ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart14d11 |
|---|---|
| Clone Library Name | barley_pub |
>PLED_CAUCR (Q9A5I5) Response regulator pleD (Stalked cell| differentiation-controlling protein) [Includes: Diguanylate cyclase (EC 4.6.1.-) (DGC)] Length = 454 Score = 82.4 bits (202), Expect = 8e-16 Identities = 43/114 (37%), Positives = 68/114 (59%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D E N +L +LT + +EV A DG + A R+ PD+IL+D+ +P MDG+ Sbjct: 6 LVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVC 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 238 R+LK DP + PV+ +TA DR + + +G D+ TKPI+ L +++ L Sbjct: 66 RKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSL 119 Score = 37.4 bits (85), Expect = 0.031 Identities = 26/117 (22%), Positives = 55/117 (47%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+DNE ++ L + V+ + A + DL++++ + DG T Sbjct: 157 LIVDDNERQAQRVAAELGVEHRPVIESDPEKAKISAGG--PVDLVIVNAAAKNFDGLRFT 214 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 L+++ +Q PV+A+ KA+ G +D ++PI+ L +++ ++R Sbjct: 215 AALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQR 271
>BARA_ECOLI (P0AEC5) Signal transduction histidine-protein kinase barA (EC| 2.7.13.3) Length = 918 Score = 82.0 bits (201), Expect = 1e-15 Identities = 47/107 (43%), Positives = 60/107 (56%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 + V+DN N ++ L V L G V+ A++ DLILMD+ +P MDG A Sbjct: 671 MAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRAC 730 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 259 + P QQTPVIA+TAHAMA +EK + AG DY KPIE RL Sbjct: 731 ELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>BARA_ECOL6 (P0AEC6) Signal transduction histidine-protein kinase barA (EC| 2.7.13.3) Length = 918 Score = 82.0 bits (201), Expect = 1e-15 Identities = 47/107 (43%), Positives = 60/107 (56%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 + V+DN N ++ L V L G V+ A++ DLILMD+ +P MDG A Sbjct: 671 MAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRAC 730 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 259 + P QQTPVIA+TAHAMA +EK + AG DY KPIE RL Sbjct: 731 ELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>BARA_ECO57 (P0AEC7) Signal transduction histidine-protein kinase barA (EC| 2.7.13.3) Length = 918 Score = 82.0 bits (201), Expect = 1e-15 Identities = 47/107 (43%), Positives = 60/107 (56%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 + V+DN N ++ L V L G V+ A++ DLILMD+ +P MDG A Sbjct: 671 MAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRAC 730 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 259 + P QQTPVIA+TAHAMA +EK + AG DY KPIE RL Sbjct: 731 ELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>GACS_PSESY (P48027) Sensor protein gacS (EC 2.7.13.3)| Length = 907 Score = 80.9 bits (198), Expect = 2e-15 Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 3/105 (2%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L V+DN N ++ L G EVV G A V+ ++E DL+LMD+ +P MDG +AT Sbjct: 660 LCVDDNPANLLLVQTLLEDMGAEVVAVEGGYAAVNAVQQEAFDLVLMDVQMPGMDGRQAT 719 Query: 399 RQLKA-DPELQQT--PVIALTAHAMASDREKAIAAGCDDYDTKPI 274 ++A + E Q+ P++ALTAHAMA+++ + +G DDY TKPI Sbjct: 720 EAIRAWEAERNQSSLPIVALTAHAMANEKRSLLQSGMDDYLTKPI 764
>BARA_SHIFL (P59342) Signal transduction histidine-protein kinase barA (EC| 2.7.13.3) Length = 918 Score = 80.5 bits (197), Expect = 3e-15 Identities = 46/107 (42%), Positives = 60/107 (56%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 + V+DN N ++ L V L G V+ A++ DLILMD+ +P MDG A Sbjct: 671 MAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRAC 730 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 259 + P +QTPVIA+TAHAMA +EK + AG DY KPIE RL Sbjct: 731 ELIHQLPHQRQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERL 777
>PILH_PSEAE (P43501) Protein pilH| Length = 121 Score = 80.1 bits (196), Expect = 4e-15 Identities = 43/115 (37%), Positives = 67/115 (58%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ L+ L + G +V+ A +G GV AR+E+PD++LMD+ +P ++G++AT Sbjct: 5 LIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQAT 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 235 RQL D E PVI +T +D+ G DY TKP++ LL I +L Sbjct: 65 RQLTKDAETSAIPVIIVTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVL 119
>PRRA_MYCTU (P0A5Z6) Transcriptional regulatory protein prrA| Length = 233 Score = 79.3 bits (194), Expect = 7e-15 Identities = 44/117 (37%), Positives = 64/117 (54%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ D L R L GFEV A DGA + +A +PD I++D+++PV+DG Sbjct: 11 LVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVV 70 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 L+A PV L+A + DR + AG DDY KP L L++++ LL R Sbjct: 71 TALRAMD--NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125
>PRRA_MYCBO (P0A5Z7) Transcriptional regulatory protein prrA| Length = 233 Score = 79.3 bits (194), Expect = 7e-15 Identities = 44/117 (37%), Positives = 64/117 (54%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ D L R L GFEV A DGA + +A +PD I++D+++PV+DG Sbjct: 11 LVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVV 70 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 L+A PV L+A + DR + AG DDY KP L L++++ LL R Sbjct: 71 TALRAMD--NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125
>YYCF_BACSU (P37478) Transcriptional regulatory protein yycF| Length = 235 Score = 78.2 bits (191), Expect = 2e-14 Identities = 44/117 (37%), Positives = 65/117 (55%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D + D+L L ++G+EV AHDG V+ QPDLIL+D+ LP DG E Sbjct: 6 LVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVC 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+++ ++ P+I LTA D+ + G DDY TKP LL+++ L R Sbjct: 66 REVRKKYDM---PIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119
>PRRA_MYCLE (Q50136) Transcriptional regulatory protein prrA| Length = 233 Score = 77.8 bits (190), Expect = 2e-14 Identities = 44/117 (37%), Positives = 63/117 (53%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ D L R L GFEV A DGA + A +PD I++D+++PV+DG Sbjct: 11 LVVDDDSDVLASLERGLRLSGFEVSTAIDGAEALRNATETRPDAIVLDINMPVLDGVSVV 70 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 L+A PV L+A + DR + AG DDY KP L L++++ LL R Sbjct: 71 TALRAMD--NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125
>IRLR_BURPS (O31395) Transcriptional activator protein irlR| Length = 229 Score = 77.0 bits (188), Expect = 4e-14 Identities = 42/117 (35%), Positives = 59/117 (50%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED L + LT GF DG G+ A E+ DLI++D+ LP DGW Sbjct: 4 LIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGWTVL 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 +L+ TPV+ LTA DR K + G DDY KP + L++++ +L R Sbjct: 64 ERLR---RAHSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRR 117
>PHOB_RHIME (Q52990) Phosphate regulon transcriptional regulatory protein phoB| Length = 227 Score = 76.6 bits (187), Expect = 5e-14 Identities = 41/116 (35%), Positives = 62/116 (53%) Frame = -2 Query: 576 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 397 +VED E +L L +GFEV G + PDL+++D LP + G E R Sbjct: 7 VVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSGIELCR 66 Query: 396 QLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 +L+ PE ++ P+I LTA S+R + +A G DDY KP P L++++ +L R Sbjct: 67 RLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122
>YEDW_ECOLI (P76340) Probable transcriptional regulatory protein yedW| Length = 223 Score = 75.9 bits (185), Expect = 8e-14 Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 1/115 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LL+EDN+ + +++ L+ G+ + DG G+ A ++ LI++D+ LP MDGW+ Sbjct: 4 LLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQIL 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI-AQL 238 + L+ +QTPVI LTA DR + + +G +DY KP LL+++ AQL Sbjct: 64 QTLRT---AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQL 115
>COPR_PSESM (Q02540) Transcriptional activator protein copR| Length = 227 Score = 75.9 bits (185), Expect = 8e-14 Identities = 44/117 (37%), Positives = 59/117 (50%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+ ED L + L GF V G VD A E DL+++D+ +P +DGWE Sbjct: 4 LVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGWEVI 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+L+ Q PV+ LTA DR K + G DDY KP L LL+++ LL R Sbjct: 64 RRLRTAG--QPVPVLFLTARDGVDDRVKGLELGADDYLVKPFALSELLARVRTLLRR 118
>YKOG_BACSU (O34903) Hypothetical sensory transduction protein ykoG| Length = 228 Score = 75.9 bits (185), Expect = 8e-14 Identities = 43/117 (36%), Positives = 63/117 (53%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED E +L L +G+ V + H+G G+D A L+L+D+ LP + G E Sbjct: 7 LIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLEVL 66 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+L+ QTPVI LTA D+ + G +DY TKP E+ LL++I L + Sbjct: 67 RRLRKTD--SQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQ 121
>CZCR_RALME (Q44006) Transcriptional activator protein czcR| Length = 225 Score = 75.5 bits (184), Expect = 1e-13 Identities = 41/117 (35%), Positives = 64/117 (54%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED + L + L+ GF V +A++G G+ A D+I++D+ LP MDGW Sbjct: 4 LVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGWTVI 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 + +++ E TPV+ LTA +DR + G DDY KP LL++I + L + Sbjct: 64 KSIRSKSE---TPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQ 117
>YXDJ_BACSU (P42421) Sensory transduction protein yxdJ| Length = 229 Score = 75.1 bits (183), Expect = 1e-13 Identities = 41/117 (35%), Positives = 69/117 (58%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 ++VED+ED +L L + G++ V+A D A +D RE+PD++L+D++LP DG+ Sbjct: 5 MIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWC 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 RQ++ + +P+I ++A + D+ AI G DDY KP +L+KI + R Sbjct: 65 RQIR---QHSTSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRR 118
>PCOR_ECOLI (Q47456) Transcriptional regulatory protein pcoR| Length = 226 Score = 75.1 bits (183), Expect = 1e-13 Identities = 39/117 (33%), Positives = 64/117 (54%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED + L + L +G++ L ++G G+ A + Q DLI++D+ LP +DGW+ Sbjct: 5 LIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQII 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 L+ + PV+ LTA D+ K + G DDY KP + L++++ LL R Sbjct: 65 SALRESG--HEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRR 119
>CUSR_ECOLI (P0ACZ8) Transcriptional regulatory protein cusR| Length = 227 Score = 74.7 bits (182), Expect = 2e-13 Identities = 42/117 (35%), Positives = 63/117 (53%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED + + L++ LT GF V LA +G G A DLI++D+ LP ++GW+ Sbjct: 4 LIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIV 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R L++ + P++ LTA R K + G DDY KP LL+++ LL R Sbjct: 64 RMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>CUSR_ECOL6 (P0ACZ9) Transcriptional regulatory protein cusR| Length = 227 Score = 74.7 bits (182), Expect = 2e-13 Identities = 42/117 (35%), Positives = 63/117 (53%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED + + L++ LT GF V LA +G G A DLI++D+ LP ++GW+ Sbjct: 4 LIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIV 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R L++ + P++ LTA R K + G DDY KP LL+++ LL R Sbjct: 64 RMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>CUSR_ECO57 (P0AD00) Transcriptional regulatory protein cusR| Length = 227 Score = 74.7 bits (182), Expect = 2e-13 Identities = 42/117 (35%), Positives = 63/117 (53%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED + + L++ LT GF V LA +G G A DLI++D+ LP ++GW+ Sbjct: 4 LIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIV 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R L++ + P++ LTA R K + G DDY KP LL+++ LL R Sbjct: 64 RMLRS--ANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>ARLR_STAAW (P0C001) Response regulator arlR| Length = 219 Score = 74.7 bits (182), Expect = 2e-13 Identities = 40/117 (34%), Positives = 66/117 (56%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G E Sbjct: 5 LIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEIC 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L R Sbjct: 65 RKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR 118
>ARLR_STAAU (Q9KJN4) Response regulator arlR| Length = 219 Score = 74.7 bits (182), Expect = 2e-13 Identities = 40/117 (34%), Positives = 66/117 (56%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G E Sbjct: 5 LIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEIC 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L R Sbjct: 65 RKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR 118
>ARLR_STAAS (Q6G9E6) Response regulator arlR| Length = 219 Score = 74.7 bits (182), Expect = 2e-13 Identities = 40/117 (34%), Positives = 66/117 (56%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G E Sbjct: 5 LIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEIC 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L R Sbjct: 65 RKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR 118
