ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart14e11 |
|---|---|
| Clone Library Name | barley_pub |
>PLED_CAUCR (Q9A5I5) Response regulator pleD (Stalked cell| differentiation-controlling protein) [Includes: Diguanylate cyclase (EC 4.6.1.-) (DGC)] Length = 454 Score = 82.8 bits (203), Expect = 7e-16 Identities = 43/116 (37%), Positives = 69/116 (59%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +V+D E N +L +LT + +EV A DG + A R+ PD+IL+D+ +P MDG+ Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFT 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 R+LK DP + PV+ +TA DR + + +G D+ TKPI+ L +++ L Sbjct: 64 VCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSL 119 Score = 38.1 bits (87), Expect = 0.020 Identities = 28/124 (22%), Positives = 59/124 (47%) Frame = -3 Query: 601 GLGMTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPV 422 GLG ++ +V+DNE ++ L + V+ + A + DL++++ + Sbjct: 151 GLG-GRVLIVDDNERQAQRVAAELGVEHRPVIESDPEKAKISAGG--PVDLVIVNAAAKN 207 Query: 421 MDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 242 DG T L+++ +Q PV+A+ KA+ G +D ++PI+ L +++ Sbjct: 208 FDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKT 267 Query: 241 LLER 230 ++R Sbjct: 268 QIQR 271
>BARA_ECOLI (P0AEC5) Signal transduction histidine-protein kinase barA (EC| 2.7.13.3) Length = 918 Score = 82.8 bits (203), Expect = 7e-16 Identities = 50/113 (44%), Positives = 63/113 (55%) Frame = -3 Query: 598 LGMTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVM 419 L MT + V+DN N ++ L V L G V+ A++ DLILMD+ +P M Sbjct: 666 LAMT-VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDM 724 Query: 418 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 260 DG A + P QQTPVIA+TAHAMA +EK + AG DY KPIE RL Sbjct: 725 DGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>BARA_ECOL6 (P0AEC6) Signal transduction histidine-protein kinase barA (EC| 2.7.13.3) Length = 918 Score = 82.8 bits (203), Expect = 7e-16 Identities = 50/113 (44%), Positives = 63/113 (55%) Frame = -3 Query: 598 LGMTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVM 419 L MT + V+DN N ++ L V L G V+ A++ DLILMD+ +P M Sbjct: 666 LAMT-VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDM 724 Query: 418 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 260 DG A + P QQTPVIA+TAHAMA +EK + AG DY KPIE RL Sbjct: 725 DGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>BARA_ECO57 (P0AEC7) Signal transduction histidine-protein kinase barA (EC| 2.7.13.3) Length = 918 Score = 82.8 bits (203), Expect = 7e-16 Identities = 50/113 (44%), Positives = 63/113 (55%) Frame = -3 Query: 598 LGMTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVM 419 L MT + V+DN N ++ L V L G V+ A++ DLILMD+ +P M Sbjct: 666 LAMT-VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDM 724 Query: 418 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 260 DG A + P QQTPVIA+TAHAMA +EK + AG DY KPIE RL Sbjct: 725 DGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>PILH_PSEAE (P43501) Protein pilH| Length = 121 Score = 82.4 bits (202), Expect = 9e-16 Identities = 44/119 (36%), Positives = 69/119 (57%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 M +I +V+D+ L+ L + G +V+ A +G GV AR+E+PD++LMD+ +P ++G Sbjct: 1 MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNG 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236 ++ATRQL D E PVI +T +D+ G DY TKP++ LL I +L Sbjct: 61 FQATRQLTKDAETSAIPVIIVTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVL 119
>BARA_SHIFL (P59342) Signal transduction histidine-protein kinase barA (EC| 2.7.13.3) Length = 918 Score = 81.3 bits (199), Expect = 2e-15 Identities = 49/113 (43%), Positives = 63/113 (55%) Frame = -3 Query: 598 LGMTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVM 419 L MT + V+DN N ++ L V L G V+ A++ DLILMD+ +P M Sbjct: 666 LAMT-VMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDM 724 Query: 418 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 260 DG A + P +QTPVIA+TAHAMA +EK + AG DY KPIE RL Sbjct: 725 DGIRACELIHQLPHQRQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>GACS_PSESY (P48027) Sensor protein gacS (EC 2.7.13.3)| Length = 907 Score = 80.9 bits (198), Expect = 3e-15 Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 3/107 (2%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 ++ V+DN N ++ L G EVV G A V+ ++E DL+LMD+ +P MDG + Sbjct: 658 RVLCVDDNPANLLLVQTLLEDMGAEVVAVEGGYAAVNAVQQEAFDLVLMDVQMPGMDGRQ 717 Query: 406 ATRQLKA-DPELQQT--PVIALTAHAMASDREKAIAAGCDDYDTKPI 275 AT ++A + E Q+ P++ALTAHAMA+++ + +G DDY TKPI Sbjct: 718 ATEAIRAWEAERNQSSLPIVALTAHAMANEKRSLLQSGMDDYLTKPI 764
>PHOB_RHIME (Q52990) Phosphate regulon transcriptional regulatory protein phoB| Length = 227 Score = 80.5 bits (197), Expect = 4e-15 Identities = 43/121 (35%), Positives = 65/121 (53%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 + KI +VED E +L L +GFEV G + PDL+++D LP + G Sbjct: 2 LPKIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSG 61 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 E R+L+ PE ++ P+I LTA S+R + +A G DDY KP P L++++ +L Sbjct: 62 IELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLR 121 Query: 232 R 230 R Sbjct: 122 R 122
>PRRA_MYCTU (P0A5Z6) Transcriptional regulatory protein prrA| Length = 233 Score = 80.5 bits (197), Expect = 4e-15 Identities = 44/124 (35%), Positives = 67/124 (54%) Frame = -3 Query: 601 GLGMTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPV 422 G+ ++ +V+D+ D L R L GFEV A DGA + +A +PD I++D+++PV Sbjct: 4 GVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPV 63 Query: 421 MDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 242 +DG L+A PV L+A + DR + AG DDY KP L L++++ Sbjct: 64 LDGVSVVTALRAMD--NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKA 121 Query: 241 LLER 230 LL R Sbjct: 122 LLRR 125
>PRRA_MYCBO (P0A5Z7) Transcriptional regulatory protein prrA| Length = 233 Score = 80.5 bits (197), Expect = 4e-15 Identities = 44/124 (35%), Positives = 67/124 (54%) Frame = -3 Query: 601 GLGMTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPV 422 G+ ++ +V+D+ D L R L GFEV A DGA + +A +PD I++D+++PV Sbjct: 4 GVTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPV 63 Query: 421 MDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 242 +DG L+A PV L+A + DR + AG DDY KP L L++++ Sbjct: 64 LDGVSVVTALRAMD--NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKA 121 Query: 241 LLER 230 LL R Sbjct: 122 LLRR 125
>YYCF_BACSU (P37478) Transcriptional regulatory protein yycF| Length = 235 Score = 79.7 bits (195), Expect = 6e-15 Identities = 45/119 (37%), Positives = 66/119 (55%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI +V+D + D+L L ++G+EV AHDG V+ QPDLIL+D+ LP DG E Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVE 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+++ ++ P+I LTA D+ + G DDY TKP LL+++ L R Sbjct: 64 VCREVRKKYDM---PIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119
>PRRA_MYCLE (Q50136) Transcriptional regulatory protein prrA| Length = 233 Score = 79.7 bits (195), Expect = 6e-15 Identities = 44/124 (35%), Positives = 66/124 (53%) Frame = -3 Query: 601 GLGMTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPV 422 G+ ++ +V+D+ D L R L GFEV A DGA + A +PD I++D+++PV Sbjct: 4 GVSSPRVLVVDDDSDVLASLERGLRLSGFEVSTAIDGAEALRNATETRPDAIVLDINMPV 63 Query: 421 MDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 242 +DG L+A PV L+A + DR + AG DDY KP L L++++ Sbjct: 64 LDGVSVVTALRAMD--NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKA 121 Query: 241 LLER 230 LL R Sbjct: 122 LLRR 125
>YXDJ_BACSU (P42421) Sensory transduction protein yxdJ| Length = 229 Score = 79.3 bits (194), Expect = 8e-15 Identities = 44/121 (36%), Positives = 71/121 (58%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 M KI +VED+ED +L L + G++ V+A D A +D RE+PD++L+D++LP DG Sbjct: 1 MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDG 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 + RQ++ + +P+I ++A + D+ AI G DDY KP +L+KI + Sbjct: 61 YYWCRQIR---QHSTSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIR 117 Query: 232 R 230 R Sbjct: 118 R 118
>ARLR_STAAN (Q99U73) Response regulator arlR| Length = 214 Score = 78.6 bits (192), Expect = 1e-14 Identities = 42/121 (34%), Positives = 69/121 (57%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 MT+I +VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 232 R 230 R Sbjct: 118 R 118
>ARLR_STAAW (P0C001) Response regulator arlR| Length = 219 Score = 78.6 bits (192), Expect = 1e-14 Identities = 42/121 (34%), Positives = 69/121 (57%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 MT+I +VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 232 R 230 R Sbjct: 118 R 118
>ARLR_STAAU (Q9KJN4) Response regulator arlR| Length = 219 Score = 78.6 bits (192), Expect = 1e-14 Identities = 42/121 (34%), Positives = 69/121 (57%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 MT+I +VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 232 R 230 R Sbjct: 118 R 118
>ARLR_STAAS (Q6G9E6) Response regulator arlR| Length = 219 Score = 78.6 bits (192), Expect = 1e-14 Identities = 42/121 (34%), Positives = 69/121 (57%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 MT+I +VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 232 R 230 R Sbjct: 118 R 118
>ARLR_STAAR (Q6GGZ3) Response regulator arlR| Length = 219 Score = 78.6 bits (192), Expect = 1e-14 Identities = 42/121 (34%), Positives = 69/121 (57%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 MT+I +VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 232 R 230 R Sbjct: 118 R 118
>ARLR_STAAM (P0C000) Response regulator arlR| Length = 219 Score = 78.6 bits (192), Expect = 1e-14 Identities = 42/121 (34%), Positives = 69/121 (57%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 MT+I +VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 232 R 230 R Sbjct: 118 R 118
>ARLR_STAAC (Q5HG04) Response regulator arlR| Length = 219 Score = 78.6 bits (192), Expect = 1e-14 Identities = 42/121 (34%), Positives = 69/121 (57%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 MT+I +VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G Sbjct: 1 MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSING 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 E R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L Sbjct: 61 LEICRKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILR 117 Query: 232 R 230 R Sbjct: 118 R 118
>YEDW_ECOLI (P76340) Probable transcriptional regulatory protein yedW| Length = 223 Score = 77.4 bits (189), Expect = 3e-14 Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 1/117 (0%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI L+EDN+ + +++ L+ G+ + DG G+ A ++ LI++D+ LP MDGW+ Sbjct: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI-AQL 239 + L+ +QTPVI LTA DR + + +G +DY KP LL+++ AQL Sbjct: 62 ILQTLRT---AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQL 115
>IRLR_BURPS (O31395) Transcriptional activator protein irlR| Length = 229 Score = 77.4 bits (189), Expect = 3e-14 Identities = 42/119 (35%), Positives = 60/119 (50%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +VED L + LT GF DG G+ A E+ DLI++D+ LP DGW Sbjct: 2 RILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGWT 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 +L+ TPV+ LTA DR K + G DDY KP + L++++ +L R Sbjct: 62 VLERLR---RAHSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRR 117
>PCOR_ECOLI (Q47456) Transcriptional regulatory protein pcoR| Length = 226 Score = 77.0 bits (188), Expect = 4e-14 Identities = 40/121 (33%), Positives = 66/121 (54%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 M +I +VED + L + L +G++ L ++G G+ A + Q DLI++D+ LP +DG Sbjct: 1 MQRILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDG 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 W+ L+ + PV+ LTA D+ K + G DDY KP + L++++ LL Sbjct: 61 WQIISALRESG--HEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLR 118 Query: 232 R 230 R Sbjct: 119 R 119
>COPR_PSESM (Q02540) Transcriptional activator protein copR| Length = 227 Score = 76.6 bits (187), Expect = 5e-14 Identities = 44/119 (36%), Positives = 60/119 (50%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 K+ + ED L + L GF V G VD A E DL+++D+ +P +DGWE Sbjct: 2 KLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGWE 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+L+ Q PV+ LTA DR K + G DDY KP L LL+++ LL R Sbjct: 62 VIRRLRTAG--QPVPVLFLTARDGVDDRVKGLELGADDYLVKPFALSELLARVRTLLRR 118
>REGX3_MYCSM (Q9F868) Sensory transduction protein regX3| Length = 228 Score = 75.9 bits (185), Expect = 9e-14 Identities = 42/121 (34%), Positives = 64/121 (52%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 MT + +VED E D L+ L ++GFE + DG + + R D++L+D+ LP M G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSG 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 + +QL+A PVI +TA D+ + G DDY TKP L+++I +L Sbjct: 61 TDVCKQLRA---RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 232 R 230 R Sbjct: 118 R 118
>REGX3_MYCTU (Q11156) Sensory transduction protein regX3| Length = 227 Score = 75.9 bits (185), Expect = 9e-14 Identities = 43/121 (35%), Positives = 64/121 (52%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 MT + +VED E D L+ L ++GFE + DG A + R D++L+D+ LP M G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 + +QL+A PVI +TA D+ + G DDY TKP L+++I +L Sbjct: 61 TDVCKQLRA---RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 232 R 230 R Sbjct: 118 R 118
>REGX3_MYCBO (O07130) Sensory transduction protein regX3| Length = 227 Score = 75.9 bits (185), Expect = 9e-14 Identities = 43/121 (35%), Positives = 64/121 (52%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 MT + +VED E D L+ L ++GFE + DG A + R D++L+D+ LP M G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 + +QL+A PVI +TA D+ + G DDY TKP L+++I +L Sbjct: 61 TDVCKQLRA---RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 117 Query: 232 R 230 R Sbjct: 118 R 118
>PHOP_BACSU (P13792) Alkaline phosphatase synthesis transcriptional regulatory| protein phoP Length = 240 Score = 75.9 bits (185), Expect = 9e-14 Identities = 41/119 (34%), Positives = 65/119 (54%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI +V+D E +L L R G++V+ A DG + A E+PDLI++D+ LP +DG E Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 +QL+ + P++ LTA D+ + G DDY TKP + +++ +L R Sbjct: 64 VCKQLR--QQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120
>YKOG_BACSU (O34903) Hypothetical sensory transduction protein ykoG| Length = 228 Score = 75.5 bits (184), Expect = 1e-13 Identities = 43/118 (36%), Positives = 63/118 (53%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 I +VED E +L L +G+ V + H+G G+D A L+L+D+ LP + G E Sbjct: 6 ILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLEV 65 Query: 403 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+L+ QTPVI LTA D+ + G +DY TKP E+ LL++I L + Sbjct: 66 LRRLRKTD--SQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQ 121
>CUSR_ECOLI (P0ACZ8) Transcriptional regulatory protein cusR| Length = 227 Score = 75.5 bits (184), Expect = 1e-13 Identities = 42/119 (35%), Positives = 64/119 (53%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 K+ +VED + + L++ LT GF V LA +G G A DLI++D+ LP ++GW+ Sbjct: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R L++ + P++ LTA R K + G DDY KP LL+++ LL R Sbjct: 62 IVRMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>CUSR_ECOL6 (P0ACZ9) Transcriptional regulatory protein cusR| Length = 227 Score = 75.5 bits (184), Expect = 1e-13 Identities = 42/119 (35%), Positives = 64/119 (53%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 K+ +VED + + L++ LT GF V LA +G G A DLI++D+ LP ++GW+ Sbjct: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R L++ + P++ LTA R K + G DDY KP LL+++ LL R Sbjct: 62 IVRMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>CUSR_ECO57 (P0AD00) Transcriptional regulatory protein cusR| Length = 227 Score = 75.5 bits (184), Expect = 1e-13 Identities = 42/119 (35%), Positives = 64/119 (53%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 K+ +VED + + L++ LT GF V LA +G G A DLI++D+ LP ++GW+ Sbjct: 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWD 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R L++ + P++ LTA R K + G DDY KP LL+++ LL R Sbjct: 62 IVRMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>CZCR_RALME (Q44006) Transcriptional activator protein czcR| Length = 225 Score = 75.5 bits (184), Expect = 1e-13 Identities = 40/119 (33%), Positives = 65/119 (54%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 ++ +VED + L + L+ GF V +A++G G+ A D+I++D+ LP MDGW Sbjct: 2 RVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGWT 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 + +++ E TPV+ LTA +DR + G DDY KP LL++I + L + Sbjct: 62 VIKSIRSKSE---TPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQ 117
