWEAERNQSSLPIVALTAHAMANEKRSLLQSGMDDYLTKPI 764
>PRRA_MYCTU (P0A5Z6) Transcriptional regulatory protein prrA| Length = 233 Score = 82.4 bits (202), Expect = 1e-15 Identities = 45/124 (36%), Positives = 68/124 (54%) Frame = -3 Query: 619 GLGMTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPV 440 G+ ++L+V+D+ D L R L GFEV A DGA + +A +PD I++D+++PV Sbjct: 4 GVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPV 63 Query: 439 MDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 260 +DG L+A PV L+A + DR + AG DDY KP L L++++ Sbjct: 64 LDGVSVVTALRAMD--NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKA 121 Query: 259 LLER 248 LL R Sbjct: 122 LLRR 125
>PRRA_MYCBO (P0A5Z7) Transcriptional regulatory protein prrA| Length = 233 Score = 82.4 bits (202), Expect = 1e-15 Identities = 45/124 (36%), Positives = 68/124 (54%) Frame = -3 Query: 619 GLGMTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPV 440 G+ ++L+V+D+ D L R L GFEV A DGA + +A +PD I++D+++PV Sbjct: 4 GVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPV 63 Query: 439 MDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 260 +DG L+A PV L+A + DR + AG DDY KP L L++++ Sbjct: 64 LDGVSVVTALRAMD--NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKA 121 Query: 259 LLER 248 LL R Sbjct: 122 LLRR 125
>BARA_SHIFL (P59342) Signal transduction histidine-protein kinase barA (EC| 2.7.13.3) Length = 918 Score = 82.4 bits (202), Expect = 1e-15 Identities = 49/113 (43%), Positives = 64/113 (56%) Frame = -3 Query: 616 LGMTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVM 437 L MT ++ V+DN N ++ L V L G V+ A++ DLILMD+ +P M Sbjct: 666 LAMT-VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDM 724 Query: 436 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 278 DG A + P +QTPVIA+TAHAMA +EK + AG DY KPIE RL Sbjct: 725 DGIRACELIHQLPHQRQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>YYCF_BACSU (P37478) Transcriptional regulatory protein yycF| Length = 235 Score = 81.6 bits (200), Expect = 2e-15 Identities = 46/119 (38%), Positives = 67/119 (56%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KIL+V+D + D+L L ++G+EV AHDG V+ QPDLIL+D+ LP DG E Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVE 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+++ ++ P+I LTA D+ + G DDY TKP LL+++ L R Sbjct: 64 VCREVRKKYDM---PIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119
>PRRA_MYCLE (Q50136) Transcriptional regulatory protein prrA| Length = 233 Score = 81.6 bits (200), Expect = 2e-15 Identities = 45/124 (36%), Positives = 67/124 (54%) Frame = -3 Query: 619 GLGMTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPV 440 G+ ++L+V+D+ D L R L GFEV A DGA + A +PD I++D+++PV Sbjct: 4 GVSSPRVLVVDDDSDVLASLERGLRLSGFEVSTAIDGAEALRNATETRPDAIVLDINMPV 63 Query: 439 MDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 260 +DG L+A PV L+A + DR + AG DDY KP L L++++ Sbjct: 64 LDGVSVVTALRAMD--NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKA 121 Query: 259 LLER 248 LL R Sbjct: 122 LLRR 125
>ARLR_STAAN (Q99U73) Response regulator arlR| Length = 214 Score = 80.5 bits (197), Expect = 4e-15 Identities = 43/121 (35%), Positives = 70/121 (57%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 MT+IL+VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 250 R 248 R Sbjct: 118 R 118
>ARLR_STAAW (P0C001) Response regulator arlR| Length = 219 Score = 80.5 bits (197), Expect = 4e-15 Identities = 43/121 (35%), Positives = 70/121 (57%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 MT+IL+VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 250 R 248 R Sbjct: 118 R 118
>ARLR_STAAU (Q9KJN4) Response regulator arlR| Length = 219 Score = 80.5 bits (197), Expect = 4e-15 Identities = 43/121 (35%), Positives = 70/121 (57%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 MT+IL+VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 250 R 248 R Sbjct: 118 R 118
>ARLR_STAAS (Q6G9E6) Response regulator arlR| Length = 219 Score = 80.5 bits (197), Expect = 4e-15 Identities = 43/121 (35%), Positives = 70/121 (57%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 MT+IL+VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 250 R 248 R Sbjct: 118 R 118
>ARLR_STAAR (Q6GGZ3) Response regulator arlR| Length = 219 Score = 80.5 bits (197), Expect = 4e-15 Identities = 43/121 (35%), Positives = 70/121 (57%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 MT+IL+VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 250 R 248 R Sbjct: 118 R 118
>ARLR_STAAM (P0C000) Response regulator arlR| Length = 219 Score = 80.5 bits (197), Expect = 4e-15 Identities = 43/121 (35%), Positives = 70/121 (57%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 MT+IL+VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 250 R 248 R Sbjct: 118 R 118
>ARLR_STAAC (Q5HG04) Response regulator arlR| Length = 219 Score = 80.5 bits (197), Expect = 4e-15 Identities = 43/121 (35%), Positives = 70/121 (57%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 MT+IL+VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 250 R 248 R Sbjct: 118 R 118
>YXDJ_BACSU (P42421) Sensory transduction protein yxdJ| Length = 229 Score = 80.5 bits (197), Expect = 4e-15 Identities = 44/121 (36%), Positives = 72/121 (59%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 M KI++VED+ED +L L + G++ V+A D A +D RE+PD++L+D++LP DG Sbjct: 1 MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDG 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 + RQ++ + +P+I ++A + D+ AI G DDY KP +L+KI + Sbjct: 61 YYWCRQIR---QHSTSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIR 117 Query: 250 R 248 R Sbjct: 118 R 118
>PHOB_RHIME (Q52990) Phosphate regulon transcriptional regulatory protein phoB| Length = 227 Score = 80.1 bits (196), Expect = 5e-15 Identities = 43/121 (35%), Positives = 65/121 (53%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 + KI +VED E +L L +GFEV G + PDL+++D LP + G Sbjct: 2 LPKIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSG 61 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 E R+L+ PE ++ P+I LTA S+R + +A G DDY KP P L++++ +L Sbjct: 62 IELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLR 121 Query: 250 R 248 R Sbjct: 122 R 122
>YEDW_ECOLI (P76340) Probable transcriptional regulatory protein yedW| Length = 223 Score = 79.3 bits (194), Expect = 9e-15 Identities = 43/117 (36%), Positives = 69/117 (58%), Gaps = 1/117 (0%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KILL+EDN+ + +++ L+ G+ + DG G+ A ++ LI++D+ LP MDGW+ Sbjct: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI-AQL 257 + L+ +QTPVI LTA DR + + +G +DY KP LL+++ AQL Sbjct: 62 ILQTLRT---AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQL 115
>IRLR_BURPS (O31395) Transcriptional activator protein irlR| Length = 229 Score = 79.3 bits (194), Expect = 9e-15 Identities = 43/119 (36%), Positives = 61/119 (51%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+VED L + LT GF DG G+ A E+ DLI++D+ LP DGW Sbjct: 2 RILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGWT 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 +L+ TPV+ LTA DR K + G DDY KP + L++++ +L R Sbjct: 62 VLERLR---RAHSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRR 117
>PCOR_ECOLI (Q47456) Transcriptional regulatory protein pcoR| Length = 226 Score = 79.0 bits (193), Expect = 1e-14 Identities = 41/121 (33%), Positives = 67/121 (55%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 M +IL+VED + L + L +G++ L ++G G+ A + Q DLI++D+ LP +DG Sbjct: 1 MQRILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDG 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 W+ L+ + PV+ LTA D+ K + G DDY KP + L++++ LL Sbjct: 61 WQIISALRESG--HEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLR 118 Query: 250 R 248 R Sbjct: 119 R 119
>COPR_PSESM (Q02540) Transcriptional activator protein copR| Length = 227 Score = 78.6 bits (192), Expect = 2e-14 Identities = 45/119 (37%), Positives = 61/119 (51%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 K+L+ ED L + L GF V G VD A E DL+++D+ +P +DGWE Sbjct: 2 KLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGWE 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+L+ Q PV+ LTA DR K + G DDY KP L LL+++ LL R Sbjct: 62 VIRRLRTAG--QPVPVLFLTARDGVDDRVKGLELGADDYLVKPFALSELLARVRTLLRR 118
>PHOP_BACSU (P13792) Alkaline phosphatase synthesis transcriptional regulatory| protein phoP Length = 240 Score = 77.8 bits (190), Expect = 3e-14 Identities = 42/119 (35%), Positives = 66/119 (55%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KIL+V+D E +L L R G++V+ A DG + A E+PDLI++D+ LP +DG E Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 +QL+ + P++ LTA D+ + G DDY TKP + +++ +L R Sbjct: 64 VCKQLR--QQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120
>REGX3_MYCTU (Q11156) Sensory transduction protein regX3| Length = 227 Score = 77.8 bits (190), Expect = 3e-14 Identities = 44/121 (36%), Positives = 65/121 (53%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 MT +L+VED E D L+ L ++GFE + DG A + R D++L+D+ LP M G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 + +QL+A PVI +TA D+ + G DDY TKP L+++I +L Sbjct: 61 TDVCKQLRA---RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 250 R 248 R Sbjct: 118 R 118
>REGX3_MYCBO (O07130) Sensory transduction protein regX3| Length = 227 Score = 77.8 bits (190), Expect = 3e-14 Identities = 44/121 (36%), Positives = 65/121 (53%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 MT +L+VED E D L+ L ++GFE + DG A + R D++L+D+ LP M G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 + +QL+A PVI +TA D+ + G DDY TKP L+++I +L Sbjct: 61 TDVCKQLRA---RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 250 R 248 R Sbjct: 118 R 118
>REGX3_MYCSM (Q9F868) Sensory transduction protein regX3| Length = 228 Score = 77.8 bits (190), Expect = 3e-14 Identities = 43/121 (35%), Positives = 65/121 (53%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 MT +L+VED E D L+ L ++GFE + DG + + R D++L+D+ LP M G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSG 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 + +QL+A PVI +TA D+ + G DDY TKP L+++I +L Sbjct: 61 TDVCKQLRA---RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 250 R 248 R Sbjct: 118 R 118
>CUSR_ECOLI (P0ACZ8) Transcriptional regulatory protein cusR| Length = 227 Score = 77.4 bits (189), Expect = 3e-14 Identities = 43/119 (36%), Positives = 65/119 (54%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 K+L+VED + + L++ LT GF V LA +G G A DLI++D+ LP ++GW+ Sbjct: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R L++ + P++ LTA R K + G DDY KP LL+++ LL R Sbjct: 62 IVRMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>CUSR_ECOL6 (P0ACZ9) Transcriptional regulatory protein cusR| Length = 227 Score = 77.4 bits (189), Expect = 3e-14 Identities = 43/119 (36%), Positives = 65/119 (54%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 K+L+VED + + L++ LT GF V LA +G G A DLI++D+ LP ++GW+ Sbjct: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R L++ + P++ LTA R K + G DDY KP LL+++ LL R Sbjct: 62 IVRMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>CUSR_ECO57 (P0AD00) Transcriptional regulatory protein cusR| Length = 227 Score = 77.4 bits (189), Expect = 3e-14 Identities = 43/119 (36%), Positives = 65/119 (54%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 K+L+VED + + L++ LT GF V LA +G G A DLI++D+ LP ++GW+ Sbjct: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R L++ + P++ LTA R K + G DDY KP LL+++ LL R Sbjct: 62 IVRMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>YKOG_BACSU (O34903) Hypothetical sensory transduction protein ykoG| Length = 228 Score = 77.4 bits (189), Expect = 3e-14 Identities = 44/118 (37%), Positives = 64/118 (54%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 IL+VED E +L L +G+ V + H+G G+D A L+L+D+ LP + G E Sbjct: 6 ILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLEV 65 Query: 421 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+L+ QTPVI LTA D+ + G +DY TKP E+ LL++I L + Sbjct: 66 LRRLRKTD--SQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQ 121
>CPXR_SHIFL (P0AE90) Transcriptional regulatory protein cpxR| Length = 232 Score = 77.4 bits (189), Expect = 3e-14 Identities = 49/127 (38%), Positives = 70/127 (55%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 M KILLV+D+ + +L L +GF V++AHDG +D + DL+L+D+ +P +G Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 + LKA + QTPVI LTA DR + G DDY KP L+++I +L Sbjct: 60 IDT---LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 250 R*SHRRE 230 R SH E Sbjct: 117 R-SHWSE 122
>CPXR_ECOLI (P0AE88) Transcriptional regulatory protein cpxR| Length = 232 Score = 77.4 bits (189), Expect = 3e-14 Identities = 49/127 (38%), Positives = 70/127 (55%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 M KILLV+D+ + +L L +GF V++AHDG +D + DL+L+D+ +P +G Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 + LKA + QTPVI LTA DR + G DDY KP L+++I +L Sbjct: 60 IDT---LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 250 R*SHRRE 230 R SH E Sbjct: 117 R-SHWSE 122
>CPXR_ECO57 (P0AE89) Transcriptional regulatory protein cpxR| Length = 232 Score = 77.4 bits (189), Expect = 3e-14 Identities = 49/127 (38%), Positives = 70/127 (55%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 M KILLV+D+ + +L L +GF V++AHDG +D + DL+L+D+ +P +G Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 + LKA + QTPVI LTA DR + G DDY KP L+++I +L Sbjct: 60 IDT---LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 250 R*SHRRE 230 R SH E Sbjct: 117 R-SHWSE 122
>CZCR_RALME (Q44006) Transcriptional activator protein czcR| Length = 225 Score = 77.4 bits (189), Expect = 3e-14 Identities = 41/119 (34%), Positives = 66/119 (55%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 ++L+VED + L + L+ GF V +A++G G+ A D+I++D+ LP MDGW Sbjct: 2 RVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGWT 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 + +++ E TPV+ LTA +DR + G DDY KP LL++I + L + Sbjct: 62 VIKSIRSKSE---TPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQ 117
>SILR_SALTY (Q9ZHD3) Probable transcriptional regulatory protein silR| Length = 228 Score = 77.0 bits (188), Expect = 4e-14 Identities = 44/119 (36%), Positives = 65/119 (54%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KIL+VED+ + LS+ LT GF V A +G G A + DL+++D+ LP ++GW+ Sbjct: 2 KILIVEDDIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWD 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R L++ + PV+ LTA R K + G DDY KP LL+++ LL R Sbjct: 62 IIRMLRSAG--KGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>YSO1_PLEBO (P51586) Hypothetical 14.6 kDa protein in sodA1 3'region (ORF131)| Length = 131 Score = 77.0 bits (188), Expect = 4e-14 Identities = 41/119 (34%), Positives = 69/119 (57%) Frame = -3 Query: 616 LGMTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVM 437 L IL+V+D+ D D+L L +G V +A + + RE P L++ D+++P M Sbjct: 4 LAQMDILVVDDDPDTRDLLRFMLEDEGAIVTVAPNAKEALSLLERELPKLLVSDVAMPEM 63 Query: 436 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 260 DG+E +++ P+ + P IALTA+A DR+ A+ +G +DY TKP++ L+ + Q Sbjct: 64 DGFELIGRVRELPKGETLPAIALTAYAREEDRQAALRSGFNDYLTKPVDPLELIRLVQQ 122
>YCF27_PORAE (P28835) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 240 Score = 75.5 bits (184), Expect = 1e-13 Identities = 39/119 (32%), Positives = 69/119 (57%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KIL+++D +L RL+ G++V+ A DG + +RE P+L+++D+ +P +DG+ Sbjct: 5 KILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFKREHPNLVVLDLMMPKLDGYG 64 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 ++L+ + ++ P+I LTA + SDR + G DDY KP L ++I +L R Sbjct: 65 VCQELRKESDV---PIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRR 120