>ARLR_STAAR (Q6GGZ3) Response regulator arlR| Length = 219 Score = 74.7 bits (182), Expect = 2e-13 Identities = 40/117 (34%), Positives = 66/117 (56%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G E Sbjct: 5 LIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEIC 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L R Sbjct: 65 RKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR 118
>ARLR_STAAN (Q99U73) Response regulator arlR| Length = 214 Score = 74.7 bits (182), Expect = 2e-13 Identities = 40/117 (34%), Positives = 66/117 (56%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G E Sbjct: 5 LIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEIC 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L R Sbjct: 65 RKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR 118
>ARLR_STAAM (P0C000) Response regulator arlR| Length = 219 Score = 74.7 bits (182), Expect = 2e-13 Identities = 40/117 (34%), Positives = 66/117 (56%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G E Sbjct: 5 LIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEIC 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L R Sbjct: 65 RKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR 118
>ARLR_STAAC (Q5HG04) Response regulator arlR| Length = 219 Score = 74.7 bits (182), Expect = 2e-13 Identities = 40/117 (34%), Positives = 66/117 (56%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED ++ L LT + + V +DG G+D A DLI++D+ LP ++G E Sbjct: 5 LIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEIC 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+++ + Q TP+I +TA + D+ + G DDY KP ++ LL++I +L R Sbjct: 65 RKIR---QQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR 118
>YSO1_PLEBO (P51586) Hypothetical 14.6 kDa protein in sodA1 3'region (ORF131)| Length = 131 Score = 74.7 bits (182), Expect = 2e-13 Identities = 39/113 (34%), Positives = 67/113 (59%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ D D+L L +G V +A + + RE P L++ D+++P MDG+E Sbjct: 10 LVVDDDPDTRDLLRFMLEDEGAIVTVAPNAKEALSLLERELPKLLVSDVAMPEMDGFELI 69 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 241 +++ P+ + P IALTA+A DR+ A+ +G +DY TKP++ L+ + Q Sbjct: 70 GRVRELPKGETLPAIALTAYAREEDRQAALRSGFNDYLTKPVDPLELIRLVQQ 122
>PHOP_BACSU (P13792) Alkaline phosphatase synthesis transcriptional regulatory| protein phoP Length = 240 Score = 74.3 bits (181), Expect = 2e-13 Identities = 40/117 (34%), Positives = 64/117 (54%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D E +L L R G++V+ A DG + A E+PDLI++D+ LP +DG E Sbjct: 6 LVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVC 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 +QL+ + P++ LTA D+ + G DDY TKP + +++ +L R Sbjct: 66 KQLR--QQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120
>SILR_SALTY (Q9ZHD3) Probable transcriptional regulatory protein silR| Length = 228 Score = 73.6 bits (179), Expect = 4e-13 Identities = 42/117 (35%), Positives = 63/117 (53%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED+ + LS+ LT GF V A +G G A + DL+++D+ LP ++GW+ Sbjct: 4 LIVEDDIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWDII 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R L++ + PV+ LTA R K + G DDY KP LL+++ LL R Sbjct: 64 RMLRSAG--KGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>REGX3_MYCTU (Q11156) Sensory transduction protein regX3| Length = 227 Score = 72.8 bits (177), Expect = 7e-13 Identities = 42/117 (35%), Positives = 62/117 (52%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED E D L+ L ++GFE + DG A + R D++L+D+ LP M G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVC 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 +QL+A PVI +TA D+ + G DDY TKP L+++I +L R Sbjct: 65 KQLRA---RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>REGX3_MYCBO (O07130) Sensory transduction protein regX3| Length = 227 Score = 72.8 bits (177), Expect = 7e-13 Identities = 42/117 (35%), Positives = 62/117 (52%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED E D L+ L ++GFE + DG A + R D++L+D+ LP M G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVC 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 +QL+A PVI +TA D+ + G DDY TKP L+++I +L R Sbjct: 65 KQLRA---RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>REGX3_MYCSM (Q9F868) Sensory transduction protein regX3| Length = 228 Score = 72.8 bits (177), Expect = 7e-13 Identities = 41/117 (35%), Positives = 62/117 (52%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED E D L+ L ++GFE + DG + + R D++L+D+ LP M G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDVC 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 +QL+A PVI +TA D+ + G DDY TKP L+++I +L R Sbjct: 65 KQLRA---RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>TCTD_SALTY (P22104) Transcriptional regulatory protein tctD| Length = 224 Score = 72.4 bits (176), Expect = 9e-13 Identities = 43/117 (36%), Positives = 61/117 (52%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LL EDN + L + L + GF V DG A E L ++D+++P MDG E Sbjct: 4 LLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGLEVV 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 ++L+ Q PV+ LTA + +DR K + G DDY KP EL L +++ LL R Sbjct: 64 QRLRKRG--QTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRR 118
>PFER_PSEAE (Q04803) Transcriptional activator protein pfeR| Length = 305 Score = 72.4 bits (176), Expect = 9e-13 Identities = 43/117 (36%), Positives = 61/117 (52%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLVED+ + L R+GF V + DG+ G++ A RE DL+L+D+ LP +DG Sbjct: 81 LLVEDDPRLREDLDAHFRRRGFRVTVCGDGSHGLEAAGREAFDLVLLDIMLPGLDGLALL 140 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 L+ + Q TPV+ ++A DR G DDY KP L L ++ LL R Sbjct: 141 ESLRRE---QATPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAELDARTDALLRR 194
>YCF27_PORAE (P28835) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 240 Score = 72.0 bits (175), Expect = 1e-12 Identities = 37/117 (31%), Positives = 67/117 (57%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+++D +L RL+ G++V+ A DG + +RE P+L+++D+ +P +DG+ Sbjct: 7 LVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFKREHPNLVVLDLMMPKLDGYGVC 66 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 ++L+ + ++ P+I LTA + SDR + G DDY KP L ++I +L R Sbjct: 67 QELRKESDV---PIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRR 120
>CPXR_SHIFL (P0AE90) Transcriptional regulatory protein cpxR| Length = 232 Score = 72.0 bits (175), Expect = 1e-12 Identities = 46/123 (37%), Positives = 67/123 (54%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLV+D+ + +L L +GF V++AHDG +D + DL+L+D+ +P +G + Sbjct: 5 LLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT- 62 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SH 220 LKA + QTPVI LTA DR + G DDY KP L+++I +L R SH Sbjct: 63 --LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR-SH 119 Query: 219 RRE 211 E Sbjct: 120 WSE 122
>CPXR_ECOLI (P0AE88) Transcriptional regulatory protein cpxR| Length = 232 Score = 72.0 bits (175), Expect = 1e-12 Identities = 46/123 (37%), Positives = 67/123 (54%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLV+D+ + +L L +GF V++AHDG +D + DL+L+D+ +P +G + Sbjct: 5 LLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT- 62 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SH 220 LKA + QTPVI LTA DR + G DDY KP L+++I +L R SH Sbjct: 63 --LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR-SH 119 Query: 219 RRE 211 E Sbjct: 120 WSE 122
>CPXR_ECO57 (P0AE89) Transcriptional regulatory protein cpxR| Length = 232 Score = 72.0 bits (175), Expect = 1e-12 Identities = 46/123 (37%), Positives = 67/123 (54%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLV+D+ + +L L +GF V++AHDG +D + DL+L+D+ +P +G + Sbjct: 5 LLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT- 62 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SH 220 LKA + QTPVI LTA DR + G DDY KP L+++I +L R SH Sbjct: 63 --LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR-SH 119 Query: 219 RRE 211 E Sbjct: 120 WSE 122
>AFSQ1_STRCO (Q04942) Transcriptional regulatory protein afsQ1| Length = 225 Score = 71.6 bits (174), Expect = 1e-12 Identities = 42/117 (35%), Positives = 65/117 (55%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LL+ED++ L LTR+G V A G G+ R ++PDLI++D+ LP +DG+E Sbjct: 5 LLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+++ Q P+I LTA D + +G DDY KP++ L ++I +L R Sbjct: 65 RRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118
>YRKP_BACSU (P54443) Hypothetical sensory transduction protein yrkP| Length = 231 Score = 71.2 bits (173), Expect = 2e-12 Identities = 39/117 (33%), Positives = 65/117 (55%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED+ED D+L LTR G+EV+ A DG + + DL+++D+ +P + G E Sbjct: 6 LVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQLV-NDSLDLVILDIMMPGISGIETC 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 + ++ + P++ LTA + D+ + + AG DDY TKP L +++ L R Sbjct: 65 QHIR---KSSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRR 118
>YCLJ_BACSU (P94413) Hypothetical sensory transduction protein yclJ| Length = 227 Score = 70.9 bits (172), Expect = 3e-12 Identities = 41/117 (35%), Positives = 58/117 (49%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L++EDN M ++GFE HDG G E DLI++D+ LP MDG Sbjct: 4 LMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVTIC 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+++ E P+I LTA SD+ G DDY TKP L+++I ++ R Sbjct: 64 RKIR---ETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRR 117
>YCF27_GUITH (O78428) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 254 Score = 70.9 bits (172), Expect = 3e-12 Identities = 37/117 (31%), Positives = 65/117 (55%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D +L RL+ G+ VV A DG ++ +E PD++++D+ +P +DG+ Sbjct: 18 LIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYGVC 77 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 ++++ D ++ P+I LTA +DR + G DDY KP L ++I +L R Sbjct: 78 QEIRKDSDV---PIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRR 131
>YCF27_CYAPA (P48259) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 239 Score = 70.5 bits (171), Expect = 3e-12 Identities = 39/117 (33%), Positives = 65/117 (55%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D +L RL+ G+EVV A DG + + E P+L+++D+ +P +DG+ Sbjct: 9 LVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLEHPNLVVLDVMMPKLDGYGVC 68 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 ++L+ + ++ P+I LTA +DR + G DDY KP L ++I LL R Sbjct: 69 QELRKESDI---PIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRR 122
>PHOB_SHIFL (P45607) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 70.1 bits (170), Expect = 4e-12 Identities = 40/117 (34%), Positives = 60/117 (51%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED +M+ L + GF+ V A D + V+ PDLIL+D LP G + Sbjct: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFI 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 + LK + + PV+ LTA DR + + G DDY TKP L+++I ++ R Sbjct: 66 KHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>PHOB_SHIDY (P45606) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 70.1 bits (170), Expect = 4e-12 Identities = 40/117 (34%), Positives = 60/117 (51%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED +M+ L + GF+ V A D + V+ PDLIL+D LP G + Sbjct: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFI 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 + LK + + PV+ LTA DR + + G DDY TKP L+++I ++ R Sbjct: 66 KHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>PHOB_ECOLI (P0AFJ5) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 70.1 bits (170), Expect = 4e-12 Identities = 40/117 (34%), Positives = 60/117 (51%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED +M+ L + GF+ V A D + V+ PDLIL+D LP G + Sbjct: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFI 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 + LK + + PV+ LTA DR + + G DDY TKP L+++I ++ R Sbjct: 66 KHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>PHOB_ECO57 (P0AFJ6) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 70.1 bits (170), Expect = 4e-12 Identities = 40/117 (34%), Positives = 60/117 (51%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED +M+ L + GF+ V A D + V+ PDLIL+D LP G + Sbjct: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFI 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 + LK + + PV+ LTA DR + + G DDY TKP L+++I ++ R Sbjct: 66 KHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>PHOB_KLEPN (P45605) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 69.7 bits (169), Expect = 6e-12 Identities = 40/117 (34%), Positives = 60/117 (51%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED +M+ L + GF+ V A D + V+ PDLIL+D LP G + Sbjct: 6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQFI 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 + LK + + PV+ LTA DR + + G DDY TKP L+++I ++ R Sbjct: 66 KLLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122