>CPXR_SHIFL (P0AE90) Transcriptional regulatory protein cpxR| Length = 232 Score = 75.5 bits (184), Expect = 1e-13 Identities = 48/127 (37%), Positives = 69/127 (54%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 M KI LV+D+ + +L L +GF V++AHDG +D + DL+L+D+ +P +G Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 + LKA + QTPVI LTA DR + G DDY KP L+++I +L Sbjct: 60 IDT---LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 232 R*SHRRE 212 R SH E Sbjct: 117 R-SHWSE 122
>CPXR_ECOLI (P0AE88) Transcriptional regulatory protein cpxR| Length = 232 Score = 75.5 bits (184), Expect = 1e-13 Identities = 48/127 (37%), Positives = 69/127 (54%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 M KI LV+D+ + +L L +GF V++AHDG +D + DL+L+D+ +P +G Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 + LKA + QTPVI LTA DR + G DDY KP L+++I +L Sbjct: 60 IDT---LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 232 R*SHRRE 212 R SH E Sbjct: 117 R-SHWSE 122
>CPXR_ECO57 (P0AE89) Transcriptional regulatory protein cpxR| Length = 232 Score = 75.5 bits (184), Expect = 1e-13 Identities = 48/127 (37%), Positives = 69/127 (54%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 M KI LV+D+ + +L L +GF V++AHDG +D + DL+L+D+ +P +G Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 + LKA + QTPVI LTA DR + G DDY KP L+++I +L Sbjct: 60 IDT---LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 Query: 232 R*SHRRE 212 R SH E Sbjct: 117 R-SHWSE 122
>YSO1_PLEBO (P51586) Hypothetical 14.6 kDa protein in sodA1 3'region (ORF131)| Length = 131 Score = 75.1 bits (183), Expect = 1e-13 Identities = 40/119 (33%), Positives = 68/119 (57%) Frame = -3 Query: 598 LGMTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVM 419 L I +V+D+ D D+L L +G V +A + + RE P L++ D+++P M Sbjct: 4 LAQMDILVVDDDPDTRDLLRFMLEDEGAIVTVAPNAKEALSLLERELPKLLVSDVAMPEM 63 Query: 418 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 242 DG+E +++ P+ + P IALTA+A DR+ A+ +G +DY TKP++ L+ + Q Sbjct: 64 DGFELIGRVRELPKGETLPAIALTAYAREEDRQAALRSGFNDYLTKPVDPLELIRLVQQ 122
>SILR_SALTY (Q9ZHD3) Probable transcriptional regulatory protein silR| Length = 228 Score = 75.1 bits (183), Expect = 1e-13 Identities = 43/119 (36%), Positives = 64/119 (53%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI +VED+ + LS+ LT GF V A +G G A + DL+++D+ LP ++GW+ Sbjct: 2 KILIVEDDIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWD 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R L++ + PV+ LTA R K + G DDY KP LL+++ LL R Sbjct: 62 IIRMLRSAG--KGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>YCF27_PORAE (P28835) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 240 Score = 73.6 bits (179), Expect = 4e-13 Identities = 38/119 (31%), Positives = 68/119 (57%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI +++D +L RL+ G++V+ A DG + +RE P+L+++D+ +P +DG+ Sbjct: 5 KILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFKREHPNLVVLDLMMPKLDGYG 64 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 ++L+ + ++ P+I LTA + SDR + G DDY KP L ++I +L R Sbjct: 65 VCQELRKESDV---PIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRR 120
>YCLJ_BACSU (P94413) Hypothetical sensory transduction protein yclJ| Length = 227 Score = 72.4 bits (176), Expect = 1e-12 Identities = 42/119 (35%), Positives = 59/119 (49%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI ++EDN M ++GFE HDG G E DLI++D+ LP MDG Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+++ E P+I LTA SD+ G DDY TKP L+++I ++ R Sbjct: 62 ICRKIR---ETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRR 117
>YCF27_CYAPA (P48259) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 239 Score = 72.0 bits (175), Expect = 1e-12 Identities = 40/119 (33%), Positives = 66/119 (55%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI +V+D +L RL+ G+EVV A DG + + E P+L+++D+ +P +DG+ Sbjct: 7 KILVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLEHPNLVVLDVMMPKLDGYG 66 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 ++L+ + ++ P+I LTA +DR + G DDY KP L ++I LL R Sbjct: 67 VCQELRKESDI---PIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRR 122
>PFER_PSEAE (Q04803) Transcriptional activator protein pfeR| Length = 305 Score = 72.0 bits (175), Expect = 1e-12 Identities = 42/119 (35%), Positives = 62/119 (52%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 ++ LVED+ + L R+GF V + DG+ G++ A RE DL+L+D+ LP +DG Sbjct: 79 RLLLVEDDPRLREDLDAHFRRRGFRVTVCGDGSHGLEAAGREAFDLVLLDIMLPGLDGLA 138 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 L+ + Q TPV+ ++A DR G DDY KP L L ++ LL R Sbjct: 139 LLESLRRE---QATPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAELDARTDALLRR 194
>AFSQ1_STRCO (Q04942) Transcriptional regulatory protein afsQ1| Length = 225 Score = 72.0 bits (175), Expect = 1e-12 Identities = 42/121 (34%), Positives = 66/121 (54%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 M + L+ED++ L LTR+G V A G G+ R ++PDLI++D+ LP +DG Sbjct: 1 MPSLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDG 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 +E R+++ Q P+I LTA D + +G DDY KP++ L ++I +L Sbjct: 61 FEVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLR 117 Query: 232 R 230 R Sbjct: 118 R 118
>YCF27_GUITH (O78428) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 254 Score = 72.0 bits (175), Expect = 1e-12 Identities = 37/119 (31%), Positives = 66/119 (55%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 K+ +V+D +L RL+ G+ VV A DG ++ +E PD++++D+ +P +DG+ Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 ++++ D ++ P+I LTA +DR + G DDY KP L ++I +L R Sbjct: 76 VCQEIRKDSDV---PIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRR 131
>TCTD_SALTY (P22104) Transcriptional regulatory protein tctD| Length = 224 Score = 72.0 bits (175), Expect = 1e-12 Identities = 42/119 (35%), Positives = 62/119 (52%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 ++ L EDN + L + L + GF V DG A E L ++D+++P MDG E Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGLE 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 ++L+ Q PV+ LTA + +DR K + G DDY KP EL L +++ LL R Sbjct: 62 VVQRLRKRG--QTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRR 118
>YRKP_BACSU (P54443) Hypothetical sensory transduction protein yrkP| Length = 231 Score = 71.6 bits (174), Expect = 2e-12 Identities = 39/119 (32%), Positives = 66/119 (55%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +VED+ED D+L LTR G+EV+ A DG + + DL+++D+ +P + G E Sbjct: 4 RILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQLV-NDSLDLVILDIMMPGISGIE 62 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 + ++ + P++ LTA + D+ + + AG DDY TKP L +++ L R Sbjct: 63 TCQHIR---KSSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRR 118
>YCF27_PORPU (P51358) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 243 Score = 71.2 bits (173), Expect = 2e-12 Identities = 39/119 (32%), Positives = 65/119 (54%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI +V+D +L RLT G+EV+ A +G + R+E P L+++D+ +P +DG+ Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 ++L+ + ++ P+I LTA DR + G DDY KP L ++I +L R Sbjct: 67 VCQELRKESDV---PIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122
>PHOB_SHIFL (P45607) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 70.5 bits (171), Expect = 4e-12 Identities = 40/119 (33%), Positives = 61/119 (51%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +VED +M+ L + GF+ V A D + V+ PDLIL+D LP G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 + LK + + PV+ LTA DR + + G DDY TKP L+++I ++ R Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>PHOB_SHIDY (P45606) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 70.5 bits (171), Expect = 4e-12 Identities = 40/119 (33%), Positives = 61/119 (51%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +VED +M+ L + GF+ V A D + V+ PDLIL+D LP G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 + LK + + PV+ LTA DR + + G DDY TKP L+++I ++ R Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>PHOB_ECOLI (P0AFJ5) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 70.5 bits (171), Expect = 4e-12 Identities = 40/119 (33%), Positives = 61/119 (51%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +VED +M+ L + GF+ V A D + V+ PDLIL+D LP G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 + LK + + PV+ LTA DR + + G DDY TKP L+++I ++ R Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>PHOB_ECO57 (P0AFJ6) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 70.5 bits (171), Expect = 4e-12 Identities = 40/119 (33%), Positives = 61/119 (51%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +VED +M+ L + GF+ V A D + V+ PDLIL+D LP G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 + LK + + PV+ LTA DR + + G DDY TKP L+++I ++ R Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>PHOB_KLEPN (P45605) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 70.1 bits (170), Expect = 5e-12 Identities = 40/119 (33%), Positives = 61/119 (51%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +VED +M+ L + GF+ V A D + V+ PDLIL+D LP G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQ 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 + LK + + PV+ LTA DR + + G DDY TKP L+++I ++ R Sbjct: 64 FIKLLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>CREB_ECOLI (P08368) Transcriptional regulatory protein creB| Length = 229 Score = 69.3 bits (168), Expect = 8e-12 Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 1/119 (0%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 + LVED + D L L ++GF V + G +D AR++ PD++++D+ LP + G+E Sbjct: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 Query: 403 TRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 RQL A P L PV+ LTA + DR + G DDY KP + +++ LL R Sbjct: 66 CRQLLALHPAL---PVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>MTRA_MYCTU (P0A5Z4) DNA-binding response regulator mtrA| Length = 225 Score = 68.6 bits (166), Expect = 1e-11 Identities = 38/119 (31%), Positives = 64/119 (53%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +V+D+ +ML+ L +GF+ + DG + R +PDL+L+D+ LP M+G + Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R L+AD P++ LTA D + +G DDY KP + L++++ L R Sbjct: 64 VCRVLRAD---SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 119
>MTRA_MYCPA (Q93CB8) DNA-binding response regulator mtrA| Length = 225 Score = 68.6 bits (166), Expect = 1e-11 Identities = 38/119 (31%), Positives = 64/119 (53%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +V+D+ +ML+ L +GF+ + DG + R +PDL+L+D+ LP M+G + Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R L+AD P++ LTA D + +G DDY KP + L++++ L R Sbjct: 64 VCRVLRAD---SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 119
>MTRA_MYCLE (Q9CCJ2) DNA-binding response regulator mtrA| Length = 225 Score = 68.6 bits (166), Expect = 1e-11 Identities = 38/119 (31%), Positives = 64/119 (53%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +V+D+ +ML+ L +GF+ + DG + R +PDL+L+D+ LP M+G + Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R L+AD P++ LTA D + +G DDY KP + L++++ L R Sbjct: 64 VCRVLRAD---SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 119
>MTRA_MYCBO (P0A5Z5) DNA-binding response regulator mtrA| Length = 225 Score = 68.6 bits (166), Expect = 1e-11 Identities = 38/119 (31%), Positives = 64/119 (53%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +V+D+ +ML+ L +GF+ + DG + R +PDL+L+D+ LP M+G + Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R L+AD P++ LTA D + +G DDY KP + L++++ L R Sbjct: 64 VCRVLRAD---SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 119
>ATOC_ECOLI (Q06065) Acetoacetate metabolism regulatory protein atoC| (Ornithine/arginine decarboxylase inhibitor) (Ornithine decarboxylase antizyme) Length = 461 Score = 68.2 bits (165), Expect = 2e-11 Identities = 39/127 (30%), Positives = 70/127 (55%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 + +I +V+D ++ MLS +GFE A++G + PD++LMD+ +P MDG Sbjct: 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDG 63 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 +A +++++ +TPVI +TA+A +A+ G DY KP +L L + + L+ Sbjct: 64 IKALKEMRSHE--TRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 Query: 232 R*SHRRE 212 S ++E Sbjct: 122 LQSMKKE 128
>MCS4_SCHPO (P87323) Response regulator mcs4 (Mitotic catastrophe suppressor 4)| Length = 522 Score = 68.2 bits (165), Expect = 2e-11 Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 26/140 (18%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 + +VEDN N +L + ++ +A DG ++ +++ LILMD+ LP M G E Sbjct: 364 VLIVEDNIINQKILETFMKKRNISSEVAKDGLEALEKWKKKSFHLILMDIQLPTMSGIEV 423 Query: 403 TRQLKADPELQ------------------------QTPVI--ALTAHAMASDREKAIAAG 302 T++++ L Q+PVI ALTA ++ +DR +A+AAG Sbjct: 424 TQEIRRLERLNAIGVGAPKLTQPIPEKDQLNENKFQSPVIIVALTASSLMADRNEALAAG 483 Query: 301 CDDYDTKPIELPRLLSKIAQ 242 C+D+ TKP+ L L KI + Sbjct: 484 CNDFLTKPVSLVWLEKKITE 503
>YCF29_PORPU (P51343) Probable transcriptional regulator ycf29| Length = 209 Score = 68.2 bits (165), Expect = 2e-11 Identities = 40/118 (33%), Positives = 63/118 (53%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 + LVE++ + L +GF V +A +G A + + DLI+ D+ +P++DG+E Sbjct: 5 LMLVENDTVLSKAIQEYLIDQGFNVDIALNGLEAFQLANKYKFDLIISDIIMPIIDGYEL 64 Query: 403 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 +L+ +L + PVI LTA M DR K GC Y +KP + L+S I L+ R Sbjct: 65 LEKLRKIDKLAKIPVIFLTAKGMTKDRIKGYNMGCYGYLSKPFDPEELVSLIKNLIYR 122
>YCF27_GALSU (P28257) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 255 Score = 67.8 bits (164), Expect = 2e-11 Identities = 36/119 (30%), Positives = 66/119 (55%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI + +D +L RL+ G+EV+ A DG + + +E P+L+++D+ +P +DG+ Sbjct: 9 KILIADDESSIRRILETRLSIIGYEVLTAPDGRSALFLFHKEHPNLVVLDVMMPKIDGYG 68 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 ++++ + ++ P+I LTA +DR + G DDY KP L ++I +L R Sbjct: 69 VCQEIRKESDI---PIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRR 124
>CHVI_AGRTU (Q07783) Transcriptional regulatory protein chvI| Length = 241 Score = 67.4 bits (163), Expect = 3e-11 Identities = 42/125 (33%), Positives = 63/125 (50%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 M I LV+D+ + +S L R+G+ V DGA+ VD P L + D+ +P MDG Sbjct: 1 MQTIALVDDDRNILTSVSIALEREGYRVETYTDGASAVDGLIARPPQLAIFDIKMPRMDG 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 E R+L+ ++ PVI LT+ D + G DD+ TKP L+ ++ +L Sbjct: 61 MELLRRLRQKSDI---PVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILR 117 Query: 232 R*SHR 218 R S R Sbjct: 118 RASSR 122
>EVGS_ECOLI (P30855) Sensor protein evgS precursor (EC 2.7.13.3)| Length = 1197 Score = 67.0 bits (162), Expect = 4e-11 Identities = 38/115 (33%), Positives = 67/115 (58%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 I + +D+ N +L R+L G++V A DG + + DL++ D+++P MDG+E Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFEL 1020 Query: 403 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 TR+L+ + P+ LTA+A A++REK ++ G + KP+ L L + ++QL Sbjct: 1021 TRKLR--EQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQL 1073
>MAK1_SCHPO (Q9P7Q7) Peroxide stress-activated histidine kinase mak1 (EC| 2.7.13.3) (Mcs4-associated kinase 1) (His-Asp phosphorelay kinase phk3) Length = 1639 Score = 66.6 bits (161), Expect = 5e-11 Identities = 43/122 (35%), Positives = 69/122 (56%), Gaps = 6/122 (4%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPD---LILMDMSLPVMDG 413 + L EDN N ++SR L R G + + DG V+ +RE+P+ LILMD+ +PVMDG Sbjct: 1508 VLLAEDNIINIKVISRYLERIGVKFKVTMDGLQCVEEWKREKPNFYSLILMDLQMPVMDG 1567 Query: 412 WEA---TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 242 ++A R+ + + + + P++AL+A+A+ +G D Y KPI L L I+ Sbjct: 1568 YQACNEIRKYELENDYPKVPIVALSANALPHVVLSCKDSGFDSYLAKPITLQHLSLIISG 1627 Query: 241 LL 236 +L Sbjct: 1628 IL 1629