>YCLJ_BACSU (P94413) Hypothetical sensory transduction protein yclJ| Length = 227 Score = 74.3 bits (181), Expect = 3e-13 Identities = 43/119 (36%), Positives = 60/119 (50%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KIL++EDN M ++GFE HDG G E DLI++D+ LP MDG Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+++ E P+I LTA SD+ G DDY TKP L+++I ++ R Sbjct: 62 ICRKIR---ETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRR 117
>YCF27_GUITH (O78428) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 254 Score = 73.9 bits (180), Expect = 4e-13 Identities = 38/119 (31%), Positives = 67/119 (56%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 K+L+V+D +L RL+ G+ VV A DG ++ +E PD++++D+ +P +DG+ Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 ++++ D ++ P+I LTA +DR + G DDY KP L ++I +L R Sbjct: 76 VCQEIRKDSDV---PIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRR 131
>TCTD_SALTY (P22104) Transcriptional regulatory protein tctD| Length = 224 Score = 73.9 bits (180), Expect = 4e-13 Identities = 43/119 (36%), Positives = 63/119 (52%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 ++LL EDN + L + L + GF V DG A E L ++D+++P MDG E Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGLE 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 ++L+ Q PV+ LTA + +DR K + G DDY KP EL L +++ LL R Sbjct: 62 VVQRLRKRG--QTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRR 118
>YCF27_CYAPA (P48259) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 239 Score = 73.9 bits (180), Expect = 4e-13 Identities = 41/119 (34%), Positives = 67/119 (56%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KIL+V+D +L RL+ G+EVV A DG + + E P+L+++D+ +P +DG+ Sbjct: 7 KILVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLEHPNLVVLDVMMPKLDGYG 66 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 ++L+ + ++ P+I LTA +DR + G DDY KP L ++I LL R Sbjct: 67 VCQELRKESDI---PIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRR 122
>PFER_PSEAE (Q04803) Transcriptional activator protein pfeR| Length = 305 Score = 73.9 bits (180), Expect = 4e-13 Identities = 43/119 (36%), Positives = 63/119 (52%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 ++LLVED+ + L R+GF V + DG+ G++ A RE DL+L+D+ LP +DG Sbjct: 79 RLLLVEDDPRLREDLDAHFRRRGFRVTVCGDGSHGLEAAGREAFDLVLLDIMLPGLDGLA 138 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 L+ + Q TPV+ ++A DR G DDY KP L L ++ LL R Sbjct: 139 LLESLRRE---QATPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAELDARTDALLRR 194
>AFSQ1_STRCO (Q04942) Transcriptional regulatory protein afsQ1| Length = 225 Score = 73.9 bits (180), Expect = 4e-13 Identities = 43/121 (35%), Positives = 67/121 (55%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 M +LL+ED++ L LTR+G V A G G+ R ++PDLI++D+ LP +DG Sbjct: 1 MPSLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDG 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 +E R+++ Q P+I LTA D + +G DDY KP++ L ++I +L Sbjct: 61 FEVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117 Query: 250 R 248 R Sbjct: 118 R 118
>YRKP_BACSU (P54443) Hypothetical sensory transduction protein yrkP| Length = 231 Score = 73.6 bits (179), Expect = 5e-13 Identities = 40/119 (33%), Positives = 67/119 (56%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+VED+ED D+L LTR G+EV+ A DG + + DL+++D+ +P + G E Sbjct: 4 RILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQLV-NDSLDLVILDIMMPGISGIE 62 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 + ++ + P++ LTA + D+ + + AG DDY TKP L +++ L R Sbjct: 63 TCQHIR---KSSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRR 118
>YCF27_PORPU (P51358) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 243 Score = 73.2 bits (178), Expect = 6e-13 Identities = 40/119 (33%), Positives = 66/119 (55%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KIL+V+D +L RLT G+EV+ A +G + R+E P L+++D+ +P +DG+ Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 ++L+ + ++ P+I LTA DR + G DDY KP L ++I +L R Sbjct: 67 VCQELRKESDV---PIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122
>PHOB_SHIFL (P45607) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 72.4 bits (176), Expect = 1e-12 Identities = 41/119 (34%), Positives = 62/119 (52%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+VED +M+ L + GF+ V A D + V+ PDLIL+D LP G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 + LK + + PV+ LTA DR + + G DDY TKP L+++I ++ R Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>PHOB_SHIDY (P45606) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 72.4 bits (176), Expect = 1e-12 Identities = 41/119 (34%), Positives = 62/119 (52%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+VED +M+ L + GF+ V A D + V+ PDLIL+D LP G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 + LK + + PV+ LTA DR + + G DDY TKP L+++I ++ R Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>PHOB_ECOLI (P0AFJ5) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 72.4 bits (176), Expect = 1e-12 Identities = 41/119 (34%), Positives = 62/119 (52%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+VED +M+ L + GF+ V A D + V+ PDLIL+D LP G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 + LK + + PV+ LTA DR + + G DDY TKP L+++I ++ R Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>PHOB_ECO57 (P0AFJ6) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 72.4 bits (176), Expect = 1e-12 Identities = 41/119 (34%), Positives = 62/119 (52%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+VED +M+ L + GF+ V A D + V+ PDLIL+D LP G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 + LK + + PV+ LTA DR + + G DDY TKP L+++I ++ R Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>PHOB_KLEPN (P45605) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 72.0 bits (175), Expect = 1e-12 Identities = 41/119 (34%), Positives = 62/119 (52%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+VED +M+ L + GF+ V A D + V+ PDLIL+D LP G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQ 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 + LK + + PV+ LTA DR + + G DDY TKP L+++I ++ R Sbjct: 64 FIKLLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>MTRA_MYCTU (P0A5Z4) DNA-binding response regulator mtrA| Length = 225 Score = 70.5 bits (171), Expect = 4e-12 Identities = 39/119 (32%), Positives = 65/119 (54%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+V+D+ +ML+ L +GF+ + DG + R +PDL+L+D+ LP M+G + Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R L+AD P++ LTA D + +G DDY KP + L++++ L R Sbjct: 64 VCRVLRAD---SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 119
>MTRA_MYCPA (Q93CB8) DNA-binding response regulator mtrA| Length = 225 Score = 70.5 bits (171), Expect = 4e-12 Identities = 39/119 (32%), Positives = 65/119 (54%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+V+D+ +ML+ L +GF+ + DG + R +PDL+L+D+ LP M+G + Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R L+AD P++ LTA D + +G DDY KP + L++++ L R Sbjct: 64 VCRVLRAD---SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 119
>MTRA_MYCLE (Q9CCJ2) DNA-binding response regulator mtrA| Length = 225 Score = 70.5 bits (171), Expect = 4e-12 Identities = 39/119 (32%), Positives = 65/119 (54%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+V+D+ +ML+ L +GF+ + DG + R +PDL+L+D+ LP M+G + Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R L+AD P++ LTA D + +G DDY KP + L++++ L R Sbjct: 64 VCRVLRAD---SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 119
>MTRA_MYCBO (P0A5Z5) DNA-binding response regulator mtrA| Length = 225 Score = 70.5 bits (171), Expect = 4e-12 Identities = 39/119 (32%), Positives = 65/119 (54%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+V+D+ +ML+ L +GF+ + DG + R +PDL+L+D+ LP M+G + Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R L+AD P++ LTA D + +G DDY KP + L++++ L R Sbjct: 64 VCRVLRAD---SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 119
>MCS4_SCHPO (P87323) Response regulator mcs4 (Mitotic catastrophe suppressor 4)| Length = 522 Score = 70.1 bits (170), Expect = 5e-12 Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 26/140 (18%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 +L+VEDN N +L + ++ +A DG ++ +++ LILMD+ LP M G E Sbjct: 364 VLIVEDNIINQKILETFMKKRNISSEVAKDGLEALEKWKKKSFHLILMDIQLPTMSGIEV 423 Query: 421 TRQLKADPELQ------------------------QTPVI--ALTAHAMASDREKAIAAG 320 T++++ L Q+PVI ALTA ++ +DR +A+AAG Sbjct: 424 TQEIRRLERLNAIGVGAPKLTQPIPEKDQLNENKFQSPVIIVALTASSLMADRNEALAAG 483 Query: 319 CDDYDTKPIELPRLLSKIAQ 260 C+D+ TKP+ L L KI + Sbjct: 484 CNDFLTKPVSLVWLEKKITE 503
>ATOC_ECOLI (Q06065) Acetoacetate metabolism regulatory protein atoC| (Ornithine/arginine decarboxylase inhibitor) (Ornithine decarboxylase antizyme) Length = 461 Score = 70.1 bits (170), Expect = 5e-12 Identities = 40/127 (31%), Positives = 71/127 (55%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 + +IL+V+D ++ MLS +GFE A++G + PD++LMD+ +P MDG Sbjct: 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDG 63 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 +A +++++ +TPVI +TA+A +A+ G DY KP +L L + + L+ Sbjct: 64 IKALKEMRSHE--TRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 Query: 250 R*SHRRE 230 S ++E Sbjct: 122 LQSMKKE 128
>YCF27_GALSU (P28257) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 255 Score = 69.7 bits (169), Expect = 7e-12 Identities = 37/119 (31%), Positives = 67/119 (56%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KIL+ +D +L RL+ G+EV+ A DG + + +E P+L+++D+ +P +DG+ Sbjct: 9 KILIADDESSIRRILETRLSIIGYEVLTAPDGRSALFLFHKEHPNLVVLDVMMPKIDGYG 68 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 ++++ + ++ P+I LTA +DR + G DDY KP L ++I +L R Sbjct: 69 VCQEIRKESDI---PIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRR 124
>CREB_ECOLI (P08368) Transcriptional regulatory protein creB| Length = 229 Score = 69.3 bits (168), Expect = 9e-12 Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 + LVED + D L L ++GF V + G +D AR++ PD++++D+ LP + G+E Sbjct: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 Query: 421 TRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 RQL A P L PV+ LTA + DR + G DDY KP + +++ LL R Sbjct: 66 CRQLLALHPAL---PVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>YCF29_PORPU (P51343) Probable transcriptional regulator ycf29| Length = 209 Score = 69.3 bits (168), Expect = 9e-12 Identities = 40/118 (33%), Positives = 64/118 (54%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 ++LVE++ + L +GF V +A +G A + + DLI+ D+ +P++DG+E Sbjct: 5 LMLVENDTVLSKAIQEYLIDQGFNVDIALNGLEAFQLANKYKFDLIISDIIMPIIDGYEL 64 Query: 421 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 +L+ +L + PVI LTA M DR K GC Y +KP + L+S I L+ R Sbjct: 65 LEKLRKIDKLAKIPVIFLTAKGMTKDRIKGYNMGCYGYLSKPFDPEELVSLIKNLIYR 122
>EVGS_ECOLI (P30855) Sensor protein evgS precursor (EC 2.7.13.3)| Length = 1197 Score = 68.9 bits (167), Expect = 1e-11 Identities = 39/115 (33%), Positives = 68/115 (59%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 IL+ +D+ N +L R+L G++V A DG + + DL++ D+++P MDG+E Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 421 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 TR+L+ + P+ LTA+A A++REK ++ G + KP+ L L + ++QL Sbjct: 1021 TRKLR--EQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQL 1073
>MAK1_SCHPO (Q9P7Q7) Peroxide stress-activated histidine kinase mak1 (EC| 2.7.13.3) (Mcs4-associated kinase 1) (His-Asp phosphorelay kinase phk3) Length = 1639 Score = 68.6 bits (166), Expect = 2e-11 Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 6/122 (4%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPD---LILMDMSLPVMDG 431 +LL EDN N ++SR L R G + + DG V+ +RE+P+ LILMD+ +PVMDG Sbjct: 1508 VLLAEDNIINIKVISRYLERIGVKFKVTMDGLQCVEEWKREKPNFYSLILMDLQMPVMDG 1567 Query: 430 WEA---TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 260 ++A R+ + + + + P++AL+A+A+ +G D Y KPI L L I+ Sbjct: 1568 YQACNEIRKYELENDYPKVPIVALSANALPHVVLSCKDSGFDSYLAKPITLQHLSLIISG 1627 Query: 259 LL 254 +L Sbjct: 1628 IL 1629
>YFHA_ECOLI (P0AFU4) Hypothetical protein yfhA (ORF-2)| Length = 444 Score = 68.6 bits (166), Expect = 2e-11 Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 +LLV+D+ +L RLT +G+ VV A GA G+ RE+ DL++ D+ + MDG + Sbjct: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 Query: 421 TRQL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 ++ K P + PVI LTAH D A G + TKP++ L I LE+ Sbjct: 68 FAEIQKVQPGM---PVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123
>YFHA_ECO57 (P0AFU5) Hypothetical protein yfhA| Length = 444 Score = 68.6 bits (166), Expect = 2e-11 Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 1/119 (0%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 +LLV+D+ +L RLT +G+ VV A GA G+ RE+ DL++ D+ + MDG + Sbjct: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 Query: 421 TRQL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 ++ K P + PVI LTAH D A G + TKP++ L I LE+ Sbjct: 68 FAEIQKVQPGM---PVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123
>QSEB_HAEIN (P45337) Transcriptional regulatory protein qseB| Length = 221 Score = 67.8 bits (164), Expect = 3e-11 Identities = 39/119 (32%), Positives = 64/119 (53%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +ILL+ED+ + L LT+ GF V DG G+ D +++D++LP +DG E Sbjct: 2 RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 +Q +++ Q PV+ LTA +R K + +G DDY KP L + +++ L+ R Sbjct: 62 VLQQWRSNH--QDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRR 118
>KDPE_ECOLI (P21866) KDP operon transcriptional regulatory protein kdpE| Length = 225 Score = 67.8 bits (164), Expect = 3e-11 Identities = 45/128 (35%), Positives = 64/128 (50%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 MT +L+VED + L L G V A G+ A +PDLI++D+ LP DG Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 E R L+ + PVI L+A + SD+ A+ AG DDY +KP + L +++ L Sbjct: 61 IEFIRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 Query: 250 R*SHRREP 227 R S P Sbjct: 118 RHSATTAP 125
>RCSC_SALTI (Q56128) Sensor protein rcsC (EC 2.7.13.3) (Capsular synthesis| regulator component C) Length = 948 Score = 67.0 bits (162), Expect = 5e-11 Identities = 36/119 (30%), Positives = 72/119 (60%), Gaps = 1/119 (0%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 IL+V+D+ N +L+ +L G++ A+DG ++ + D++L D+++P MDG+ Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886 Query: 421 TRQLKADPELQQT-PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 T++++ +L T PV+ +TA+A+A ++++ + +G D +KP+ L L +A ER Sbjct: 887 TQRIR---QLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDALKQTLAVYAER 942
>CHVI_AGRTU (Q07783) Transcriptional regulatory protein chvI| Length = 241 Score = 67.0 bits (162), Expect = 5e-11 Identities = 42/125 (33%), Positives = 63/125 (50%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 M I LV+D+ + +S L R+G+ V DGA+ VD P L + D+ +P MDG Sbjct: 1 MQTIALVDDDRNILTSVSIALEREGYRVETYTDGASAVDGLIARPPQLAIFDIKMPRMDG 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 E R+L+ ++ PVI LT+ D + G DD+ TKP L+ ++ +L Sbjct: 61 MELLRRLRQKSDI---PVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILR 117 Query: 250 R*SHR 236 R S R Sbjct: 118 RASSR 122
>DLTR_STRA5 (P0A4I0) Transcriptional regulatory protein dltR| Length = 224 Score = 66.6 bits (161), Expect = 6e-11 Identities = 38/113 (33%), Positives = 61/113 (53%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 ++L+VED + + + L KG+ V LA DG G++ DL+L+D+ LP G Sbjct: 2 RLLVVEDEKSIAEAIQALLADKGYSVDLAFDGDDGLEYILTGLYDLVLLDIMLPKRSGLS 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 266 ++++ +TP+I LTA + D+ + G DDY TKP E LL++I Sbjct: 62 VLKRVREAG--LETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARI 112
>DLTR_STRA3 (P0A4H9) Transcriptional regulatory protein dltR| Length = 224 Score = 66.6 bits (161), Expect = 6e-11 Identities = 38/113 (33%), Positives = 61/113 (53%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 ++L+VED + + + L KG+ V LA DG G++ DL+L+D+ LP G Sbjct: 2 RLLVVEDEKSIAEAIQALLADKGYSVDLAFDGDDGLEYILTGLYDLVLLDIMLPKRSGLS 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 266 ++++ +TP+I LTA + D+ + G DDY TKP E LL++I Sbjct: 62 VLKRVREAG--LETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARI 112