>YCF27_PORPU (P51358) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 243 Score = 69.7 bits (169), Expect = 6e-12 Identities = 38/117 (32%), Positives = 64/117 (54%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D +L RLT G+EV+ A +G + R+E P L+++D+ +P +DG+ Sbjct: 9 LVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYGVC 68 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 ++L+ + ++ P+I LTA DR + G DDY KP L ++I +L R Sbjct: 69 QELRKESDV---PIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122
>MCS4_SCHPO (P87323) Response regulator mcs4 (Mitotic catastrophe suppressor 4)| Length = 522 Score = 68.9 bits (167), Expect = 1e-11 Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 26/139 (18%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VEDN N +L + ++ +A DG ++ +++ LILMD+ LP M G E T Sbjct: 365 LIVEDNIINQKILETFMKKRNISSEVAKDGLEALEKWKKKSFHLILMDIQLPTMSGIEVT 424 Query: 399 RQLKADPELQ------------------------QTPVI--ALTAHAMASDREKAIAAGC 298 ++++ L Q+PVI ALTA ++ +DR +A+AAGC Sbjct: 425 QEIRRLERLNAIGVGAPKLTQPIPEKDQLNENKFQSPVIIVALTASSLMADRNEALAAGC 484 Query: 297 DDYDTKPIELPRLLSKIAQ 241 +D+ TKP+ L L KI + Sbjct: 485 NDFLTKPVSLVWLEKKITE 503
>CREB_ECOLI (P08368) Transcriptional regulatory protein creB| Length = 229 Score = 68.9 bits (167), Expect = 1e-11 Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Frame = -2 Query: 576 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 397 LVED + D L L ++GF V + G +D AR++ PD++++D+ LP + G+E R Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFELCR 67 Query: 396 QLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 QL A P L PV+ LTA + DR + G DDY KP + +++ LL R Sbjct: 68 QLLALHPAL---PVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>YCF29_PORPU (P51343) Probable transcriptional regulator ycf29| Length = 209 Score = 68.6 bits (166), Expect = 1e-11 Identities = 40/117 (34%), Positives = 63/117 (53%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 +LVE++ + L +GF V +A +G A + + DLI+ D+ +P++DG+E Sbjct: 6 MLVENDTVLSKAIQEYLIDQGFNVDIALNGLEAFQLANKYKFDLIISDIIMPIIDGYELL 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 +L+ +L + PVI LTA M DR K GC Y +KP + L+S I L+ R Sbjct: 66 EKLRKIDKLAKIPVIFLTAKGMTKDRIKGYNMGCYGYLSKPFDPEELVSLIKNLIYR 122
>MTRA_MYCTU (P0A5Z4) DNA-binding response regulator mtrA| Length = 225 Score = 68.2 bits (165), Expect = 2e-11 Identities = 38/117 (32%), Positives = 63/117 (53%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ +ML+ L +GF+ + DG + R +PDL+L+D+ LP M+G + Sbjct: 6 LVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVC 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R L+AD P++ LTA D + +G DDY KP + L++++ L R Sbjct: 66 RVLRAD---SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 119
>MTRA_MYCPA (Q93CB8) DNA-binding response regulator mtrA| Length = 225 Score = 68.2 bits (165), Expect = 2e-11 Identities = 38/117 (32%), Positives = 63/117 (53%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ +ML+ L +GF+ + DG + R +PDL+L+D+ LP M+G + Sbjct: 6 LVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVC 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R L+AD P++ LTA D + +G DDY KP + L++++ L R Sbjct: 66 RVLRAD---SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 119
>MTRA_MYCLE (Q9CCJ2) DNA-binding response regulator mtrA| Length = 225 Score = 68.2 bits (165), Expect = 2e-11 Identities = 38/117 (32%), Positives = 63/117 (53%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ +ML+ L +GF+ + DG + R +PDL+L+D+ LP M+G + Sbjct: 6 LVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVC 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R L+AD P++ LTA D + +G DDY KP + L++++ L R Sbjct: 66 RVLRAD---SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 119
>MTRA_MYCBO (P0A5Z5) DNA-binding response regulator mtrA| Length = 225 Score = 68.2 bits (165), Expect = 2e-11 Identities = 38/117 (32%), Positives = 63/117 (53%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ +ML+ L +GF+ + DG + R +PDL+L+D+ LP M+G + Sbjct: 6 LVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVC 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R L+AD P++ LTA D + +G DDY KP + L++++ L R Sbjct: 66 RVLRAD---SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 119
>YFHA_ECOLI (P0AFU4) Hypothetical protein yfhA (ORF-2)| Length = 444 Score = 67.8 bits (164), Expect = 2e-11 Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLV+D+ +L RLT +G+ VV A GA G+ RE+ DL++ D+ + MDG + Sbjct: 9 LLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLF 68 Query: 399 RQL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 ++ K P + PVI LTAH D A G + TKP++ L I LE+ Sbjct: 69 AEIQKVQPGM---PVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123
>YFHA_ECO57 (P0AFU5) Hypothetical protein yfhA| Length = 444 Score = 67.8 bits (164), Expect = 2e-11 Identities = 42/118 (35%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLV+D+ +L RLT +G+ VV A GA G+ RE+ DL++ D+ + MDG + Sbjct: 9 LLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQLF 68 Query: 399 RQL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 ++ K P + PVI LTAH D A G + TKP++ L I LE+ Sbjct: 69 AEIQKVQPGM---PVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQ 123
>ATOC_ECOLI (Q06065) Acetoacetate metabolism regulatory protein atoC| (Ornithine/arginine decarboxylase inhibitor) (Ornithine decarboxylase antizyme) Length = 461 Score = 67.8 bits (164), Expect = 2e-11 Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 1/124 (0%) Frame = -2 Query: 579 LLVEDNEDNWD-MLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 +L+ D+EDN MLS +GFE A++G + PD++LMD+ +P MDG +A Sbjct: 7 ILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKA 66 Query: 402 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*S 223 +++++ +TPVI +TA+A +A+ G DY KP +L L + + L+ S Sbjct: 67 LKEMRSHE--TRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124 Query: 222 HRRE 211 ++E Sbjct: 125 MKKE 128
>EVGS_ECOLI (P30855) Sensor protein evgS precursor (EC 2.7.13.3)| Length = 1197 Score = 67.4 bits (163), Expect = 3e-11 Identities = 38/114 (33%), Positives = 67/114 (58%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+ +D+ N +L R+L G++V A DG + + DL++ D+++P MDG+E T Sbjct: 962 LIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELT 1021 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 238 R+L+ + P+ LTA+A A++REK ++ G + KP+ L L + ++QL Sbjct: 1022 RKLR--EQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQL 1073
>MAK1_SCHPO (Q9P7Q7) Peroxide stress-activated histidine kinase mak1 (EC| 2.7.13.3) (Mcs4-associated kinase 1) (His-Asp phosphorelay kinase phk3) Length = 1639 Score = 67.4 bits (163), Expect = 3e-11 Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 6/121 (4%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPD---LILMDMSLPVMDGW 409 LL EDN N ++SR L R G + + DG V+ +RE+P+ LILMD+ +PVMDG+ Sbjct: 1509 LLAEDNIINIKVISRYLERIGVKFKVTMDGLQCVEEWKREKPNFYSLILMDLQMPVMDGY 1568 Query: 408 EA---TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 238 +A R+ + + + + P++AL+A+A+ +G D Y KPI L L I+ + Sbjct: 1569 QACNEIRKYELENDYPKVPIVALSANALPHVVLSCKDSGFDSYLAKPITLQHLSLIISGI 1628 Query: 237 L 235 L Sbjct: 1629 L 1629
>YCF27_GALSU (P28257) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 255 Score = 66.2 bits (160), Expect = 6e-11 Identities = 35/117 (29%), Positives = 65/117 (55%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+ +D +L RL+ G+EV+ A DG + + +E P+L+++D+ +P +DG+ Sbjct: 11 LIADDESSIRRILETRLSIIGYEVLTAPDGRSALFLFHKEHPNLVVLDVMMPKIDGYGVC 70 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 ++++ + ++ P+I LTA +DR + G DDY KP L ++I +L R Sbjct: 71 QEIRKESDI---PIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRR 124
>QSEB_HAEIN (P45337) Transcriptional regulatory protein qseB| Length = 221 Score = 65.5 bits (158), Expect = 1e-10 Identities = 38/117 (32%), Positives = 62/117 (52%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LL+ED+ + L LT+ GF V DG G+ D +++D++LP +DG E Sbjct: 4 LLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEVL 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 +Q +++ Q PV+ LTA +R K + +G DDY KP L + +++ L+ R Sbjct: 64 QQWRSNH--QDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRR 118
>RCSC_SALTI (Q56128) Sensor protein rcsC (EC 2.7.13.3) (Capsular synthesis| regulator component C) Length = 948 Score = 65.5 bits (158), Expect = 1e-10 Identities = 35/118 (29%), Positives = 71/118 (60%), Gaps = 1/118 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ N +L+ +L G++ A+DG ++ + D++L D+++P MDG+ T Sbjct: 828 LVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRLT 887 Query: 399 RQLKADPELQQT-PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 ++++ +L T PV+ +TA+A+A ++++ + +G D +KP+ L L +A ER Sbjct: 888 QRIR---QLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDALKQTLAVYAER 942
>DLTR_STRA5 (P0A4I0) Transcriptional regulatory protein dltR| Length = 224 Score = 65.1 bits (157), Expect = 1e-10 Identities = 38/111 (34%), Positives = 59/111 (53%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED + + + L KG+ V LA DG G++ DL+L+D+ LP G Sbjct: 4 LVVEDEKSIAEAIQALLADKGYSVDLAFDGDDGLEYILTGLYDLVLLDIMLPKRSGLSVL 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 247 ++++ +TP+I LTA + D+ + G DDY TKP E LL++I Sbjct: 64 KRVREAG--LETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARI 112
>DLTR_STRA3 (P0A4H9) Transcriptional regulatory protein dltR| Length = 224 Score = 65.1 bits (157), Expect = 1e-10 Identities = 38/111 (34%), Positives = 59/111 (53%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED + + + L KG+ V LA DG G++ DL+L+D+ LP G Sbjct: 4 LVVEDEKSIAEAIQALLADKGYSVDLAFDGDDGLEYILTGLYDLVLLDIMLPKRSGLSVL 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 247 ++++ +TP+I LTA + D+ + G DDY TKP E LL++I Sbjct: 64 KRVREAG--LETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARI 112
>EVGS_ECO57 (P58402) Sensor protein evgS precursor (EC 2.7.13.3)| Length = 1197 Score = 64.7 bits (156), Expect = 2e-10 Identities = 37/114 (32%), Positives = 66/114 (57%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+ +D+ N +L R+L G++V A DG + + DL++ D+++P +DG+E T Sbjct: 962 LIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNVDGFELT 1021 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 238 R+L+ + P+ LTA+A A++REK + G + KP+ L L + ++QL Sbjct: 1022 RKLR--EQNSSLPIWGLTANAQANEREKGLNCGMNLCLFKPLTLDVLKTHLSQL 1073
>CHVI_AGRTU (Q07783) Transcriptional regulatory protein chvI| Length = 241 Score = 64.7 bits (156), Expect = 2e-10 Identities = 40/120 (33%), Positives = 61/120 (50%) Frame = -2 Query: 576 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 397 LV+D+ + +S L R+G+ V DGA+ VD P L + D+ +P MDG E R Sbjct: 6 LVDDDRNILTSVSIALEREGYRVETYTDGASAVDGLIARPPQLAIFDIKMPRMDGMELLR 65 Query: 396 QLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHR 217 +L+ ++ PVI LT+ D + G DD+ TKP L+ ++ +L R S R Sbjct: 66 RLRQKSDI---PVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRASSR 122
>RCSC_SALTY (P58662) Sensor protein rcsC (EC 2.7.13.3) (Capsular synthesis| regulator component C) Length = 948 Score = 64.7 bits (156), Expect = 2e-10 Identities = 35/118 (29%), Positives = 71/118 (60%), Gaps = 1/118 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ N +L+ +L G++ A+DG ++ + D++L D+++P MDG+ T Sbjct: 828 LVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRLT 887 Query: 399 RQLKADPELQQT-PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 ++++ +L T PV+ +TA+A+A ++++ + +G D +KP+ L L +A ER Sbjct: 888 QRIR---QLGLTLPVVGVTANALAEEKQRCLESGMDSCLSKPVTLDVLKQTLAVYAER 942
>YCBL_BACSU (P42244) Hypothetical sensory transduction protein ycbL| Length = 226 Score = 64.3 bits (155), Expect = 2e-10 Identities = 36/117 (30%), Positives = 62/117 (52%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 +LVED+ +M+ LT++GF +V A DG G+ ++ DL+L+D+ LP ++G + Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDF- 59 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 LK E PV+ ++A D+ + G DDY KP + L +++ + R Sbjct: 60 --LKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRR 114