>YFHA_ECOLI (P0AFU4) Hypothetical protein yfhA (ORF-2)| Length = 444 Score = 66.6 bits (161), Expect = 5e-11 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 + LV+D+ +L RLT +G+ VV A GA G+ RE+ DL++ D+ + MDG + Sbjct: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 Query: 403 TRQL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 ++ K P + PVI LTAH D A G + TKP++ L I LE+ Sbjct: 68 FAEIQKVQPGM---PVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123
>YFHA_ECO57 (P0AFU5) Hypothetical protein yfhA| Length = 444 Score = 66.6 bits (161), Expect = 5e-11 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 1/119 (0%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 + LV+D+ +L RLT +G+ VV A GA G+ RE+ DL++ D+ + MDG + Sbjct: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67 Query: 403 TRQL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 ++ K P + PVI LTAH D A G + TKP++ L I LE+ Sbjct: 68 FAEIQKVQPGM---PVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123
>QSEB_HAEIN (P45337) Transcriptional regulatory protein qseB| Length = 221 Score = 65.9 bits (159), Expect = 9e-11 Identities = 38/119 (31%), Positives = 63/119 (52%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I L+ED+ + L LT+ GF V DG G+ D +++D++LP +DG E Sbjct: 2 RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 +Q +++ Q PV+ LTA +R K + +G DDY KP L + +++ L+ R Sbjct: 62 VLQQWRSNH--QDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRR 118
>KDPE_ECOLI (P21866) KDP operon transcriptional regulatory protein kdpE| Length = 225 Score = 65.9 bits (159), Expect = 9e-11 Identities = 44/128 (34%), Positives = 63/128 (49%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 MT + +VED + L L G V A G+ A +PDLI++D+ LP DG Sbjct: 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDG 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 E R L+ + PVI L+A + SD+ A+ AG DDY +KP + L +++ L Sbjct: 61 IEFIRDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 Query: 232 R*SHRREP 209 R S P Sbjct: 118 RHSATTAP 125
>RCSC_SALTI (Q56128) Sensor protein rcsC (EC 2.7.13.3) (Capsular synthesis| regulator component C) Length = 948 Score = 65.1 bits (157), Expect = 2e-10 Identities = 35/119 (29%), Positives = 71/119 (59%), Gaps = 1/119 (0%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 I +V+D+ N +L+ +L G++ A+DG ++ + D++L D+++P MDG+ Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886 Query: 403 TRQLKADPELQQT-PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 T++++ +L T PV+ +TA+A+A ++++ + +G D +KP+ L L +A ER Sbjct: 887 TQRIR---QLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDALKQTLAVYAER 942
>DLTR_STRA5 (P0A4I0) Transcriptional regulatory protein dltR| Length = 224 Score = 64.7 bits (156), Expect = 2e-10 Identities = 37/113 (32%), Positives = 60/113 (53%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 ++ +VED + + + L KG+ V LA DG G++ DL+L+D+ LP G Sbjct: 2 RLLVVEDEKSIAEAIQALLADKGYSVDLAFDGDDGLEYILTGLYDLVLLDIMLPKRSGLS 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248 ++++ +TP+I LTA + D+ + G DDY TKP E LL++I Sbjct: 62 VLKRVREAG--LETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARI 112
>DLTR_STRA3 (P0A4H9) Transcriptional regulatory protein dltR| Length = 224 Score = 64.7 bits (156), Expect = 2e-10 Identities = 37/113 (32%), Positives = 60/113 (53%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 ++ +VED + + + L KG+ V LA DG G++ DL+L+D+ LP G Sbjct: 2 RLLVVEDEKSIAEAIQALLADKGYSVDLAFDGDDGLEYILTGLYDLVLLDIMLPKRSGLS 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248 ++++ +TP+I LTA + D+ + G DDY TKP E LL++I Sbjct: 62 VLKRVREAG--LETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARI 112
>RPRY_BACFR (Q9AE24) Transcriptional regulatory protein rprY| Length = 236 Score = 64.7 bits (156), Expect = 2e-10 Identities = 38/119 (31%), Positives = 60/119 (50%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I L ED+E+ +L L KG+ L DG AG + + DL + D+ +P DG+ Sbjct: 9 RILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGFKAFLKNKYDLCVFDVMMPKKDGFT 68 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 ++++A + P+I LTA + D + G DDY TKP + L +I +L R Sbjct: 69 LAQEVRA--ANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAILRR 125
>SLN1_YEAST (P39928) Osmolarity two-component system protein SLN1 (EC 2.7.13.3)| Length = 1220 Score = 64.3 bits (155), Expect = 3e-10 Identities = 39/115 (33%), Positives = 69/115 (60%), Gaps = 6/115 (5%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVD-----TARREQPDLILMDMSLP 425 KI +VEDN N +++ R L +G E + LA DG D T++ E ++I MD+ +P Sbjct: 1089 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMP 1148 Query: 424 VMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 260 +DG +T+ ++ D +P++ALTA A S+ ++ + +G + + +KPI+ P+L Sbjct: 1149 KVDGLLSTKMIRRDLGYT-SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKL 1202
>RESD_BACSU (P35163) Transcriptional regulatory protein resD| Length = 240 Score = 64.3 bits (155), Expect = 3e-10 Identities = 39/120 (32%), Positives = 61/120 (50%) Frame = -3 Query: 589 TKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 410 TKI +V+D +L L R+ + + A +G + DLIL+D+ +P DG Sbjct: 7 TKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGI 66 Query: 409 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 E RQ++ E + TP+I LTA ++R + AG DDY KP ++ ++ LL R Sbjct: 67 EVCRQIR---EKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123
>SRRA_STAAW (Q7A0U4) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 64.3 bits (155), Expect = 3e-10 Identities = 38/119 (31%), Positives = 62/119 (52%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAU (Q9L524) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 64.3 bits (155), Expect = 3e-10 Identities = 38/119 (31%), Positives = 62/119 (52%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAS (Q6G972) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 64.3 bits (155), Expect = 3e-10 Identities = 38/119 (31%), Positives = 62/119 (52%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAR (Q6GGK6) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 64.3 bits (155), Expect = 3e-10 Identities = 38/119 (31%), Positives = 62/119 (52%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAN (Q7A5H6) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 64.3 bits (155), Expect = 3e-10 Identities = 38/119 (31%), Positives = 62/119 (52%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAM (Q7A2R6) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 64.3 bits (155), Expect = 3e-10 Identities = 38/119 (31%), Positives = 62/119 (52%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAC (Q5HFT0) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 64.3 bits (155), Expect = 3e-10 Identities = 38/119 (31%), Positives = 62/119 (52%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 64 VATKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>EVGS_ECO57 (P58402) Sensor protein evgS precursor (EC 2.7.13.3)| Length = 1197 Score = 64.3 bits (155), Expect = 3e-10 Identities = 37/115 (32%), Positives = 66/115 (57%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 I + +D+ N +L R+L G++V A DG + + DL++ D+++P +DG+E Sbjct: 961 ILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNVDGFEL 1020 Query: 403 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 TR+L+ + P+ LTA+A A++REK + G + KP+ L L + ++QL Sbjct: 1021 TRKLR--EQNSSLPIWGLTANAQANEREKGLNCGMNLCLFKPLTLDVLKTHLSQL 1073
>CYAB_STIAU (P40138) Adenylate cyclase 2 (EC 4.6.1.1) (ATP pyrophosphate-lyase| 2) (Adenylyl cyclase 2) (AC2) Length = 352 Score = 64.3 bits (155), Expect = 3e-10 Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 2/124 (1%) Frame = -3 Query: 595 GMTKICLVEDNEDNWDMLSRRLTRKG--FEVVLAHDGAAGVDTARREQPDLILMDMSLPV 422 G ++ +V+D+ D + L G +EV+ D ++ + QP ++L D+ +P Sbjct: 4 GHHRVMVVDDSPLACDFVKEGLEALGLGYEVMCFQDPYEALEQVGKVQPAIVLSDLDMPG 63 Query: 421 MDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 242 +DG E +LK P +Q PVI LTA+ ++R K + AG DDY K + L ++I Sbjct: 64 IDGLELCWRLKESPS-RQVPVIILTANDSEAERVKGLRAGADDYVNKSASMAELSARIES 122 Query: 241 LLER 230 ++ R Sbjct: 123 VMRR 126
>RCSC_SALTY (P58662) Sensor protein rcsC (EC 2.7.13.3) (Capsular synthesis| regulator component C) Length = 948 Score = 64.3 bits (155), Expect = 3e-10 Identities = 35/119 (29%), Positives = 71/119 (59%), Gaps = 1/119 (0%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 I +V+D+ N +L+ +L G++ A+DG ++ + D++L D+++P MDG+ Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRL 886 Query: 403 TRQLKADPELQQT-PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 T++++ +L T PV+ +TA+A+A ++++ + +G D +KP+ L L +A ER Sbjct: 887 TQRIR---QLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDVLKQTLAVYAER 942
>CTRA_CAUCR (Q45994) Cell cycle transcriptional regulator ctrA (Response| regulator sokA) Length = 231 Score = 63.9 bits (154), Expect = 3e-10 Identities = 36/119 (30%), Positives = 59/119 (49%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 ++ L+ED+ + L +GF V G GVD + DLIL+D++LP M G + Sbjct: 2 RVLLIEDDSATAQTIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLNLPDMSGID 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R L+ TP++ L+ + + K A G DDY TKP ++++I ++ R Sbjct: 62 VLRTLRV--AKINTPIMILSGSSEIDTKVKTFAGGADDYMTKPFHKDEMIARIHAVVRR 118
>CHVI_RHIME (P50350) Transcriptional regulatory protein chvI| Length = 240 Score = 63.5 bits (153), Expect = 4e-10 Identities = 39/125 (31%), Positives = 64/125 (51%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 M I LV+D+ + +S L +G++V DGA+ ++ P L + D+ +P MDG Sbjct: 1 MQTIALVDDDRNILTSVSIALEAEGYKVETYTDGASALEGLLARPPQLAIFDIKMPRMDG 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 E R+L+ +L PVI LT+ D + G DD+ TKP L+ ++ +L Sbjct: 61 MELLRRLRQKSDL---PVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILR 117 Query: 232 R*SHR 218 R ++R Sbjct: 118 RAANR 122
>YCBL_BACSU (P42244) Hypothetical sensory transduction protein ycbL| Length = 226 Score = 63.5 bits (153), Expect = 4e-10 Identities = 36/116 (31%), Positives = 61/116 (52%) Frame = -3 Query: 577 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 398 LVED+ +M+ LT++GF +V A DG G+ ++ DL+L+D+ LP ++G + Sbjct: 2 LVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDF-- 59 Query: 397 QLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 LK E PV+ ++A D+ + G DDY KP + L +++ + R Sbjct: 60 -LKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRR 114
>RCAC_FREDI (Q01473) Protein rcaC| Length = 651 Score = 63.5 bits (153), Expect = 4e-10 Identities = 41/128 (32%), Positives = 68/128 (53%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI LVED++ +L++ LT + V + DG G + DLI++D+ LP +DG Sbjct: 2 KILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGIS 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER* 227 ++ +A + P++ LTA + + + + AG DDY KP + L+++I LL R Sbjct: 62 LCKRFRA--QGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRG 119 Query: 226 SHRREPWL 203 S+ P L Sbjct: 120 SNNPFPLL 127 Score = 62.8 bits (151), Expect = 8e-10 Identities = 34/119 (28%), Positives = 66/119 (55%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 K+ +++D++D L L GF+V D + PD +++D+++P ++G+E Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 + L++DP Q+ PV+ L+ + + +A A G DDY KP++ L ++I + L+R Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRILRRLQR 645
>RCSC_ECOLI (P14376) Sensor kinase protein rcsC (EC 2.7.13.3) (Capsular synthesis| regulator component C) Length = 949 Score = 62.8 bits (151), Expect = 8e-10 Identities = 34/119 (28%), Positives = 70/119 (58%), Gaps = 1/119 (0%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 I +V+D+ N +L+ +L G++ A+DG ++ + D++L D+++P MDG+ Sbjct: 827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 886 Query: 403 TRQLKADPELQQT-PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 T++++ +L T PVI +TA+A+A ++++ + +G D +KP+ L + + ER Sbjct: 887 TQRIR---QLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAER 942
>PHOB_PSEAE (P23620) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 62.8 bits (151), Expect = 8e-10 Identities = 37/118 (31%), Positives = 58/118 (49%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 I +V+D +M++ L G+E + A + +PDLIL+D LP G E Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGIEL 65 Query: 403 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+LK D P+I LTA ++ + + G DDY TKP L++++ +L R Sbjct: 66 ARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123
>LUXQ_VIBVY (Q7MD16) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 857 Score = 62.4 bits (150), Expect = 1e-09 Identities = 38/105 (36%), Positives = 56/105 (53%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 K+ LVEDN N +L + V DG ++ + DLILMD LP M G E Sbjct: 735 KVLLVEDNHTNAFILKAFCQKYQMSVEWVQDGTQALEKLKEHAFDLILMDNQLPKMGGIE 794 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 272 ATR+++ +L TP+ A TA A S +++ ++AG + KPI+ Sbjct: 795 ATREIRETLKL-GTPIYACTADAQESTKQEFLSAGANRVIVKPIK 838
>LUXQ_VIBVU (Q8D5Z6) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 857 Score = 62.4 bits (150), Expect = 1e-09 Identities = 38/105 (36%), Positives = 56/105 (53%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 K+ LVEDN N +L + V DG ++ + DLILMD LP M G E Sbjct: 735 KVLLVEDNHTNAFILKAFCQKYQMSVEWVQDGTQALEKLKEHAFDLILMDNQLPKMGGIE 794 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 272 ATR+++ +L TP+ A TA A S +++ ++AG + KPI+ Sbjct: 795 ATREIRETLKL-GTPIYACTADAQESTKQEFLSAGANRVIVKPIK 838
>SPHR_SYNP7 (P39663) Alkaline phosphatase synthesis transcriptional regulatory| protein sphR Length = 257 Score = 61.6 bits (148), Expect = 2e-09 Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 9/129 (6%) Frame = -3 Query: 589 TKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARR---------EQPDLILMD 437 ++I +VED DM++ L ++GF V +A DG ++ R E PDL+++D Sbjct: 24 SRILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLD 83 Query: 436 MSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLL 257 + LP ++G + R L+ P++ L+A +DR + G DDY TKP L+ Sbjct: 84 LMLPAVNGLDFCRLLRRQGVT--VPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELV 141 Query: 256 SKIAQLLER 230 ++ LL R Sbjct: 142 ARCRALLRR 150
>SSK1_YEAST (Q07084) Osomolarity two-component system protein SSK1| Length = 712 Score = 61.6 bits (148), Expect = 2e-09 Identities = 44/140 (31%), Positives = 62/140 (44%), Gaps = 26/140 (18%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 + +VEDN N +L L + LA +G V+ + LI MD+ LPV+ G EA Sbjct: 506 VLIVEDNVINQAILGSFLRKHKISYKLAKNGQEAVNIWKEGGLHLIFMDLQLPVLSGIEA 565 Query: 403 TRQLK------------------------ADPELQQTPVI--ALTAHAMASDREKAIAAG 302 +Q++ Q PVI ALTA D+ KA+ +G Sbjct: 566 AKQIRDFEKQNGIGIQKSLNNSHSNLEKGTSKRFSQAPVIIVALTASNSQMDKRKALLSG 625 Query: 301 CDDYDTKPIELPRLLSKIAQ 242 C+DY TKP+ L L KI + Sbjct: 626 CNDYLTKPVNLHWLSKKITE 645
>ARCB_SHIFL (P0AEC4) Aerobic respiration control sensor protein arcB (EC| 2.7.13.3) Length = 778 Score = 61.2 bits (147), Expect = 2e-09 Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 1/113 (0%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 + LVED E N + L + G V +A G A ++ + + DL+L+D+ LP M G + Sbjct: 528 VLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDI 587 Query: 403 TRQL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248 +R+L K P P++ALTA+ + D+++ + AG DD +KP+ +P L + I Sbjct: 588 SRELTKRYPREDLPPLVALTANVL-KDKQEYLNAGMDDVLSKPLSVPALTAMI 639
>ARCB_ECOLI (P0AEC3) Aerobic respiration control sensor protein arcB (EC| 2.7.13.3) Length = 778 Score = 61.2 bits (147), Expect = 2e-09 Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 1/113 (0%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 + LVED E N + L + G V +A G A ++ + + DL+L+D+ LP M G + Sbjct: 528 VLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDI 587 Query: 403 TRQL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248 +R+L K P P++ALTA+ + D+++ + AG DD +KP+ +P L + I Sbjct: 588 SRELTKRYPREDLPPLVALTANVL-KDKQEYLNAGMDDVLSKPLSVPALTAMI 639