>RPRY_BACFR (Q9AE24) Transcriptional regulatory protein rprY| Length = 236 Score = 66.6 bits (161), Expect = 6e-11 Identities = 39/119 (32%), Positives = 61/119 (51%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +ILL ED+E+ +L L KG+ L DG AG + + DL + D+ +P DG+ Sbjct: 9 RILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGFKAFLKNKYDLCVFDVMMPKKDGFT 68 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 ++++A + P+I LTA + D + G DDY TKP + L +I +L R Sbjct: 69 LAQEVRA--ANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAILRR 125
>RESD_BACSU (P35163) Transcriptional regulatory protein resD| Length = 240 Score = 66.2 bits (160), Expect = 8e-11 Identities = 40/120 (33%), Positives = 62/120 (51%) Frame = -3 Query: 607 TKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 428 TKIL+V+D +L L R+ + + A +G + DLIL+D+ +P DG Sbjct: 7 TKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGI 66 Query: 427 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 E RQ++ E + TP+I LTA ++R + AG DDY KP ++ ++ LL R Sbjct: 67 EVCRQIR---EKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123
>EVGS_ECO57 (P58402) Sensor protein evgS precursor (EC 2.7.13.3)| Length = 1197 Score = 66.2 bits (160), Expect = 8e-11 Identities = 38/115 (33%), Positives = 67/115 (58%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 IL+ +D+ N +L R+L G++V A DG + + DL++ D+++P +DG+E Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNVDGFEL 1020 Query: 421 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 TR+L+ + P+ LTA+A A++REK + G + KP+ L L + ++QL Sbjct: 1021 TRKLR--EQNSSLPIWGLTANAQANEREKGLNCGMNLCLFKPLTLDVLKTHLSQL 1073
>RCSC_SALTY (P58662) Sensor protein rcsC (EC 2.7.13.3) (Capsular synthesis| regulator component C) Length = 948 Score = 66.2 bits (160), Expect = 8e-11 Identities = 36/119 (30%), Positives = 72/119 (60%), Gaps = 1/119 (0%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 IL+V+D+ N +L+ +L G++ A+DG ++ + D++L D+++P MDG+ Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886 Query: 421 TRQLKADPELQQT-PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 T++++ +L T PV+ +TA+A+A ++++ + +G D +KP+ L L +A ER Sbjct: 887 TQRIR---QLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDVLKQTLAVYAER 942
>SRRA_STAAW (Q7A0U4) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 66.2 bits (160), Expect = 8e-11 Identities = 39/119 (32%), Positives = 63/119 (52%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAU (Q9L524) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 66.2 bits (160), Expect = 8e-11 Identities = 39/119 (32%), Positives = 63/119 (52%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAS (Q6G972) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 66.2 bits (160), Expect = 8e-11 Identities = 39/119 (32%), Positives = 63/119 (52%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAR (Q6GGK6) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 66.2 bits (160), Expect = 8e-11 Identities = 39/119 (32%), Positives = 63/119 (52%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAN (Q7A5H6) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 66.2 bits (160), Expect = 8e-11 Identities = 39/119 (32%), Positives = 63/119 (52%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAM (Q7A2R6) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 66.2 bits (160), Expect = 8e-11 Identities = 39/119 (32%), Positives = 63/119 (52%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAC (Q5HFT0) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 66.2 bits (160), Expect = 8e-11 Identities = 39/119 (32%), Positives = 63/119 (52%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SLN1_YEAST (P39928) Osmolarity two-component system protein SLN1 (EC 2.7.13.3)| Length = 1220 Score = 66.2 bits (160), Expect = 8e-11 Identities = 40/115 (34%), Positives = 70/115 (60%), Gaps = 6/115 (5%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVD-----TARREQPDLILMDMSLP 443 KIL+VEDN N +++ R L +G E + LA DG D T++ E ++I MD+ +P Sbjct: 1089 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMP 1148 Query: 442 VMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 278 +DG +T+ ++ D +P++ALTA A S+ ++ + +G + + +KPI+ P+L Sbjct: 1149 KVDGLLSTKMIRRDLGYT-SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKL 1202
>CTRA_CAUCR (Q45994) Cell cycle transcriptional regulator ctrA (Response| regulator sokA) Length = 231 Score = 65.9 bits (159), Expect = 1e-10 Identities = 37/119 (31%), Positives = 60/119 (50%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 ++LL+ED+ + L +GF V G GVD + DLIL+D++LP M G + Sbjct: 2 RVLLIEDDSATAQTIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLNLPDMSGID 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R L+ TP++ L+ + + K A G DDY TKP ++++I ++ R Sbjct: 62 VLRTLRV--AKINTPIMILSGSSEIDTKVKTFAGGADDYMTKPFHKDEMIARIHAVVRR 118
>RCAC_FREDI (Q01473) Protein rcaC| Length = 651 Score = 65.5 bits (158), Expect = 1e-10 Identities = 42/128 (32%), Positives = 69/128 (53%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KILLVED++ +L++ LT + V + DG G + DLI++D+ LP +DG Sbjct: 2 KILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGIS 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER* 245 ++ +A + P++ LTA + + + + AG DDY KP + L+++I LL R Sbjct: 62 LCKRFRA--QGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRG 119 Query: 244 SHRREPWL 221 S+ P L Sbjct: 120 SNNPFPLL 127 Score = 63.9 bits (154), Expect = 4e-10 Identities = 34/119 (28%), Positives = 67/119 (56%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 K+++++D++D L L GF+V D + PD +++D+++P ++G+E Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 + L++DP Q+ PV+ L+ + + +A A G DDY KP++ L ++I + L+R Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRILRRLQR 645
>CYAB_STIAU (P40138) Adenylate cyclase 2 (EC 4.6.1.1) (ATP pyrophosphate-lyase| 2) (Adenylyl cyclase 2) (AC2) Length = 352 Score = 65.5 bits (158), Expect = 1e-10 Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 2/124 (1%) Frame = -3 Query: 613 GMTKILLVEDNEDNWDMLSRRLTRKG--FEVVLAHDGAAGVDTARREQPDLILMDMSLPV 440 G ++++V+D+ D + L G +EV+ D ++ + QP ++L D+ +P Sbjct: 4 GHHRVMVVDDSPLACDFVKEGLEALGLGYEVMCFQDPYEALEQVGKVQPAIVLSDLDMPG 63 Query: 439 MDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 260 +DG E +LK P +Q PVI LTA+ ++R K + AG DDY K + L ++I Sbjct: 64 IDGLELCWRLKESPS-RQVPVIILTANDSEAERVKGLRAGADDYVNKSASMAELSARIES 122 Query: 259 LLER 248 ++ R Sbjct: 123 VMRR 126
>RCSC_ECOLI (P14376) Sensor kinase protein rcsC (EC 2.7.13.3) (Capsular synthesis| regulator component C) Length = 949 Score = 64.7 bits (156), Expect = 2e-10 Identities = 35/119 (29%), Positives = 71/119 (59%), Gaps = 1/119 (0%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 IL+V+D+ N +L+ +L G++ A+DG ++ + D++L D+++P MDG+ Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 421 TRQLKADPELQQT-PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 T++++ +L T PVI +TA+A+A ++++ + +G D +KP+ L + + ER Sbjct: 887 TQRIR---QLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAER 942
>PHOB_PSEAE (P23620) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 64.7 bits (156), Expect = 2e-10 Identities = 38/118 (32%), Positives = 59/118 (50%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 IL+V+D +M++ L G+E + A + +PDLIL+D LP G E Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGIEL 65 Query: 421 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+LK D P+I LTA ++ + + G DDY TKP L++++ +L R Sbjct: 66 ARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123
>LUXQ_VIBVY (Q7MD16) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 857 Score = 64.3 bits (155), Expect = 3e-10 Identities = 39/105 (37%), Positives = 57/105 (54%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 K+LLVEDN N +L + V DG ++ + DLILMD LP M G E Sbjct: 735 KVLLVEDNHTNAFILKAFCQKYQMSVEWVQDGTQALEKLKEHAFDLILMDNQLPKMGGIE 794 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 290 ATR+++ +L TP+ A TA A S +++ ++AG + KPI+ Sbjct: 795 ATREIRETLKL-GTPIYACTADAQESTKQEFLSAGANRVIVKPIK 838
>LUXQ_VIBVU (Q8D5Z6) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 857 Score = 64.3 bits (155), Expect = 3e-10 Identities = 39/105 (37%), Positives = 57/105 (54%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 K+LLVEDN N +L + V DG ++ + DLILMD LP M G E Sbjct: 735 KVLLVEDNHTNAFILKAFCQKYQMSVEWVQDGTQALEKLKEHAFDLILMDNQLPKMGGIE 794 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 290 ATR+++ +L TP+ A TA A S +++ ++AG + KPI+ Sbjct: 795 ATREIRETLKL-GTPIYACTADAQESTKQEFLSAGANRVIVKPIK 838
>YCBL_BACSU (P42244) Hypothetical sensory transduction protein ycbL| Length = 226 Score = 64.3 bits (155), Expect = 3e-10 Identities = 36/117 (30%), Positives = 62/117 (52%) Frame = -3 Query: 598 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 419 +LVED+ +M+ LT++GF +V A DG G+ ++ DL+L+D+ LP ++G + Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDF- 59 Query: 418 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 LK E PV+ ++A D+ + G DDY KP + L +++ + R Sbjct: 60 --LKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRR 114
>SSK1_YEAST (Q07084) Osomolarity two-component system protein SSK1| Length = 712 Score = 63.5 bits (153), Expect = 5e-10 Identities = 45/140 (32%), Positives = 63/140 (45%), Gaps = 26/140 (18%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 +L+VEDN N +L L + LA +G V+ + LI MD+ LPV+ G EA Sbjct: 506 VLIVEDNVINQAILGSFLRKHKISYKLAKNGQEAVNIWKEGGLHLIFMDLQLPVLSGIEA 565 Query: 421 TRQLK------------------------ADPELQQTPVI--ALTAHAMASDREKAIAAG 320 +Q++ Q PVI ALTA D+ KA+ +G Sbjct: 566 AKQIRDFEKQNGIGIQKSLNNSHSNLEKGTSKRFSQAPVIIVALTASNSQMDKRKALLSG 625 Query: 319 CDDYDTKPIELPRLLSKIAQ 260 C+DY TKP+ L L KI + Sbjct: 626 CNDYLTKPVNLHWLSKKITE 645
>SPHR_SYNP7 (P39663) Alkaline phosphatase synthesis transcriptional regulatory| protein sphR Length = 257 Score = 63.5 bits (153), Expect = 5e-10 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 9/129 (6%) Frame = -3 Query: 607 TKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARR---------EQPDLILMD 455 ++IL+VED DM++ L ++GF V +A DG ++ R E PDL+++D Sbjct: 24 SRILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLD 83 Query: 454 MSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLL 275 + LP ++G + R L+ P++ L+A +DR + G DDY TKP L+ Sbjct: 84 LMLPAVNGLDFCRLLRRQGVT--VPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELV 141 Query: 274 SKIAQLLER 248 ++ LL R Sbjct: 142 ARCRALLRR 150
>CHVI_RHIME (P50350) Transcriptional regulatory protein chvI| Length = 240 Score = 63.2 bits (152), Expect = 7e-10 Identities = 39/125 (31%), Positives = 64/125 (51%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 M I LV+D+ + +S L +G++V DGA+ ++ P L + D+ +P MDG Sbjct: 1 MQTIALVDDDRNILTSVSIALEAEGYKVETYTDGASALEGLLARPPQLAIFDIKMPRMDG 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 E R+L+ +L PVI LT+ D + G DD+ TKP L+ ++ +L Sbjct: 61 MELLRRLRQKSDL---PVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILR 117 Query: 250 R*SHR 236 R ++R Sbjct: 118 RAANR 122
>PHOB_HAEIN (P45189) Phosphate regulon transcriptional regulatory protein phoB| Length = 231 Score = 63.2 bits (152), Expect = 7e-10 Identities = 40/119 (33%), Positives = 62/119 (52%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KIL+VED +M++ L++K ++V+ A D ++ + E P LIL+D LP G + Sbjct: 4 KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIK-ENPKLILLDWMLPGRSGIQ 62 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 + +K P+I LTA + D + AG DDY TKP LL++I + R Sbjct: 63 FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRR 121
>ARCB_SHIFL (P0AEC4) Aerobic respiration control sensor protein arcB (EC| 2.7.13.3) Length = 778 Score = 63.2 bits (152), Expect = 7e-10 Identities = 40/113 (35%), Positives = 66/113 (58%), Gaps = 1/113 (0%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 +LLVED E N + L + G V +A G A ++ + + DL+L+D+ LP M G + Sbjct: 528 VLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDI 587 Query: 421 TRQL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 266 +R+L K P P++ALTA+ + D+++ + AG DD +KP+ +P L + I Sbjct: 588 SRELTKRYPREDLPPLVALTANVL-KDKQEYLNAGMDDVLSKPLSVPALTAMI 639
>ARCB_ECOLI (P0AEC3) Aerobic respiration control sensor protein arcB (EC| 2.7.13.3) Length = 778 Score = 63.2 bits (152), Expect = 7e-10 Identities = 40/113 (35%), Positives = 66/113 (58%), Gaps = 1/113 (0%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 +LLVED E N + L + G V +A G A ++ + + DL+L+D+ LP M G + Sbjct: 528 VLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDI 587 Query: 421 TRQL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 266 +R+L K P P++ALTA+ + D+++ + AG DD +KP+ +P L + I Sbjct: 588 SRELTKRYPREDLPPLVALTANVL-KDKQEYLNAGMDDVLSKPLSVPALTAMI 639
>ARCB_ECO57 (P58363) Aerobic respiration control sensor protein arcB (EC| 2.7.13.3) Length = 778 Score = 63.2 bits (152), Expect = 7e-10 Identities = 40/113 (35%), Positives = 66/113 (58%), Gaps = 1/113 (0%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 +LLVED E N + L + G V +A G A ++ + + DL+L+D+ LP M G + Sbjct: 528 VLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDI 587 Query: 421 TRQL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 266 +R+L K P P++ALTA+ + D+++ + AG DD +KP+ +P L + I Sbjct: 588 SRELTKRYPREDLPPLVALTANVL-KDKQEYLNAGMDDVLSKPLSVPALTAMI 639
>TCSA_EMENI (Q9P896) Two-component system protein A (EC 2.7.13.3)| Length = 719 Score = 62.8 bits (151), Expect = 9e-10 Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 7/116 (6%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRK-GFEVVLAHDGA-AGVDTAR--REQP---DLILMDMSLP 443 +LLVEDN N T + GF+ + DGA G + R R++P D+ILMD+S+P Sbjct: 561 VLLVEDNIVNHTRYVEAPTYQFGFQRI---DGAWNGAEAVRMVRQKPLSYDIILMDVSMP 617 Query: 442 VMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLL 275 V+DG AT Q++ D L P+IA+T +AM D E IA G DD KP+ +LL Sbjct: 618 VLDGLAATEQIR-DMGLTM-PIIAITGNAMKGDAETYIAQGMDDCICKPVHRDQLL 671
>TORR_ECOLI (P38684) TorCAD operon transcriptional regulatory protein torR| Length = 230 Score = 62.0 bits (149), Expect = 1e-09 Identities = 39/118 (33%), Positives = 61/118 (51%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 I++VED L T++G+ V + GA + + + DLIL+D++LP +G Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 Query: 421 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 TR L+ E +I +T + DR + G DDY TKP+EL L+ ++ LL R Sbjct: 65 TRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119
>QSEB_SALTY (P66795) Transcriptional regulatory protein qseB| Length = 219 Score = 62.0 bits (149), Expect = 1e-09 Identities = 37/119 (31%), Positives = 64/119 (53%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +ILLVED+ D + L++ GF V +G G + D +++D++LP MDG + Sbjct: 2 RILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRD 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+ + + +Q PV+ LTA ++R + + G DDY KP L + +++ L+ R Sbjct: 62 ILREWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRR 118
>QSEB_SALTI (P66796) Transcriptional regulatory protein qseB| Length = 219 Score = 62.0 bits (149), Expect = 1e-09 Identities = 37/119 (31%), Positives = 64/119 (53%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +ILLVED+ D + L++ GF V +G G + D +++D++LP MDG + Sbjct: 2 RILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRD 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+ + + +Q PV+ LTA ++R + + G DDY KP L + +++ L+ R Sbjct: 62 ILREWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRR 118
>SP0A_CLODI (P52938) Stage 0 sporulation protein A homolog| Length = 274 Score = 62.0 bits (149), Expect = 1e-09 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 2/159 (1%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDG 431 KI+L +DN+D +L L+ + +L A DG +D ++ QPDL+++D+ +P +DG Sbjct: 10 KIVLADDNKDFCQVLKEYLSNEDDIDILGIAKDGIEALDLVKKTQPDLLILDVIMPHLDG 69 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 +L + +I L+A + AI G D Y KP + +++I +L+ Sbjct: 70 LGVIEKLNTMDIPKMPKIIVLSAVGQDKITQSAINLGADYYIVKPFDFVVFINRIRELVS 129 Query: 250 R*SHRREPWLPP*PSTAMKLRRQFLLFGVGTTFTAIAAI 134 + EP P P ++ R + VG T I I Sbjct: 130 NRVTQVEP--KPRPVQETQMTRSDFVKNVGNIETEITNI 166