>SRRA_STAAW (Q7A0U4) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 64.3 bits (155), Expect = 2e-10 Identities = 38/117 (32%), Positives = 61/117 (52%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 6 LIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQVA 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 66 TKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAU (Q9L524) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 64.3 bits (155), Expect = 2e-10 Identities = 38/117 (32%), Positives = 61/117 (52%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 6 LIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQVA 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 66 TKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAS (Q6G972) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 64.3 bits (155), Expect = 2e-10 Identities = 38/117 (32%), Positives = 61/117 (52%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 6 LIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQVA 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 66 TKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAR (Q6GGK6) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 64.3 bits (155), Expect = 2e-10 Identities = 38/117 (32%), Positives = 61/117 (52%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 6 LIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQVA 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 66 TKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAN (Q7A5H6) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 64.3 bits (155), Expect = 2e-10 Identities = 38/117 (32%), Positives = 61/117 (52%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 6 LIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQVA 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 66 TKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAM (Q7A2R6) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 64.3 bits (155), Expect = 2e-10 Identities = 38/117 (32%), Positives = 61/117 (52%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 6 LIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQVA 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 66 TKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>SRRA_STAAC (Q5HFT0) Transcriptional regulatory protein srrA (Staphylococcal| respiratory response protein A) Length = 241 Score = 64.3 bits (155), Expect = 2e-10 Identities = 38/117 (32%), Positives = 61/117 (52%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D + +L L R+ FE+ A +G + A IL+D+ LP MDG + Sbjct: 6 LIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQVA 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 +L+ E +QTP+I LTA ++R + +G DDY KP ++ ++ LL R Sbjct: 66 TKLR---EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>RPRY_BACFR (Q9AE24) Transcriptional regulatory protein rprY| Length = 236 Score = 64.3 bits (155), Expect = 2e-10 Identities = 38/117 (32%), Positives = 59/117 (50%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LL ED+E+ +L L KG+ L DG AG + + DL + D+ +P DG+ Sbjct: 11 LLCEDDENLGMLLREYLQAKGYSAELYPDGEAGFKAFLKNKYDLCVFDVMMPKKDGFTLA 70 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 ++++A + P+I LTA + D + G DDY TKP + L +I +L R Sbjct: 71 QEVRA--ANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAILRR 125
>CTRA_CAUCR (Q45994) Cell cycle transcriptional regulator ctrA (Response| regulator sokA) Length = 231 Score = 63.9 bits (154), Expect = 3e-10 Identities = 37/117 (31%), Positives = 58/117 (49%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LL+ED+ + L +GF V G GVD + DLIL+D++LP M G + Sbjct: 4 LLIEDDSATAQTIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLNLPDMSGIDVL 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R L+ TP++ L+ + + K A G DDY TKP ++++I ++ R Sbjct: 64 RTLRV--AKINTPIMILSGSSEIDTKVKTFAGGADDYMTKPFHKDEMIARIHAVVRR 118
>PHOB_PSEAE (P23620) Phosphate regulon transcriptional regulatory protein phoB| Length = 229 Score = 63.2 bits (152), Expect = 5e-10 Identities = 37/117 (31%), Positives = 58/117 (49%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D +M++ L G+E + A + +PDLIL+D LP G E Sbjct: 7 LIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGIELA 66 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+LK D P+I LTA ++ + + G DDY TKP L++++ +L R Sbjct: 67 RRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123
>CYAB_STIAU (P40138) Adenylate cyclase 2 (EC 4.6.1.1) (ATP pyrophosphate-lyase| 2) (Adenylyl cyclase 2) (AC2) Length = 352 Score = 63.2 bits (152), Expect = 5e-10 Identities = 33/97 (34%), Positives = 54/97 (55%) Frame = -2 Query: 519 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAH 340 G+EV+ D ++ + QP ++L D+ +P +DG E +LK P +Q PVI LTA+ Sbjct: 31 GYEVMCFQDPYEALEQVGKVQPAIVLSDLDMPGIDGLELCWRLKESPS-RQVPVIILTAN 89 Query: 339 AMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 ++R K + AG DDY K + L ++I ++ R Sbjct: 90 DSEAERVKGLRAGADDYVNKSASMAELSARIESVMRR 126
>RCSC_ECOLI (P14376) Sensor kinase protein rcsC (EC 2.7.13.3) (Capsular synthesis| regulator component C) Length = 949 Score = 63.2 bits (152), Expect = 5e-10 Identities = 34/118 (28%), Positives = 70/118 (59%), Gaps = 1/118 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ N +L+ +L G++ A+DG ++ + D++L D+++P MDG+ T Sbjct: 828 LVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLT 887 Query: 399 RQLKADPELQQT-PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 ++++ +L T PVI +TA+A+A ++++ + +G D +KP+ L + + ER Sbjct: 888 QRIR---QLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAER 942
>SLN1_YEAST (P39928) Osmolarity two-component system protein SLN1 (EC 2.7.13.3)| Length = 1220 Score = 62.8 bits (151), Expect = 7e-10 Identities = 38/113 (33%), Positives = 68/113 (60%), Gaps = 6/113 (5%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVD-----TARREQPDLILMDMSLPVM 418 L+VEDN N +++ R L +G E + LA DG D T++ E ++I MD+ +P + Sbjct: 1091 LVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKV 1150 Query: 417 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 259 DG +T+ ++ D +P++ALTA A S+ ++ + +G + + +KPI+ P+L Sbjct: 1151 DGLLSTKMIRRDLGYT-SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKL 1202
>KDPE_ECOLI (P21866) KDP operon transcriptional regulatory protein kdpE| Length = 225 Score = 62.8 bits (151), Expect = 7e-10 Identities = 43/124 (34%), Positives = 61/124 (49%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED + L L G V A G+ A +PDLI++D+ LP DG E Sbjct: 5 LIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFI 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SH 220 R L+ + PVI L+A + SD+ A+ AG DDY +KP + L +++ L R S Sbjct: 65 RDLR---QWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSA 121 Query: 219 RREP 208 P Sbjct: 122 TTAP 125
>SSK1_YEAST (Q07084) Osomolarity two-component system protein SSK1| Length = 712 Score = 62.4 bits (150), Expect = 9e-10 Identities = 45/139 (32%), Positives = 62/139 (44%), Gaps = 26/139 (18%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VEDN N +L L + LA +G V+ + LI MD+ LPV+ G EA Sbjct: 507 LIVEDNVINQAILGSFLRKHKISYKLAKNGQEAVNIWKEGGLHLIFMDLQLPVLSGIEAA 566 Query: 399 RQLK------------------------ADPELQQTPVI--ALTAHAMASDREKAIAAGC 298 +Q++ Q PVI ALTA D+ KA+ +GC Sbjct: 567 KQIRDFEKQNGIGIQKSLNNSHSNLEKGTSKRFSQAPVIIVALTASNSQMDKRKALLSGC 626 Query: 297 DDYDTKPIELPRLLSKIAQ 241 +DY TKP+ L L KI + Sbjct: 627 NDYLTKPVNLHWLSKKITE 645
>ARCB_SHIFL (P0AEC4) Aerobic respiration control sensor protein arcB (EC| 2.7.13.3) Length = 778 Score = 62.0 bits (149), Expect = 1e-09 Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 1/112 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLVED E N + L + G V +A G A ++ + + DL+L+D+ LP M G + + Sbjct: 529 LLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDIS 588 Query: 399 RQL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 247 R+L K P P++ALTA+ + D+++ + AG DD +KP+ +P L + I Sbjct: 589 RELTKRYPREDLPPLVALTANVL-KDKQEYLNAGMDDVLSKPLSVPALTAMI 639
>ARCB_ECOLI (P0AEC3) Aerobic respiration control sensor protein arcB (EC| 2.7.13.3) Length = 778 Score = 62.0 bits (149), Expect = 1e-09 Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 1/112 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLVED E N + L + G V +A G A ++ + + DL+L+D+ LP M G + + Sbjct: 529 LLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDIS 588 Query: 399 RQL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 247 R+L K P P++ALTA+ + D+++ + AG DD +KP+ +P L + I Sbjct: 589 RELTKRYPREDLPPLVALTANVL-KDKQEYLNAGMDDVLSKPLSVPALTAMI 639
>ARCB_ECO57 (P58363) Aerobic respiration control sensor protein arcB (EC| 2.7.13.3) Length = 778 Score = 62.0 bits (149), Expect = 1e-09 Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 1/112 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLVED E N + L + G V +A G A ++ + + DL+L+D+ LP M G + + Sbjct: 529 LLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDIS 588 Query: 399 RQL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 247 R+L K P P++ALTA+ + D+++ + AG DD +KP+ +P L + I Sbjct: 589 RELTKRYPREDLPPLVALTANVL-KDKQEYLNAGMDDVLSKPLSVPALTAMI 639
>RCAC_FREDI (Q01473) Protein rcaC| Length = 651 Score = 62.0 bits (149), Expect = 1e-09 Identities = 40/126 (31%), Positives = 67/126 (53%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLVED++ +L++ LT + V + DG G + DLI++D+ LP +DG Sbjct: 4 LLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGISLC 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SH 220 ++ +A + P++ LTA + + + + AG DDY KP + L+++I LL R S+ Sbjct: 64 KRFRA--QGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRGSN 121 Query: 219 RREPWL 202 P L Sbjct: 122 NPFPLL 127 Score = 60.8 bits (146), Expect = 3e-09 Identities = 33/117 (28%), Positives = 65/117 (55%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 ++++D++D L L GF+V D + PD +++D+++P ++G+E Sbjct: 529 MILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFELC 588 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 + L++DP Q+ PV+ L+ + + +A A G DDY KP++ L ++I + L+R Sbjct: 589 QLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRILRRLQR 645
>TCSA_EMENI (Q9P896) Two-component system protein A (EC 2.7.13.3)| Length = 719 Score = 61.6 bits (148), Expect = 2e-09 Identities = 49/115 (42%), Positives = 66/115 (57%), Gaps = 7/115 (6%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRK-GFEVVLAHDGA-AGVDTAR--REQP---DLILMDMSLPV 421 LLVEDN N T + GF+ + DGA G + R R++P D+ILMD+S+PV Sbjct: 562 LLVEDNIVNHTRYVEAPTYQFGFQRI---DGAWNGAEAVRMVRQKPLSYDIILMDVSMPV 618 Query: 420 MDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLL 256 +DG AT Q++ D L P+IA+T +AM D E IA G DD KP+ +LL Sbjct: 619 LDGLAATEQIR-DMGLTM-PIIAITGNAMKGDAETYIAQGMDDCICKPVHRDQLL 671
>LUXQ_VIBVY (Q7MD16) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 857 Score = 61.2 bits (147), Expect = 2e-09 Identities = 38/103 (36%), Positives = 55/103 (53%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLVEDN N +L + V DG ++ + DLILMD LP M G EAT Sbjct: 737 LLVEDNHTNAFILKAFCQKYQMSVEWVQDGTQALEKLKEHAFDLILMDNQLPKMGGIEAT 796 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 271 R+++ +L TP+ A TA A S +++ ++AG + KPI+ Sbjct: 797 REIRETLKL-GTPIYACTADAQESTKQEFLSAGANRVIVKPIK 838
>LUXQ_VIBVU (Q8D5Z6) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 857 Score = 61.2 bits (147), Expect = 2e-09 Identities = 38/103 (36%), Positives = 55/103 (53%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLVEDN N +L + V DG ++ + DLILMD LP M G EAT Sbjct: 737 LLVEDNHTNAFILKAFCQKYQMSVEWVQDGTQALEKLKEHAFDLILMDNQLPKMGGIEAT 796 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 271 R+++ +L TP+ A TA A S +++ ++AG + KPI+ Sbjct: 797 REIRETLKL-GTPIYACTADAQESTKQEFLSAGANRVIVKPIK 838
>RESD_BACSU (P35163) Transcriptional regulatory protein resD| Length = 240 Score = 60.8 bits (146), Expect = 3e-09 Identities = 37/117 (31%), Positives = 59/117 (50%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D +L L R+ + + A +G + DLIL+D+ +P DG E Sbjct: 10 LVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIEVC 69 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 RQ++ E + TP+I LTA ++R + AG DDY KP ++ ++ LL R Sbjct: 70 RQIR---EKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123
>CHVI_RHIME (P50350) Transcriptional regulatory protein chvI| Length = 240 Score = 60.8 bits (146), Expect = 3e-09 Identities = 37/120 (30%), Positives = 62/120 (51%) Frame = -2 Query: 576 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 397 LV+D+ + +S L +G++V DGA+ ++ P L + D+ +P MDG E R Sbjct: 6 LVDDDRNILTSVSIALEAEGYKVETYTDGASALEGLLARPPQLAIFDIKMPRMDGMELLR 65 Query: 396 QLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHR 217 +L+ +L PVI LT+ D + G DD+ TKP L+ ++ +L R ++R Sbjct: 66 RLRQKSDL---PVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRAANR 122
>SPHR_SYNP7 (P39663) Alkaline phosphatase synthesis transcriptional regulatory| protein sphR Length = 257 Score = 60.8 bits (146), Expect = 3e-09 Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 9/126 (7%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARR---------EQPDLILMDMSL 427 L+VED DM++ L ++GF V +A DG ++ R E PDL+++D+ L Sbjct: 27 LVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDLML 86 Query: 426 PVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 247 P ++G + R L+ P++ L+A +DR + G DDY TKP L+++ Sbjct: 87 PAVNGLDFCRLLRRQGVT--VPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 246 AQLLER 229 LL R Sbjct: 145 RALLRR 150
>TORR_ECOLI (P38684) TorCAD operon transcriptional regulatory protein torR| Length = 230 Score = 60.5 bits (145), Expect = 3e-09 Identities = 38/117 (32%), Positives = 60/117 (51%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 ++VED L T++G+ V + GA + + + DLIL+D++LP +G T Sbjct: 6 VIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLT 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R L+ E +I +T + DR + G DDY TKP+EL L+ ++ LL R Sbjct: 66 RALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119