>ARCB_ECO57 (P58363) Aerobic respiration control sensor protein arcB (EC| 2.7.13.3) Length = 778 Score = 61.2 bits (147), Expect = 2e-09 Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 1/113 (0%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 + LVED E N + L + G V +A G A ++ + + DL+L+D+ LP M G + Sbjct: 528 VLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDI 587 Query: 403 TRQL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248 +R+L K P P++ALTA+ + D+++ + AG DD +KP+ +P L + I Sbjct: 588 SRELTKRYPREDLPPLVALTANVL-KDKQEYLNAGMDDVLSKPLSVPALTAMI 639
>TORR_ECOLI (P38684) TorCAD operon transcriptional regulatory protein torR| Length = 230 Score = 61.2 bits (147), Expect = 2e-09 Identities = 39/118 (33%), Positives = 60/118 (50%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 I +VED L T++G+ V + GA + + + DLIL+D++LP +G Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLML 64 Query: 403 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 TR L+ E +I +T + DR + G DDY TKP+EL L+ ++ LL R Sbjct: 65 TRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119
>PHOB_HAEIN (P45189) Phosphate regulon transcriptional regulatory protein phoB| Length = 231 Score = 61.2 bits (147), Expect = 2e-09 Identities = 39/119 (32%), Positives = 61/119 (51%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI +VED +M++ L++K ++V+ A D ++ + E P LIL+D LP G + Sbjct: 4 KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIK-ENPKLILLDWMLPGRSGIQ 62 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 + +K P+I LTA + D + AG DDY TKP LL++I + R Sbjct: 63 FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRR 121
>SP0A_CLODI (P52938) Stage 0 sporulation protein A homolog| Length = 274 Score = 61.2 bits (147), Expect = 2e-09 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 2/159 (1%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDG 413 KI L +DN+D +L L+ + +L A DG +D ++ QPDL+++D+ +P +DG Sbjct: 10 KIVLADDNKDFCQVLKEYLSNEDDIDILGIAKDGIEALDLVKKTQPDLLILDVIMPHLDG 69 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 +L + +I L+A + AI G D Y KP + +++I +L+ Sbjct: 70 LGVIEKLNTMDIPKMPKIIVLSAVGQDKITQSAINLGADYYIVKPFDFVVFINRIRELVS 129 Query: 232 R*SHRREPWLPP*PSTAMKLRRQFLLFGVGTTFTAIAAI 116 + EP P P ++ R + VG T I I Sbjct: 130 NRVTQVEP--KPRPVQETQMTRSDFVKNVGNIETEITNI 166
>SP0A_BACAN (P52928) Stage 0 sporulation protein A| Length = 264 Score = 60.8 bits (146), Expect = 3e-09 Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 2/118 (1%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKG-FEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 K+CLV+DN++ ML + + EV+ A++G ++ + +QPD++++D+ +P +DG Sbjct: 5 KVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDG 64 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 +++ L+Q VI LTA +KA+ G + KP ++ L S I Q+ Sbjct: 65 LAVLEKMRHIERLRQPSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQV 122
>TORR_ECO57 (P58357) TorCAD operon transcriptional regulatory protein torR| Length = 230 Score = 60.8 bits (146), Expect = 3e-09 Identities = 39/118 (33%), Positives = 60/118 (50%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 I +VED L T++G+ V + GA + + + DLIL+D++LP +G Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLML 64 Query: 403 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 TR L+ E +I +T + DR + G DDY TKP+EL L+ ++ LL R Sbjct: 65 TRALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119
>TCSA_EMENI (Q9P896) Two-component system protein A (EC 2.7.13.3)| Length = 719 Score = 60.8 bits (146), Expect = 3e-09 Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 7/116 (6%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRK-GFEVVLAHDGA-AGVDTAR--REQP---DLILMDMSLP 425 + LVEDN N T + GF+ + DGA G + R R++P D+ILMD+S+P Sbjct: 561 VLLVEDNIVNHTRYVEAPTYQFGFQRI---DGAWNGAEAVRMVRQKPLSYDIILMDVSMP 617 Query: 424 VMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLL 257 V+DG AT Q++ D L P+IA+T +AM D E IA G DD KP+ +LL Sbjct: 618 VLDGLAATEQIR-DMGLTM-PIIAITGNAMKGDAETYIAQGMDDCICKPVHRDQLL 671
>GTCR_ANEMI (Q44929) Response regulator gtcR| Length = 242 Score = 60.1 bits (144), Expect = 5e-09 Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 1/129 (0%) Frame = -3 Query: 592 MTKICLVEDNEDNW-DMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMD 416 M+K L+ D+E ++L L R+ + ++ A+DG + R+ DL ++D+ +P +D Sbjct: 1 MSKTILIADDEPEIIELLKLFLERESYRIIEAYDGEQAWNYIRQHPVDLAIIDIMMPALD 60 Query: 415 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236 G++ ++L + +L PVI L+A SD+ + G DD+ +KP +++I L Sbjct: 61 GFQLIKRLTNEYKL---PVIILSAKNRDSDKILGLGLGADDFISKPFNPLEAVARIQAQL 117 Query: 235 ER*SHRREP 209 R EP Sbjct: 118 RRAFEFNEP 126
>CHEY_BACSU (P24072) Chemotaxis protein cheY homolog| Length = 119 Score = 60.1 bits (144), Expect = 5e-09 Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGW 410 +I +V+D M+ L + GFEVV A +GA V+ + PDL+ MD+++P MDG Sbjct: 3 RILIVDDAAFMRMMIKDILVKNGFEVVAEAENGAQAVEKYKEHSPDLVTMDITMPEMDGI 62 Query: 409 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236 A +++K Q +I +A S AI AG D+ KP + R+L I + L Sbjct: 63 TALKEIKQID--AQARIIMCSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTL 118
>QSEB_SALTY (P66795) Transcriptional regulatory protein qseB| Length = 219 Score = 60.1 bits (144), Expect = 5e-09 Identities = 36/119 (30%), Positives = 63/119 (52%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I LVED+ D + L++ GF V +G G + D +++D++LP MDG + Sbjct: 2 RILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRD 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+ + + +Q PV+ LTA ++R + + G DDY KP L + +++ L+ R Sbjct: 62 ILREWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRR 118
>QSEB_SALTI (P66796) Transcriptional regulatory protein qseB| Length = 219 Score = 60.1 bits (144), Expect = 5e-09 Identities = 36/119 (30%), Positives = 63/119 (52%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I LVED+ D + L++ GF V +G G + D +++D++LP MDG + Sbjct: 2 RILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRD 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+ + + +Q PV+ LTA ++R + + G DDY KP L + +++ L+ R Sbjct: 62 ILREWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRR 118
>CPXR_HAEIN (P44895) Transcriptional regulatory protein cpxR homolog| Length = 227 Score = 59.7 bits (143), Expect = 6e-09 Identities = 36/121 (29%), Positives = 66/121 (54%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 M+K+ LV+D+ + ++LS L +GF+V A++G + E L+L+D+ +P ++G Sbjct: 1 MSKLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLN-ESYKLVLLDVMMPKLNG 59 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 E ++++ ++ PV+ LTA DR + G DD KP L+++I +L Sbjct: 60 IETLKEIR---KVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILR 116 Query: 232 R 230 R Sbjct: 117 R 117
>SP0A_BACTU (P0A4I4) Stage 0 sporulation protein A| Length = 264 Score = 59.7 bits (143), Expect = 6e-09 Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKG-FEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 K+CLV+DN++ ML + + EV+ A++G ++ +QPD++++D+ +P +DG Sbjct: 5 KVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDG 64 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 +++ L+Q VI LTA +KA+ G + KP ++ L S I Q+ Sbjct: 65 LAVLEKMRHIERLKQPSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQV 122
>SP0A_BACCR (P0A4I3) Stage 0 sporulation protein A| Length = 264 Score = 59.7 bits (143), Expect = 6e-09 Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKG-FEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 K+CLV+DN++ ML + + EV+ A++G ++ +QPD++++D+ +P +DG Sbjct: 5 KVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDG 64 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 +++ L+Q VI LTA +KA+ G + KP ++ L S I Q+ Sbjct: 65 LAVLEKMRHIERLKQPSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQV 122
>QSEB_ECOLI (P52076) Transcriptional regulatory protein qseB| Length = 219 Score = 58.9 bits (141), Expect = 1e-08 Identities = 35/119 (29%), Positives = 61/119 (51%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I L+ED+ D + L++ GF V G G + D +++D++LP MDG + Sbjct: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+ + Q+ PV+ LTA ++R + + G DDY KP L + +++ L+ R Sbjct: 62 ILREWREKG--QREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118
>QSEB_ECO57 (Q8XBS3) Transcriptional regulatory protein qseB| Length = 219 Score = 58.5 bits (140), Expect = 1e-08 Identities = 35/119 (29%), Positives = 61/119 (51%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I L+ED+ D + L++ GF V G G + D +++D++LP MDG + Sbjct: 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRD 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+ + + Q+ PV+ LTA +R + + G DDY KP L + +++ L+ R Sbjct: 62 ILREWR--EKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118
>YCF27_CYACA (Q9TLQ4) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 249 Score = 58.5 bits (140), Expect = 1e-08 Identities = 33/118 (27%), Positives = 60/118 (50%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 + +V+D + +L RLT G+ V A +G + DLI++D+ +P +DG+ Sbjct: 14 LLIVDDENNIRKILQTRLTLLGYSVSTACNGEEALKIFTTHSIDLIILDVMMPKLDGYGV 73 Query: 403 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 ++++ + ++ P+I LTA D+ + G DDY KP L ++I +L R Sbjct: 74 CQEIRKESDI---PIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELEARIQSILRR 128
>PHOP_SALTY (P14146) Virulence transcriptional regulatory protein phoP| Length = 224 Score = 57.8 bits (138), Expect = 2e-08 Identities = 34/121 (28%), Positives = 59/121 (48%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 M ++ +VEDN L +L G +V A D PD+ ++D+ LP DG Sbjct: 1 MMRVLVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPDEDG 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 R+ ++ PV+ LTA D+ + +++G DDY TKP + +++++ L+ Sbjct: 61 LSLIRRWRSSDV--SLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118 Query: 232 R 230 R Sbjct: 119 R 119
>PHOP_SALTI (Q8Z7H2) Virulence transcriptional regulatory protein phoP| Length = 224 Score = 57.8 bits (138), Expect = 2e-08 Identities = 34/121 (28%), Positives = 59/121 (48%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 M ++ +VEDN L +L G +V A D PD+ ++D+ LP DG Sbjct: 1 MMRVLVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPDEDG 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 R+ ++ PV+ LTA D+ + +++G DDY TKP + +++++ L+ Sbjct: 61 LSLIRRWRSSDV--SLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118 Query: 232 R 230 R Sbjct: 119 R 119
>PHOP_SALPA (Q5PMJ1) Virulence transcriptional regulatory protein phoP| Length = 224 Score = 57.8 bits (138), Expect = 2e-08 Identities = 34/121 (28%), Positives = 59/121 (48%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 M ++ +VEDN L +L G +V A D PD+ ++D+ LP DG Sbjct: 1 MMRVLVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPDEDG 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 R+ ++ PV+ LTA D+ + +++G DDY TKP + +++++ L+ Sbjct: 61 LSLIRRWRSSDV--SLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118 Query: 232 R 230 R Sbjct: 119 R 119
>SKN7_YEAST (P38889) Transcription factor SKN7 (Peroxide sensitivity protein| POS9) Length = 622 Score = 57.8 bits (138), Expect = 2e-08 Identities = 39/129 (30%), Positives = 66/129 (51%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 + LVED+ + + S+ L + G V + DG + + T + + DL+LMD+ +P +DG A Sbjct: 379 VLLVEDDAVSIQLCSKFLRKYGCTVQVVSDGLSAISTLEKYRYDLVLMDIVMPNLDGATA 438 Query: 403 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*S 224 T +++ +TP+IA+T + M D + G +D KP L S + + L+ Sbjct: 439 TSIVRSFD--NETPIIAMTGNIMNQDLITYLQHGMNDILAKPFTRDDLHSILIRYLKDRI 496 Query: 223 HRREPWLPP 197 E LPP Sbjct: 497 PLCEQQLPP 505
>CUTR_STRLI (P0A4I2) Transcriptional regulatory protein cutR (Defective melC1| suppressor protein) Length = 217 Score = 57.8 bits (138), Expect = 2e-08 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 ++ +VED + D ++ L R+ V + +DGAA ++ D++++D LP++ G + Sbjct: 2 RVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGDD 61 Query: 406 ATRQLKADPEL-QQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R++ EL T V+ LTA SDR + + G DDY KP L++++ L R Sbjct: 62 VCRKI---VELGMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRR 118
>CUTR_STRCO (P0A4I1) Transcriptional regulatory protein cutR (Defective melC1| suppressor protein) Length = 217 Score = 57.8 bits (138), Expect = 2e-08 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 1/120 (0%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 ++ +VED + D ++ L R+ V + +DGAA ++ D++++D LP++ G + Sbjct: 2 RVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGDD 61 Query: 406 ATRQLKADPEL-QQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R++ EL T V+ LTA SDR + + G DDY KP L++++ L R Sbjct: 62 VCRKI---VELGMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRR 118
>VANR_ENTFA (Q47744) Regulatory protein vanRB| Length = 220 Score = 57.4 bits (137), Expect = 3e-08 Identities = 36/119 (30%), Positives = 61/119 (51%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I LVED++ + + L +EV DG L+++D+ LP M+G E Sbjct: 4 RILLVEDDDHICNTVRAFLAEARYEVDACTDGNEAHTKFYENTYQLVILDIMLPGMNGHE 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+ +A + TP++ +TA + ++ +A A DDY TKP ++ LL ++ LL R Sbjct: 64 LLREFRAQND---TPILMMTALSDDENQIRAFDAEADDYVTKPFKMRILLKRVEALLRR 119
>ZRAR_SALTY (P25852) Transcriptional regulatory protein zraR| Length = 441 Score = 57.4 bits (137), Expect = 3e-08 Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 1/129 (0%) Frame = -3 Query: 595 GMTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMD 416 G I +V+D+ + +L L G+ V LA+ G + R + DL+L D+ + MD Sbjct: 4 GKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMD 63 Query: 415 GWEATRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 G +++KA +P + P++ +TA + +A+ AG DY KP++ RL + + Sbjct: 64 GIATLKEIKALNPAI---PILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKA 120 Query: 238 LER*SHRRE 212 L +H RE Sbjct: 121 L---AHTRE 126
>ZRAR_SALTI (Q8Z333) Transcriptional regulatory protein zraR| Length = 441 Score = 57.4 bits (137), Expect = 3e-08 Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 1/129 (0%) Frame = -3 Query: 595 GMTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMD 416 G I +V+D+ + +L L G+ V LA+ G + R + DL+L D+ + MD Sbjct: 4 GKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMD 63 Query: 415 GWEATRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 G +++KA +P + P++ +TA + +A+ AG DY KP++ RL + + Sbjct: 64 GIATLKEIKALNPAI---PILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKA 120 Query: 238 LER*SHRRE 212 L +H RE Sbjct: 121 L---AHTRE 126
>ZRAR_KLEOX (Q9APD9) Transcriptional regulatory protein zraR| Length = 443 Score = 57.4 bits (137), Expect = 3e-08 Identities = 33/117 (28%), Positives = 65/117 (55%), Gaps = 1/117 (0%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 I +V+D+ + +L L G+ V LA++G ++ R + DL+L D+ + MDG E Sbjct: 8 ILVVDDDISHCTILQALLRGWGYRVALANNGLQALEKVREKVFDLVLCDIRMAEMDGIET 67 Query: 403 TRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236 +++K +P + PV+ +TA++ +A+ +G DY KP++ +L +++ L Sbjct: 68 LKEIKTFNPSI---PVLIMTAYSSVDTAVEALKSGALDYLIKPLDFDKLQLTLSEAL 121
>BCER_BACHD (Q9K621) Sensory transduction protein bceR| Length = 231 Score = 57.0 bits (136), Expect = 4e-08 Identities = 32/121 (26%), Positives = 62/121 (51%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 M KI L+ED+ + + RL++ ++V + ++ +PDL+++D+ LP DG Sbjct: 1 MFKIMLIEDDHTLFSEIKERLSQWSYDVFGVSNFEKVIEEFTSLKPDLVIIDIQLPKFDG 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 + R ++ + P+I L++ +D ++ G DD+ KP L++KI +L Sbjct: 61 FHWCRMIR---QHSNVPIIFLSSRDHPTDMVMSMQLGADDFIQKPFHFDVLVAKIQAILR 117 Query: 232 R 230 R Sbjct: 118 R 118
>PETR_RHOCA (P31079) Protein petR| Length = 245 Score = 57.0 bits (136), Expect = 4e-08 Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 4/122 (3%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAG--VDTARREQPDLILMDMSLPVMDGW 410 + +V+D+E +L + L R GF V D A + T + +LI++D+ +P DG Sbjct: 9 LLIVDDDERIRGLLQKFLIRNGFLVTAGRDAAHARRLFTLSGLEFNLIVLDVMMPGEDGL 68 Query: 409 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDY--DTKPIELPRLLSKIAQLL 236 TR L+ TP++ LTA +R + + AG DDY KP E LL +I +L Sbjct: 69 SLTRDLRTK---MATPILLLTARGETRERIEGLEAGADDYLFTPKPFEPKELLLRINAIL 125 Query: 235 ER 230 R Sbjct: 126 RR 127