>CHEY_BACSU (P24072) Chemotaxis protein cheY homolog| Length = 119 Score = 62.0 bits (149), Expect = 1e-09 Identities = 41/118 (34%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGW 428 +IL+V+D M+ L + GFEVV A +GA V+ + PDL+ MD+++P MDG Sbjct: 3 RILIVDDAAFMRMMIKDILVKNGFEVVAEAENGAQAVEKYKEHSPDLVTMDITMPEMDGI 62 Query: 427 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 254 A +++K Q +I +A S AI AG D+ KP + R+L I + L Sbjct: 63 TALKEIKQID--AQARIIMCSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTL 118
>TORR_ECO57 (P58357) TorCAD operon transcriptional regulatory protein torR| Length = 230 Score = 61.6 bits (148), Expect = 2e-09 Identities = 39/118 (33%), Positives = 61/118 (51%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 I++VED L T++G+ V + GA + + + DLIL+D++LP +G Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLML 64 Query: 421 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 TR L+ E +I +T + DR + G DDY TKP+EL L+ ++ LL R Sbjct: 65 TRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119
>CPXR_HAEIN (P44895) Transcriptional regulatory protein cpxR homolog| Length = 227 Score = 61.6 bits (148), Expect = 2e-09 Identities = 37/121 (30%), Positives = 67/121 (55%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 M+K+LLV+D+ + ++LS L +GF+V A++G + E L+L+D+ +P ++G Sbjct: 1 MSKLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLN-ESYKLVLLDVMMPKLNG 59 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 E ++++ ++ PV+ LTA DR + G DD KP L+++I +L Sbjct: 60 IETLKEIR---KVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILR 116 Query: 250 R 248 R Sbjct: 117 R 117
>GTCR_ANEMI (Q44929) Response regulator gtcR| Length = 242 Score = 61.2 bits (147), Expect = 2e-09 Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 1/129 (0%) Frame = -3 Query: 610 MTKILLVEDNEDNW-DMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMD 434 M+K +L+ D+E ++L L R+ + ++ A+DG + R+ DL ++D+ +P +D Sbjct: 1 MSKTILIADDEPEIIELLKLFLERESYRIIEAYDGEQAWNYIRQHPVDLAIIDIMMPALD 60 Query: 433 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 254 G++ ++L + +L PVI L+A SD+ + G DD+ +KP +++I L Sbjct: 61 GFQLIKRLTNEYKL---PVIILSAKNRDSDKILGLGLGADDFISKPFNPLEAVARIQAQL 117 Query: 253 ER*SHRREP 227 R EP Sbjct: 118 RRAFEFNEP 126
>QSEB_ECOLI (P52076) Transcriptional regulatory protein qseB| Length = 219 Score = 60.8 bits (146), Expect = 3e-09 Identities = 36/119 (30%), Positives = 63/119 (52%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +ILL+ED+ D + L++ GF V G G + D +++D++LP MDG + Sbjct: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+ + + Q+ PV+ LTA ++R + + G DDY KP L + +++ L+ R Sbjct: 62 ILREWR--EKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118
>QSEB_ECO57 (Q8XBS3) Transcriptional regulatory protein qseB| Length = 219 Score = 60.5 bits (145), Expect = 4e-09 Identities = 36/119 (30%), Positives = 62/119 (52%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +ILL+ED+ D + L++ GF V G G + D +++D++LP MDG + Sbjct: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+ + + Q+ PV+ LTA +R + + G DDY KP L + +++ L+ R Sbjct: 62 ILREWR--EKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118
>YCF27_CYACA (Q9TLQ4) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 249 Score = 60.5 bits (145), Expect = 4e-09 Identities = 34/118 (28%), Positives = 61/118 (51%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 +L+V+D + +L RLT G+ V A +G + DLI++D+ +P +DG+ Sbjct: 14 LLIVDDENNIRKILQTRLTLLGYSVSTACNGEEALKIFTTHSIDLIILDVMMPKLDGYGV 73 Query: 421 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 ++++ + ++ P+I LTA D+ + G DDY KP L ++I +L R Sbjct: 74 CQEIRKESDI---PIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELEARIQSILRR 128
>PHOP_SALTY (P14146) Virulence transcriptional regulatory protein phoP| Length = 224 Score = 60.1 bits (144), Expect = 6e-09 Identities = 47/195 (24%), Positives = 84/195 (43%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 M ++L+VEDN L +L G +V A D PD+ ++D+ LP DG Sbjct: 1 MMRVLVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPDEDG 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 R+ ++ PV+ LTA D+ + +++G DDY TKP + +++++ L+ Sbjct: 61 LSLIRRWRSSDV--SLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118 Query: 250 R*SHRREPWLPP*PSTAMKLRRQFLLFGVGTTFTAIAAISLSDVITNTRLSESSREEVQS 71 R S + P RR+ + TA + +I N S + Sbjct: 119 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178 Query: 70 LLQEFDIKLIDTVDL 26 L + +++ T+D+ Sbjct: 179 LYPDAELRESHTIDV 193
>PHOP_SALTI (Q8Z7H2) Virulence transcriptional regulatory protein phoP| Length = 224 Score = 60.1 bits (144), Expect = 6e-09 Identities = 47/195 (24%), Positives = 84/195 (43%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 M ++L+VEDN L +L G +V A D PD+ ++D+ LP DG Sbjct: 1 MMRVLVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPDEDG 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 R+ ++ PV+ LTA D+ + +++G DDY TKP + +++++ L+ Sbjct: 61 LSLIRRWRSSDV--SLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118 Query: 250 R*SHRREPWLPP*PSTAMKLRRQFLLFGVGTTFTAIAAISLSDVITNTRLSESSREEVQS 71 R S + P RR+ + TA + +I N S + Sbjct: 119 RNSGLASQVINISPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178 Query: 70 LLQEFDIKLIDTVDL 26 L + +++ T+D+ Sbjct: 179 LYPDAELRESHTIDV 193
>PHOP_SALPA (Q5PMJ1) Virulence transcriptional regulatory protein phoP| Length = 224 Score = 60.1 bits (144), Expect = 6e-09 Identities = 47/195 (24%), Positives = 84/195 (43%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 M ++L+VEDN L +L G +V A D PD+ ++D+ LP DG Sbjct: 1 MMRVLVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPDEDG 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 R+ ++ PV+ LTA D+ + +++G DDY TKP + +++++ L+ Sbjct: 61 LSLIRRWRSSDV--SLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118 Query: 250 R*SHRREPWLPP*PSTAMKLRRQFLLFGVGTTFTAIAAISLSDVITNTRLSESSREEVQS 71 R S + P RR+ + TA + +I N S + Sbjct: 119 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178 Query: 70 LLQEFDIKLIDTVDL 26 L + +++ T+D+ Sbjct: 179 LYPDAELRESHTIDV 193
>SKN7_YEAST (P38889) Transcription factor SKN7 (Peroxide sensitivity protein| POS9) Length = 622 Score = 59.7 bits (143), Expect = 7e-09 Identities = 40/129 (31%), Positives = 67/129 (51%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 +LLVED+ + + S+ L + G V + DG + + T + + DL+LMD+ +P +DG A Sbjct: 379 VLLVEDDAVSIQLCSKFLRKYGCTVQVVSDGLSAISTLEKYRYDLVLMDIVMPNLDGATA 438 Query: 421 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*S 242 T +++ +TP+IA+T + M D + G +D KP L S + + L+ Sbjct: 439 TSIVRSFD--NETPIIAMTGNIMNQDLITYLQHGMNDILAKPFTRDDLHSILIRYLKDRI 496 Query: 241 HRREPWLPP 215 E LPP Sbjct: 497 PLCEQQLPP 505
>CUTR_STRLI (P0A4I2) Transcriptional regulatory protein cutR (Defective melC1| suppressor protein) Length = 217 Score = 59.7 bits (143), Expect = 7e-09 Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 ++L+VED + D ++ L R+ V + +DGAA ++ D++++D LP++ G + Sbjct: 2 RVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGDD 61 Query: 424 ATRQLKADPEL-QQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R++ EL T V+ LTA SDR + + G DDY KP L++++ L R Sbjct: 62 VCRKI---VELGMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRR 118
>CUTR_STRCO (P0A4I1) Transcriptional regulatory protein cutR (Defective melC1| suppressor protein) Length = 217 Score = 59.7 bits (143), Expect = 7e-09 Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 1/120 (0%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 ++L+VED + D ++ L R+ V + +DGAA ++ D++++D LP++ G + Sbjct: 2 RVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGDD 61 Query: 424 ATRQLKADPEL-QQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R++ EL T V+ LTA SDR + + G DDY KP L++++ L R Sbjct: 62 VCRKI---VELGMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRR 118
>ZRAR_KLEOX (Q9APD9) Transcriptional regulatory protein zraR| Length = 443 Score = 59.3 bits (142), Expect = 9e-09 Identities = 34/117 (29%), Positives = 66/117 (56%), Gaps = 1/117 (0%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 IL+V+D+ + +L L G+ V LA++G ++ R + DL+L D+ + MDG E Sbjct: 8 ILVVDDDISHCTILQALLRGWGYRVALANNGLQALEKVREKVFDLVLCDIRMAEMDGIET 67 Query: 421 TRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 254 +++K +P + PV+ +TA++ +A+ +G DY KP++ +L +++ L Sbjct: 68 LKEIKTFNPSI---PVLIMTAYSSVDTAVEALKSGALDYLIKPLDFDKLQLTLSEAL 121
>VANR_ENTFA (Q47744) Regulatory protein vanRB| Length = 220 Score = 59.3 bits (142), Expect = 9e-09 Identities = 37/119 (31%), Positives = 62/119 (52%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +ILLVED++ + + L +EV DG L+++D+ LP M+G E Sbjct: 4 RILLVEDDDHICNTVRAFLAEARYEVDACTDGNEAHTKFYENTYQLVILDIMLPGMNGHE 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+ +A + TP++ +TA + ++ +A A DDY TKP ++ LL ++ LL R Sbjct: 64 LLREFRAQND---TPILMMTALSDDENQIRAFDAEADDYVTKPFKMRILLKRVEALLRR 119
>PHOP_SHIFL (Q83RR0) Virulence transcriptional regulatory protein phoP| Length = 223 Score = 59.3 bits (142), Expect = 9e-09 Identities = 45/193 (23%), Positives = 84/193 (43%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 ++L+VEDN L ++ G +V A D PD+ ++D+ LP DG Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLS 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER* 245 R+ +++ P++ LTA D+ + ++AG DDY TKP + +++++ L+ R Sbjct: 62 LIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 Query: 244 SHRREPWLPP*PSTAMKLRRQFLLFGVGTTFTAIAAISLSDVITNTRLSESSREEVQSLL 65 S + P RR+ + TA + +I N S + L Sbjct: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 Query: 64 QEFDIKLIDTVDL 26 + +++ T+D+ Sbjct: 180 PDAELRESHTIDV 192
>PHOP_ECOL6 (Q8CXZ9) Transcriptional regulatory protein phoP| Length = 223 Score = 59.3 bits (142), Expect = 9e-09 Identities = 45/193 (23%), Positives = 84/193 (43%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 ++L+VEDN L ++ G +V A D PD+ ++D+ LP DG Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLS 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER* 245 R+ +++ P++ LTA D+ + ++AG DDY TKP + +++++ L+ R Sbjct: 62 LIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 Query: 244 SHRREPWLPP*PSTAMKLRRQFLLFGVGTTFTAIAAISLSDVITNTRLSESSREEVQSLL 65 S + P RR+ + TA + +I N S + L Sbjct: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 Query: 64 QEFDIKLIDTVDL 26 + +++ T+D+ Sbjct: 180 PDAELRESHTIDV 192
>ZRAR_SALTY (P25852) Transcriptional regulatory protein zraR| Length = 441 Score = 59.3 bits (142), Expect = 9e-09 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 1/129 (0%) Frame = -3 Query: 613 GMTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMD 434 G IL+V+D+ + +L L G+ V LA+ G + R + DL+L D+ + MD Sbjct: 4 GKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMD 63 Query: 433 GWEATRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 G +++KA +P + P++ +TA + +A+ AG DY KP++ RL + + Sbjct: 64 GIATLKEIKALNPAI---PILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKA 120 Query: 256 LER*SHRRE 230 L +H RE Sbjct: 121 L---AHTRE 126
>ZRAR_SALTI (Q8Z333) Transcriptional regulatory protein zraR| Length = 441 Score = 59.3 bits (142), Expect = 9e-09 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 1/129 (0%) Frame = -3 Query: 613 GMTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMD 434 G IL+V+D+ + +L L G+ V LA+ G + R + DL+L D+ + MD Sbjct: 4 GKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMD 63 Query: 433 GWEATRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 G +++KA +P + P++ +TA + +A+ AG DY KP++ RL + + Sbjct: 64 GIATLKEIKALNPAI---PILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKA 120 Query: 256 LER*SHRRE 230 L +H RE Sbjct: 121 L---AHTRE 126
>PHOP_ECOLI (P23836) Transcriptional regulatory protein phoP| Length = 223 Score = 58.9 bits (141), Expect = 1e-08 Identities = 45/193 (23%), Positives = 84/193 (43%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 ++L+VEDN L ++ G +V A D PD+ ++D+ LP DG Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER* 245 R+ +++ P++ LTA D+ + ++AG DDY TKP + +++++ L+ R Sbjct: 62 LIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 Query: 244 SHRREPWLPP*PSTAMKLRRQFLLFGVGTTFTAIAAISLSDVITNTRLSESSREEVQSLL 65 S + P RR+ + TA + +I N S + L Sbjct: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 Query: 64 QEFDIKLIDTVDL 26 + +++ T+D+ Sbjct: 180 PDAELRESHTIDV 192
>PETR_RHOCA (P31079) Protein petR| Length = 245 Score = 58.9 bits (141), Expect = 1e-08 Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAG--VDTARREQPDLILMDMSLPVMDGW 428 +L+V+D+E +L + L R GF V D A + T + +LI++D+ +P DG Sbjct: 9 LLIVDDDERIRGLLQKFLIRNGFLVTAGRDAAHARRLFTLSGLEFNLIVLDVMMPGEDGL 68 Query: 427 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDY--DTKPIELPRLLSKIAQLL 254 TR L+ TP++ LTA +R + + AG DDY KP E LL +I +L Sbjct: 69 SLTRDLRTK---MATPILLLTARGETRERIEGLEAGADDYLFTPKPFEPKELLLRINAIL 125 Query: 253 ER 248 R Sbjct: 126 RR 127
>PHOP_SALCH (Q57QC3) Virulence transcriptional regulatory protein phoP| Length = 224 Score = 58.2 bits (139), Expect = 2e-08 Identities = 46/195 (23%), Positives = 83/195 (42%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 M ++L+VEDN L +L G +V D PD+ ++D+ LP DG Sbjct: 1 MMRVLVVEDNALLRHHLKVQLQDSGHQVDATEDAREADYYLNEHLPDIAIVDLGLPDEDG 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 R+ ++ PV+ LTA D+ + +++G DDY TKP + +++++ L+ Sbjct: 61 LSLIRRWRSSDI--SLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118 Query: 250 R*SHRREPWLPP*PSTAMKLRRQFLLFGVGTTFTAIAAISLSDVITNTRLSESSREEVQS 71 R S + P RR+ + TA + +I N S + Sbjct: 119 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178 Query: 70 LLQEFDIKLIDTVDL 26 L + +++ T+D+ Sbjct: 179 LYPDAELRESHTIDV 193
>CIAR_STRR6 (P0A4H8) Transcriptional regulatory protein ciaR| Length = 224 Score = 58.2 bits (139), Expect = 2e-08 Identities = 43/125 (34%), Positives = 61/125 (48%), Gaps = 4/125 (3%) Frame = -3 Query: 610 MTKILLVEDN----EDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLP 443 M KILLVED+ +D L +V+ DG G+ A DLIL+D+ LP Sbjct: 1 MIKILLVEDDLGLSNSVFDFLDDFA-----DVMQVFDGEEGLYEAESGVYDLILLDLMLP 55 Query: 442 VMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIA 263 +G++ ++L+ TPV+ +TA D+ G DDY TKP L L +I Sbjct: 56 EKNGFQVLKELREKGIT--TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQ 113 Query: 262 QLLER 248 LL+R Sbjct: 114 ALLKR 118
>CIAR_STRPN (P0A4H7) Transcriptional regulatory protein ciaR| Length = 224 Score = 58.2 bits (139), Expect = 2e-08 Identities = 43/125 (34%), Positives = 61/125 (48%), Gaps = 4/125 (3%) Frame = -3 Query: 610 MTKILLVEDN----EDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLP 443 M KILLVED+ +D L +V+ DG G+ A DLIL+D+ LP Sbjct: 1 MIKILLVEDDLGLSNSVFDFLDDFA-----DVMQVFDGEEGLYEAESGVYDLILLDLMLP 55 Query: 442 VMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIA 263 +G++ ++L+ TPV+ +TA D+ G DDY TKP L L +I Sbjct: 56 EKNGFQVLKELREKGIT--TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQ 113 Query: 262 QLLER 248 LL+R Sbjct: 114 ALLKR 118