>TORR_ECO57 (P58357) TorCAD operon transcriptional regulatory protein torR| Length = 230 Score = 60.1 bits (144), Expect = 5e-09 Identities = 38/117 (32%), Positives = 60/117 (51%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 ++VED L T++G+ V + GA + + + DLIL+D++LP +G T Sbjct: 6 VIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLT 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R L+ E +I +T + DR + G DDY TKP+EL L+ ++ LL R Sbjct: 66 RALR---ERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119
>CHEY_BACSU (P24072) Chemotaxis protein cheY homolog| Length = 119 Score = 59.7 bits (143), Expect = 6e-09 Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 L+V+D M+ L + GFEVV A +GA V+ + PDL+ MD+++P MDG A Sbjct: 5 LIVDDAAFMRMMIKDILVKNGFEVVAEAENGAQAVEKYKEHSPDLVTMDITMPEMDGITA 64 Query: 402 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 235 +++K Q +I +A S AI AG D+ KP + R+L I + L Sbjct: 65 LKEIKQID--AQARIIMCSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTL 118
>YCF27_CYACA (Q9TLQ4) Probable transcriptional regulator ycf27 (OmpR-like| protein) Length = 249 Score = 59.7 bits (143), Expect = 6e-09 Identities = 34/117 (29%), Positives = 60/117 (51%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D + +L RLT G+ V A +G + DLI++D+ +P +DG+ Sbjct: 15 LIVDDENNIRKILQTRLTLLGYSVSTACNGEEALKIFTTHSIDLIILDVMMPKLDGYGVC 74 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 ++++ + ++ P+I LTA D+ + G DDY KP L ++I +L R Sbjct: 75 QEIRKESDI---PIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELEARIQSILRR 128
>PHOB_HAEIN (P45189) Phosphate regulon transcriptional regulatory protein phoB| Length = 231 Score = 59.7 bits (143), Expect = 6e-09 Identities = 38/117 (32%), Positives = 60/117 (51%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED +M++ L++K ++V+ A D ++ + E P LIL+D LP G + Sbjct: 6 LIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIK-ENPKLILLDWMLPGRSGIQFI 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 + +K P+I LTA + D + AG DDY TKP LL++I + R Sbjct: 65 QYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRR 121
>QSEB_SALTY (P66795) Transcriptional regulatory protein qseB| Length = 219 Score = 59.7 bits (143), Expect = 6e-09 Identities = 36/117 (30%), Positives = 62/117 (52%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLVED+ D + L++ GF V +G G + D +++D++LP MDG + Sbjct: 4 LLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDIL 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+ + + +Q PV+ LTA ++R + + G DDY KP L + +++ L+ R Sbjct: 64 REWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRR 118
>QSEB_SALTI (P66796) Transcriptional regulatory protein qseB| Length = 219 Score = 59.7 bits (143), Expect = 6e-09 Identities = 36/117 (30%), Positives = 62/117 (52%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLVED+ D + L++ GF V +G G + D +++D++LP MDG + Sbjct: 4 LLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDIL 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+ + + +Q PV+ LTA ++R + + G DDY KP L + +++ L+ R Sbjct: 64 REWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRR 118
>GTCR_ANEMI (Q44929) Response regulator gtcR| Length = 242 Score = 59.3 bits (142), Expect = 8e-09 Identities = 34/124 (27%), Positives = 65/124 (52%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+ +D + ++L L R+ + ++ A+DG + R+ DL ++D+ +P +DG++ Sbjct: 6 LIADDEPEIIELLKLFLERESYRIIEAYDGEQAWNYIRQHPVDLAIIDIMMPALDGFQLI 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SH 220 ++L + +L PVI L+A SD+ + G DD+ +KP +++I L R Sbjct: 66 KRLTNEYKL---PVIILSAKNRDSDKILGLGLGADDFISKPFNPLEAVARIQAQLRRAFE 122 Query: 219 RREP 208 EP Sbjct: 123 FNEP 126
>SKN7_YEAST (P38889) Transcription factor SKN7 (Peroxide sensitivity protein| POS9) Length = 622 Score = 58.5 bits (140), Expect = 1e-08 Identities = 40/128 (31%), Positives = 66/128 (51%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLVED+ + + S+ L + G V + DG + + T + + DL+LMD+ +P +DG AT Sbjct: 380 LLVEDDAVSIQLCSKFLRKYGCTVQVVSDGLSAISTLEKYRYDLVLMDIVMPNLDGATAT 439 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SH 220 +++ +TP+IA+T + M D + G +D KP L S + + L+ Sbjct: 440 SIVRSFD--NETPIIAMTGNIMNQDLITYLQHGMNDILAKPFTRDDLHSILIRYLKDRIP 497 Query: 219 RREPWLPP 196 E LPP Sbjct: 498 LCEQQLPP 505
>SP0A_CLODI (P52938) Stage 0 sporulation protein A homolog| Length = 274 Score = 58.5 bits (140), Expect = 1e-08 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 2/157 (1%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVL--AHDGAAGVDTARREQPDLILMDMSLPVMDGWE 406 +L +DN+D +L L+ + +L A DG +D ++ QPDL+++D+ +P +DG Sbjct: 12 VLADDNKDFCQVLKEYLSNEDDIDILGIAKDGIEALDLVKKTQPDLLILDVIMPHLDGLG 71 Query: 405 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER* 226 +L + +I L+A + AI G D Y KP + +++I +L+ Sbjct: 72 VIEKLNTMDIPKMPKIIVLSAVGQDKITQSAINLGADYYIVKPFDFVVFINRIRELVSNR 131 Query: 225 SHRREPWLPP*PSTAMKLRRQFLLFGVGTTFTAIAAI 115 + EP P P ++ R + VG T I I Sbjct: 132 VTQVEP--KPRPVQETQMTRSDFVKNVGNIETEITNI 166
>QSEB_ECOLI (P52076) Transcriptional regulatory protein qseB| Length = 219 Score = 58.5 bits (140), Expect = 1e-08 Identities = 35/117 (29%), Positives = 60/117 (51%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LL+ED+ D + L++ GF V G G + D +++D++LP MDG + Sbjct: 4 LLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDIL 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+ + Q+ PV+ LTA ++R + + G DDY KP L + +++ L+ R Sbjct: 64 REWREKG--QREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118
>PETR_RHOCA (P31079) Protein petR| Length = 245 Score = 58.2 bits (139), Expect = 2e-08 Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAG--VDTARREQPDLILMDMSLPVMDGWE 406 L+V+D+E +L + L R GF V D A + T + +LI++D+ +P DG Sbjct: 10 LIVDDDERIRGLLQKFLIRNGFLVTAGRDAAHARRLFTLSGLEFNLIVLDVMMPGEDGLS 69 Query: 405 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDY--DTKPIELPRLLSKIAQLLE 232 TR L+ TP++ LTA +R + + AG DDY KP E LL +I +L Sbjct: 70 LTRDLRTK---MATPILLLTARGETRERIEGLEAGADDYLFTPKPFEPKELLLRINAILR 126 Query: 231 R 229 R Sbjct: 127 R 127
>QSEB_ECO57 (Q8XBS3) Transcriptional regulatory protein qseB| Length = 219 Score = 58.2 bits (139), Expect = 2e-08 Identities = 35/117 (29%), Positives = 59/117 (50%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LL+ED+ D + L++ GF V G G + D +++D++LP MDG + Sbjct: 4 LLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDIL 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+ + Q+ PV+ LTA +R + + G DDY KP L + +++ L+ R Sbjct: 64 REWREKG--QREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118
>ZRAR_KLEOX (Q9APD9) Transcriptional regulatory protein zraR| Length = 443 Score = 57.8 bits (138), Expect = 2e-08 Identities = 33/116 (28%), Positives = 65/116 (56%), Gaps = 1/116 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ + +L L G+ V LA++G ++ R + DL+L D+ + MDG E Sbjct: 9 LVVDDDISHCTILQALLRGWGYRVALANNGLQALEKVREKVFDLVLCDIRMAEMDGIETL 68 Query: 399 RQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 235 +++K +P + PV+ +TA++ +A+ +G DY KP++ +L +++ L Sbjct: 69 KEIKTFNPSI---PVLIMTAYSSVDTAVEALKSGALDYLIKPLDFDKLQLTLSEAL 121
>CUTR_STRLI (P0A4I2) Transcriptional regulatory protein cutR (Defective melC1| suppressor protein) Length = 217 Score = 57.8 bits (138), Expect = 2e-08 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED + D ++ L R+ V + +DGAA ++ D++++D LP++ G + Sbjct: 4 LVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGDDVC 63 Query: 399 RQLKADPEL-QQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R++ EL T V+ LTA SDR + + G DDY KP L++++ L R Sbjct: 64 RKI---VELGMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRR 118
>CUTR_STRCO (P0A4I1) Transcriptional regulatory protein cutR (Defective melC1| suppressor protein) Length = 217 Score = 57.8 bits (138), Expect = 2e-08 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 1/118 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED + D ++ L R+ V + +DGAA ++ D++++D LP++ G + Sbjct: 4 LVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGDDVC 63 Query: 399 RQLKADPEL-QQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R++ EL T V+ LTA SDR + + G DDY KP L++++ L R Sbjct: 64 RKI---VELGMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRR 118
>VANR_ENTFA (Q47744) Regulatory protein vanRB| Length = 220 Score = 57.0 bits (136), Expect = 4e-08 Identities = 36/117 (30%), Positives = 60/117 (51%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLVED++ + + L +EV DG L+++D+ LP M+G E Sbjct: 6 LLVEDDDHICNTVRAFLAEARYEVDACTDGNEAHTKFYENTYQLVILDIMLPGMNGHELL 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+ +A + TP++ +TA + ++ +A A DDY TKP ++ LL ++ LL R Sbjct: 66 REFRAQND---TPILMMTALSDDENQIRAFDAEADDYVTKPFKMRILLKRVEALLRR 119
>ZRAR_SALTY (P25852) Transcriptional regulatory protein zraR| Length = 441 Score = 56.6 bits (135), Expect = 5e-08 Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 1/124 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ + +L L G+ V LA+ G + R + DL+L D+ + MDG Sbjct: 9 LVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIATL 68 Query: 399 RQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*S 223 +++KA +P + P++ +TA + +A+ AG DY KP++ RL + + L + Sbjct: 69 KEIKALNPAI---PILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKAL---A 122 Query: 222 HRRE 211 H RE Sbjct: 123 HTRE 126
>ZRAR_SALTI (Q8Z333) Transcriptional regulatory protein zraR| Length = 441 Score = 56.6 bits (135), Expect = 5e-08 Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 1/124 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ + +L L G+ V LA+ G + R + DL+L D+ + MDG Sbjct: 9 LVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMAEMDGIATL 68 Query: 399 RQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*S 223 +++KA +P + P++ +TA + +A+ AG DY KP++ RL + + L + Sbjct: 69 KEIKALNPAI---PILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKAL---A 122 Query: 222 HRRE 211 H RE Sbjct: 123 HTRE 126
>CPXR_HAEIN (P44895) Transcriptional regulatory protein cpxR homolog| Length = 227 Score = 56.6 bits (135), Expect = 5e-08 Identities = 35/117 (29%), Positives = 63/117 (53%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLV+D+ + ++LS L +GF+V A++G + E L+L+D+ +P ++G E Sbjct: 5 LLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLN-ESYKLVLLDVMMPKLNGIETL 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 ++++ ++ PV+ LTA DR + G DD KP L+++I +L R Sbjct: 64 KEIR---KVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRR 117
>PHOP_SALTY (P14146) Virulence transcriptional regulatory protein phoP| Length = 224 Score = 56.2 bits (134), Expect = 7e-08 Identities = 34/117 (29%), Positives = 57/117 (48%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VEDN L +L G +V A D PD+ ++D+ LP DG Sbjct: 5 LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPDEDGLSLI 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+ ++ PV+ LTA D+ + +++G DDY TKP + +++++ L+ R Sbjct: 65 RRWRSSDV--SLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRR 119
>PHOP_SALTI (Q8Z7H2) Virulence transcriptional regulatory protein phoP| Length = 224 Score = 56.2 bits (134), Expect = 7e-08 Identities = 34/117 (29%), Positives = 57/117 (48%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VEDN L +L G +V A D PD+ ++D+ LP DG Sbjct: 5 LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPDEDGLSLI 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+ ++ PV+ LTA D+ + +++G DDY TKP + +++++ L+ R Sbjct: 65 RRWRSSDV--SLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRR 119
>PHOP_SALPA (Q5PMJ1) Virulence transcriptional regulatory protein phoP| Length = 224 Score = 56.2 bits (134), Expect = 7e-08 Identities = 34/117 (29%), Positives = 57/117 (48%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VEDN L +L G +V A D PD+ ++D+ LP DG Sbjct: 5 LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGLPDEDGLSLI 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+ ++ PV+ LTA D+ + +++G DDY TKP + +++++ L+ R Sbjct: 65 RRWRSSDV--SLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRR 119
>CHEB_HALMA (Q5V0B3) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 369 Score = 56.2 bits (134), Expect = 7e-08 Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 8/123 (6%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 ++ +D+ ++S L+ G +VV A DG V +PD++ MD+ +PVM+G EA Sbjct: 8 VVADDSHFMRSVISDILSDGGIDVVAQARDGEEAVSAVIEHRPDVVTMDVEMPVMNGIEA 67 Query: 402 TRQLKADPELQQTPVIALTAHA--MASDREKAIAAGCDDYDTKP-----IELPRLLSKIA 244 T ++ A+ TPV+ L+AH A +A+ G D+ TKP +E+ RL ++ Sbjct: 68 TERIMAE---SPTPVLMLSAHTDENADVTFEALDKGAVDFFTKPGGEVSMEMSRLKDQLV 124 Query: 243 QLL 235 +++ Sbjct: 125 EMV 127
>PHOP_SHIFL (Q83RR0) Virulence transcriptional regulatory protein phoP| Length = 223 Score = 55.8 bits (133), Expect = 8e-08 Identities = 33/117 (28%), Positives = 58/117 (49%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VEDN L ++ G +V A D PD+ ++D+ LP DG Sbjct: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLI 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+ +++ P++ LTA D+ + ++AG DDY TKP + +++++ L+ R Sbjct: 64 RRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118