>YCF29_CYAPA (P48359) Probable transcriptional regulator ycf29| Length = 210 Score = 56.2 bits (134), Expect = 7e-08 Identities = 36/121 (29%), Positives = 57/121 (47%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 M I +++ + + L LT GF V + D +R++ DLI+ D+ +P M G Sbjct: 1 MINILILDTDIGIRNSLKLYLTEIGFHVEESTCVDQAWDILKRKKIDLIICDIIMPGMGG 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 + QL+ + + PVI LT + DR GCD Y +KP + L+ I +L Sbjct: 61 FNFLHQLRLNTDYCTLPVILLTTRGLTQDRIIGYKTGCDSYISKPFNIEELVVIIEGVLN 120 Query: 232 R 230 R Sbjct: 121 R 121
>CIAR_STRR6 (P0A4H8) Transcriptional regulatory protein ciaR| Length = 224 Score = 56.2 bits (134), Expect = 7e-08 Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Frame = -3 Query: 592 MTKICLVEDN----EDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLP 425 M KI LVED+ +D L +V+ DG G+ A DLIL+D+ LP Sbjct: 1 MIKILLVEDDLGLSNSVFDFLDDFA-----DVMQVFDGEEGLYEAESGVYDLILLDLMLP 55 Query: 424 VMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIA 245 +G++ ++L+ TPV+ +TA D+ G DDY TKP L L +I Sbjct: 56 EKNGFQVLKELREKGIT--TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQ 113 Query: 244 QLLER 230 LL+R Sbjct: 114 ALLKR 118
>CIAR_STRPN (P0A4H7) Transcriptional regulatory protein ciaR| Length = 224 Score = 56.2 bits (134), Expect = 7e-08 Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Frame = -3 Query: 592 MTKICLVEDN----EDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLP 425 M KI LVED+ +D L +V+ DG G+ A DLIL+D+ LP Sbjct: 1 MIKILLVEDDLGLSNSVFDFLDDFA-----DVMQVFDGEEGLYEAESGVYDLILLDLMLP 55 Query: 424 VMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIA 245 +G++ ++L+ TPV+ +TA D+ G DDY TKP L L +I Sbjct: 56 EKNGFQVLKELREKGIT--TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQ 113 Query: 244 QLLER 230 LL+R Sbjct: 114 ALLKR 118
>OMPR_SHIFL (P0AA21) Transcriptional regulatory protein ompR| Length = 239 Score = 56.2 bits (134), Expect = 7e-08 Identities = 38/119 (31%), Positives = 59/119 (49%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI +V+D+ +L R LT +GF+V + RE L+++D+ LP DG Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>OMPR_SALTY (P0AA19) Transcriptional regulatory protein ompR| Length = 239 Score = 56.2 bits (134), Expect = 7e-08 Identities = 38/119 (31%), Positives = 59/119 (49%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI +V+D+ +L R LT +GF+V + RE L+++D+ LP DG Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>OMPR_SALTI (P0AA20) Transcriptional regulatory protein ompR| Length = 239 Score = 56.2 bits (134), Expect = 7e-08 Identities = 38/119 (31%), Positives = 59/119 (49%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI +V+D+ +L R LT +GF+V + RE L+++D+ LP DG Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>OMPR_ECOLI (P0AA16) Transcriptional regulatory protein ompR| Length = 239 Score = 56.2 bits (134), Expect = 7e-08 Identities = 38/119 (31%), Positives = 59/119 (49%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI +V+D+ +L R LT +GF+V + RE L+++D+ LP DG Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>OMPR_ECOL6 (P0AA17) Transcriptional regulatory protein ompR| Length = 239 Score = 56.2 bits (134), Expect = 7e-08 Identities = 38/119 (31%), Positives = 59/119 (49%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI +V+D+ +L R LT +GF+V + RE L+++D+ LP DG Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>OMPR_ECO57 (P0AA18) Transcriptional regulatory protein ompR| Length = 239 Score = 56.2 bits (134), Expect = 7e-08 Identities = 38/119 (31%), Positives = 59/119 (49%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI +V+D+ +L R LT +GF+V + RE L+++D+ LP DG Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 66 ICRRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>PHOP_SHIFL (Q83RR0) Virulence transcriptional regulatory protein phoP| Length = 223 Score = 55.8 bits (133), Expect = 9e-08 Identities = 32/119 (26%), Positives = 59/119 (49%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 ++ +VEDN L ++ G +V A D PD+ ++D+ LP DG Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLS 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+ +++ P++ LTA D+ + ++AG DDY TKP + +++++ L+ R Sbjct: 62 LIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118
>PHOP_ECOL6 (Q8CXZ9) Transcriptional regulatory protein phoP| Length = 223 Score = 55.8 bits (133), Expect = 9e-08 Identities = 32/119 (26%), Positives = 59/119 (49%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 ++ +VEDN L ++ G +V A D PD+ ++D+ LP DG Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLS 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+ +++ P++ LTA D+ + ++AG DDY TKP + +++++ L+ R Sbjct: 62 LIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118
>SP0A_BACSU (P06534) Stage 0 sporulation protein A| Length = 267 Score = 55.8 bits (133), Expect = 9e-08 Identities = 31/118 (26%), Positives = 63/118 (53%), Gaps = 2/118 (1%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLT-RKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 K+C+ +DN + +LS + ++ EV+ +A++G + + + PD++++D+ +P +DG Sbjct: 5 KVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDG 64 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 +L+ +Q VI LTA +KA+ G + KP ++ L+ I Q+ Sbjct: 65 LAVLERLRESDLKKQPNVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQV 122
>PILG_PSEAE (P46384) Protein pilG| Length = 135 Score = 55.8 bits (133), Expect = 9e-08 Identities = 31/113 (27%), Positives = 55/113 (48%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 K+ +++D++ L + G +V+ A DG + P++I +D+ +P +DG++ Sbjct: 9 KVMVIDDSKTIRRTAETLLKKVGCDVITAIDGFDALAKIADTHPNIIFVDIMMPRLDGYQ 68 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248 +K + + TPVI L++ D+ K G D Y TKP LL I Sbjct: 69 TCALIKNNSAFKSTPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAI 121
>PHOP_SALCH (Q57QC3) Virulence transcriptional regulatory protein phoP| Length = 224 Score = 55.8 bits (133), Expect = 9e-08 Identities = 33/121 (27%), Positives = 58/121 (47%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 M ++ +VEDN L +L G +V D PD+ ++D+ LP DG Sbjct: 1 MMRVLVVEDNALLRHHLKVQLQDSGHQVDATEDAREADYYLNEHLPDIAIVDLGLPDEDG 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 R+ ++ PV+ LTA D+ + +++G DDY TKP + +++++ L+ Sbjct: 61 LSLIRRWRSSDI--SLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118 Query: 232 R 230 R Sbjct: 119 R 119
>CHEB_HALMA (Q5V0B3) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 369 Score = 55.8 bits (133), Expect = 9e-08 Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 8/122 (6%) Frame = -3 Query: 577 LVEDNEDNWDMLSRRLTRKGFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 401 + +D+ ++S L+ G +VV A DG V +PD++ MD+ +PVM+G EAT Sbjct: 9 VADDSHFMRSVISDILSDGGIDVVAQARDGEEAVSAVIEHRPDVVTMDVEMPVMNGIEAT 68 Query: 400 RQLKADPELQQTPVIALTAHA--MASDREKAIAAGCDDYDTKP-----IELPRLLSKIAQ 242 ++ A+ TPV+ L+AH A +A+ G D+ TKP +E+ RL ++ + Sbjct: 69 ERIMAE---SPTPVLMLSAHTDENADVTFEALDKGAVDFFTKPGGEVSMEMSRLKDQLVE 125 Query: 241 LL 236 ++ Sbjct: 126 MV 127
>BAER_ECOLI (P69228) Transcriptional regulatory protein baeR| Length = 240 Score = 55.8 bits (133), Expect = 9e-08 Identities = 35/125 (28%), Positives = 57/125 (45%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +VED +L L + L G + R+ PDLIL+D+ LP DG Sbjct: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER* 227 R+++ P++ +TA DR + G DDY KP +++++ +L R Sbjct: 72 LCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 Query: 226 SHRRE 212 +RE Sbjct: 129 KPQRE 133
>BAER_ECOL6 (P69229) Transcriptional regulatory protein baeR| Length = 240 Score = 55.8 bits (133), Expect = 9e-08 Identities = 35/125 (28%), Positives = 57/125 (45%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +VED +L L + L G + R+ PDLIL+D+ LP DG Sbjct: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER* 227 R+++ P++ +TA DR + G DDY KP +++++ +L R Sbjct: 72 LCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 Query: 226 SHRRE 212 +RE Sbjct: 129 KPQRE 133
>PHOP_ECOLI (P23836) Transcriptional regulatory protein phoP| Length = 223 Score = 55.5 bits (132), Expect = 1e-07 Identities = 32/119 (26%), Positives = 59/119 (49%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 ++ +VEDN L ++ G +V A D PD+ ++D+ LP DG Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLS 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+ +++ P++ LTA D+ + ++AG DDY TKP + +++++ L+ R Sbjct: 62 LIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118
>CHEB_ARCFU (O29221) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 349 Score = 55.5 bits (132), Expect = 1e-07 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 3/104 (2%) Frame = -3 Query: 532 LTRKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVI 356 LT+ G EVV A +G V+ A + +PD+I +D+++P MDG A LK E Q TPV+ Sbjct: 20 LTKAGIEVVDTAKNGREAVEKALKLKPDVITLDINMPEMDGLTA---LKLIMEKQPTPVV 76 Query: 355 ALTAHAMASDRE--KAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 L++ RE +A+ G D+ TKP LS +AQ L R Sbjct: 77 MLSSLTKEGARETLEALKIGAVDFVTKPDGALVDLSSVAQELVR 120
>BCER_BACSU (O34951) Sensory transduction protein bceR| Length = 231 Score = 55.5 bits (132), Expect = 1e-07 Identities = 32/124 (25%), Positives = 60/124 (48%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 M K+ L+ED+E + + RLT ++V D + + PD +++D+ LP DG Sbjct: 1 MFKLLLIEDDESLFHEIKDRLTGWSYDVYGIQDFSQVLQEFAAVNPDCVIIDVQLPKFDG 60 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 + R +++ P++ L++ +D ++ G DD+ KP L++KI + Sbjct: 61 FHWCRLIRS---RSNVPILFLSSRDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAMFR 117 Query: 232 R*SH 221 R H Sbjct: 118 RVHH 121
>SP0A_BACME (P52932) Stage 0 sporulation protein A (Fragment)| Length = 212 Score = 55.1 bits (131), Expect = 2e-07 Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLT-RKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 K+CLV+DN + +L ++ ++ EV+ +A++G + + + PD++++D+ +P +DG Sbjct: 5 KVCLVDDNRELIGLLEDYISEQEDMEVIGVAYNGQECLSILKDKNPDVLVLDIIMPHLDG 64 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 QLK + VI LTA +KA+ G + KP ++ L++ I Q+ Sbjct: 65 LAVLGQLKEMKKENYPNVIMLTAFGQEDVTKKAVDLGAAYFILKPFDMENLVNHIRQV 122
>ZRAR_ECOLI (P14375) Transcriptional regulatory protein zraR| Length = 441 Score = 55.1 bits (131), Expect = 2e-07 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 1/117 (0%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 I +V+D+ + +L L G+ V LA+ G ++ R + DL+L D+ + MDG Sbjct: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 Query: 403 TRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236 +++KA +P + PV+ +TA++ +A+ G DY KP++ L + + + L Sbjct: 68 LKEIKALNPAI---PVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121
>CHVI_RHISN (P50351) Transcriptional regulatory protein chvI| Length = 238 Score = 54.7 bits (130), Expect = 2e-07 Identities = 39/126 (30%), Positives = 62/126 (49%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 M I LV+D+ + +S L +G++V D +A ++ P L + D+ +P MDG Sbjct: 1 MQTIALVDDDRNILTSVSIALEAEGYKVETYTDRSA-LEGLLARPPHLAIFDIKMPRMDG 59 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 E R+L+ +L PVI LT+ D + G DD+ TKP L+ ++ +L Sbjct: 60 MELLRRLRQKSDL---PVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILR 116 Query: 232 R*SHRR 215 R S R Sbjct: 117 RASGPR 122
>SP0F_BACSU (P06628) Sporulation initiation phosphotransferase F (EC 2.7.-.-)| (Stage 0 sporulation protein F) Length = 124 Score = 54.7 bits (130), Expect = 2e-07 Identities = 31/117 (26%), Positives = 60/117 (51%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI +V+D +L+ ++G++ A +G +D +E+PDL+L+DM +P MDG E Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIE 64 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236 +++K E VI +TA+ +++ G + KP ++ + + + L Sbjct: 65 ILKRMKVIDE--NIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119
>NISR_LACLA (Q07597) Nisin biosynthesis regulatory protein nisR| Length = 229 Score = 54.3 bits (129), Expect = 3e-07 Identities = 31/119 (26%), Positives = 64/119 (53%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI +V+D+++ ++ L + +EV + + +D + DLIL+D+ + ++G E Sbjct: 4 KILIVDDDQEILKLMKTALEMRNYEVATHQNISLPLDITDFQGFDLILLDIMMSNIEGTE 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 ++++ + TP+I ++A D + G DDY TKP L +L++K+ ++R Sbjct: 64 ICKRIRREIS---TPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKR 119
>ZRAR_ECO57 (Q8X613) Transcriptional regulatory protein zraR| Length = 441 Score = 54.3 bits (129), Expect = 3e-07 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 I +V+D+ + +L L G+ V LA+ G ++ R DL+L D+ + MDG Sbjct: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRERVFDLVLCDVRMAEMDGIAT 67 Query: 403 TRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236 +++KA +P + PV+ +TA++ +A+ G DY KP++ L + + + L Sbjct: 68 LKEIKALNPAI---PVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121
>LUXQ_VIBPA (Q87GU5) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 858 Score = 54.3 bits (129), Expect = 3e-07 Identities = 35/105 (33%), Positives = 54/105 (51%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 K+ LVEDN N +L T+ +V A DG ++ + DLILMD LP + G E Sbjct: 735 KVLLVEDNHTNAFILKAFCTKYKMQVDWAKDGLEAMEFLKDHSYDLILMDNQLPHLGGIE 794 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 272 T++++ + +L TP+ A TA + + AG + KPI+ Sbjct: 795 TTKEIRQNLKL-GTPIYACTADTAQETSDAFMEAGANYVLLKPIK 838
>DCTR_BACME (P39486) Probable C4-dicarboxylate response regulator dctR| Length = 228 Score = 53.9 bits (128), Expect = 4e-07 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 1/95 (1%) Frame = -3 Query: 523 KGFEVVLA-HDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALT 347 +GF V+ A +G GV ++ QPDL ++DM +P DG +Q++A+ +T VIA+T Sbjct: 29 EGFTVIAAASNGLEGVQLIKQHQPDLTIIDMYMPSQDGLTTLQQIRANG--YKTDVIAVT 86 Query: 346 AHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 242 A + K + G DY KP + R+ + Q Sbjct: 87 AASDIETVRKVLQYGAVDYIMKPFKFERMKQALEQ 121
>TCSB_EMENI (Q9P4U6) Two-component system protein B precursor (EC 2.7.13.3) (NHK1| protein) (SLN1 homolog) Length = 1070 Score = 53.9 bits (128), Expect = 4e-07 Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 6/120 (5%) Frame = -3 Query: 601 GLGMTKICLVEDNEDNWDMLSRRLTRKG-FEVVLAHDGAAGVDTARREQP-----DLILM 440 GL + + EDN N +++ R L + ++V + DG DT + DLI M Sbjct: 929 GLKKIRALVAEDNVVNQEVVLRMLALEDVYDVTVVKDGQEAYDTVKANMEEGKVFDLIFM 988 Query: 439 DMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 260 D+ +P +DG E+TR ++ P++AL+A + S+ + + +G D + +KPI P L Sbjct: 989 DIQMPNLDGIESTRLIRQMG--CSAPIVALSAFSEDSNIKDCMNSGMDMFISKPIRRPAL 1046
>LUXO_VIBVY (Q7MM78) Regulatory protein luxO| Length = 453 Score = 53.5 bits (127), Expect = 5e-07 Identities = 32/106 (30%), Positives = 49/106 (46%) Frame = -3 Query: 577 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 398 +VED + L G ++ + G +D+ + PDLIL+D+ LP M G + Sbjct: 1 MVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLH 60 Query: 397 QLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 260 +KA P+I +TAH +A+ G D+ KP E RL Sbjct: 61 AVKASH--PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRL 104
>LUXO_VIBVU (Q8CWJ5) Regulatory protein luxO| Length = 453 Score = 53.5 bits (127), Expect = 5e-07 Identities = 32/106 (30%), Positives = 49/106 (46%) Frame = -3 Query: 577 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 398 +VED + L G ++ + G +D+ + PDLIL+D+ LP M G + Sbjct: 1 MVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLH 60 Query: 397 QLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 260 +KA P+I +TAH +A+ G D+ KP E RL Sbjct: 61 AVKASH--PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRL 104
>FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7.13.3)| Length = 777 Score = 53.5 bits (127), Expect = 5e-07 Identities = 28/80 (35%), Positives = 42/80 (52%) Frame = -3 Query: 520 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAH 341 G V A DG + DLIL D+ +P +DG+ R+LK+ P + + PVI L++ Sbjct: 682 GHSVEEAQDGEEAYVKVQNNTYDLILTDVQMPKLDGFSLARRLKSTPAVARIPVIILSSL 741 Query: 340 AMASDREKAIAAGCDDYDTK 281 A D+ + + AG D Y K Sbjct: 742 ASPEDKRRGLDAGADAYLVK 761
>REGX3_MYCLE (P54884) Sensory transduction protein regX3| Length = 198 Score = 53.5 bits (127), Expect = 5e-07 Identities = 30/89 (33%), Positives = 46/89 (51%) Frame = -3 Query: 496 DGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREK 317 DG A + R D++L+D+ LP M G + +QL+ + PVI +TA D+ Sbjct: 4 DGPAALAEFDRSGADIVLLDLMLPGMSGTDVYKQLRVRSSV---PVIMVTARDSEIDKVV 60 Query: 316 AIAAGCDDYDTKPIELPRLLSKIAQLLER 230 + G DDY TKP L+++I +L R Sbjct: 61 GLELGADDYVTKPYSARELIARIRAVLRR 89