>OMPR_SHIFL (P0AA21) Transcriptional regulatory protein ompR| Length = 239 Score = 58.2 bits (139), Expect = 2e-08 Identities = 39/119 (32%), Positives = 60/119 (50%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KIL+V+D+ +L R LT +GF+V + RE L+++D+ LP DG Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>OMPR_SALTY (P0AA19) Transcriptional regulatory protein ompR| Length = 239 Score = 58.2 bits (139), Expect = 2e-08 Identities = 39/119 (32%), Positives = 60/119 (50%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KIL+V+D+ +L R LT +GF+V + RE L+++D+ LP DG Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>OMPR_SALTI (P0AA20) Transcriptional regulatory protein ompR| Length = 239 Score = 58.2 bits (139), Expect = 2e-08 Identities = 39/119 (32%), Positives = 60/119 (50%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KIL+V+D+ +L R LT +GF+V + RE L+++D+ LP DG Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>OMPR_ECOLI (P0AA16) Transcriptional regulatory protein ompR| Length = 239 Score = 58.2 bits (139), Expect = 2e-08 Identities = 39/119 (32%), Positives = 60/119 (50%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KIL+V+D+ +L R LT +GF+V + RE L+++D+ LP DG Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>OMPR_ECOL6 (P0AA17) Transcriptional regulatory protein ompR| Length = 239 Score = 58.2 bits (139), Expect = 2e-08 Identities = 39/119 (32%), Positives = 60/119 (50%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KIL+V+D+ +L R LT +GF+V + RE L+++D+ LP DG Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>OMPR_ECO57 (P0AA18) Transcriptional regulatory protein ompR| Length = 239 Score = 58.2 bits (139), Expect = 2e-08 Identities = 39/119 (32%), Positives = 60/119 (50%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KIL+V+D+ +L R LT +GF+V + RE L+++D+ LP DG Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>YCF29_CYAPA (P48359) Probable transcriptional regulator ycf29| Length = 210 Score = 58.2 bits (139), Expect = 2e-08 Identities = 37/121 (30%), Positives = 58/121 (47%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 M IL+++ + + L LT GF V + D +R++ DLI+ D+ +P M G Sbjct: 1 MINILILDTDIGIRNSLKLYLTEIGFHVEESTCVDQAWDILKRKKIDLIICDIIMPGMGG 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 + QL+ + + PVI LT + DR GCD Y +KP + L+ I +L Sbjct: 61 FNFLHQLRLNTDYCTLPVILLTTRGLTQDRIIGYKTGCDSYISKPFNIEELVVIIEGVLN 120 Query: 250 R 248 R Sbjct: 121 R 121
>BCER_BACHD (Q9K621) Sensory transduction protein bceR| Length = 231 Score = 58.2 bits (139), Expect = 2e-08 Identities = 32/121 (26%), Positives = 63/121 (52%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 M KI+L+ED+ + + RL++ ++V + ++ +PDL+++D+ LP DG Sbjct: 1 MFKIMLIEDDHTLFSEIKERLSQWSYDVFGVSNFEKVIEEFTSLKPDLVIIDIQLPKFDG 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 + R ++ + P+I L++ +D ++ G DD+ KP L++KI +L Sbjct: 61 FHWCRMIR---QHSNVPIIFLSSRDHPTDMVMSMQLGADDFIQKPFHFDVLVAKIQAILR 117 Query: 250 R 248 R Sbjct: 118 R 118
>BAER_ECOLI (P69228) Transcriptional regulatory protein baeR| Length = 240 Score = 57.8 bits (138), Expect = 3e-08 Identities = 36/125 (28%), Positives = 58/125 (46%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+VED +L L + L G + R+ PDLIL+D+ LP DG Sbjct: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER* 245 R+++ P++ +TA DR + G DDY KP +++++ +L R Sbjct: 72 LCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 Query: 244 SHRRE 230 +RE Sbjct: 129 KPQRE 133
>BAER_ECOL6 (P69229) Transcriptional regulatory protein baeR| Length = 240 Score = 57.8 bits (138), Expect = 3e-08 Identities = 36/125 (28%), Positives = 58/125 (46%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+VED +L L + L G + R+ PDLIL+D+ LP DG Sbjct: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER* 245 R+++ P++ +TA DR + G DDY KP +++++ +L R Sbjct: 72 LCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 Query: 244 SHRRE 230 +RE Sbjct: 129 KPQRE 133
>BCER_BACSU (O34951) Sensory transduction protein bceR| Length = 231 Score = 57.4 bits (137), Expect = 4e-08 Identities = 33/124 (26%), Positives = 61/124 (49%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 M K+LL+ED+E + + RLT ++V D + + PD +++D+ LP DG Sbjct: 1 MFKLLLIEDDESLFHEIKDRLTGWSYDVYGIQDFSQVLQEFAAVNPDCVIIDVQLPKFDG 60 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 + R +++ P++ L++ +D ++ G DD+ KP L++KI + Sbjct: 61 FHWCRLIRS---RSNVPILFLSSRDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAMFR 117 Query: 250 R*SH 239 R H Sbjct: 118 RVHH 121
>CHEB_ARCFU (O29221) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 349 Score = 57.4 bits (137), Expect = 4e-08 Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 3/122 (2%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGW 428 ++L+V+D+ ++ LT+ G EVV A +G V+ A + +PD+I +D+++P MDG Sbjct: 2 RVLVVDDSALVRMAVTDILTKAGIEVVDTAKNGREAVEKALKLKPDVITLDINMPEMDGL 61 Query: 427 EATRQLKADPELQQTPVIALTAHAMASDRE--KAIAAGCDDYDTKPIELPRLLSKIAQLL 254 A LK E Q TPV+ L++ RE +A+ G D+ TKP LS +AQ L Sbjct: 62 TA---LKLIMEKQPTPVVMLSSLTKEGARETLEALKIGAVDFVTKPDGALVDLSSVAQEL 118 Query: 253 ER 248 R Sbjct: 119 VR 120
>ZRAR_ECOLI (P14375) Transcriptional regulatory protein zraR| Length = 441 Score = 57.0 bits (136), Expect = 5e-08 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 1/117 (0%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 IL+V+D+ + +L L G+ V LA+ G ++ R + DL+L D+ + MDG Sbjct: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 Query: 421 TRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 254 +++KA +P + PV+ +TA++ +A+ G DY KP++ L + + + L Sbjct: 68 LKEIKALNPAI---PVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121
>PILG_PSEAE (P46384) Protein pilG| Length = 135 Score = 57.0 bits (136), Expect = 5e-08 Identities = 31/113 (27%), Positives = 56/113 (49%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 K+++++D++ L + G +V+ A DG + P++I +D+ +P +DG++ Sbjct: 9 KVMVIDDSKTIRRTAETLLKKVGCDVITAIDGFDALAKIADTHPNIIFVDIMMPRLDGYQ 68 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 266 +K + + TPVI L++ D+ K G D Y TKP LL I Sbjct: 69 TCALIKNNSAFKSTPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAI 121
>SP0A_BACAN (P52928) Stage 0 sporulation protein A| Length = 264 Score = 57.0 bits (136), Expect = 5e-08 Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKG-FEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 K+ LV+DN++ ML + + EV+ A++G ++ + +QPD++++D+ +P +DG Sbjct: 5 KVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDG 64 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 +++ L+Q VI LTA +KA+ G + KP ++ L S I Q+ Sbjct: 65 LAVLEKMRHIERLRQPSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQV 122
>CHEB_HALMA (Q5V0B3) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 369 Score = 56.6 bits (135), Expect = 6e-08 Identities = 38/125 (30%), Positives = 68/125 (54%), Gaps = 8/125 (6%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGW 428 + ++ +D+ ++S L+ G +VV A DG V +PD++ MD+ +PVM+G Sbjct: 6 RAVVADDSHFMRSVISDILSDGGIDVVAQARDGEEAVSAVIEHRPDVVTMDVEMPVMNGI 65 Query: 427 EATRQLKADPELQQTPVIALTAHA--MASDREKAIAAGCDDYDTKP-----IELPRLLSK 269 EAT ++ A+ TPV+ L+AH A +A+ G D+ TKP +E+ RL + Sbjct: 66 EATERIMAE---SPTPVLMLSAHTDENADVTFEALDKGAVDFFTKPGGEVSMEMSRLKDQ 122 Query: 268 IAQLL 254 + +++ Sbjct: 123 LVEMV 127
>SP0F_BACSU (P06628) Sporulation initiation phosphotransferase F (EC 2.7.-.-)| (Stage 0 sporulation protein F) Length = 124 Score = 56.6 bits (135), Expect = 6e-08 Identities = 32/117 (27%), Positives = 61/117 (52%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KIL+V+D +L+ ++G++ A +G +D +E+PDL+L+DM +P MDG E Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIE 64 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 254 +++K E VI +TA+ +++ G + KP ++ + + + L Sbjct: 65 ILKRMKVIDE--NIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119
>PHOP_ECO57 (Q8X738) Transcriptional regulatory protein phoP| Length = 223 Score = 56.2 bits (134), Expect = 8e-08 Identities = 44/193 (22%), Positives = 83/193 (43%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 ++L+VEDN L ++ G +V A D PD+ ++D+ LP DG Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLS 61 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER* 245 + +++ P++ LTA D+ + ++AG DDY TKP + +++++ L+ R Sbjct: 62 LICRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 Query: 244 SHRREPWLPP*PSTAMKLRRQFLLFGVGTTFTAIAAISLSDVITNTRLSESSREEVQSLL 65 S + P RR+ + TA + +I N S + L Sbjct: 120 SGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 179 Query: 64 QEFDIKLIDTVDL 26 + +++ T+D+ Sbjct: 180 PDAELRESHTIDV 192
>ZRAR_ECO57 (Q8X613) Transcriptional regulatory protein zraR| Length = 441 Score = 56.2 bits (134), Expect = 8e-08 Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 IL+V+D+ + +L L G+ V LA+ G ++ R DL+L D+ + MDG Sbjct: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRERVFDLVLCDVRMAEMDGIAT 67 Query: 421 TRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 254 +++KA +P + PV+ +TA++ +A+ G DY KP++ L + + + L Sbjct: 68 LKEIKALNPAI---PVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121
>NISR_LACLA (Q07597) Nisin biosynthesis regulatory protein nisR| Length = 229 Score = 56.2 bits (134), Expect = 8e-08 Identities = 32/119 (26%), Positives = 65/119 (54%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KIL+V+D+++ ++ L + +EV + + +D + DLIL+D+ + ++G E Sbjct: 4 KILIVDDDQEILKLMKTALEMRNYEVATHQNISLPLDITDFQGFDLILLDIMMSNIEGTE 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 ++++ + TP+I ++A D + G DDY TKP L +L++K+ ++R Sbjct: 64 ICKRIRREIS---TPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKR 119
>LUXQ_VIBPA (Q87GU5) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 858 Score = 56.2 bits (134), Expect = 8e-08 Identities = 36/105 (34%), Positives = 55/105 (52%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 K+LLVEDN N +L T+ +V A DG ++ + DLILMD LP + G E Sbjct: 735 KVLLVEDNHTNAFILKAFCTKYKMQVDWAKDGLEAMEFLKDHSYDLILMDNQLPHLGGIE 794 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 290 T++++ + +L TP+ A TA + + AG + KPI+ Sbjct: 795 TTKEIRQNLKL-GTPIYACTADTAQETSDAFMEAGANYVLLKPIK 838
>TCSB_EMENI (Q9P4U6) Two-component system protein B precursor (EC 2.7.13.3) (NHK1| protein) (SLN1 homolog) Length = 1070 Score = 55.8 bits (133), Expect = 1e-07 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 6/120 (5%) Frame = -3 Query: 619 GLGMTKILLVEDNEDNWDMLSRRLTRKG-FEVVLAHDGAAGVDTARREQP-----DLILM 458 GL + L+ EDN N +++ R L + ++V + DG DT + DLI M Sbjct: 929 GLKKIRALVAEDNVVNQEVVLRMLALEDVYDVTVVKDGQEAYDTVKANMEEGKVFDLIFM 988 Query: 457 DMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 278 D+ +P +DG E+TR ++ P++AL+A + S+ + + +G D + +KPI P L Sbjct: 989 DIQMPNLDGIESTRLIRQMG--CSAPIVALSAFSEDSNIKDCMNSGMDMFISKPIRRPAL 1046
>SP0A_BACTU (P0A4I4) Stage 0 sporulation protein A| Length = 264 Score = 55.8 bits (133), Expect = 1e-07 Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKG-FEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 K+ LV+DN++ ML + + EV+ A++G ++ +QPD++++D+ +P +DG Sbjct: 5 KVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDG 64 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 +++ L+Q VI LTA +KA+ G + KP ++ L S I Q+ Sbjct: 65 LAVLEKMRHIERLKQPSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQV 122
>SP0A_BACCR (P0A4I3) Stage 0 sporulation protein A| Length = 264 Score = 55.8 bits (133), Expect = 1e-07 Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKG-FEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 K+ LV+DN++ ML + + EV+ A++G ++ +QPD++++D+ +P +DG Sbjct: 5 KVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDG 64 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 +++ L+Q VI LTA +KA+ G + KP ++ L S I Q+ Sbjct: 65 LAVLEKMRHIERLKQPSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQV 122
>DCTR_BACME (P39486) Probable C4-dicarboxylate response regulator dctR| Length = 228 Score = 55.5 bits (132), Expect = 1e-07 Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 2/116 (1%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTR-KGFEVVLA-HDGAAGVDTARREQPDLILMDMSLPVMDGW 428 +LL+ED+ ++ + + + +GF V+ A +G GV ++ QPDL ++DM +P DG Sbjct: 8 VLLIEDDPMVQEVNRQFIEQVEGFTVIAAASNGLEGVQLIKQHQPDLTIIDMYMPSQDGL 67 Query: 427 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 260 +Q++A+ +T VIA+TA + K + G DY KP + R+ + Q Sbjct: 68 TTLQQIRANG--YKTDVIAVTAASDIETVRKVLQYGAVDYIMKPFKFERMKQALEQ 121
>FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7.13.3)| Length = 777 Score = 55.5 bits (132), Expect = 1e-07 Identities = 32/102 (31%), Positives = 51/102 (50%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 ++LLV+D+ + G V A DG + DLIL D+ +P +DG+ Sbjct: 660 RVLLVDDSPIARATEGALVKALGHSVEEAQDGEEAYVKVQNNTYDLILTDVQMPKLDGFS 719 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 299 R+LK+ P + + PVI L++ A D+ + + AG D Y K Sbjct: 720 LARRLKSTPAVARIPVIILSSLASPEDKRRGLDAGADAYLVK 761
>CHVI_RHISN (P50351) Transcriptional regulatory protein chvI| Length = 238 Score = 54.3 bits (129), Expect = 3e-07 Identities = 39/126 (30%), Positives = 62/126 (49%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 M I LV+D+ + +S L +G++V D +A ++ P L + D+ +P MDG Sbjct: 1 MQTIALVDDDRNILTSVSIALEAEGYKVETYTDRSA-LEGLLARPPHLAIFDIKMPRMDG 59 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 E R+L+ +L PVI LT+ D + G DD+ TKP L+ ++ +L Sbjct: 60 MELLRRLRQKSDL---PVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILR 116 Query: 250 R*SHRR 233 R S R Sbjct: 117 RASGPR 122
>CHEY_PSEAE (Q51455) Chemotaxis protein cheY| Length = 124 Score = 54.3 bits (129), Expect = 3e-07 Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGF-EVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 428 KIL+V+D ++ L GF A DG + D ++ D ++P M G Sbjct: 2 KILIVDDFSTMRRIIKNLLRDLGFTNTAEADDGTTALPMLHSGNFDFLVTDWNMPGMTGI 61 Query: 427 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 + R ++AD L+ PV+ +TA A +A AG + Y KP L KI ++ ER Sbjct: 62 DLLRAVRADERLKHLPVLMVTAEAKRDQIIEAAQAGVNGYVVKPFTAQVLKEKIEKIFER 121
>BVGS_BORPE (P16575) Virulence sensor protein bvgS precursor (EC 2.7.13.3)| Length = 1238 Score = 54.3 bits (129), Expect = 3e-07 Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 5/124 (4%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 ++L+V+D++ N +L ++L G V+ A G A + R D+++ D ++P + G+E Sbjct: 974 RVLVVDDHKPNLMLLRQQLDYLGQRVIAADSGEAALALWREHAFDVVITDCNMPGISGYE 1033 Query: 424 ATRQLKAD---PELQQTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 260 R+++A P +T I TA A + ++ AAG DD KPI + L ++ + Sbjct: 1034 LARRIRAAEAAPGYGRTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNE 1093 Query: 259 LLER 248 + R Sbjct: 1094 AVAR 1097
>LUXQ_VIBCH (Q9KLK7) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 857 Score = 53.9 bits (128), Expect = 4e-07 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 2/107 (1%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 ++LLVEDN N + + G +V DG ++ + DL+LMD LP +DG E Sbjct: 731 RVLLVEDNHTNAFIAQAFCRKYGLDVSWVTDGLQAIEELKIHDYDLVLMDNQLPYLDGVE 790 Query: 424 ATRQLKADPELQQTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIE 290 TR +K ++ PV+ A TA + R+ AG + KP++ Sbjct: 791 TTRTIK---KVLHLPVVVYACTADGLEETRQAFFHAGAEYVLVKPLK 834
>CHEB_HALSA (Q9HQW6) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 347 Score = 53.5 bits (127), Expect = 5e-07 Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 17/168 (10%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMD 434 MT+ L+V+D+ ++S L G +VV A +GA +D QPD+I MD+ +P MD Sbjct: 1 MTEALVVDDSHFMRTVISDILEDGGVDVVGTAENGARALDAVTDVQPDVITMDVEMPEMD 60 Query: 433 GWEATRQLKADPELQQTPVIALTAHAM--ASDREKAIAAGCDDYDTKP------------ 296 G EAT ++ + Q TP++ ++A A +A+ G D KP Sbjct: 61 GIEATAEIMRE---QPTPILMVSALTTEDADATLEAMEKGAIDTFAKPGGTISTELSGHS 117 Query: 295 IELPRLLSKIAQLLER*SH--RREPWLPP*PSTAMKLRRQFLLFGVGT 158 EL + ++A H EP PP +T+ LL G T Sbjct: 118 EELVAAVERVASADPTAGHDVEMEPASPPDATTSEYADNPTLLIGAST 165
>CHEY_TREPA (P96126) Chemotaxis protein cheY| Length = 144 Score = 53.5 bits (127), Expect = 5e-07 Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 4/122 (3%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVV-LAHDGAAGVDTARREQP--DLILMDMSLPVMD 434 ++L+V+D+ + + LT +G+EV A DG GV+ + P DL+ MD+++P MD Sbjct: 26 RVLVVDDSMFVSKQIGQILTSEGYEVADTAVDGVDGVEKYKAMSPGVDLVTMDITMPKMD 85 Query: 433 GWEATRQ-LKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 G A + L+ D + V+ ++A +KA+ G +Y KP++ ++L +IA + Sbjct: 86 GITALEKILEFD---KNAKVVIISALGKEELVKKALLLGAKNYIVKPLDRKKVLERIASV 142 Query: 256 LE 251 L+ Sbjct: 143 LK 144
>REGX3_MYCLE (P54884) Sensory transduction protein regX3| Length = 198 Score = 53.5 bits (127), Expect = 5e-07 Identities = 30/89 (33%), Positives = 46/89 (51%) Frame = -3 Query: 514 DGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREK 335 DG A + R D++L+D+ LP M G + +QL+ + PVI +TA D+ Sbjct: 4 DGPAALAEFDRSGADIVLLDLMLPGMSGTDVYKQLRVRSSV---PVIMVTARDSEIDKVV 60 Query: 334 AIAAGCDDYDTKPIELPRLLSKIAQLLER 248 + G DDY TKP L+++I +L R Sbjct: 61 GLELGADDYVTKPYSARELIARIRAVLRR 89