>PHOP_ECOL6 (Q8CXZ9) Transcriptional regulatory protein phoP| Length = 223 Score = 55.8 bits (133), Expect = 8e-08 Identities = 33/117 (28%), Positives = 58/117 (49%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VEDN L ++ G +V A D PD+ ++D+ LP DG Sbjct: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLI 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+ +++ P++ LTA D+ + ++AG DDY TKP + +++++ L+ R Sbjct: 64 RRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118
>ZRAR_ECOLI (P14375) Transcriptional regulatory protein zraR| Length = 441 Score = 55.5 bits (132), Expect = 1e-07 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ + +L L G+ V LA+ G ++ R + DL+L D+ + MDG Sbjct: 9 LVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATL 68 Query: 399 RQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 235 +++KA +P + PV+ +TA++ +A+ G DY KP++ L + + + L Sbjct: 69 KEIKALNPAI---PVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121
>YCF29_CYAPA (P48359) Probable transcriptional regulator ycf29| Length = 210 Score = 55.5 bits (132), Expect = 1e-07 Identities = 33/101 (32%), Positives = 49/101 (48%) Frame = -2 Query: 531 LTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIA 352 LT GF V + D +R++ DLI+ D+ +P M G+ QL+ + + PVI Sbjct: 21 LTEIGFHVEESTCVDQAWDILKRKKIDLIICDIIMPGMGGFNFLHQLRLNTDYCTLPVIL 80 Query: 351 LTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 LT + DR GCD Y +KP + L+ I +L R Sbjct: 81 LTTRGLTQDRIIGYKTGCDSYISKPFNIEELVVIIEGVLNR 121
>PHOP_ECOLI (P23836) Transcriptional regulatory protein phoP| Length = 223 Score = 55.5 bits (132), Expect = 1e-07 Identities = 33/117 (28%), Positives = 58/117 (49%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VEDN L ++ G +V A D PD+ ++D+ LP DG Sbjct: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLI 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+ +++ P++ LTA D+ + ++AG DDY TKP + +++++ L+ R Sbjct: 64 RRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118
>CHEB_ARCFU (O29221) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 349 Score = 55.5 bits (132), Expect = 1e-07 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 3/104 (2%) Frame = -2 Query: 531 LTRKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVI 355 LT+ G EVV A +G V+ A + +PD+I +D+++P MDG A LK E Q TPV+ Sbjct: 20 LTKAGIEVVDTAKNGREAVEKALKLKPDVITLDINMPEMDGLTA---LKLIMEKQPTPVV 76 Query: 354 ALTAHAMASDRE--KAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 L++ RE +A+ G D+ TKP LS +AQ L R Sbjct: 77 MLSSLTKEGARETLEALKIGAVDFVTKPDGALVDLSSVAQELVR 120
>BAER_ECOLI (P69228) Transcriptional regulatory protein baeR| Length = 240 Score = 55.5 bits (132), Expect = 1e-07 Identities = 35/123 (28%), Positives = 56/123 (45%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED +L L + L G + R+ PDLIL+D+ LP DG Sbjct: 14 LIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTLC 73 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SH 220 R+++ P++ +TA DR + G DDY KP +++++ +L R Sbjct: 74 REIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 219 RRE 211 +RE Sbjct: 131 QRE 133
>BAER_ECOL6 (P69229) Transcriptional regulatory protein baeR| Length = 240 Score = 55.5 bits (132), Expect = 1e-07 Identities = 35/123 (28%), Positives = 56/123 (45%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED +L L + L G + R+ PDLIL+D+ LP DG Sbjct: 14 LIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTLC 73 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SH 220 R+++ P++ +TA DR + G DDY KP +++++ +L R Sbjct: 74 REIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 219 RRE 211 +RE Sbjct: 131 QRE 133
>CIAR_STRR6 (P0A4H8) Transcriptional regulatory protein ciaR| Length = 224 Score = 55.1 bits (131), Expect = 1e-07 Identities = 33/95 (34%), Positives = 49/95 (51%) Frame = -2 Query: 513 EVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAM 334 +V+ DG G+ A DLIL+D+ LP +G++ ++L+ TPV+ +TA Sbjct: 26 DVMQVFDGEEGLYEAESGVYDLILLDLMLPEKNGFQVLKELREKGIT--TPVLIMTAKES 83 Query: 333 ASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 D+ G DDY TKP L L +I LL+R Sbjct: 84 LDDKGHGFELGADDYLTKPFYLEELKMRIQALLKR 118
>CIAR_STRPN (P0A4H7) Transcriptional regulatory protein ciaR| Length = 224 Score = 55.1 bits (131), Expect = 1e-07 Identities = 33/95 (34%), Positives = 49/95 (51%) Frame = -2 Query: 513 EVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAM 334 +V+ DG G+ A DLIL+D+ LP +G++ ++L+ TPV+ +TA Sbjct: 26 DVMQVFDGEEGLYEAESGVYDLILLDLMLPEKNGFQVLKELREKGIT--TPVLIMTAKES 83 Query: 333 ASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 D+ G DDY TKP L L +I LL+R Sbjct: 84 LDDKGHGFELGADDYLTKPFYLEELKMRIQALLKR 118
>ZRAR_ECO57 (Q8X613) Transcriptional regulatory protein zraR| Length = 441 Score = 54.7 bits (130), Expect = 2e-07 Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ + +L L G+ V LA+ G ++ R DL+L D+ + MDG Sbjct: 9 LVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRERVFDLVLCDVRMAEMDGIATL 68 Query: 399 RQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 235 +++KA +P + PV+ +TA++ +A+ G DY KP++ L + + + L Sbjct: 69 KEIKALNPAI---PVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121
>OMPR_SHIFL (P0AA21) Transcriptional regulatory protein ompR| Length = 239 Score = 54.7 bits (130), Expect = 2e-07 Identities = 37/117 (31%), Positives = 58/117 (49%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ +L R LT +GF+V + RE L+++D+ LP DG Sbjct: 8 LVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSIC 67 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 68 RRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>OMPR_SALTY (P0AA19) Transcriptional regulatory protein ompR| Length = 239 Score = 54.7 bits (130), Expect = 2e-07 Identities = 37/117 (31%), Positives = 58/117 (49%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ +L R LT +GF+V + RE L+++D+ LP DG Sbjct: 8 LVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSIC 67 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 68 RRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>OMPR_SALTI (P0AA20) Transcriptional regulatory protein ompR| Length = 239 Score = 54.7 bits (130), Expect = 2e-07 Identities = 37/117 (31%), Positives = 58/117 (49%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ +L R LT +GF+V + RE L+++D+ LP DG Sbjct: 8 LVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSIC 67 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 68 RRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>OMPR_ECOLI (P0AA16) Transcriptional regulatory protein ompR| Length = 239 Score = 54.7 bits (130), Expect = 2e-07 Identities = 37/117 (31%), Positives = 58/117 (49%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ +L R LT +GF+V + RE L+++D+ LP DG Sbjct: 8 LVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSIC 67 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 68 RRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>OMPR_ECOL6 (P0AA17) Transcriptional regulatory protein ompR| Length = 239 Score = 54.7 bits (130), Expect = 2e-07 Identities = 37/117 (31%), Positives = 58/117 (49%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ +L R LT +GF+V + RE L+++D+ LP DG Sbjct: 8 LVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSIC 67 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 68 RRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>OMPR_ECO57 (P0AA18) Transcriptional regulatory protein ompR| Length = 239 Score = 54.7 bits (130), Expect = 2e-07 Identities = 37/117 (31%), Positives = 58/117 (49%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ +L R LT +GF+V + RE L+++D+ LP DG Sbjct: 8 LVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSIC 67 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+L++ + P+I +TA DR + G DDY KP LL++I +L R Sbjct: 68 RRLRS--QSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 122
>PHOP_SALCH (Q57QC3) Virulence transcriptional regulatory protein phoP| Length = 224 Score = 54.3 bits (129), Expect = 2e-07 Identities = 33/117 (28%), Positives = 56/117 (47%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VEDN L +L G +V D PD+ ++D+ LP DG Sbjct: 5 LVVEDNALLRHHLKVQLQDSGHQVDATEDAREADYYLNEHLPDIAIVDLGLPDEDGLSLI 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+ ++ PV+ LTA D+ + +++G DDY TKP + +++++ L+ R Sbjct: 65 RRWRSSDI--SLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRR 119
>SP0A_BACAN (P52928) Stage 0 sporulation protein A| Length = 264 Score = 54.3 bits (129), Expect = 2e-07 Identities = 33/115 (28%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Frame = -2 Query: 576 LVEDNEDNWDMLSRRLTRKG-FEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 LV+DN++ ML + + EV+ A++G ++ + +QPD++++D+ +P +DG Sbjct: 8 LVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAV 67 Query: 402 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 238 +++ L+Q VI LTA +KA+ G + KP ++ L S I Q+ Sbjct: 68 LEKMRHIERLRQPSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQV 122
>DCTR_BACME (P39486) Probable C4-dicarboxylate response regulator dctR| Length = 228 Score = 54.3 bits (129), Expect = 2e-07 Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 2/115 (1%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTR-KGFEVVLA-HDGAAGVDTARREQPDLILMDMSLPVMDGWE 406 LL+ED+ ++ + + + +GF V+ A +G GV ++ QPDL ++DM +P DG Sbjct: 9 LLIEDDPMVQEVNRQFIEQVEGFTVIAAASNGLEGVQLIKQHQPDLTIIDMYMPSQDGLT 68 Query: 405 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 241 +Q++A+ +T VIA+TA + K + G DY KP + R+ + Q Sbjct: 69 TLQQIRANG--YKTDVIAVTAASDIETVRKVLQYGAVDYIMKPFKFERMKQALEQ 121
>PILG_PSEAE (P46384) Protein pilG| Length = 135 Score = 53.9 bits (128), Expect = 3e-07 Identities = 30/111 (27%), Positives = 54/111 (48%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 ++++D++ L + G +V+ A DG + P++I +D+ +P +DG++ Sbjct: 11 MVIDDSKTIRRTAETLLKKVGCDVITAIDGFDALAKIADTHPNIIFVDIMMPRLDGYQTC 70 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 247 +K + + TPVI L++ D+ K G D Y TKP LL I Sbjct: 71 ALIKNNSAFKSTPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAI 121
>BCER_BACSU (O34951) Sensory transduction protein bceR| Length = 231 Score = 53.5 bits (127), Expect = 4e-07 Identities = 31/120 (25%), Positives = 58/120 (48%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LL+ED+E + + RLT ++V D + + PD +++D+ LP DG+ Sbjct: 5 LLIEDDESLFHEIKDRLTGWSYDVYGIQDFSQVLQEFAAVNPDCVIIDVQLPKFDGFHWC 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SH 220 R +++ P++ L++ +D ++ G DD+ KP L++KI + R H Sbjct: 65 RLIRS---RSNVPILFLSSRDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAMFRRVHH 121
>BCER_BACHD (Q9K621) Sensory transduction protein bceR| Length = 231 Score = 53.5 bits (127), Expect = 4e-07 Identities = 29/117 (24%), Positives = 60/117 (51%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 +L+ED+ + + RL++ ++V + ++ +PDL+++D+ LP DG+ Sbjct: 5 MLIEDDHTLFSEIKERLSQWSYDVFGVSNFEKVIEEFTSLKPDLVIIDIQLPKFDGFHWC 64 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R ++ + P+I L++ +D ++ G DD+ KP L++KI +L R Sbjct: 65 RMIR---QHSNVPIIFLSSRDHPTDMVMSMQLGADDFIQKPFHFDVLVAKIQAILRR 118
>LUXO_VIBVY (Q7MM78) Regulatory protein luxO| Length = 453 Score = 53.5 bits (127), Expect = 4e-07 Identities = 32/106 (30%), Positives = 49/106 (46%) Frame = -2 Query: 576 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 397 +VED + L G ++ + G +D+ + PDLIL+D+ LP M G + Sbjct: 1 MVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLH 60 Query: 396 QLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 259 +KA P+I +TAH +A+ G D+ KP E RL Sbjct: 61 AVKASH--PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRL 104
>LUXO_VIBVU (Q8CWJ5) Regulatory protein luxO| Length = 453 Score = 53.5 bits (127), Expect = 4e-07 Identities = 32/106 (30%), Positives = 49/106 (46%) Frame = -2 Query: 576 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 397 +VED + L G ++ + G +D+ + PDLIL+D+ LP M G + Sbjct: 1 MVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLH 60 Query: 396 QLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 259 +KA P+I +TAH +A+ G D+ KP E RL Sbjct: 61 AVKASH--PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRL 104
>CHEB_NATPD (Q3IRR4) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 355 Score = 53.5 bits (127), Expect = 4e-07 Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 3/104 (2%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 ++V+D++ ++S L G VV A +G +GV+ R +PD++ MD+ +P MDG EA Sbjct: 9 VVVDDSQFMRTVISDMLDDAGITVVATASNGESGVEAVRTHEPDVVTMDLKMPGMDGIEA 68 Query: 402 TRQLKADPELQQTPVIALTAHA--MASDREKAIAAGCDDYDTKP 277 T ++ + TPV+ L+AHA A +A+ G D+ KP Sbjct: 69 TGRIMDE---CPTPVLVLSAHADDGAELTFEAMDEGAVDFFKKP 109
>REGX3_MYCLE (P54884) Sensory transduction protein regX3| Length = 198 Score = 53.5 bits (127), Expect = 4e-07 Identities = 30/89 (33%), Positives = 46/89 (51%) Frame = -2 Query: 495 DGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREK 316 DG A + R D++L+D+ LP M G + +QL+ + PVI +TA D+ Sbjct: 4 DGPAALAEFDRSGADIVLLDLMLPGMSGTDVYKQLRVRSSV---PVIMVTARDSEIDKVV 60 Query: 315 AIAAGCDDYDTKPIELPRLLSKIAQLLER 229 + G DDY TKP L+++I +L R Sbjct: 61 GLELGADDYVTKPYSARELIARIRAVLRR 89
>FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7.13.3)| Length = 777 Score = 53.5 bits (127), Expect = 4e-07 Identities = 28/80 (35%), Positives = 42/80 (52%) Frame = -2 Query: 519 GFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAH 340 G V A DG + DLIL D+ +P +DG+ R+LK+ P + + PVI L++ Sbjct: 682 GHSVEEAQDGEEAYVKVQNNTYDLILTDVQMPKLDGFSLARRLKSTPAVARIPVIILSSL 741 Query: 339 AMASDREKAIAAGCDDYDTK 280 A D+ + + AG D Y K Sbjct: 742 ASPEDKRRGLDAGADAYLVK 761
>NTRC_KLEPN (P03029) Nitrogen assimilation regulatory protein| Length = 469 Score = 53.1 bits (126), Expect = 6e-07 Identities = 32/121 (26%), Positives = 56/121 (46%) Frame = -2 Query: 570 EDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL 391 +D+ W +L R LT G G +D + PD++L D+ +P MDG +Q+ Sbjct: 11 DDSSIRW-VLERALTGAGLSCTTFESGNEVLDALTTKTPDVLLSDIRMPGMDGLALLKQI 69 Query: 390 KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 211 K + PVI +TAH+ A G DY KP ++ ++ + + + +++ Sbjct: 70 KQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVDRAISHYQEQQQ 127 Query: 210 P 208 P Sbjct: 128 P 128
>TCSB_EMENI (Q9P4U6) Two-component system protein B precursor (EC 2.7.13.3) (NHK1| protein) (SLN1 homolog) Length = 1070 Score = 53.1 bits (126), Expect = 6e-07 Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 6/113 (5%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKG-FEVVLAHDGAAGVDTARREQP-----DLILMDMSLPVM 418 L+ EDN N +++ R L + ++V + DG DT + DLI MD+ +P + Sbjct: 936 LVAEDNVVNQEVVLRMLALEDVYDVTVVKDGQEAYDTVKANMEEGKVFDLIFMDIQMPNL 995 Query: 417 DGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 259 DG E+TR ++ P++AL+A + S+ + + +G D + +KPI P L Sbjct: 996 DGIESTRLIRQMG--CSAPIVALSAFSEDSNIKDCMNSGMDMFISKPIRRPAL 1046
>SP0A_BACTU (P0A4I4) Stage 0 sporulation protein A| Length = 264 Score = 53.1 bits (126), Expect = 6e-07 Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 2/115 (1%) Frame = -2 Query: 576 LVEDNEDNWDMLSRRLTRKG-FEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 LV+DN++ ML + + EV+ A++G ++ +QPD++++D+ +P +DG Sbjct: 8 LVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAV 67 Query: 402 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 238 +++ L+Q VI LTA +KA+ G + KP ++ L S I Q+ Sbjct: 68 LEKMRHIERLKQPSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQV 122
>SP0A_BACCR (P0A4I3) Stage 0 sporulation protein A| Length = 264 Score = 53.1 bits (126), Expect = 6e-07 Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 2/115 (1%) Frame = -2 Query: 576 LVEDNEDNWDMLSRRLTRKG-FEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 LV+DN++ ML + + EV+ A++G ++ +QPD++++D+ +P +DG Sbjct: 8 LVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAV 67 Query: 402 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 238 +++ L+Q VI LTA +KA+ G + KP ++ L S I Q+ Sbjct: 68 LEKMRHIERLKQPSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQV 122
>SP0F_BACSU (P06628) Sporulation initiation phosphotransferase F (EC 2.7.-.-)| (Stage 0 sporulation protein F) Length = 124 Score = 53.1 bits (126), Expect = 6e-07 Identities = 30/115 (26%), Positives = 59/115 (51%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D +L+ ++G++ A +G +D +E+PDL+L+DM +P MDG E Sbjct: 7 LIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEIL 66 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 235 +++K E VI +TA+ +++ G + KP ++ + + + L Sbjct: 67 KRMKVIDE--NIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119
>LUXQ_VIBPA (Q87GU5) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 858 Score = 53.1 bits (126), Expect = 6e-07 Identities = 35/103 (33%), Positives = 53/103 (51%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLVEDN N +L T+ +V A DG ++ + DLILMD LP + G E T Sbjct: 737 LLVEDNHTNAFILKAFCTKYKMQVDWAKDGLEAMEFLKDHSYDLILMDNQLPHLGGIETT 796 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 271 ++++ + +L TP+ A TA + + AG + KPI+ Sbjct: 797 KEIRQNLKL-GTPIYACTADTAQETSDAFMEAGANYVLLKPIK 838
>PHOP_ECO57 (Q8X738) Transcriptional regulatory protein phoP| Length = 223 Score = 52.8 bits (125), Expect = 7e-07 Identities = 32/117 (27%), Positives = 57/117 (48%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VEDN L ++ G +V A D PD+ ++D+ LP DG Sbjct: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLI 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 + +++ P++ LTA D+ + ++AG DDY TKP + +++++ L+ R Sbjct: 64 CRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118
>NISR_LACLA (Q07597) Nisin biosynthesis regulatory protein nisR| Length = 229 Score = 52.8 bits (125), Expect = 7e-07 Identities = 30/117 (25%), Positives = 63/117 (53%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+++ ++ L + +EV + + +D + DLIL+D+ + ++G E Sbjct: 6 LIVDDDQEILKLMKTALEMRNYEVATHQNISLPLDITDFQGFDLILLDIMMSNIEGTEIC 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 ++++ + TP+I ++A D + G DDY TKP L +L++K+ ++R Sbjct: 66 KRIRREIS---TPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKR 119
>NTRC_ECOLI (P0AFB8) Nitrogen regulation protein NR(I)| Length = 469 Score = 52.4 bits (124), Expect = 9e-07 Identities = 31/121 (25%), Positives = 57/121 (47%) Frame = -2 Query: 570 EDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL 391 +D+ W +L R L G +GA ++ + PD++L D+ +P MDG +Q+ Sbjct: 11 DDSSIRW-VLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQI 69 Query: 390 KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 211 K + PVI +TAH+ A G DY KP ++ ++ + + + +++ Sbjct: 70 KQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 Query: 210 P 208 P Sbjct: 128 P 128
>NTRC_ECO57 (P0AFB9) Nitrogen regulation protein NR(I)| Length = 469 Score = 52.4 bits (124), Expect = 9e-07 Identities = 31/121 (25%), Positives = 57/121 (47%) Frame = -2 Query: 570 EDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL 391 +D+ W +L R L G +GA ++ + PD++L D+ +P MDG +Q+ Sbjct: 11 DDSSIRW-VLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQI 69 Query: 390 KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 211 K + PVI +TAH+ A G DY KP ++ ++ + + + +++ Sbjct: 70 KQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 Query: 210 P 208 P Sbjct: 128 P 128
>BVGS_BORPE (P16575) Virulence sensor protein bvgS precursor (EC 2.7.13.3)| Length = 1238 Score = 52.4 bits (124), Expect = 9e-07 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 5/122 (4%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D++ N +L ++L G V+ A G A + R D+++ D ++P + G+E Sbjct: 976 LVVDDHKPNLMLLRQQLDYLGQRVIAADSGEAALALWREHAFDVVITDCNMPGISGYELA 1035 Query: 399 RQLKAD---PELQQTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 235 R+++A P +T I TA A + ++ AAG DD KPI + L ++ + + Sbjct: 1036 RRIRAAEAAPGYGRTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNEAV 1095 Query: 234 ER 229 R Sbjct: 1096 AR 1097
>MAK2_SCHPO (O14002) Peroxide stress-activated histidine kinase mak2 (EC| 2.7.13.3) (Mcs4-associated kinase 2) (His-Asp phosphorelay kinase phk1) Length = 2310 Score = 52.4 bits (124), Expect = 9e-07 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 9/126 (7%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQ---PDLILMDMSLPVMDGW 409 L+ EDN +L+++L+ GF+V A DG V +Q +I D +P+ DG Sbjct: 2182 LIAEDNLIARKLLTKQLSNLGFQVHAAVDGVELVKMYEAKQFGFYSVIFADYHMPIRDGA 2241 Query: 408 EATRQLKADPELQQT----PVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQ 241 EA ++A PVIALTA S +++ + G + Y TKP +L++ + + Sbjct: 2242 EAVMDIRAYERENNCSTPIPVIALTADIQKSAKQRCLEVGMNFYLTKPFTQKQLVNAVRE 2301 Query: 240 --LLER 229 LLE+ Sbjct: 2302 FVLLEK 2307
>LUXQ_VIBCH (Q9KLK7) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 857 Score = 52.0 bits (123), Expect = 1e-06 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 2/105 (1%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLVEDN N + + G +V DG ++ + DL+LMD LP +DG E T Sbjct: 733 LLVEDNHTNAFIAQAFCRKYGLDVSWVTDGLQAIEELKIHDYDLVLMDNQLPYLDGVETT 792 Query: 399 RQLKADPELQQTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIE 271 R +K ++ PV+ A TA + R+ AG + KP++ Sbjct: 793 RTIK---KVLHLPVVVYACTADGLEETRQAFFHAGAEYVLVKPLK 834
>LUXO_VIBPA (Q87MX7) Regulatory protein luxO| Length = 453 Score = 52.0 bits (123), Expect = 1e-06 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Frame = -2 Query: 576 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 397 +VED + LT G ++ + G +++ PDLIL+D+ LP M G + Sbjct: 1 MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLH 60 Query: 396 QL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 259 + K+ P++ P+I +TAH +A+ G D+ KP E RL Sbjct: 61 AVKKSHPDV---PIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRL 104
>LUXO_VIBHA (P54299) Luminescence regulatory protein luxO| Length = 453 Score = 52.0 bits (123), Expect = 1e-06 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Frame = -2 Query: 576 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 397 +VED + LT G ++ + G +++ PDLIL+D+ LP M G + Sbjct: 1 MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLH 60 Query: 396 QL-KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 259 + K+ P++ P+I +TAH +A+ G D+ KP E RL Sbjct: 61 AVKKSHPDV---PIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRL 104
>CHVI_RHISN (P50351) Transcriptional regulatory protein chvI| Length = 238 Score = 52.0 bits (123), Expect = 1e-06 Identities = 37/121 (30%), Positives = 60/121 (49%) Frame = -2 Query: 576 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 397 LV+D+ + +S L +G++V D +A ++ P L + D+ +P MDG E R Sbjct: 6 LVDDDRNILTSVSIALEAEGYKVETYTDRSA-LEGLLARPPHLAIFDIKMPRMDGMELLR 64 Query: 396 QLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHR 217 +L+ +L PVI LT+ D + G DD+ TKP L+ ++ +L R S Sbjct: 65 RLRQKSDL---PVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRASGP 121 Query: 216 R 214 R Sbjct: 122 R 122
>LUXO1_VIBCH (Q9KT84) Regulatory protein luxO| Length = 455 Score = 51.6 bits (122), Expect = 2e-06 Identities = 30/106 (28%), Positives = 50/106 (47%) Frame = -2 Query: 576 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATR 397 +VED + LT ++ + G +++ R +PDLIL+D+ LP M G + Sbjct: 1 MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60 Query: 396 QLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 259 +K + P++ +TAH +A+ G D+ KP E RL Sbjct: 61 AVK--EKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRL 104
>SP0A_CLOPA (P52940) Stage 0 sporulation protein A homolog| Length = 273 Score = 51.6 bits (122), Expect = 2e-06 Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 3/117 (2%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVV--LAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 406 L+ +DN++ ++L+ L + VV +A DG + ++PDL+++D+ +P MDG Sbjct: 9 LIADDNKEFCNILNDYLLNQSDIVVVGIAKDGIEALKLIEEKKPDLVILDIIMPNMDGLV 68 Query: 405 ATRQLKADPELQQTP-VIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 238 +L A+ + P VI L+A ++AI G D Y KP ++ +I Q+ Sbjct: 69 VLEKL-ANINIDPVPNVIVLSAVGQDKITQRAITLGADYYVVKPFDMDVFTKRIRQM 124
>CHEY_TREPA (P96126) Chemotaxis protein cheY| Length = 144 Score = 51.6 bits (122), Expect = 2e-06 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 4/120 (3%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVV-LAHDGAAGVDTARREQP--DLILMDMSLPVMDGW 409 L+V+D+ + + LT +G+EV A DG GV+ + P DL+ MD+++P MDG Sbjct: 28 LVVDDSMFVSKQIGQILTSEGYEVADTAVDGVDGVEKYKAMSPGVDLVTMDITMPKMDGI 87 Query: 408 EATRQ-LKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 232 A + L+ D + V+ ++A +KA+ G +Y KP++ ++L +IA +L+ Sbjct: 88 TALEKILEFD---KNAKVVIISALGKEELVKKALLLGAKNYIVKPLDRKKVLERIASVLK 144
>RPFC_XANCP (P0C0F6) Sensory/regulatory protein rpfC (EC 2.7.13.3)| Length = 677 Score = 51.6 bits (122), Expect = 2e-06 Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+ +D+E N +L R L + G +V+ + +D E D +++D+ +P M+G + Sbjct: 416 LVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDML 475 Query: 399 RQLKADPE--LQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 238 +QL+ ++ TPV+ L+A AG + KP+ +LL +A L Sbjct: 476 KQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADL 531
>NTRC_PROVU (P28787) Nitrogen regulation protein NR(I)| Length = 473 Score = 51.6 bits (122), Expect = 2e-06 Identities = 33/121 (27%), Positives = 56/121 (46%) Frame = -2 Query: 570 EDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL 391 +D+ W +L R +TR+G + EQPD++L D+ +P MDG + + Sbjct: 11 DDSSIRW-VLERAITREGMLCRAFEHANDVLKALNSEQPDVLLSDIRMPDMDGLSLLKII 69 Query: 390 KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 211 K + PVI +TAH+ A G DY KP ++ L+ I + + +++ Sbjct: 70 KE--QYPTLPVIIMTAHSDLDAAVNAYQQGAFDYLPKPFDIDETLALIERAITHYREQKQ 127 Query: 210 P 208 P Sbjct: 128 P 128
>PILR_PSEAE (Q00934) Type 4 fimbriae expression regulatory protein pilR| Length = 445 Score = 51.2 bits (121), Expect = 2e-06 Identities = 36/115 (31%), Positives = 55/115 (47%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D D ++L L R + A + + RE DL L DM LP G + Sbjct: 7 LIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLV 66 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 235 + ++ QTPV +TA+ +A+ AG D+ TKP++L RL +A L Sbjct: 67 QYIQQ--RHPQTPVAMITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATAL 119