>NTRC_KLEPN (P03029) Nitrogen assimilation regulatory protein| Length = 469 Score = 53.1 bits (126), Expect = 6e-07 Identities = 32/121 (26%), Positives = 56/121 (46%) Frame = -3 Query: 571 EDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL 392 +D+ W +L R LT G G +D + PD++L D+ +P MDG +Q+ Sbjct: 11 DDSSIRW-VLERALTGAGLSCTTFESGNEVLDALTTKTPDVLLSDIRMPGMDGLALLKQI 69 Query: 391 KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 212 K + PVI +TAH+ A G DY KP ++ ++ + + + +++ Sbjct: 70 KQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVDRAISHYQEQQQ 127 Query: 211 P 209 P Sbjct: 128 P 128
>CHEB_NATPD (Q3IRR4) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 355 Score = 53.1 bits (126), Expect = 6e-07 Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 3/103 (2%) Frame = -3 Query: 577 LVEDNEDNWDMLSRRLTRKGFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 401 +V+D++ ++S L G VV A +G +GV+ R +PD++ MD+ +P MDG EAT Sbjct: 10 VVDDSQFMRTVISDMLDDAGITVVATASNGESGVEAVRTHEPDVVTMDLKMPGMDGIEAT 69 Query: 400 RQLKADPELQQTPVIALTAHA--MASDREKAIAAGCDDYDTKP 278 ++ + TPV+ L+AHA A +A+ G D+ KP Sbjct: 70 GRIMDE---CPTPVLVLSAHADDGAELTFEAMDEGAVDFFKKP 109
>PHOP_ECO57 (Q8X738) Transcriptional regulatory protein phoP| Length = 223 Score = 52.8 bits (125), Expect = 8e-07 Identities = 31/119 (26%), Positives = 58/119 (48%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 ++ +VEDN L ++ G +V A D PD+ ++D+ LP DG Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLS 61 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 + +++ P++ LTA D+ + ++AG DDY TKP + +++++ L+ R Sbjct: 62 LICRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118
>SP0A_BACST (P52934) Stage 0 sporulation protein A| Length = 259 Score = 52.8 bits (125), Expect = 8e-07 Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRK-GFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 K+C+ +DN + +L ++ + EV+ A++G + ++PD++L+D+ +P +DG Sbjct: 4 KVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDG 63 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 +++A E Q VI LTA +KA+ G + KP ++ L I Q+ Sbjct: 64 LAVLERIRAGFE-HQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQV 120
>BVGS_BORPE (P16575) Virulence sensor protein bvgS precursor (EC 2.7.13.3)| Length = 1238 Score = 52.4 bits (124), Expect = 1e-06 Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 5/124 (4%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 ++ +V+D++ N +L ++L G V+ A G A + R D+++ D ++P + G+E Sbjct: 974 RVLVVDDHKPNLMLLRQQLDYLGQRVIAADSGEAALALWREHAFDVVITDCNMPGISGYE 1033 Query: 406 ATRQLKAD---PELQQTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 242 R+++A P +T I TA A + ++ AAG DD KPI + L ++ + Sbjct: 1034 LARRIRAAEAAPGYGRTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNE 1093 Query: 241 LLER 230 + R Sbjct: 1094 AVAR 1097
>CHEY_PSEAE (Q51455) Chemotaxis protein cheY| Length = 124 Score = 52.4 bits (124), Expect = 1e-06 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGF-EVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 410 KI +V+D ++ L GF A DG + D ++ D ++P M G Sbjct: 2 KILIVDDFSTMRRIIKNLLRDLGFTNTAEADDGTTALPMLHSGNFDFLVTDWNMPGMTGI 61 Query: 409 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 + R ++AD L+ PV+ +TA A +A AG + Y KP L KI ++ ER Sbjct: 62 DLLRAVRADERLKHLPVLMVTAEAKRDQIIEAAQAGVNGYVVKPFTAQVLKEKIEKIFER 121
>NTRC_ECOLI (P0AFB8) Nitrogen regulation protein NR(I)| Length = 469 Score = 52.4 bits (124), Expect = 1e-06 Identities = 31/121 (25%), Positives = 57/121 (47%) Frame = -3 Query: 571 EDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL 392 +D+ W +L R L G +GA ++ + PD++L D+ +P MDG +Q+ Sbjct: 11 DDSSIRW-VLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQI 69 Query: 391 KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 212 K + PVI +TAH+ A G DY KP ++ ++ + + + +++ Sbjct: 70 KQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 Query: 211 P 209 P Sbjct: 128 P 128
>NTRC_ECO57 (P0AFB9) Nitrogen regulation protein NR(I)| Length = 469 Score = 52.4 bits (124), Expect = 1e-06 Identities = 31/121 (25%), Positives = 57/121 (47%) Frame = -3 Query: 571 EDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL 392 +D+ W +L R L G +GA ++ + PD++L D+ +P MDG +Q+ Sbjct: 11 DDSSIRW-VLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQI 69 Query: 391 KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 212 K + PVI +TAH+ A G DY KP ++ ++ + + + +++ Sbjct: 70 KQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 Query: 211 P 209 P Sbjct: 128 P 128
>LUXO_VIBPA (Q87MX7) Regulatory protein luxO| Length = 453 Score = 52.0 bits (123), Expect = 1e-06 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Frame = -3 Query: 577 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 398 +VED + LT G ++ + G +++ PDLIL+D+ LP M G + Sbjct: 1 MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLH 60 Query: 397 QL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 260 + K+ P++ P+I +TAH +A+ G D+ KP E RL Sbjct: 61 AVKKSHPDV---PIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRL 104
>LUXO_VIBHA (P54299) Luminescence regulatory protein luxO| Length = 453 Score = 52.0 bits (123), Expect = 1e-06 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Frame = -3 Query: 577 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 398 +VED + LT G ++ + G +++ PDLIL+D+ LP M G + Sbjct: 1 MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLH 60 Query: 397 QL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 260 + K+ P++ P+I +TAH +A+ G D+ KP E RL Sbjct: 61 AVKKSHPDV---PIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRL 104
>LUXQ_VIBCH (Q9KLK7) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 857 Score = 52.0 bits (123), Expect = 1e-06 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 2/107 (1%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 ++ LVEDN N + + G +V DG ++ + DL+LMD LP +DG E Sbjct: 731 RVLLVEDNHTNAFIAQAFCRKYGLDVSWVTDGLQAIEELKIHDYDLVLMDNQLPYLDGVE 790 Query: 406 ATRQLKADPELQQTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIE 272 TR +K ++ PV+ A TA + R+ AG + KP++ Sbjct: 791 TTRTIK---KVLHLPVVVYACTADGLEETRQAFFHAGAEYVLVKPLK 834
>CSSR_BACSU (O32192) Transcriptional regulatory protein cssR| Length = 225 Score = 52.0 bits (123), Expect = 1e-06 Identities = 36/121 (29%), Positives = 67/121 (55%), Gaps = 4/121 (3%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQ---PDLILMDMSLPVMDG 413 I LVED ++ ++L++ L +G+ + G + AR++ P L ++D+ LP DG Sbjct: 5 IYLVEDEDNLNELLTKYLENEGWNITSFTKG----EDARKKMTPSPHLWILDIMLPDTDG 60 Query: 412 WEATRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236 + +++KA DP++ PVI ++A DR + G +DY +KP L+ ++ +LL Sbjct: 61 YTLIKEIKAKDPDV---PVIFISARDADIDRVLGLELGSNDYISKPFLPRELIIRVQKLL 117 Query: 235 E 233 + Sbjct: 118 Q 118
>LUXO1_VIBCH (Q9KT84) Regulatory protein luxO| Length = 455 Score = 51.6 bits (122), Expect = 2e-06 Identities = 30/106 (28%), Positives = 50/106 (47%) Frame = -3 Query: 577 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 398 +VED + LT ++ + G +++ R +PDLIL+D+ LP M G + Sbjct: 1 MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60 Query: 397 QLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 260 +K + P++ +TAH +A+ G D+ KP E RL Sbjct: 61 AVK--EKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRL 104
>NTRC_PROVU (P28787) Nitrogen regulation protein NR(I)| Length = 473 Score = 51.6 bits (122), Expect = 2e-06 Identities = 33/121 (27%), Positives = 56/121 (46%) Frame = -3 Query: 571 EDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL 392 +D+ W +L R +TR+G + EQPD++L D+ +P MDG + + Sbjct: 11 DDSSIRW-VLERAITREGMLCRAFEHANDVLKALNSEQPDVLLSDIRMPDMDGLSLLKII 69 Query: 391 KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 212 K + PVI +TAH+ A G DY KP ++ L+ I + + +++ Sbjct: 70 KE--QYPTLPVIIMTAHSDLDAAVNAYQQGAFDYLPKPFDIDETLALIERAITHYREQKQ 127 Query: 211 P 209 P Sbjct: 128 P 128
>CHEB_HALSA (Q9HQW6) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 347 Score = 51.6 bits (122), Expect = 2e-06 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 17/168 (10%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMD 416 MT+ +V+D+ ++S L G +VV A +GA +D QPD+I MD+ +P MD Sbjct: 1 MTEALVVDDSHFMRTVISDILEDGGVDVVGTAENGARALDAVTDVQPDVITMDVEMPEMD 60 Query: 415 GWEATRQLKADPELQQTPVIALTAHAM--ASDREKAIAAGCDDYDTKP------------ 278 G EAT ++ + Q TP++ ++A A +A+ G D KP Sbjct: 61 GIEATAEIMRE---QPTPILMVSALTTEDADATLEAMEKGAIDTFAKPGGTISTELSGHS 117 Query: 277 IELPRLLSKIAQLLER*SH--RREPWLPP*PSTAMKLRRQFLLFGVGT 140 EL + ++A H EP PP +T+ LL G T Sbjct: 118 EELVAAVERVASADPTAGHDVEMEPASPPDATTSEYADNPTLLIGAST 165
>CHEY_TREPA (P96126) Chemotaxis protein cheY| Length = 144 Score = 51.6 bits (122), Expect = 2e-06 Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 4/122 (3%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVV-LAHDGAAGVDTARREQP--DLILMDMSLPVMD 416 ++ +V+D+ + + LT +G+EV A DG GV+ + P DL+ MD+++P MD Sbjct: 26 RVLVVDDSMFVSKQIGQILTSEGYEVADTAVDGVDGVEKYKAMSPGVDLVTMDITMPKMD 85 Query: 415 GWEATRQ-LKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 G A + L+ D + V+ ++A +KA+ G +Y KP++ ++L +IA + Sbjct: 86 GITALEKILEFD---KNAKVVIISALGKEELVKKALLLGAKNYIVKPLDRKKVLERIASV 142 Query: 238 LE 233 L+ Sbjct: 143 LK 144
>SPAR_BACSU (P33112) Subtilin biosynthesis regulatory protein spaR| Length = 220 Score = 51.2 bits (121), Expect = 2e-06 Identities = 37/121 (30%), Positives = 59/121 (48%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 M KI V+D +D ++ L R +V + D G + DLIL+D+ +P +DG Sbjct: 1 MAKILAVDDEKDILVLIQNILRRDQHQVDIL-DHVHGQPPDVFQGYDLILLDVMMPDIDG 59 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 233 +E +Q++ L P++ LTA K + G DDY TKP + L +++ L Sbjct: 60 FELCKQIRP---LVDCPILFLTAKTEEEAIVKGLITGGDDYITKPFGVRELSARVNAHLR 116 Query: 232 R 230 R Sbjct: 117 R 117
>LUXQ_VIBHA (P54302) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 859 Score = 51.2 bits (121), Expect = 2e-06 Identities = 35/105 (33%), Positives = 51/105 (48%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 K+ LVEDN N +L + +V A DG ++ DLILMD LP + G E Sbjct: 736 KVLLVEDNHTNAFILQAFCKKYKMQVDWAKDGLDAMELLSDTTYDLILMDNQLPHLGGIE 795 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 272 T +++ + L TP+ A TA + +AAG + KPI+ Sbjct: 796 TTHEIRQNLRL-GTPIYACTADTAKETSDAFMAAGANYVMLKPIK 839
>VRAR_STAES (Q8CNP9) Response regulator protein vraR| Length = 209 Score = 51.2 bits (121), Expect = 2e-06 Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 4/106 (3%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRL-TRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVM 419 K+ V+D+E +S L T++ EVV +GA+G D A +PDLILMD+ + M Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQEDIEVV--GEGASGKDAITKAHELKPDLILMDLLMDDM 61 Query: 418 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 281 DG EAT ++K D L Q V+ LT+ + +A+ +G D Y K Sbjct: 62 DGVEATTEIKKD--LPQIKVVMLTSFIEDKEVYRALDSGVDSYILK 105
>VRAR_STAEQ (Q5HN50) Response regulator protein vraR| Length = 209 Score = 51.2 bits (121), Expect = 2e-06 Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 4/106 (3%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRL-TRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVM 419 K+ V+D+E +S L T++ EVV +GA+G D A +PDLILMD+ + M Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQEDIEVV--GEGASGKDAITKAHELKPDLILMDLLMDDM 61 Query: 418 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 281 DG EAT ++K D L Q V+ LT+ + +A+ +G D Y K Sbjct: 62 DGVEATTEIKKD--LPQIKVVMLTSFIEDKEVYRALDSGVDSYILK 105
>VRAR_STAAW (Q7A0I0) Response regulator protein vraR| Length = 209 Score = 51.2 bits (121), Expect = 2e-06 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 3/105 (2%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 416 K+ V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMD 62 Query: 415 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 281 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAU (P0C0Z1) Response regulator protein vraR| Length = 209 Score = 51.2 bits (121), Expect = 2e-06 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 3/105 (2%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 416 K+ V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMD 62 Query: 415 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 281 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAS (Q6G850) Response regulator protein vraR| Length = 209 Score = 51.2 bits (121), Expect = 2e-06 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 3/105 (2%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 416 K+ V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMD 62 Query: 415 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 281 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAR (Q6GFH3) Response regulator protein vraR| Length = 209 Score = 51.2 bits (121), Expect = 2e-06 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 3/105 (2%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 416 K+ V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMD 62 Query: 415 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 281 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAN (Q7A4R9) Response regulator protein vraR| Length = 209 Score = 51.2 bits (121), Expect = 2e-06 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 3/105 (2%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 416 K+ V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMD 62 Query: 415 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 281 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAM (Q7A2Q1) Response regulator protein vraR| Length = 209 Score = 51.2 bits (121), Expect = 2e-06 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 3/105 (2%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 416 K+ V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMD 62 Query: 415 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 281 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAC (Q5HEP0) Response regulator protein vraR| Length = 209 Score = 51.2 bits (121), Expect = 2e-06 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 3/105 (2%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 416 K+ V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMDDMD 62 Query: 415 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 281 G EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>CHEB_RHILO (Q98PD1) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 339 Score = 51.2 bits (121), Expect = 2e-06 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 2/70 (2%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVV--LAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 +I +V D ++L R + G V +A +G V+ RR+ PDLILMD+++PVMDG Sbjct: 2 RIGVVNDMPMAVELLRRLVLSTGEHQVAWIATNGREAVEVCRRDLPDLILMDLAMPVMDG 61 Query: 412 WEATRQLKAD 383 EATR++ A+ Sbjct: 62 VEATRRIMAE 71
>CHEY_LISMO (P0A4H5) Chemotaxis protein cheY| Length = 119 Score = 51.2 bits (121), Expect = 2e-06 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 2/117 (1%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMD 416 M K+ +V+D M+ + FEVV A +G V +PD++ +D+++P MD Sbjct: 1 MLKLLIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYDEVKPDIVTLDITMPEMD 60 Query: 415 GWEATRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248 G EA Q+ A DP + A+ M D AI G D+ KP + R+L + Sbjct: 61 GLEALAQIMAKDPSAKVIMCSAMGQQGMVVD---AIKKGAKDFIVKPFQADRVLEAL 114
>CHEY_LISIN (P0A4H6) Chemotaxis protein cheY| Length = 119 Score = 51.2 bits (121), Expect = 2e-06 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 2/117 (1%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMD 416 M K+ +V+D M+ + FEVV A +G V +PD++ +D+++P MD Sbjct: 1 MLKLLIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYDEVKPDIVTLDITMPEMD 60 Query: 415 GWEATRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248 G EA Q+ A DP + A+ M D AI G D+ KP + R+L + Sbjct: 61 GLEALAQIMAKDPSAKVIMCSAMGQQGMVVD---AIKKGAKDFIVKPFQADRVLEAL 114