>LUXO_VIBVY (Q7MM78) Regulatory protein luxO| Length = 453 Score = 53.5 bits (127), Expect = 5e-07 Identities = 32/106 (30%), Positives = 49/106 (46%) Frame = -3 Query: 595 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 416 +VED + L G ++ + G +D+ + PDLIL+D+ LP M G + Sbjct: 1 MVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLH 60 Query: 415 QLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 278 +KA P+I +TAH +A+ G D+ KP E RL Sbjct: 61 AVKASH--PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRL 104
>LUXO_VIBVU (Q8CWJ5) Regulatory protein luxO| Length = 453 Score = 53.5 bits (127), Expect = 5e-07 Identities = 32/106 (30%), Positives = 49/106 (46%) Frame = -3 Query: 595 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 416 +VED + L G ++ + G +D+ + PDLIL+D+ LP M G + Sbjct: 1 MVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLH 60 Query: 415 QLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 278 +KA P+I +TAH +A+ G D+ KP E RL Sbjct: 61 AVKASH--PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRL 104
>CHEB_NATPD (Q3IRR4) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 355 Score = 53.5 bits (127), Expect = 5e-07 Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 3/104 (2%) Frame = -3 Query: 598 LLVEDNEDNWDMLSRRLTRKGFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 ++V+D++ ++S L G VV A +G +GV+ R +PD++ MD+ +P MDG EA Sbjct: 9 VVVDDSQFMRTVISDMLDDAGITVVATASNGESGVEAVRTHEPDVVTMDLKMPGMDGIEA 68 Query: 421 TRQLKADPELQQTPVIALTAHA--MASDREKAIAAGCDDYDTKP 296 T ++ + TPV+ L+AHA A +A+ G D+ KP Sbjct: 69 TGRIMDE---CPTPVLVLSAHADDGAELTFEAMDEGAVDFFKKP 109
>CHEY_LISMO (P0A4H5) Chemotaxis protein cheY| Length = 119 Score = 53.1 bits (126), Expect = 7e-07 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 2/117 (1%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMD 434 M K+L+V+D M+ + FEVV A +G V +PD++ +D+++P MD Sbjct: 1 MLKLLIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYDEVKPDIVTLDITMPEMD 60 Query: 433 GWEATRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 266 G EA Q+ A DP + A+ M D AI G D+ KP + R+L + Sbjct: 61 GLEALAQIMAKDPSAKVIMCSAMGQQGMVVD---AIKKGAKDFIVKPFQADRVLEAL 114
>CHEY_LISIN (P0A4H6) Chemotaxis protein cheY| Length = 119 Score = 53.1 bits (126), Expect = 7e-07 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 2/117 (1%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMD 434 M K+L+V+D M+ + FEVV A +G V +PD++ +D+++P MD Sbjct: 1 MLKLLIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYDEVKPDIVTLDITMPEMD 60 Query: 433 GWEATRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 266 G EA Q+ A DP + A+ M D AI G D+ KP + R+L + Sbjct: 61 GLEALAQIMAKDPSAKVIMCSAMGQQGMVVD---AIKKGAKDFIVKPFQADRVLEAL 114
>SPAR_BACSU (P33112) Subtilin biosynthesis regulatory protein spaR| Length = 220 Score = 53.1 bits (126), Expect = 7e-07 Identities = 38/121 (31%), Positives = 60/121 (49%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 M KIL V+D +D ++ L R +V + D G + DLIL+D+ +P +DG Sbjct: 1 MAKILAVDDEKDILVLIQNILRRDQHQVDIL-DHVHGQPPDVFQGYDLILLDVMMPDIDG 59 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 251 +E +Q++ L P++ LTA K + G DDY TKP + L +++ L Sbjct: 60 FELCKQIRP---LVDCPILFLTAKTEEEAIVKGLITGGDDYITKPFGVRELSARVNAHLR 116 Query: 250 R 248 R Sbjct: 117 R 117
>VRAR_STAES (Q8CNP9) Response regulator protein vraR| Length = 209 Score = 53.1 bits (126), Expect = 7e-07 Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 4/106 (3%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRL-TRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVM 437 K+L V+D+E +S L T++ EVV +GA+G D A +PDLILMD+ + M Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQEDIEVV--GEGASGKDAITKAHELKPDLILMDLLMDDM 61 Query: 436 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 299 DG EAT ++K D L Q V+ LT+ + +A+ +G D Y K Sbjct: 62 DGVEATTEIKKD--LPQIKVVMLTSFIEDKEVYRALDSGVDSYILK 105
>VRAR_STAEQ (Q5HN50) Response regulator protein vraR| Length = 209 Score = 53.1 bits (126), Expect = 7e-07 Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 4/106 (3%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRL-TRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVM 437 K+L V+D+E +S L T++ EVV +GA+G D A +PDLILMD+ + M Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQEDIEVV--GEGASGKDAITKAHELKPDLILMDLLMDDM 61 Query: 436 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 299 DG EAT ++K D L Q V+ LT+ + +A+ +G D Y K Sbjct: 62 DGVEATTEIKKD--LPQIKVVMLTSFIEDKEVYRALDSGVDSYILK 105
>VRAR_STAAW (Q7A0I0) Response regulator protein vraR| Length = 209 Score = 53.1 bits (126), Expect = 7e-07 Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 3/105 (2%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 434 K+L V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMD 62 Query: 433 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 299 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAU (P0C0Z1) Response regulator protein vraR| Length = 209 Score = 53.1 bits (126), Expect = 7e-07 Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 3/105 (2%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 434 K+L V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMD 62 Query: 433 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 299 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAS (Q6G850) Response regulator protein vraR| Length = 209 Score = 53.1 bits (126), Expect = 7e-07 Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 3/105 (2%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 434 K+L V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMD 62 Query: 433 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 299 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAR (Q6GFH3) Response regulator protein vraR| Length = 209 Score = 53.1 bits (126), Expect = 7e-07 Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 3/105 (2%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 434 K+L V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMD 62 Query: 433 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 299 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAN (Q7A4R9) Response regulator protein vraR| Length = 209 Score = 53.1 bits (126), Expect = 7e-07 Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 3/105 (2%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 434 K+L V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMD 62 Query: 433 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 299 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAM (Q7A2Q1) Response regulator protein vraR| Length = 209 Score = 53.1 bits (126), Expect = 7e-07 Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 3/105 (2%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 434 K+L V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMD 62 Query: 433 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 299 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAC (Q5HEP0) Response regulator protein vraR| Length = 209 Score = 53.1 bits (126), Expect = 7e-07 Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 3/105 (2%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 434 K+L V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMDDMD 62 Query: 433 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 299 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>NTRC_KLEPN (P03029) Nitrogen assimilation regulatory protein| Length = 469 Score = 53.1 bits (126), Expect = 7e-07 Identities = 32/121 (26%), Positives = 56/121 (46%) Frame = -3 Query: 589 EDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL 410 +D+ W +L R LT G G +D + PD++L D+ +P MDG +Q+ Sbjct: 11 DDSSIRW-VLERALTGAGLSCTTFESGNEVLDALTTKTPDVLLSDIRMPGMDGLALLKQI 69 Query: 409 KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 230 K + PVI +TAH+ A G DY KP ++ ++ + + + +++ Sbjct: 70 KQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVDRAISHYQEQQQ 127 Query: 229 P 227 P Sbjct: 128 P 128
>LUXQ_VIBHA (P54302) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 859 Score = 53.1 bits (126), Expect = 7e-07 Identities = 36/105 (34%), Positives = 52/105 (49%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 K+LLVEDN N +L + +V A DG ++ DLILMD LP + G E Sbjct: 736 KVLLVEDNHTNAFILQAFCKKYKMQVDWAKDGLDAMELLSDTTYDLILMDNQLPHLGGIE 795 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 290 T +++ + L TP+ A TA + +AAG + KPI+ Sbjct: 796 TTHEIRQNLRL-GTPIYACTADTAKETSDAFMAAGANYVMLKPIK 839
>SP0A_MOOTA (P52941) Stage 0 sporulation protein A homolog| Length = 256 Score = 52.8 bits (125), Expect = 9e-07 Identities = 29/118 (24%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVV--LAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 K+L+ +DN + ++L + V+ +AH+G ++ + ++PD++++D+ +P +DG Sbjct: 5 KVLIADDNREFCEVLEEYFNEQEDFVLSGVAHNGQETLELIQEQEPDIVILDIIMPHLDG 64 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 +L+ + ++ LTA S +++ G D Y KP +L L +++ QL Sbjct: 65 IGVLEKLQVLNFEPRPKIVILTALGQESMTMRSVELGADYYILKPFDLEVLGNRLRQL 122
>SP0A_CLOPA (P52940) Stage 0 sporulation protein A homolog| Length = 273 Score = 52.8 bits (125), Expect = 9e-07 Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVV--LAHDGAAGVDTARREQPDLILMDMSLPVMDGW 428 +L+ +DN++ ++L+ L + VV +A DG + ++PDL+++D+ +P MDG Sbjct: 8 VLIADDNKEFCNILNDYLLNQSDIVVVGIAKDGIEALKLIEEKKPDLVILDIIMPNMDGL 67 Query: 427 EATRQLKADPELQQTP-VIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 +L A+ + P VI L+A ++AI G D Y KP ++ +I Q+ Sbjct: 68 VVLEKL-ANINIDPVPNVIVLSAVGQDKITQRAITLGADYYVVKPFDMDVFTKRIRQM 124
>RPFC_XANCP (P0C0F6) Sensory/regulatory protein rpfC (EC 2.7.13.3)| Length = 677 Score = 52.8 bits (125), Expect = 9e-07 Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 ++L+ +D+E N +L R L + G +V+ + +D E D +++D+ +P M+G + Sbjct: 414 RMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLD 473 Query: 424 ATRQLKADPE--LQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 +QL+ ++ TPV+ L+A AG + KP+ +LL +A L Sbjct: 474 MLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADL 531
>CHEY_THEMA (Q56312) Chemotaxis protein cheY| Length = 120 Score = 52.8 bits (125), Expect = 9e-07 Identities = 34/115 (29%), Positives = 63/115 (54%), Gaps = 2/115 (1%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGW 428 ++L+V+D ML +T+ G+EV A +G V+ + +PD++ MD+++P M+G Sbjct: 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGI 63 Query: 427 EATRQ-LKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 266 +A ++ +K DP + A+ AM + AI AG D+ KP + R++ + Sbjct: 64 DAIKEIMKIDPNAKIIVCSAMGQQAMVIE---AIKAGAKDFIVKPFQPSRVVEAL 115
>PILR_PSEAE (Q00934) Type 4 fimbriae expression regulatory protein pilR| Length = 445 Score = 52.8 bits (125), Expect = 9e-07 Identities = 37/117 (31%), Positives = 56/117 (47%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 K L+V+D D ++L L R + A + + RE DL L DM LP G + Sbjct: 5 KALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLD 64 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 254 + ++ QTPV +TA+ +A+ AG D+ TKP++L RL +A L Sbjct: 65 LVQYIQQ--RHPQTPVAMITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATAL 119
>MAK2_SCHPO (O14002) Peroxide stress-activated histidine kinase mak2 (EC| 2.7.13.3) (Mcs4-associated kinase 2) (His-Asp phosphorelay kinase phk1) Length = 2310 Score = 52.4 bits (124), Expect = 1e-06 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 9/126 (7%) Frame = -3 Query: 598 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQ---PDLILMDMSLPVMDGW 428 L+ EDN +L+++L+ GF+V A DG V +Q +I D +P+ DG Sbjct: 2182 LIAEDNLIARKLLTKQLSNLGFQVHAAVDGVELVKMYEAKQFGFYSVIFADYHMPIRDGA 2241 Query: 427 EATRQLKADPELQQT----PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 260 EA ++A PVIALTA S +++ + G + Y TKP +L++ + + Sbjct: 2242 EAVMDIRAYERENNCSTPIPVIALTADIQKSAKQRCLEVGMNFYLTKPFTQKQLVNAVRE 2301 Query: 259 --LLER 248 LLE+ Sbjct: 2302 FVLLEK 2307
>RPFC_XANC8 (P0C0F7) Sensory/regulatory protein rpfC (EC 2.7.13.3)| Length = 677 Score = 52.4 bits (124), Expect = 1e-06 Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 ++L+ +D+E N +L R L + G +V+ + +D E D +++D+ +P M+G + Sbjct: 414 RMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLD 473 Query: 424 ATRQLKADPE--LQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 +QL+ ++ TPV+ L+A AG + KP+ +LL +A L Sbjct: 474 MLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVLAAKLLDTLADL 531
>NTRC_ECOLI (P0AFB8) Nitrogen regulation protein NR(I)| Length = 469 Score = 52.4 bits (124), Expect = 1e-06 Identities = 31/121 (25%), Positives = 57/121 (47%) Frame = -3 Query: 589 EDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL 410 +D+ W +L R L G +GA ++ + PD++L D+ +P MDG +Q+ Sbjct: 11 DDSSIRW-VLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQI 69 Query: 409 KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 230 K + PVI +TAH+ A G DY KP ++ ++ + + + +++ Sbjct: 70 KQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 Query: 229 P 227 P Sbjct: 128 P 128
>NTRC_ECO57 (P0AFB9) Nitrogen regulation protein NR(I)| Length = 469 Score = 52.4 bits (124), Expect = 1e-06 Identities = 31/121 (25%), Positives = 57/121 (47%) Frame = -3 Query: 589 EDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL 410 +D+ W +L R L G +GA ++ + PD++L D+ +P MDG +Q+ Sbjct: 11 DDSSIRW-VLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQI 69 Query: 409 KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 230 K + PVI +TAH+ A G DY KP ++ ++ + + + +++ Sbjct: 70 KQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 Query: 229 P 227 P Sbjct: 128 P 128
>CHEY_CAMJE (P71129) Chemotaxis protein cheY homolog| Length = 130 Score = 52.4 bits (124), Expect = 1e-06 Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVL-AHDGAAGVDT-ARREQPDLILMDMSLPVMDG 431 K+L+V+D+ ++ LTR G + VL A G D + E +++ D ++P M+G Sbjct: 2 KLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKNEDVKVLITDWNMPEMNG 61 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 254 E ++++A+ + + P+I +T ++ A+ AG ++Y KP L K+ +L Sbjct: 62 LELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEDVL 120
>BVGS_BORPA (P40330) Virulence sensor protein bvgS precursor (EC 2.7.13.3)| Length = 1238 Score = 52.4 bits (124), Expect = 1e-06 Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 5/124 (4%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 ++L+V+D++ N +L ++L G VV A G A + D+++ D ++P ++G+E Sbjct: 974 RVLVVDDHKPNLMLLRQQLDYLGQRVVAADSGEAALALWHEHAFDVVITDCNMPGINGYE 1033 Query: 424 ATRQLKAD---PELQQTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 260 R+++A P +T I TA A + ++ AAG DD KPI + L ++ + Sbjct: 1034 LARRIRAAEAAPGYGRTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNE 1093 Query: 259 LLER 248 R Sbjct: 1094 AAAR 1097
>BVGS_BORBR (P26762) Virulence sensor protein bvgS precursor (EC 2.7.13.3)| Length = 1238 Score = 52.4 bits (124), Expect = 1e-06 Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 5/124 (4%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 ++L+V+D++ N +L ++L G VV A G A + D+++ D ++P ++G+E Sbjct: 974 RVLVVDDHKPNLMLLRQQLDYLGQRVVAADSGEAALALWHEHAFDVVITDCNMPGINGYE 1033 Query: 424 ATRQLKAD---PELQQTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 260 R+++A P +T I TA A + ++ AAG DD KPI + L ++ + Sbjct: 1034 LARRIRAAEAAPGYGRTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNE 1093 Query: 259 LLER 248 R Sbjct: 1094 AAAR 1097
>CSSR_BACSU (O32192) Transcriptional regulatory protein cssR| Length = 225 Score = 52.4 bits (124), Expect = 1e-06 Identities = 36/121 (29%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQ---PDLILMDMSLPVMDG 431 I LVED ++ ++L++ L +G+ + G + AR++ P L ++D+ LP DG Sbjct: 5 IYLVEDEDNLNELLTKYLENEGWNITSFTKG----EDARKKMTPSPHLWILDIMLPDTDG 60 Query: 430 WEATRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 254 + +++KA DP++ PVI ++A DR + G +DY +KP L+ ++ +LL Sbjct: 61 YTLIKEIKAKDPDV---PVIFISARDADIDRVLGLELGSNDYISKPFLPRELIIRVQKLL 117 Query: 253 E 251 + Sbjct: 118 Q 118
>HNR_SHIFL (P0AEV3) Protein hnr| Length = 337 Score = 52.0 bits (123), Expect = 2e-06 Identities = 31/105 (29%), Positives = 56/105 (53%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+VED + +L + G VLA DG ++ PDL++ D+++P M+G + Sbjct: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 290 ++ + QTPV+ ++A +D KA+ G +D KP++ Sbjct: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>HNR_ECOLI (P0AEV1) Protein hnr| Length = 337 Score = 52.0 bits (123), Expect = 2e-06 Identities = 31/105 (29%), Positives = 56/105 (53%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+VED + +L + G VLA DG ++ PDL++ D+++P M+G + Sbjct: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 290 ++ + QTPV+ ++A +D KA+ G +D KP++ Sbjct: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>HNR_ECO57 (P0AEV2) Protein hnr| Length = 337 Score = 52.0 bits (123), Expect = 2e-06 Identities = 31/105 (29%), Positives = 56/105 (53%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +IL+VED + +L + G VLA DG ++ PDL++ D+++P M+G + Sbjct: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 290 ++ + QTPV+ ++A +D KA+ G +D KP++ Sbjct: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>LUXN_VIBHA (P54301) Autoinducer 1 sensor kinase/phosphatase luxN (EC 2.7.13.3)| (EC 3.1.3.-) Length = 849 Score = 52.0 bits (123), Expect = 2e-06 Identities = 28/83 (33%), Positives = 52/83 (62%), Gaps = 1/83 (1%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 +L+V+D E ++ L + G + A++G V+ + DLILMD+ +PVM+G++A Sbjct: 723 VLIVDDKEVQRALVQMYLNQLGVNSLQANNGENAVEVFKANHVDLILMDVQMPVMNGFDA 782 Query: 421 TRQLKADPELQ-QTPVIALTAHA 356 ++++K EL QTP++AL+ + Sbjct: 783 SQRIK---ELSPQTPIVALSGES 802
>SP0A_BACSU (P06534) Stage 0 sporulation protein A| Length = 267 Score = 52.0 bits (123), Expect = 2e-06 Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLT-RKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 K+ + +DN + +LS + ++ EV+ +A++G + + + PD++++D+ +P +DG Sbjct: 5 KVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDG 64 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 +L+ +Q VI LTA +KA+ G + KP ++ L+ I Q+ Sbjct: 65 LAVLERLRESDLKKQPNVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQV 122
>LUXO_VIBPA (Q87MX7) Regulatory protein luxO| Length = 453 Score = 52.0 bits (123), Expect = 2e-06 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Frame = -3 Query: 595 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 416 +VED + LT G ++ + G +++ PDLIL+D+ LP M G + Sbjct: 1 MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLH 60 Query: 415 QL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 278 + K+ P++ P+I +TAH +A+ G D+ KP E RL Sbjct: 61 AVKKSHPDV---PIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRL 104
>LUXO_VIBHA (P54299) Luminescence regulatory protein luxO| Length = 453 Score = 52.0 bits (123), Expect = 2e-06 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Frame = -3 Query: 595 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 416 +VED + LT G ++ + G +++ PDLIL+D+ LP M G + Sbjct: 1 MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLH 60 Query: 415 QL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 278 + K+ P++ P+I +TAH +A+ G D+ KP E RL Sbjct: 61 AVKKSHPDV---PIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRL 104
>NTRC_PROVU (P28787) Nitrogen regulation protein NR(I)| Length = 473 Score = 51.6 bits (122), Expect = 2e-06 Identities = 33/121 (27%), Positives = 56/121 (46%) Frame = -3 Query: 589 EDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL 410 +D+ W +L R +TR+G + EQPD++L D+ +P MDG + + Sbjct: 11 DDSSIRW-VLERAITREGMLCRAFEHANDVLKALNSEQPDVLLSDIRMPDMDGLSLLKII 69 Query: 409 KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 230 K + PVI +TAH+ A G DY KP ++ L+ I + + +++ Sbjct: 70 KE--QYPTLPVIIMTAHSDLDAAVNAYQQGAFDYLPKPFDIDETLALIERAITHYREQKQ 127 Query: 229 P 227 P Sbjct: 128 P 128
>PRR1_SCHPO (O14283) Transcription factor prr1 (Pombe response regulator 1)| Length = 539 Score = 51.6 bits (122), Expect = 2e-06 Identities = 39/117 (33%), Positives = 57/117 (48%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 +ILLVED+E + M + LT +V +A DG V+ A DLILMD LP +DG Sbjct: 369 RILLVEDDELSRRMTIKFLTSFDCQVDVAVDGIGAVNKANAGGFDLILMDFILPNLDGLS 428 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 254 T ++ TP++A+T++ +D G D KP LL + + L Sbjct: 429 VTCLIRQYD--HNTPILAITSNISMNDAVTYFNHGVTDLLVKPFTKLTLLQLLKKQL 483
>VRAR_STAHJ (Q4L7J5) Response regulator protein vraR| Length = 209 Score = 51.6 bits (122), Expect = 2e-06 Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 3/105 (2%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 434 K+L V+D+E +S L+ + ++ + +G +G D A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEIVGEGESGKDAIAKAHELKPDLILMDLLMDDMD 62 Query: 433 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 299 G EAT Q+K D L V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPHIKVVMLTSFIEDKEVYRALDAGVDSYILK 105
>LUXO1_VIBCH (Q9KT84) Regulatory protein luxO| Length = 455 Score = 51.6 bits (122), Expect = 2e-06 Identities = 30/106 (28%), Positives = 50/106 (47%) Frame = -3 Query: 595 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 416 +VED + LT ++ + G +++ R +PDLIL+D+ LP M G + Sbjct: 1 MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60 Query: 415 QLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 278 +K + P++ +TAH +A+ G D+ KP E RL Sbjct: 61 AVK--EKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRL 104
>CHEY_YEREN (Q93P00) Chemotaxis protein cheY| Length = 128 Score = 51.6 bits (122), Expect = 2e-06 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 1/120 (0%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 428 + L+V+D ++ L GF V A DG ++ R D ++ D ++P MDG Sbjct: 6 RFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLRTGGFDFVVSDWNMPNMDGL 65 Query: 427 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 + + ++AD L PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 DLLKTIRADGALGTLPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>SP0A_BACME (P52932) Stage 0 sporulation protein A (Fragment)| Length = 212 Score = 51.2 bits (121), Expect = 3e-06 Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLT-RKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 K+ LV+DN + +L ++ ++ EV+ +A++G + + + PD++++D+ +P +DG Sbjct: 5 KVCLVDDNRELIGLLEDYISEQEDMEVIGVAYNGQECLSILKDKNPDVLVLDIIMPHLDG 64 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 QLK + VI LTA +KA+ G + KP ++ L++ I Q+ Sbjct: 65 LAVLGQLKEMKKENYPNVIMLTAFGQEDVTKKAVDLGAAYFILKPFDMENLVNHIRQV 122
>VRAR_STAS1 (Q49YS9) Response regulator protein vraR| Length = 209 Score = 51.2 bits (121), Expect = 3e-06 Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 3/105 (2%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 434 K+L V+D+E +S L+ + ++ + +G +G D A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIDVVGEGKSGKDAIEKAHELKPDLILMDLLMDDMD 62 Query: 433 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 299 G EAT Q+K D L V+ LT++ ++ +A+ +G D Y K Sbjct: 63 GVEATEQVKKD--LPNIKVVMLTSYIEDNEVYRALDSGVDSYILK 105
>PMRA_PECCC (Q70FH0) Transcriptional regulatory protein pmrA| Length = 222 Score = 51.2 bits (121), Expect = 3e-06 Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 9/128 (7%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPD---------LILMDM 452 K+L+VED+ +L ++G + L+H+G A ++ D L+++D+ Sbjct: 2 KLLIVEDD---------KLLQEGLLLALSHEGYACDCAGTAKEADALIGSAHYSLVILDL 52 Query: 451 SLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLS 272 LP DG + + + Q PV+ LTA DR + G DDY KP L L + Sbjct: 53 GLPDDDGLALLSRWRKNN--YQHPVLILTARDKVDDRVSGLDVGADDYLAKPFALTELQA 110 Query: 271 KIAQLLER 248 ++ L+ R Sbjct: 111 RVRALIRR 118
>BASR_SALTY (P36556) Transcriptional regulatory protein basR/pmrA| Length = 222 Score = 51.2 bits (121), Expect = 3e-06 Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 9/134 (6%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAA--GVDTARREQPDL-------ILMDM 452 KIL+VED+ L +G + +G A GV TAR + L +++D+ Sbjct: 2 KILIVEDDT---------LLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDL 52 Query: 451 SLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLS 272 LP DG +++ + PV+ LTAH +DR + G DDY KP L L + Sbjct: 53 GLPDEDGLHFLTRIRQ--KKYTLPVLILTAHDTLNDRITGLDVGADDYLVKPFALEELHA 110 Query: 271 KIAQLLER*SHRRE 230 +I LL R +++ E Sbjct: 111 RIRALLRRHNNQGE 124
>TRPO_PSEAE (P24908) Putative transcriptional regulator| Length = 207 Score = 50.8 bits (120), Expect = 3e-06 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 1/113 (0%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMD 434 M+K+L+V+D+ + R GF +V A +GA + AR++ PDL ++D+ +P +D Sbjct: 1 MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKID 60 Query: 433 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLL 275 G E +LK+ T V+ LT A + + AG + +K L LL Sbjct: 61 GLEVIARLKS--LKLDTKVLVLTRQNPAQFAPRCLQAGAMGFVSKRENLSELL 111
>RSTA_ECOLI (P52108) Transcriptional regulatory protein rstA| Length = 242 Score = 50.8 bits (120), Expect = 3e-06 Identities = 33/115 (28%), Positives = 55/115 (47%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 M I+ VED+ + +++ L + +V + G +T RE PDL+L+D+ LP DG Sbjct: 4 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 63 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 266 R L+A P++ LT+ + A+ G DY K LL+++ Sbjct: 64 MTICRDLRAK---WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARL 115
>SP0A_BREPA (P52929) Stage 0 sporulation protein A (Fragment)| Length = 212 Score = 50.8 bits (120), Expect = 3e-06 Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRK-GFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 ++LL +DN + +L ++ + V+ +A++G V + PD++++D+ +P +DG Sbjct: 5 EVLLADDNREFVSLLEEYISSQYDMNVIGVAYNGNEVVRLLQERVPDVLILDIIMPHLDG 64 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 254 Q++A Q +I LTA +KA+ G Y KP ++ L +I Q++ Sbjct: 65 LAVLEQIQAMRLSPQPKIIMLTAFGQEEITKKAVELGAAYYILKPFDMEVLAQRIRQII 123
>SP0A_CLOBE (P52936) Stage 0 sporulation protein A homolog (Fragment)| Length = 223 Score = 50.8 bits (120), Expect = 3e-06 Identities = 31/118 (26%), Positives = 63/118 (53%), Gaps = 3/118 (2%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVV--LAHDGAAGVDTARREQPDLILMDMSLPVMDGW 428 +L+ +DN++ +L+ L + VV +A DG+ ++ +PDL+++D+ +P +DG Sbjct: 8 VLIADDNKEFCSILNDYLLNQKDIVVTGIAKDGSEALELIVERKPDLVILDIIMPHLDGL 67 Query: 427 EATRQLKADPELQQTP-VIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 +L +L++ P +I L+A ++AI G D Y KP ++ +I ++ Sbjct: 68 GVLEKLNT-MQLEKVPRIIILSAVGQDKITQQAITLGADYYTVKPFDMEVFTKRIREM 124
>CHEY_SALTY (P0A2D5) Chemotaxis protein cheY| Length = 128 Score = 50.8 bits (120), Expect = 3e-06 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 428 K L+V+D ++ L GF V A DG ++ + I+ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDGL 65 Query: 427 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_SALTI (P0A2D6) Chemotaxis protein cheY| Length = 128 Score = 50.8 bits (120), Expect = 3e-06 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 428 K L+V+D ++ L GF V A DG ++ + I+ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDGL 65 Query: 427 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_ENTCL (Q9FAD7) Chemotaxis protein cheY| Length = 128 Score = 50.8 bits (120), Expect = 3e-06 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 428 K L+V+D ++ L GF V A DG ++ + ++ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGL 65 Query: 427 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADAGMASMPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLGKIFEK 125
>SP0A_CLOAB (P58253) Stage 0 sporulation protein A homolog| Length = 281 Score = 50.8 bits (120), Expect = 3e-06 Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 2/117 (1%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVV--LAHDGAAGVDTARREQPDLILMDMSLPVMDGW 428 +L+ +DN++ ++L+ L + +V +A DG + ++PDL+++D+ +P +DG Sbjct: 8 VLIADDNKEFCNILNDYLLNQSDMIVVGIAKDGVEALKLIENKKPDLVVLDIIMPRLDGL 67 Query: 427 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 +L +I L+A ++AI G D Y KP ++ ++I ++ Sbjct: 68 GVLEKLNNKDAENLPRIIVLSAVGQDKITQRAITLGADYYVVKPFDMDVFTNRIREM 124
>CHEB_RHILO (Q98PD1) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 339 Score = 50.8 bits (120), Expect = 3e-06 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 2/70 (2%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVV--LAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 +I +V D ++L R + G V +A +G V+ RR+ PDLILMD+++PVMDG Sbjct: 2 RIGVVNDMPMAVELLRRLVLSTGEHQVAWIATNGREAVEVCRRDLPDLILMDLAMPVMDG 61 Query: 430 WEATRQLKAD 401 EATR++ A+ Sbjct: 62 VEATRRIMAE 71
>ARCA_HAEIN (P44918) Aerobic respiration control protein arcA homolog| Length = 236 Score = 50.4 bits (119), Expect = 4e-06 Identities = 36/119 (30%), Positives = 55/119 (46%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KIL+VED + L +G++V A +G +L++MD++LP +G Sbjct: 5 KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLL 64 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+L+ + L P+I LT D+ + G DDY TKP L + LL R Sbjct: 65 LARELREELSL---PLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHR 120
>CHEY_YERPE (Q8D0P1) Chemotaxis protein cheY| Length = 128 Score = 50.4 bits (119), Expect = 4e-06 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 428 + L+V+D ++ L GF V A DG ++ R D ++ D ++P MDG Sbjct: 6 RFLVVDDFSTMRRIVRNLLKELGFHNVEEAEDGVDALNKLRAGGFDFVVSDWNMPNMDGL 65 Query: 427 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 + + ++ D L PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 DLLKTIRTDGALATLPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_SHIFL (P0AE69) Chemotaxis protein cheY| Length = 128 Score = 50.4 bits (119), Expect = 4e-06 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 428 K L+V+D ++ L GF V A DG ++ + ++ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGL 65 Query: 427 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_ECOLI (P0AE67) Chemotaxis protein cheY| Length = 128 Score = 50.4 bits (119), Expect = 4e-06 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 428 K L+V+D ++ L GF V A DG ++ + ++ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGL 65 Query: 427 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_ECO57 (P0AE68) Chemotaxis protein cheY| Length = 128 Score = 50.4 bits (119), Expect = 4e-06 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 428 K L+V+D ++ L GF V A DG ++ + ++ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGL 65 Query: 427 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>VANR_ENTFC (Q06239) Regulatory protein vanR| Length = 231 Score = 50.1 bits (118), Expect = 6e-06 Identities = 29/119 (24%), Positives = 56/119 (47%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KIL+V+D + D++ L + + V + ++ + + DL ++D+ LP G Sbjct: 4 KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLT 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 ++++ + P+I LT D+ + G DDY TKP L++++ L R Sbjct: 64 ICQKIR---DKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119
>CHEY_ECOL6 (Q8FGP6) Chemotaxis protein cheY| Length = 128 Score = 50.1 bits (118), Expect = 6e-06 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 1/120 (0%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 428 K L+V+D ++ L GF V A DG ++ + ++ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGLDALNKLQAGGYGFVISDWNMPNMDGL 65 Query: 427 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_HELPJ (Q9ZM64) Chemotaxis protein cheY homolog| Length = 124 Score = 50.1 bits (118), Expect = 6e-06 Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLA--HDGAAGVDTARREQPDLILMDMSLPVMDG 431 K+L+V+D+ ++ L+R G+E VL H A +++ D ++P M+G Sbjct: 2 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 61 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 254 + ++++AD ++ P+I +T ++ A+ AG ++Y KP L K+ +L Sbjct: 62 LDLVKKVRADNRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 120