>SP0A_BACCI (P52931) Stage 0 sporulation protein A (Fragment)| Length = 210 Score = 50.8 bits (120), Expect = 3e-06 Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 2/118 (1%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRL-TRKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 K+C+V+DN + +L + + EV+ +AH+G ++ + +PD++++D+ +P +DG Sbjct: 5 KVCIVDDNRELVGLLEEYIDAQDDMEVIGVAHNGQECLELVEQLEPDVMVLDIIMPHIDG 64 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 +++ VI LTA +KA+ G + KP ++ L S I Q+ Sbjct: 65 LAVLERMR-QMNKPMPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMEYLASHIRQV 121
>RPFC_XANCP (P0C0F6) Sensory/regulatory protein rpfC (EC 2.7.13.3)| Length = 677 Score = 50.8 bits (120), Expect = 3e-06 Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 ++ + +D+E N +L R L + G +V+ + +D E D +++D+ +P M+G + Sbjct: 414 RMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLD 473 Query: 406 ATRQLKADPE--LQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 +QL+ ++ TPV+ L+A AG + KP+ +LL +A L Sbjct: 474 MLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADL 531
>MAK2_SCHPO (O14002) Peroxide stress-activated histidine kinase mak2 (EC| 2.7.13.3) (Mcs4-associated kinase 2) (His-Asp phosphorelay kinase phk1) Length = 2310 Score = 50.8 bits (120), Expect = 3e-06 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 9/125 (7%) Frame = -3 Query: 577 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQ---PDLILMDMSLPVMDGWE 407 + EDN +L+++L+ GF+V A DG V +Q +I D +P+ DG E Sbjct: 2183 IAEDNLIARKLLTKQLSNLGFQVHAAVDGVELVKMYEAKQFGFYSVIFADYHMPIRDGAE 2242 Query: 406 ATRQLKADPELQQT----PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ- 242 A ++A PVIALTA S +++ + G + Y TKP +L++ + + Sbjct: 2243 AVMDIRAYERENNCSTPIPVIALTADIQKSAKQRCLEVGMNFYLTKPFTQKQLVNAVREF 2302 Query: 241 -LLER 230 LLE+ Sbjct: 2303 VLLEK 2307
>SP0A_MOOTA (P52941) Stage 0 sporulation protein A homolog| Length = 256 Score = 50.8 bits (120), Expect = 3e-06 Identities = 28/118 (23%), Positives = 62/118 (52%), Gaps = 2/118 (1%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVV--LAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 K+ + +DN + ++L + V+ +AH+G ++ + ++PD++++D+ +P +DG Sbjct: 5 KVLIADDNREFCEVLEEYFNEQEDFVLSGVAHNGQETLELIQEQEPDIVILDIIMPHLDG 64 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 +L+ + ++ LTA S +++ G D Y KP +L L +++ QL Sbjct: 65 IGVLEKLQVLNFEPRPKIVILTALGQESMTMRSVELGADYYILKPFDLEVLGNRLRQL 122
>CHEY_THEMA (Q56312) Chemotaxis protein cheY| Length = 120 Score = 50.8 bits (120), Expect = 3e-06 Identities = 33/115 (28%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGW 410 ++ +V+D ML +T+ G+EV A +G V+ + +PD++ MD+++P M+G Sbjct: 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGI 63 Query: 409 EATRQ-LKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248 +A ++ +K DP + A+ AM + AI AG D+ KP + R++ + Sbjct: 64 DAIKEIMKIDPNAKIIVCSAMGQQAMVIE---AIKAGAKDFIVKPFQPSRVVEAL 115
>SP0A_CLOPA (P52940) Stage 0 sporulation protein A homolog| Length = 273 Score = 50.8 bits (120), Expect = 3e-06 Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVV--LAHDGAAGVDTARREQPDLILMDMSLPVMDGW 410 + + +DN++ ++L+ L + VV +A DG + ++PDL+++D+ +P MDG Sbjct: 8 VLIADDNKEFCNILNDYLLNQSDIVVVGIAKDGIEALKLIEEKKPDLVILDIIMPNMDGL 67 Query: 409 EATRQLKADPELQQTP-VIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 +L A+ + P VI L+A ++AI G D Y KP ++ +I Q+ Sbjct: 68 VVLEKL-ANINIDPVPNVIVLSAVGQDKITQRAITLGADYYVVKPFDMDVFTKRIRQM 124
>PILR_PSEAE (Q00934) Type 4 fimbriae expression regulatory protein pilR| Length = 445 Score = 50.8 bits (120), Expect = 3e-06 Identities = 36/117 (30%), Positives = 55/117 (47%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 K +V+D D ++L L R + A + + RE DL L DM LP G + Sbjct: 5 KALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLD 64 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236 + ++ QTPV +TA+ +A+ AG D+ TKP++L RL +A L Sbjct: 65 LVQYIQQ--RHPQTPVAMITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATAL 119
>RPFC_XANC8 (P0C0F7) Sensory/regulatory protein rpfC (EC 2.7.13.3)| Length = 677 Score = 50.4 bits (119), Expect = 4e-06 Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 ++ + +D+E N +L R L + G +V+ + +D E D +++D+ +P M+G + Sbjct: 414 RMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLD 473 Query: 406 ATRQLKADPE--LQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 +QL+ ++ TPV+ L+A AG + KP+ +LL +A L Sbjct: 474 MLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVLAAKLLDTLADL 531
>BVGS_BORPA (P40330) Virulence sensor protein bvgS precursor (EC 2.7.13.3)| Length = 1238 Score = 50.4 bits (119), Expect = 4e-06 Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 5/124 (4%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 ++ +V+D++ N +L ++L G VV A G A + D+++ D ++P ++G+E Sbjct: 974 RVLVVDDHKPNLMLLRQQLDYLGQRVVAADSGEAALALWHEHAFDVVITDCNMPGINGYE 1033 Query: 406 ATRQLKAD---PELQQTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 242 R+++A P +T I TA A + ++ AAG DD KPI + L ++ + Sbjct: 1034 LARRIRAAEAAPGYGRTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNE 1093 Query: 241 LLER 230 R Sbjct: 1094 AAAR 1097
>BVGS_BORBR (P26762) Virulence sensor protein bvgS precursor (EC 2.7.13.3)| Length = 1238 Score = 50.4 bits (119), Expect = 4e-06 Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 5/124 (4%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 ++ +V+D++ N +L ++L G VV A G A + D+++ D ++P ++G+E Sbjct: 974 RVLVVDDHKPNLMLLRQQLDYLGQRVVAADSGEAALALWHEHAFDVVITDCNMPGINGYE 1033 Query: 406 ATRQLKAD---PELQQTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 242 R+++A P +T I TA A + ++ AAG DD KPI + L ++ + Sbjct: 1034 LARRIRAAEAAPGYGRTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNE 1093 Query: 241 LLER 230 R Sbjct: 1094 AAAR 1097
>CHEY_YEREN (Q93P00) Chemotaxis protein cheY| Length = 128 Score = 50.4 bits (119), Expect = 4e-06 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 2/118 (1%) Frame = -3 Query: 577 LVEDNEDNWDMLSRRLTRK-GFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 LV D+ + R L ++ GF V A DG ++ R D ++ D ++P MDG + Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLRTGGFDFVVSDWNMPNMDGLDL 67 Query: 403 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 + ++AD L PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 68 LKTIRADGALGTLPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_CAMJE (P71129) Chemotaxis protein cheY homolog| Length = 130 Score = 50.4 bits (119), Expect = 4e-06 Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 2/119 (1%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVL-AHDGAAGVDT-ARREQPDLILMDMSLPVMDG 413 K+ +V+D+ ++ LTR G + VL A G D + E +++ D ++P M+G Sbjct: 2 KLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKNEDVKVLITDWNMPEMNG 61 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236 E ++++A+ + + P+I +T ++ A+ AG ++Y KP L K+ +L Sbjct: 62 LELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEDVL 120
>HNR_SHIFL (P0AEV3) Protein hnr| Length = 337 Score = 50.1 bits (118), Expect = 5e-06 Identities = 30/105 (28%), Positives = 55/105 (52%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +VED + +L + G VLA DG ++ PDL++ D+++P M+G + Sbjct: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 272 ++ + QTPV+ ++A +D KA+ G +D KP++ Sbjct: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>HNR_ECOLI (P0AEV1) Protein hnr| Length = 337 Score = 50.1 bits (118), Expect = 5e-06 Identities = 30/105 (28%), Positives = 55/105 (52%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +VED + +L + G VLA DG ++ PDL++ D+++P M+G + Sbjct: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 272 ++ + QTPV+ ++A +D KA+ G +D KP++ Sbjct: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>HNR_ECO57 (P0AEV2) Protein hnr| Length = 337 Score = 50.1 bits (118), Expect = 5e-06 Identities = 30/105 (28%), Positives = 55/105 (52%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I +VED + +L + G VLA DG ++ PDL++ D+++P M+G + Sbjct: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 272 ++ + QTPV+ ++A +D KA+ G +D KP++ Sbjct: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>LUXN_VIBHA (P54301) Autoinducer 1 sensor kinase/phosphatase luxN (EC 2.7.13.3)| (EC 3.1.3.-) Length = 849 Score = 50.1 bits (118), Expect = 5e-06 Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 1/83 (1%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 + +V+D E ++ L + G + A++G V+ + DLILMD+ +PVM+G++A Sbjct: 723 VLIVDDKEVQRALVQMYLNQLGVNSLQANNGENAVEVFKANHVDLILMDVQMPVMNGFDA 782 Query: 403 TRQLKADPELQ-QTPVIALTAHA 338 ++++K EL QTP++AL+ + Sbjct: 783 SQRIK---ELSPQTPIVALSGES 802
>RSTA_ECOLI (P52108) Transcriptional regulatory protein rstA| Length = 242 Score = 50.1 bits (118), Expect = 5e-06 Identities = 33/115 (28%), Positives = 54/115 (46%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 M I VED+ + +++ L + +V + G +T RE PDL+L+D+ LP DG Sbjct: 4 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 63 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 248 R L+A P++ LT+ + A+ G DY K LL+++ Sbjct: 64 MTICRDLRAK---WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARL 115
>PRR1_SCHPO (O14283) Transcription factor prr1 (Pombe response regulator 1)| Length = 539 Score = 49.7 bits (117), Expect = 7e-06 Identities = 38/117 (32%), Positives = 56/117 (47%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 +I LVED+E + M + LT +V +A DG V+ A DLILMD LP +DG Sbjct: 369 RILLVEDDELSRRMTIKFLTSFDCQVDVAVDGIGAVNKANAGGFDLILMDFILPNLDGLS 428 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236 T ++ TP++A+T++ +D G D KP LL + + L Sbjct: 429 VTCLIRQYD--HNTPILAITSNISMNDAVTYFNHGVTDLLVKPFTKLTLLQLLKKQL 483
>VRAR_STAHJ (Q4L7J5) Response regulator protein vraR| Length = 209 Score = 49.7 bits (117), Expect = 7e-06 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 3/105 (2%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 416 K+ V+D+E +S L+ + ++ + +G +G D A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIEIVGEGESGKDAIAKAHELKPDLILMDLLMDDMD 62 Query: 415 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 281 G EAT Q+K D L V+ LT+ + +A+ AG D Y K Sbjct: 63 GVEATTQIKKD--LPHIKVVMLTSFIEDKEVYRALDAGVDSYILK 105
>CHEB_DESPS (Q6AJV3) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 364 Score = 49.7 bits (117), Expect = 7e-06 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Frame = -3 Query: 520 GFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTA 344 G EV+ +AH+G +D R +PDLI +D+ +PVM+G E LK P+ +++ Sbjct: 28 GIEVIGVAHNGKIALDKIRLSKPDLITLDIEMPVMNGIELLEHLKDIPDAPGAVMLSTLT 87 Query: 343 HAMASDREKAIAAGCDDYDTKPIELPRLLSKIA 245 + KA+ G D+ KP E +K A Sbjct: 88 SDGSRMTMKALELGAFDFILKPQEKTPAANKAA 120
>VRAR_STAS1 (Q49YS9) Response regulator protein vraR| Length = 209 Score = 49.3 bits (116), Expect = 9e-06 Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 3/105 (2%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMD 416 K+ V+D+E +S L+ + ++ + +G +G D A +PDLILMD+ + MD Sbjct: 4 KVLFVDDHEMVRIGISSYLSTQS-DIDVVGEGKSGKDAIEKAHELKPDLILMDLLMDDMD 62 Query: 415 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 281 G EAT Q+K D L V+ LT++ ++ +A+ +G D Y K Sbjct: 63 GVEATEQVKKD--LPNIKVVMLTSYIEDNEVYRALDSGVDSYILK 105
>PMRA_PECCC (Q70FH0) Transcriptional regulatory protein pmrA| Length = 222 Score = 49.3 bits (116), Expect = 9e-06 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 9/128 (7%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPD---------LILMDM 434 K+ +VED+ +L ++G + L+H+G A ++ D L+++D+ Sbjct: 2 KLLIVEDD---------KLLQEGLLLALSHEGYACDCAGTAKEADALIGSAHYSLVILDL 52 Query: 433 SLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLS 254 LP DG + + + Q PV+ LTA DR + G DDY KP L L + Sbjct: 53 GLPDDDGLALLSRWRKNN--YQHPVLILTARDKVDDRVSGLDVGADDYLAKPFALTELQA 110 Query: 253 KIAQLLER 230 ++ L+ R Sbjct: 111 RVRALIRR 118
>BASR_SALTY (P36556) Transcriptional regulatory protein basR/pmrA| Length = 222 Score = 49.3 bits (116), Expect = 9e-06 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 9/134 (6%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAA--GVDTARREQPDL-------ILMDM 434 KI +VED+ L +G + +G A GV TAR + L +++D+ Sbjct: 2 KILIVEDDT---------LLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDL 52 Query: 433 SLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLS 254 LP DG +++ + PV+ LTAH +DR + G DDY KP L L + Sbjct: 53 GLPDEDGLHFLTRIRQ--KKYTLPVLILTAHDTLNDRITGLDVGADDYLVKPFALEELHA 110 Query: 253 KIAQLLER*SHRRE 212 +I LL R +++ E Sbjct: 111 RIRALLRRHNNQGE 124
>CHEY_YERPE (Q8D0P1) Chemotaxis protein cheY| Length = 128 Score = 49.3 bits (116), Expect = 9e-06 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Frame = -3 Query: 577 LVEDNEDNWDMLSRRLTRK-GFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 LV D+ + R L ++ GF V A DG ++ R D ++ D ++P MDG + Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFHNVEEAEDGVDALNKLRAGGFDFVVSDWNMPNMDGLDL 67 Query: 403 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 + ++ D L PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 68 LKTIRTDGALATLPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>SP0A_CLOAB (P58253) Stage 0 sporulation protein A homolog| Length = 281 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 2/117 (1%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVV--LAHDGAAGVDTARREQPDLILMDMSLPVMDGW 410 + + +DN++ ++L+ L + +V +A DG + ++PDL+++D+ +P +DG Sbjct: 8 VLIADDNKEFCNILNDYLLNQSDMIVVGIAKDGVEALKLIENKKPDLVVLDIIMPRLDGL 67 Query: 409 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 +L +I L+A ++AI G D Y KP ++ ++I ++ Sbjct: 68 GVLEKLNNKDAENLPRIIVLSAVGQDKITQRAITLGADYYVVKPFDMDVFTNRIREM 124
>TRPO_PSEAE (P24908) Putative transcriptional regulator| Length = 207 Score = 48.9 bits (115), Expect = 1e-05 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 1/113 (0%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMD 416 M+K+ +V+D+ + R GF +V A +GA + AR++ PDL ++D+ +P +D Sbjct: 1 MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKID 60 Query: 415 GWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLL 257 G E +LK+ T V+ LT A + + AG + +K L LL Sbjct: 61 GLEVIARLKS--LKLDTKVLVLTRQNPAQFAPRCLQAGAMGFVSKRENLSELL 111
>SP0A_BREPA (P52929) Stage 0 sporulation protein A (Fragment)| Length = 212 Score = 48.9 bits (115), Expect = 1e-05 Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRK-GFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 ++ L +DN + +L ++ + V+ +A++G V + PD++++D+ +P +DG Sbjct: 5 EVLLADDNREFVSLLEEYISSQYDMNVIGVAYNGNEVVRLLQERVPDVLILDIIMPHLDG 64 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236 Q++A Q +I LTA +KA+ G Y KP ++ L +I Q++ Sbjct: 65 LAVLEQIQAMRLSPQPKIIMLTAFGQEEITKKAVELGAAYYILKPFDMEVLAQRIRQII 123
>CHEY_SALTY (P0A2D5) Chemotaxis protein cheY| Length = 128 Score = 48.9 bits (115), Expect = 1e-05 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 410 K +V+D ++ L GF V A DG ++ + I+ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDGL 65 Query: 409 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_SALTI (P0A2D6) Chemotaxis protein cheY| Length = 128 Score = 48.9 bits (115), Expect = 1e-05 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 410 K +V+D ++ L GF V A DG ++ + I+ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDGL 65 Query: 409 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_ENTCL (Q9FAD7) Chemotaxis protein cheY| Length = 128 Score = 48.9 bits (115), Expect = 1e-05 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 410 K +V+D ++ L GF V A DG ++ + ++ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGL 65 Query: 409 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADAGMASMPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLGKIFEK 125
>SP0A_CLOBE (P52936) Stage 0 sporulation protein A homolog (Fragment)| Length = 223 Score = 48.9 bits (115), Expect = 1e-05 Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVV--LAHDGAAGVDTARREQPDLILMDMSLPVMDGW 410 + + +DN++ +L+ L + VV +A DG+ ++ +PDL+++D+ +P +DG Sbjct: 8 VLIADDNKEFCSILNDYLLNQKDIVVTGIAKDGSEALELIVERKPDLVILDIIMPHLDGL 67 Query: 409 EATRQLKADPELQQTP-VIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 +L +L++ P +I L+A ++AI G D Y KP ++ +I ++ Sbjct: 68 GVLEKLNT-MQLEKVPRIIILSAVGQDKITQQAITLGADYYTVKPFDMEVFTKRIREM 124
>ARCA_HAEIN (P44918) Aerobic respiration control protein arcA homolog| Length = 236 Score = 48.5 bits (114), Expect = 1e-05 Identities = 35/119 (29%), Positives = 54/119 (45%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI +VED + L +G++V A +G +L++MD++LP +G Sbjct: 5 KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLL 64 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+L+ + L P+I LT D+ + G DDY TKP L + LL R Sbjct: 65 LARELREELSL---PLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHR 120