>CHEB_DESPS (Q6AJV3) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 364 Score = 50.1 bits (118), Expect = 6e-06 Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTR-KGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 ++L+V+D ++S L G EV+ +AH+G +D R +PDLI +D+ +PVM+G Sbjct: 5 RVLVVDDTILYRKIVSDLLREIPGIEVIGVAHNGKIALDKIRLSKPDLITLDIEMPVMNG 64 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIA 263 E LK P+ +++ + KA+ G D+ KP E +K A Sbjct: 65 IELLEHLKDIPDAPGAVMLSTLTSDGSRMTMKALELGAFDFILKPQEKTPAANKAA 120
>CCDB_BACSU (P45709) Protein ccdB| Length = 120 Score = 50.1 bits (118), Expect = 6e-06 Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMD 434 MT++L+V+D + + L + + A DG D ++ +PDL+ MD+++PV + Sbjct: 1 MTRVLVVDDAKFMRVKIREILEEANYIIAGEAADGEQAADLYKKLRPDLVTMDITMPVKN 60 Query: 433 GWEATRQ-LKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 G +A R L DP+ + VI TA +AI G D+ KP E ++L ++++ Sbjct: 61 GIKALRDILTFDPKAK---VIMCTAMRQQRIVTEAIELGAKDFIVKPFEETKVLEAVSRV 117 Query: 256 L 254 + Sbjct: 118 M 118
>RCP1_SYNY3 (Q55169) Response regulator rcp1| Length = 147 Score = 49.7 bits (117), Expect = 8e-06 Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 9/121 (7%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGF--EVVLAHDGAAGVDTARRE-------QPDLILMDMS 449 ILLVED++ + ++ L E+++ DG A + +++ +P+LIL+D++ Sbjct: 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLN 70 Query: 448 LPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSK 269 LP DG E ++K +P+L++ PV+ LT D + + Y TK L L Sbjct: 71 LPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKM 130 Query: 268 I 266 + Sbjct: 131 V 131
>CHEY_HELPY (P71403) Chemotaxis protein cheY homolog| Length = 124 Score = 49.3 bits (116), Expect = 1e-05 Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLA--HDGAAGVDTARREQPDLILMDMSLPVMDG 431 K+L+V+D+ ++ L+R G+E VL H A +++ D ++P M+G Sbjct: 2 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 61 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 254 + +++++D ++ P+I +T ++ A+ AG ++Y KP L K+ +L Sbjct: 62 LDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 120
>CHEB_VIBF1 (Q5E3S1) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 376 Score = 48.9 bits (115), Expect = 1e-05 Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 18/180 (10%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTR-----KGFEVV-LAHDGAAGVDTARREQPDLILMDMSLP 443 K+L+V+D+ RR++ EV+ +A +G V+ A+ +PD+I MD+ +P Sbjct: 4 KVLVVDDSS----FFRRRVSEIINSDPRLEVIDVAVNGKEAVEKAKSLKPDVITMDIEMP 59 Query: 442 VMDGWEATRQ-LKADPELQQTPVIALTA--HAMASDREKAIAAGCDDYDTKPIE------ 290 VMDG A R+ +KA P TP + ++ H A A+ AG D+ K E Sbjct: 60 VMDGISAVREIMKACP----TPTLMFSSLTHDGAKATLDALDAGALDFLPKKFEDIARNR 115 Query: 289 ---LPRLLSKIAQLLER*SHRREPWLPP*PSTAMKLRRQFLLFGVGTTFTAIAAISLSDV 119 + L +IA++ + S R P L ++ ++ R TT TA +A++ S V Sbjct: 116 DEAVSLLQKRIAEIARKKSFMRRPVLSSQSTSTVESR-------TATTRTATSALTASPV 168
>LIAR_BACSU (O32197) Sensory transduction protein liaR| Length = 211 Score = 48.9 bits (115), Expect = 1e-05 Identities = 50/148 (33%), Positives = 72/148 (48%), Gaps = 17/148 (11%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRL-TRKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVM 437 M ++LL++D+E L+ L + EV+ A DG+ GV A PD+ILMD+ + M Sbjct: 1 MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGM 60 Query: 436 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDY---DTKPIEL------- 287 DG EAT+Q+ EL +I LT+ I AG Y +K E+ Sbjct: 61 DGIEATKQICR--ELSDPKIIVLTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAA 118 Query: 286 ----PRLLSKIA-QLLER*SHRREPWLP 218 P+L SK+A ++L R H E LP Sbjct: 119 SKGEPKLESKVAGKVLSRLRHSGENALP 146
>SP0A_BACST (P52934) Stage 0 sporulation protein A| Length = 259 Score = 48.9 bits (115), Expect = 1e-05 Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRK-GFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 K+ + +DN + +L ++ + EV+ A++G + ++PD++L+D+ +P +DG Sbjct: 4 KVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDG 63 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 +++A E Q VI LTA +KA+ G + KP ++ L I Q+ Sbjct: 64 LAVLERIRAGFE-HQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQV 120
>GACA_PSEU2 (Q52376) Response regulator gacA (Global activator)| Length = 214 Score = 48.5 bits (114), Expect = 2e-05 Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 7/122 (5%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRK-----GFEVV-LAHDGAAGVDTARREQPDLILMDMS 449 M K+L+V+D+ D++ +TR G +VV A G + AR +PD++LMD+ Sbjct: 1 MIKVLVVDDH----DLVRTGITRMLADIDGLQVVGQADSGEESLKKARELKPDVVLMDVK 56 Query: 448 LPVMDGWEATRQ-LKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLS 272 +P + G EATR+ L++ P+++ V+A+T + + AG Y TK L ++ Sbjct: 57 MPGIGGLEATRKMLRSHPDIK---VVAVTVCEEDPFPTRLLQAGAAGYMTKGAGLAEMVQ 113 Query: 271 KI 266 I Sbjct: 114 AI 115
>RSSB_SERMA (Q8GP20) Swarming motility regulation protein rssB| Length = 219 Score = 48.5 bits (114), Expect = 2e-05 Identities = 36/118 (30%), Positives = 55/118 (46%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 ILLVED+ L R L GF + A + DL+L+D++LP DG + Sbjct: 3 ILLVEDDLQLGKALCRALELAGFNLCWVRLIADAENKLSSGGFDLMLLDLTLPDGDGLQK 62 Query: 421 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 +A Q P+I LTA ++ +G +D+ KP LP L+S++ + R Sbjct: 63 LIAWRAAG--QNIPIIILTARDRIESLVNSLDSGANDFLAKPFALPELISRVKAVNRR 118
>NTRC_SALTY (P41789) Nitrogen regulation protein NR(I)| Length = 469 Score = 48.5 bits (114), Expect = 2e-05 Identities = 30/121 (24%), Positives = 55/121 (45%) Frame = -3 Query: 589 EDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL 410 +D+ W +L R L G +G + + PD++L D+ +P MDG +Q+ Sbjct: 11 DDSSIRW-VLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQI 69 Query: 409 KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 230 K + PVI +TAH+ A G DY KP ++ ++ + + + +++ Sbjct: 70 KQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 Query: 229 P 227 P Sbjct: 128 P 128
>SP0F_BACTK (P52942) Sporulation initiation phosphotransferase F (EC 2.7.-.-)| (Stage 0 sporulation protein F) Length = 122 Score = 48.5 bits (114), Expect = 2e-05 Identities = 29/109 (26%), Positives = 55/109 (50%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 425 KIL+V+D +L ++G++ A +G +D +++ PDL+++DM +P MDG E Sbjct: 4 KILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPDLVVLDMKIPGMDGIE 63 Query: 424 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 278 + K E VI ++A+ ++A G + KP ++ + Sbjct: 64 IFKACKEIDE--SIKVILMSAYGELDMIQEAKDLGALMHFAKPFDIDEI 110
>ARCA_SHIFL (P0A9Q4) Aerobic respiration control protein arcA| Length = 238 Score = 48.1 bits (113), Expect = 2e-05 Identities = 35/118 (29%), Positives = 53/118 (44%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 IL+VED + L +G++V A DGA +L++MD++LP +G Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 Query: 421 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+L+ E ++ LT D+ + G DDY TKP L + LL R Sbjct: 66 ARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120
>ARCA_ECOLI (P0A9Q1) Aerobic respiration control protein arcA (Dye resistance| protein) Length = 238 Score = 48.1 bits (113), Expect = 2e-05 Identities = 35/118 (29%), Positives = 53/118 (44%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 IL+VED + L +G++V A DGA +L++MD++LP +G Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 Query: 421 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+L+ E ++ LT D+ + G DDY TKP L + LL R Sbjct: 66 ARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120
>ARCA_ECOL6 (P0A9Q2) Aerobic respiration control protein arcA| Length = 238 Score = 48.1 bits (113), Expect = 2e-05 Identities = 35/118 (29%), Positives = 53/118 (44%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 IL+VED + L +G++V A DGA +L++MD++LP +G Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 Query: 421 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+L+ E ++ LT D+ + G DDY TKP L + LL R Sbjct: 66 ARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120
>ARCA_ECO57 (P0A9Q3) Aerobic respiration control protein arcA| Length = 238 Score = 48.1 bits (113), Expect = 2e-05 Identities = 35/118 (29%), Positives = 53/118 (44%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 IL+VED + L +G++V A DGA +L++MD++LP +G Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 Query: 421 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 248 R+L+ E ++ LT D+ + G DDY TKP L + LL R Sbjct: 66 ARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120
>RPFG_XANC8 (Q4UU85) Response regulator rpfG| Length = 378 Score = 48.1 bits (113), Expect = 2e-05 Identities = 26/74 (35%), Positives = 41/74 (55%) Frame = -3 Query: 472 DLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPI 293 DL+L+D +P MDG E R+L+ P + P+I +T R+ A+ AG D+ KPI Sbjct: 75 DLLLLDYRMPGMDGLEFARRLRRLPSHRDIPIILITIVGDEPIRQAALEAGVIDFLVKPI 134 Query: 292 ELPRLLSKIAQLLE 251 L ++ + LL+ Sbjct: 135 RPRELRARCSNLLQ 148
>CHEB_SYMTH (Q67P67) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 362 Score = 47.8 bits (112), Expect = 3e-05 Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 4/107 (3%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDG 431 ++L+V+D+ +L+ L V+ A DG G++ + QPD++ +D+ +P +DG Sbjct: 10 RVLVVDDSAFMRKVLTELLESDPLITVVGTARDGQDGLEKVLQLQPDVVTLDIEMPRLDG 69 Query: 430 WEATRQLKADPELQQTPVIALTAHAM--ASDREKAIAAGCDDYDTKP 296 + R++ A + TPV+ +++H A +A+A G D+ KP Sbjct: 70 YGTLREIMA---RRPTPVVMVSSHTREGAEATIRALALGAVDFVAKP 113
>DCTR_BACSU (P96602) Probable C4-dicarboxylate response regulator dctR| Length = 226 Score = 47.8 bits (112), Expect = 3e-05 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 8/117 (6%) Frame = -3 Query: 604 KILLVEDN----EDNWDMLSRRLTRKGFEV-VLAHDGAAGVDTARREQPDLILMDMSLPV 440 K+LL+ED+ E N D ++ T KG V A +G G+ + EQPDL+++D+ +P Sbjct: 7 KVLLIEDDPMVQEVNKDFIT---TVKGVTVCATAGNGEEGMKLIKEEQPDLVILDVYMPK 63 Query: 439 MDGWEATRQLKADPELQQTPVIALTAHAMASDREK---AIAAGCDDYDTKPIELPRL 278 DG + ++++ + + VI ++A A D+E + G DY KP +L R+ Sbjct: 64 KDGIKTLQEIR--KQKLEVDVIVVSA---AKDKETISLMLQNGAVDYILKPFKLERM 115
>ACTR_RHIME (Q52913) Acid tolerance regulatory protein actR| Length = 194 Score = 47.8 bits (112), Expect = 3e-05 Identities = 37/138 (26%), Positives = 64/138 (46%) Frame = -3 Query: 601 ILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 422 +L+V+D+ L+R + +GF V +A A G+ A+ P ++D+ L G + Sbjct: 25 LLIVDDDTAFLRRLARAMEARGFAVEIAESVAEGIAKAKTRPPKHAVIDLRLSDGSGLDV 84 Query: 421 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*S 242 ++ T +I LT + + A+ G DY KP + +L A L++R Sbjct: 85 IEAIRG--RRDDTRMIVLTGYGNIATAVNAVKLGALDYLAKPADADDIL---AALIQRPG 139 Query: 241 HRREPWLPP*PSTAMKLR 188 R EP P P +A ++R Sbjct: 140 ERVEP--PENPMSADRVR 155
>GACA_PSEVI (P95582) Response regulator gacA (Global activator)| Length = 214 Score = 47.4 bits (111), Expect = 4e-05 Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 7/122 (5%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTRK-----GFEVV-LAHDGAAGVDTARREQPDLILMDMS 449 M ++L+V+D+ D++ +TR G +VV A G + AR +PD++LMD+ Sbjct: 1 MIRVLVVDDH----DLVRTGITRMLADIDGLQVVGQADSGEESLKKARELKPDVVLMDVK 56 Query: 448 LPVMDGWEATRQ-LKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLS 272 +P + G EATR+ L++ P+++ V+A+T + + AG Y TK L ++ Sbjct: 57 MPGIGGLEATRKLLRSHPDIK---VVAVTVCEEDPFPTRLLQAGAAGYMTKGAGLAEMVQ 113 Query: 271 KI 266 I Sbjct: 114 AI 115
>GACA_PSEAE (Q51373) Response regulator gacA (Global activator)| Length = 214 Score = 47.4 bits (111), Expect = 4e-05 Identities = 38/125 (30%), Positives = 67/125 (53%), Gaps = 7/125 (5%) Frame = -3 Query: 610 MTKILLVEDNEDNWDMLSRRLTR-----KGFEVVLAHD-GAAGVDTARREQPDLILMDMS 449 M K+L+V+D+ D++ +TR +G +VV D G + AR +PD++LMD+ Sbjct: 1 MIKVLVVDDH----DLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVK 56 Query: 448 LPVMDGWEATRQ-LKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLS 272 +P + G EATR+ L++ P+++ V+ +T + + AG Y TK L ++ Sbjct: 57 MPGIGGLEATRKLLRSQPDIK---VVVVTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQ 113 Query: 271 KIAQL 257 I Q+ Sbjct: 114 AIRQV 118
>CHEV_BACSU (P37599) Chemotaxis protein cheV| Length = 303 Score = 47.4 bits (111), Expect = 4e-05 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 10/123 (8%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVLAHDGA----------AGVDTARREQPDLILMD 455 K+++VED+ +L L G+ + + + A +T +Q D+I+ D Sbjct: 176 KLIIVEDSPLLMRLLQDELKEAGYNNIASFENGKEAYEYIMNLAENETDLSKQIDMIITD 235 Query: 454 MSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLL 275 + +P MDG T+ LK +P+ PV+ ++ R + G D+ +KP E+ L+ Sbjct: 236 IEMPKMDGHRLTKLLKENPKSSDVPVMIFSSLITDDLRHRGEVVGADEQISKP-EISDLI 294 Query: 274 SKI 266 K+ Sbjct: 295 KKV 297
>CHEB1_RALEJ (Q46V28) Chemotaxis response regulator protein-glutamate| methylesterase 1 (EC 3.1.1.61) Length = 341 Score = 47.0 bits (110), Expect = 5e-05 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Frame = -3 Query: 535 FEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAH 359 FE+V +A DG V A PD+ILMD+ +PVMDG EATR++ A P++ +T Sbjct: 26 FEIVWVAGDGEQAVQLAASHTPDVILMDLLMPVMDGVEATRRIMA---ATPCPIVVVTTD 82 Query: 358 AMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 + + A G D ++ P L A+L Sbjct: 83 LGRNATQVFDAMGHGAIDA--VDTPTLTESDAKL 114
>SP0A_BACCI (P52931) Stage 0 sporulation protein A (Fragment)| Length = 210 Score = 47.0 bits (110), Expect = 5e-05 Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 2/118 (1%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRL-TRKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 K+ +V+DN + +L + + EV+ +AH+G ++ + +PD++++D+ +P +DG Sbjct: 5 KVCIVDDNRELVGLLEEYIDAQDDMEVIGVAHNGQECLELVEQLEPDVMVLDIIMPHIDG 64 Query: 430 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 257 +++ VI LTA +KA+ G + KP ++ L S I Q+ Sbjct: 65 LAVLERMR-QMNKPMPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMEYLASHIRQV 121
>CHEB1_VIBVY (Q7MIQ5) Chemotaxis response regulator protein-glutamate| methylesterase of group 1 operon (EC 3.1.1.61) Length = 376 Score = 47.0 bits (110), Expect = 5e-05 Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 4/109 (3%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKG-FEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 K+L+V+D+ +S + + EV+ +A +G V+ A+R +PD+I MD+ +PVMDG Sbjct: 4 KVLVVDDSSFFRRRVSEIINAESRLEVIDVAVNGKEAVEKAKRLKPDVITMDIEMPVMDG 63 Query: 430 WEATRQLKADPELQQTPVIALTA--HAMASDREKAIAAGCDDYDTKPIE 290 A R++ A TP++ ++ H A A+ AG D+ K E Sbjct: 64 ISAVREIMAS---VPTPILMFSSLTHDGAKATLDALDAGALDFLPKKFE 109
>CHEB1_VIBVU (Q8DB67) Chemotaxis response regulator protein-glutamate| methylesterase of group 1 operon (EC 3.1.1.61) Length = 376 Score = 47.0 bits (110), Expect = 5e-05 Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 4/109 (3%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKG-FEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 431 K+L+V+D+ +S + + EV+ +A +G V+ A+R +PD+I MD+ +PVMDG Sbjct: 4 KVLVVDDSSFFRRRVSEIINAESRLEVIDVAVNGKEAVEKAKRLKPDVITMDIEMPVMDG 63 Query: 430 WEATRQLKADPELQQTPVIALTA--HAMASDREKAIAAGCDDYDTKPIE 290 A R++ A TP++ ++ H A A+ AG D+ K E Sbjct: 64 ISAVREIMAS---VPTPILMFSSLTHDGAKATLDALDAGALDFLPKKFE 109
>CHEB3_PSESM (Q886S8) Chemotaxis response regulator protein-glutamate| methylesterase of group 3 operon (EC 3.1.1.61) Length = 336 Score = 47.0 bits (110), Expect = 5e-05 Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 7/126 (5%) Frame = -3 Query: 604 KILLVEDNEDNWDMLSRRLTRKGFEVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDG 431 KI +V D + L R L + V+ A +GA V + + PDLILMD+ +PVMDG Sbjct: 2 KIAIVNDMPMAIEALRRALAFEPAHQVIWVAANGADAVQRSIEQTPDLILMDLIMPVMDG 61 Query: 430 WEATRQLKADPELQQTP--VIALTAHAMASDREKAIAAG---CDDYDTKPIELPRLLSKI 266 EATR++ A +TP ++ +T + R A G D DT I P Sbjct: 62 VEATRRIMA-----ETPCAIVIVTVDREQNMRRVFEAMGHGALDVVDTPAIGGPNPREAA 116 Query: 265 AQLLER 248 A LL + Sbjct: 117 APLLRK 122 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,215,032 Number of Sequences: 219361 Number of extensions: 1907397 Number of successful extensions: 7837 Number of sequences better than 10.0: 488 Number of HSP's better than 10.0 without gapping: 7246 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7645 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