>NTRC_SALTY (P41789) Nitrogen regulation protein NR(I)| Length = 469 Score = 48.5 bits (114), Expect = 1e-05 Identities = 30/121 (24%), Positives = 55/121 (45%) Frame = -3 Query: 571 EDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL 392 +D+ W +L R L G +G + + PD++L D+ +P MDG +Q+ Sbjct: 11 DDSSIRW-VLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQI 69 Query: 391 KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 212 K + PVI +TAH+ A G DY KP ++ ++ + + + +++ Sbjct: 70 KQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 Query: 211 P 209 P Sbjct: 128 P 128
>CHEY_SHIFL (P0AE69) Chemotaxis protein cheY| Length = 128 Score = 48.5 bits (114), Expect = 1e-05 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 410 K +V+D ++ L GF V A DG ++ + ++ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGL 65 Query: 409 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_ECOLI (P0AE67) Chemotaxis protein cheY| Length = 128 Score = 48.5 bits (114), Expect = 1e-05 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 410 K +V+D ++ L GF V A DG ++ + ++ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGL 65 Query: 409 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_ECO57 (P0AE68) Chemotaxis protein cheY| Length = 128 Score = 48.5 bits (114), Expect = 1e-05 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 410 K +V+D ++ L GF V A DG ++ + ++ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGL 65 Query: 409 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>RPFG_XANC8 (Q4UU85) Response regulator rpfG| Length = 378 Score = 48.1 bits (113), Expect = 2e-05 Identities = 26/74 (35%), Positives = 41/74 (55%) Frame = -3 Query: 454 DLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPI 275 DL+L+D +P MDG E R+L+ P + P+I +T R+ A+ AG D+ KPI Sbjct: 75 DLLLLDYRMPGMDGLEFARRLRRLPSHRDIPIILITIVGDEPIRQAALEAGVIDFLVKPI 134 Query: 274 ELPRLLSKIAQLLE 233 L ++ + LL+ Sbjct: 135 RPRELRARCSNLLQ 148
>CHEY_HELPJ (Q9ZM64) Chemotaxis protein cheY homolog| Length = 124 Score = 48.1 bits (113), Expect = 2e-05 Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLA--HDGAAGVDTARREQPDLILMDMSLPVMDG 413 K+ +V+D+ ++ L+R G+E VL H A +++ D ++P M+G Sbjct: 2 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 61 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236 + ++++AD ++ P+I +T ++ A+ AG ++Y KP L K+ +L Sbjct: 62 LDLVKKVRADNRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 120
>VANR_ENTFC (Q06239) Regulatory protein vanR| Length = 231 Score = 48.1 bits (113), Expect = 2e-05 Identities = 28/119 (23%), Positives = 55/119 (46%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI +V+D + D++ L + + V + ++ + + DL ++D+ LP G Sbjct: 4 KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLT 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 ++++ + P+I LT D+ + G DDY TKP L++++ L R Sbjct: 64 ICQKIR---DKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119
>CHEY_ECOL6 (Q8FGP6) Chemotaxis protein cheY| Length = 128 Score = 48.1 bits (113), Expect = 2e-05 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGW 410 K +V+D ++ L GF V A DG ++ + ++ D ++P MDG Sbjct: 6 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGLDALNKLQAGGYGFVISDWNMPNMDGL 65 Query: 409 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 E + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 66 ELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CCDB_BACSU (P45709) Protein ccdB| Length = 120 Score = 48.1 bits (113), Expect = 2e-05 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMD 416 MT++ +V+D + + L + + A DG D ++ +PDL+ MD+++PV + Sbjct: 1 MTRVLVVDDAKFMRVKIREILEEANYIIAGEAADGEQAADLYKKLRPDLVTMDITMPVKN 60 Query: 415 GWEATRQ-LKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 G +A R L DP+ + VI TA +AI G D+ KP E ++L ++++ Sbjct: 61 GIKALRDILTFDPKAK---VIMCTAMRQQRIVTEAIELGAKDFIVKPFEETKVLEAVSRV 117 Query: 238 L 236 + Sbjct: 118 M 118
>CHEB_VIBF1 (Q5E3S1) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 376 Score = 47.8 bits (112), Expect = 3e-05 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 12/147 (8%) Frame = -3 Query: 505 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQ-LKADPELQQTPVIALTA--HAM 335 +A +G V+ A+ +PD+I MD+ +PVMDG A R+ +KA P TP + ++ H Sbjct: 33 VAVNGKEAVEKAKSLKPDVITMDIEMPVMDGISAVREIMKACP----TPTLMFSSLTHDG 88 Query: 334 ASDREKAIAAGCDDYDTKPIE---------LPRLLSKIAQLLER*SHRREPWLPP*PSTA 182 A A+ AG D+ K E + L +IA++ + S R P L ++ Sbjct: 89 AKATLDALDAGALDFLPKKFEDIARNRDEAVSLLQKRIAEIARKKSFMRRPVLSSQSTST 148 Query: 181 MKLRRQFLLFGVGTTFTAIAAISLSDV 101 ++ R TT TA +A++ S V Sbjct: 149 VESR-------TATTRTATSALTASPV 168
>RCP1_SYNY3 (Q55169) Response regulator rcp1| Length = 147 Score = 47.8 bits (112), Expect = 3e-05 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 9/121 (7%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGF--EVVLAHDGAAGVDTARRE-------QPDLILMDMS 431 I LVED++ + ++ L E+++ DG A + +++ +P+LIL+D++ Sbjct: 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLN 70 Query: 430 LPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSK 251 LP DG E ++K +P+L++ PV+ LT D + + Y TK L L Sbjct: 71 LPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKM 130 Query: 250 I 248 + Sbjct: 131 V 131
>CHEB3_PSESM (Q886S8) Chemotaxis response regulator protein-glutamate| methylesterase of group 3 operon (EC 3.1.1.61) Length = 336 Score = 47.4 bits (111), Expect = 3e-05 Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 7/126 (5%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDG 413 KI +V D + L R L + V+ A +GA V + + PDLILMD+ +PVMDG Sbjct: 2 KIAIVNDMPMAIEALRRALAFEPAHQVIWVAANGADAVQRSIEQTPDLILMDLIMPVMDG 61 Query: 412 WEATRQLKADPELQQTP--VIALTAHAMASDREKAIAAG---CDDYDTKPIELPRLLSKI 248 EATR++ A +TP ++ +T + R A G D DT I P Sbjct: 62 VEATRRIMA-----ETPCAIVIVTVDREQNMRRVFEAMGHGALDVVDTPAIGGPNPREAA 116 Query: 247 AQLLER 230 A LL + Sbjct: 117 APLLRK 122
>CHEY_HELPY (P71403) Chemotaxis protein cheY homolog| Length = 124 Score = 47.4 bits (111), Expect = 3e-05 Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 2/119 (1%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLA--HDGAAGVDTARREQPDLILMDMSLPVMDG 413 K+ +V+D+ ++ L+R G+E VL H A +++ D ++P M+G Sbjct: 2 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 61 Query: 412 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 236 + +++++D ++ P+I +T ++ A+ AG ++Y KP L K+ +L Sbjct: 62 LDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 120
>CHEB1_RALEJ (Q46V28) Chemotaxis response regulator protein-glutamate| methylesterase 1 (EC 3.1.1.61) Length = 341 Score = 47.0 bits (110), Expect = 4e-05 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Frame = -3 Query: 517 FEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAH 341 FE+V +A DG V A PD+ILMD+ +PVMDG EATR++ A P++ +T Sbjct: 26 FEIVWVAGDGEQAVQLAASHTPDVILMDLLMPVMDGVEATRRIMA---ATPCPIVVVTTD 82 Query: 340 AMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 239 + + A G D ++ P L A+L Sbjct: 83 LGRNATQVFDAMGHGAIDA--VDTPTLTESDAKL 114
>CHEB3_PSE14 (Q48F23) Chemotaxis response regulator protein-glutamate| methylesterase 3 (EC 3.1.1.61) Length = 336 Score = 47.0 bits (110), Expect = 4e-05 Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 7/126 (5%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDG 413 KI +V D + L R L + ++ A +GA V + PDLILMD+ +PVMDG Sbjct: 2 KIAIVNDMPMAIEALRRALAFEPAHQIIWVASNGADAVQRCVEQTPDLILMDLIMPVMDG 61 Query: 412 WEATRQLKADPELQQTP--VIALTAHAMASDREKAIAAG---CDDYDTKPIELPRLLSKI 248 EATR++ A +TP ++ +T + R A G D DT I P Sbjct: 62 VEATRRIMA-----ETPCAIVIVTVDREQNMRRVFEAMGHGALDVVDTPAIGGPNPKEAA 116 Query: 247 AQLLER 230 A LL + Sbjct: 117 APLLRK 122
>LIAR_BACSU (O32197) Sensory transduction protein liaR| Length = 211 Score = 47.0 bits (110), Expect = 4e-05 Identities = 49/148 (33%), Positives = 71/148 (47%), Gaps = 17/148 (11%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRL-TRKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVM 419 M ++ L++D+E L+ L + EV+ A DG+ GV A PD+ILMD+ + M Sbjct: 1 MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGM 60 Query: 418 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDY---DTKPIEL------- 269 DG EAT+Q+ EL +I LT+ I AG Y +K E+ Sbjct: 61 DGIEATKQICR--ELSDPKIIVLTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAA 118 Query: 268 ----PRLLSKIA-QLLER*SHRREPWLP 200 P+L SK+A ++L R H E LP Sbjct: 119 SKGEPKLESKVAGKVLSRLRHSGENALP 146
>GACA_PSEU2 (Q52376) Response regulator gacA (Global activator)| Length = 214 Score = 46.6 bits (109), Expect = 6e-05 Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 7/122 (5%) Frame = -3 Query: 592 MTKICLVEDNEDNWDMLSRRLTRK-----GFEVV-LAHDGAAGVDTARREQPDLILMDMS 431 M K+ +V+D+ D++ +TR G +VV A G + AR +PD++LMD+ Sbjct: 1 MIKVLVVDDH----DLVRTGITRMLADIDGLQVVGQADSGEESLKKARELKPDVVLMDVK 56 Query: 430 LPVMDGWEATRQ-LKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLS 254 +P + G EATR+ L++ P+++ V+A+T + + AG Y TK L ++ Sbjct: 57 MPGIGGLEATRKMLRSHPDIK---VVAVTVCEEDPFPTRLLQAGAAGYMTKGAGLAEMVQ 113 Query: 253 KI 248 I Sbjct: 114 AI 115
>CHEB2_PSEU2 (Q4ZWW3) Chemotaxis response regulator protein-glutamate| methylesterase 2 (EC 3.1.1.61) Length = 336 Score = 46.6 bits (109), Expect = 6e-05 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDG 413 KI +V D + L R L + ++ A +GA V + PDLILMD+ +PVMDG Sbjct: 2 KIAIVNDMPMAIEALRRALAFEPAHQIIWVASNGADAVQRCVEQTPDLILMDLIMPVMDG 61 Query: 412 WEATRQLKAD 383 EATR++ A+ Sbjct: 62 VEATRRIMAE 71
>RSSB_SERMA (Q8GP20) Swarming motility regulation protein rssB| Length = 219 Score = 46.6 bits (109), Expect = 6e-05 Identities = 35/118 (29%), Positives = 54/118 (45%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 I LVED+ L R L GF + A + DL+L+D++LP DG + Sbjct: 3 ILLVEDDLQLGKALCRALELAGFNLCWVRLIADAENKLSSGGFDLMLLDLTLPDGDGLQK 62 Query: 403 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 +A Q P+I LTA ++ +G +D+ KP LP L+S++ + R Sbjct: 63 LIAWRAAG--QNIPIIILTARDRIESLVNSLDSGANDFLAKPFALPELISRVKAVNRR 118
>SP0F_BACTK (P52942) Sporulation initiation phosphotransferase F (EC 2.7.-.-)| (Stage 0 sporulation protein F) Length = 122 Score = 46.6 bits (109), Expect = 6e-05 Identities = 28/109 (25%), Positives = 54/109 (49%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 407 KI +V+D +L ++G++ A +G +D +++ PDL+++DM +P MDG E Sbjct: 4 KILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPDLVVLDMKIPGMDGIE 63 Query: 406 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 260 + K E VI ++A+ ++A G + KP ++ + Sbjct: 64 IFKACKEIDE--SIKVILMSAYGELDMIQEAKDLGALMHFAKPFDIDEI 110
>CHEV_BACSU (P37599) Chemotaxis protein cheV| Length = 303 Score = 46.2 bits (108), Expect = 7e-05 Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 10/123 (8%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGA----------AGVDTARREQPDLILMD 437 K+ +VED+ +L L G+ + + + A +T +Q D+I+ D Sbjct: 176 KLIIVEDSPLLMRLLQDELKEAGYNNIASFENGKEAYEYIMNLAENETDLSKQIDMIITD 235 Query: 436 MSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLL 257 + +P MDG T+ LK +P+ PV+ ++ R + G D+ +KP E+ L+ Sbjct: 236 IEMPKMDGHRLTKLLKENPKSSDVPVMIFSSLITDDLRHRGEVVGADEQISKP-EISDLI 294 Query: 256 SKI 248 K+ Sbjct: 295 KKV 297
>CHEB3_PSEPK (Q88MS5) Chemotaxis response regulator protein-glutamate| methylesterase of group 3 operon (EC 3.1.1.61) Length = 337 Score = 46.2 bits (108), Expect = 7e-05 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLTRKGFEVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDG 413 KI +V D + L R + + V+ A +GA V + PDLILMD+ +PVMDG Sbjct: 2 KIAIVNDMPLAVEALRRAVALEPAHQVVWVASNGAEAVQRCTEQLPDLILMDLIMPVMDG 61 Query: 412 WEATRQLKAD 383 EATR++ A+ Sbjct: 62 VEATRRIMAE 71
>CHEB1_PSEPF (Q3KHF6) Chemotaxis response regulator protein-glutamate| methylesterase 1 (EC 3.1.1.61) Length = 336 Score = 46.2 bits (108), Expect = 7e-05 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Frame = -3 Query: 586 KICLVEDNEDNWDMLSRRLT-RKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDG 413 KI +V D + L R L +VV +A +GA V PDLILMD+ +PVMDG Sbjct: 2 KIAIVNDMPLAVEALRRALAFEPAHQVVWVASNGAEAVRLCAENTPDLILMDLIMPVMDG 61 Query: 412 WEATRQLKAD 383 EATR++ A+ Sbjct: 62 VEATRRIMAE 71
>ARCA_SHIFL (P0A9Q4) Aerobic respiration control protein arcA| Length = 238 Score = 46.2 bits (108), Expect = 7e-05 Identities = 34/118 (28%), Positives = 52/118 (44%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 I +VED + L +G++V A DGA +L++MD++LP +G Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 Query: 403 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+L+ E ++ LT D+ + G DDY TKP L + LL R Sbjct: 66 ARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120
>ARCA_ECOLI (P0A9Q1) Aerobic respiration control protein arcA (Dye resistance| protein) Length = 238 Score = 46.2 bits (108), Expect = 7e-05 Identities = 34/118 (28%), Positives = 52/118 (44%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 I +VED + L +G++V A DGA +L++MD++LP +G Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 Query: 403 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+L+ E ++ LT D+ + G DDY TKP L + LL R Sbjct: 66 ARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120
>ARCA_ECOL6 (P0A9Q2) Aerobic respiration control protein arcA| Length = 238 Score = 46.2 bits (108), Expect = 7e-05 Identities = 34/118 (28%), Positives = 52/118 (44%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 I +VED + L +G++V A DGA +L++MD++LP +G Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 Query: 403 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+L+ E ++ LT D+ + G DDY TKP L + LL R Sbjct: 66 ARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120
>ARCA_ECO57 (P0A9Q3) Aerobic respiration control protein arcA| Length = 238 Score = 46.2 bits (108), Expect = 7e-05 Identities = 34/118 (28%), Positives = 52/118 (44%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 I +VED + L +G++V A DGA +L++MD++LP +G Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65 Query: 403 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 230 R+L+ E ++ LT D+ + G DDY TKP L + LL R Sbjct: 66 ARELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120
>DCTR_BACSU (P96602) Probable C4-dicarboxylate response regulator dctR| Length = 226 Score = 45.8 bits (107), Expect = 1e-04 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 8/117 (6%) Frame = -3 Query: 586 KICLVEDN----EDNWDMLSRRLTRKGFEV-VLAHDGAAGVDTARREQPDLILMDMSLPV 422 K+ L+ED+ E N D ++ T KG V A +G G+ + EQPDL+++D+ +P Sbjct: 7 KVLLIEDDPMVQEVNKDFIT---TVKGVTVCATAGNGEEGMKLIKEEQPDLVILDVYMPK 63 Query: 421 MDGWEATRQLKADPELQQTPVIALTAHAMASDREK---AIAAGCDDYDTKPIELPRL 260 DG + ++++ + + VI ++A A D+E + G DY KP +L R+ Sbjct: 64 KDGIKTLQEIR--KQKLEVDVIVVSA---AKDKETISLMLQNGAVDYILKPFKLERM 115
>ACTR_RHIME (Q52913) Acid tolerance regulatory protein actR| Length = 194 Score = 45.8 bits (107), Expect = 1e-04 Identities = 36/138 (26%), Positives = 63/138 (45%) Frame = -3 Query: 583 ICLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 404 + +V+D+ L+R + +GF V +A A G+ A+ P ++D+ L G + Sbjct: 25 LLIVDDDTAFLRRLARAMEARGFAVEIAESVAEGIAKAKTRPPKHAVIDLRLSDGSGLDV 84 Query: 403 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*S 224 ++ T +I LT + + A+ G DY KP + +L A L++R Sbjct: 85 IEAIRG--RRDDTRMIVLTGYGNIATAVNAVKLGALDYLAKPADADDIL---AALIQRPG 139 Query: 223 HRREPWLPP*PSTAMKLR 170 R EP P P +A ++R Sbjct: 140 ERVEP--PENPMSADRVR 155
>CHEB_SYMTH (Q67P67) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 362 Score = 45.8 bits (107), Expect = 1e-04 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Frame = -3 Query: 502 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAM--AS 329 A DG G++ + QPD++ +D+ +P +DG+ R++ A + TPV+ +++H A Sbjct: 40 ARDGQDGLEKVLQLQPDVVTLDIEMPRLDGYGTLREIMA---RRPTPVVMVSSHTREGAE 96 Query: 328 DREKAIAAGCDDYDTKP 278 +A+A G D+ KP Sbjct: 97 ATIRALALGAVDFVAKP 113 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,307,305 Number of Sequences: 219361 Number of extensions: 1865847 Number of successful extensions: 7626 Number of sequences better than 10.0: 488 Number of HSP's better than 10.0 without gapping: 7041 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7438 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