>CSSR_BACSU (O32192) Transcriptional regulatory protein cssR| Length = 225 Score = 51.2 bits (121), Expect = 2e-06 Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 4/119 (3%) Frame = -2 Query: 576 LVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQ---PDLILMDMSLPVMDGWE 406 LVED ++ ++L++ L +G+ + G + AR++ P L ++D+ LP DG+ Sbjct: 7 LVEDEDNLNELLTKYLENEGWNITSFTKG----EDARKKMTPSPHLWILDIMLPDTDGYT 62 Query: 405 ATRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLE 232 +++KA DP++ PVI ++A DR + G +DY +KP L+ ++ +LL+ Sbjct: 63 LIKEIKAKDPDV---PVIFISARDADIDRVLGLELGSNDYISKPFLPRELIIRVQKLLQ 118
>RPFC_XANC8 (P0C0F7) Sensory/regulatory protein rpfC (EC 2.7.13.3)| Length = 677 Score = 51.2 bits (121), Expect = 2e-06 Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+ +D+E N +L R L + G +V+ + +D E D +++D+ +P M+G + Sbjct: 416 LVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDML 475 Query: 399 RQLKADPE--LQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 238 +QL+ ++ TPV+ L+A AG + KP+ +LL +A L Sbjct: 476 KQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVLAAKLLDTLADL 531
>LUXN_VIBHA (P54301) Autoinducer 1 sensor kinase/phosphatase luxN (EC 2.7.13.3)| (EC 3.1.3.-) Length = 849 Score = 50.8 bits (120), Expect = 3e-06 Identities = 28/82 (34%), Positives = 51/82 (62%), Gaps = 1/82 (1%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D E ++ L + G + A++G V+ + DLILMD+ +PVM+G++A+ Sbjct: 724 LIVDDKEVQRALVQMYLNQLGVNSLQANNGENAVEVFKANHVDLILMDVQMPVMNGFDAS 783 Query: 399 RQLKADPELQ-QTPVIALTAHA 337 +++K EL QTP++AL+ + Sbjct: 784 QRIK---ELSPQTPIVALSGES 802
>CHEY_YEREN (Q93P00) Chemotaxis protein cheY| Length = 128 Score = 50.8 bits (120), Expect = 3e-06 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 1/118 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 L+V+D ++ L GF V A DG ++ R D ++ D ++P MDG + Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLRTGGFDFVVSDWNMPNMDGLDL 67 Query: 402 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 + ++AD L PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 68 LKTIRADGALGTLPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_THEMA (Q56312) Chemotaxis protein cheY| Length = 120 Score = 50.8 bits (120), Expect = 3e-06 Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 2/113 (1%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 L+V+D ML +T+ G+EV A +G V+ + +PD++ MD+++P M+G +A Sbjct: 6 LIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDA 65 Query: 402 TRQ-LKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 247 ++ +K DP + A+ AM + AI AG D+ KP + R++ + Sbjct: 66 IKEIMKIDPNAKIIVCSAMGQQAMVIE---AIKAGAKDFIVKPFQPSRVVEAL 115
>CHEY_PSEAE (Q51455) Chemotaxis protein cheY| Length = 124 Score = 50.8 bits (120), Expect = 3e-06 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 1/118 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGF-EVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 L+V+D ++ L GF A DG + D ++ D ++P M G + Sbjct: 4 LIVDDFSTMRRIIKNLLRDLGFTNTAEADDGTTALPMLHSGNFDFLVTDWNMPGMTGIDL 63 Query: 402 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R ++AD L+ PV+ +TA A +A AG + Y KP L KI ++ ER Sbjct: 64 LRAVRADERLKHLPVLMVTAEAKRDQIIEAAQAGVNGYVVKPFTAQVLKEKIEKIFER 121
>BVGS_BORPA (P40330) Virulence sensor protein bvgS precursor (EC 2.7.13.3)| Length = 1238 Score = 50.4 bits (119), Expect = 4e-06 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 5/122 (4%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D++ N +L ++L G VV A G A + D+++ D ++P ++G+E Sbjct: 976 LVVDDHKPNLMLLRQQLDYLGQRVVAADSGEAALALWHEHAFDVVITDCNMPGINGYELA 1035 Query: 399 RQLKAD---PELQQTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 235 R+++A P +T I TA A + ++ AAG DD KPI + L ++ + Sbjct: 1036 RRIRAAEAAPGYGRTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNEAA 1095 Query: 234 ER 229 R Sbjct: 1096 AR 1097
>BVGS_BORBR (P26762) Virulence sensor protein bvgS precursor (EC 2.7.13.3)| Length = 1238 Score = 50.4 bits (119), Expect = 4e-06 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 5/122 (4%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D++ N +L ++L G VV A G A + D+++ D ++P ++G+E Sbjct: 976 LVVDDHKPNLMLLRQQLDYLGQRVVAADSGEAALALWHEHAFDVVITDCNMPGINGYELA 1035 Query: 399 RQLKAD---PELQQTPVI--ALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 235 R+++A P +T I TA A + ++ AAG DD KPI + L ++ + Sbjct: 1036 RRIRAAEAAPGYGRTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNEAA 1095 Query: 234 ER 229 R Sbjct: 1096 AR 1097
>CHEB_RHILO (Q98PD1) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 339 Score = 50.1 bits (118), Expect = 5e-06 Identities = 22/41 (53%), Positives = 32/41 (78%) Frame = -2 Query: 504 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKAD 382 +A +G V+ RR+ PDLILMD+++PVMDG EATR++ A+ Sbjct: 31 IATNGREAVEVCRRDLPDLILMDLAMPVMDGVEATRRIMAE 71
>HNR_SHIFL (P0AEV3) Protein hnr| Length = 337 Score = 50.1 bits (118), Expect = 5e-06 Identities = 30/103 (29%), Positives = 54/103 (52%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED + +L + G VLA DG ++ PDL++ D+++P M+G + Sbjct: 11 LIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLL 70 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 271 ++ + QTPV+ ++A +D KA+ G +D KP++ Sbjct: 71 EHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>HNR_ECOLI (P0AEV1) Protein hnr| Length = 337 Score = 50.1 bits (118), Expect = 5e-06 Identities = 30/103 (29%), Positives = 54/103 (52%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED + +L + G VLA DG ++ PDL++ D+++P M+G + Sbjct: 11 LIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLL 70 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 271 ++ + QTPV+ ++A +D KA+ G +D KP++ Sbjct: 71 EHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>HNR_ECO57 (P0AEV2) Protein hnr| Length = 337 Score = 50.1 bits (118), Expect = 5e-06 Identities = 30/103 (29%), Positives = 54/103 (52%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED + +L + G VLA DG ++ PDL++ D+++P M+G + Sbjct: 11 LIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLL 70 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 271 ++ + QTPV+ ++A +D KA+ G +D KP++ Sbjct: 71 EHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>LUXQ_VIBHA (P54302) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)| (EC 3.1.3.-) Length = 859 Score = 50.1 bits (118), Expect = 5e-06 Identities = 35/103 (33%), Positives = 50/103 (48%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLVEDN N +L + +V A DG ++ DLILMD LP + G E T Sbjct: 738 LLVEDNHTNAFILQAFCKKYKMQVDWAKDGLDAMELLSDTTYDLILMDNQLPHLGGIETT 797 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIE 271 +++ + L TP+ A TA + +AAG + KPI+ Sbjct: 798 HEIRQNLRL-GTPIYACTADTAKETSDAFMAAGANYVMLKPIK 839
>VRAR_STAES (Q8CNP9) Response regulator protein vraR| Length = 209 Score = 50.1 bits (118), Expect = 5e-06 Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 4/104 (3%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRL-TRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDG 412 L V+D+E +S L T++ EVV +GA+G D A +PDLILMD+ + MDG Sbjct: 6 LFVDDHEMVRIGISSYLSTQEDIEVV--GEGASGKDAITKAHELKPDLILMDLLMDDMDG 63 Query: 411 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 280 EAT ++K D L Q V+ LT+ + +A+ +G D Y K Sbjct: 64 VEATTEIKKD--LPQIKVVMLTSFIEDKEVYRALDSGVDSYILK 105
>VRAR_STAEQ (Q5HN50) Response regulator protein vraR| Length = 209 Score = 50.1 bits (118), Expect = 5e-06 Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 4/104 (3%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRL-TRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDG 412 L V+D+E +S L T++ EVV +GA+G D A +PDLILMD+ + MDG Sbjct: 6 LFVDDHEMVRIGISSYLSTQEDIEVV--GEGASGKDAITKAHELKPDLILMDLLMDDMDG 63 Query: 411 WEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 280 EAT ++K D L Q V+ LT+ + +A+ +G D Y K Sbjct: 64 VEATTEIKKD--LPQIKVVMLTSFIEDKEVYRALDSGVDSYILK 105
>VRAR_STAAW (Q7A0I0) Response regulator protein vraR| Length = 209 Score = 50.1 bits (118), Expect = 5e-06 Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 3/103 (2%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDGW 409 L V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MDG Sbjct: 6 LFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGV 64 Query: 408 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 280 EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 65 EATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAU (P0C0Z1) Response regulator protein vraR| Length = 209 Score = 50.1 bits (118), Expect = 5e-06 Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 3/103 (2%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDGW 409 L V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MDG Sbjct: 6 LFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGV 64 Query: 408 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 280 EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 65 EATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAS (Q6G850) Response regulator protein vraR| Length = 209 Score = 50.1 bits (118), Expect = 5e-06 Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 3/103 (2%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDGW 409 L V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MDG Sbjct: 6 LFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGV 64 Query: 408 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 280 EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 65 EATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAR (Q6GFH3) Response regulator protein vraR| Length = 209 Score = 50.1 bits (118), Expect = 5e-06 Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 3/103 (2%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDGW 409 L V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MDG Sbjct: 6 LFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGV 64 Query: 408 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 280 EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 65 EATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAN (Q7A4R9) Response regulator protein vraR| Length = 209 Score = 50.1 bits (118), Expect = 5e-06 Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 3/103 (2%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDGW 409 L V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MDG Sbjct: 6 LFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGV 64 Query: 408 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 280 EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 65 EATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAM (Q7A2Q1) Response regulator protein vraR| Length = 209 Score = 50.1 bits (118), Expect = 5e-06 Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 3/103 (2%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDGW 409 L V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MDG Sbjct: 6 LFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGV 64 Query: 408 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 280 EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 65 EATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>VRAR_STAAC (Q5HEP0) Response regulator protein vraR| Length = 209 Score = 50.1 bits (118), Expect = 5e-06 Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 3/103 (2%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDGW 409 L V+D+E +S L+ + ++ + +GA+G + A +PDLILMD+ + MDG Sbjct: 6 LFVDDHEMVRIGISSYLSTQS-DIEVVGEGASGKEAIAKAHELKPDLILMDLLMDDMDGV 64 Query: 408 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 280 EAT Q+K D L Q V+ LT+ + +A+ AG D Y K Sbjct: 65 EATTQIKKD--LPQIKVLMLTSFIEDKEVYRALDAGVDSYILK 105
>CHEY_YERPE (Q8D0P1) Chemotaxis protein cheY| Length = 128 Score = 49.7 bits (117), Expect = 6e-06 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 L+V+D ++ L GF V A DG ++ R D ++ D ++P MDG + Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFHNVEEAEDGVDALNKLRAGGFDFVVSDWNMPNMDGLDL 67 Query: 402 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 + ++ D L PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 68 LKTIRTDGALATLPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>SP0A_MOOTA (P52941) Stage 0 sporulation protein A homolog| Length = 256 Score = 49.7 bits (117), Expect = 6e-06 Identities = 28/116 (24%), Positives = 61/116 (52%), Gaps = 2/116 (1%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVV--LAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 406 L+ +DN + ++L + V+ +AH+G ++ + ++PD++++D+ +P +DG Sbjct: 7 LIADDNREFCEVLEEYFNEQEDFVLSGVAHNGQETLELIQEQEPDIVILDIIMPHLDGIG 66 Query: 405 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 238 +L+ + ++ LTA S +++ G D Y KP +L L +++ QL Sbjct: 67 VLEKLQVLNFEPRPKIVILTALGQESMTMRSVELGADYYILKPFDLEVLGNRLRQL 122
>CHEB_HALSA (Q9HQW6) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 347 Score = 49.7 bits (117), Expect = 6e-06 Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 17/164 (10%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 L+V+D+ ++S L G +VV A +GA +D QPD+I MD+ +P MDG EA Sbjct: 5 LVVDDSHFMRTVISDILEDGGVDVVGTAENGARALDAVTDVQPDVITMDVEMPEMDGIEA 64 Query: 402 TRQLKADPELQQTPVIALTAHAM--ASDREKAIAAGCDDYDTKP------------IELP 265 T ++ + Q TP++ ++A A +A+ G D KP EL Sbjct: 65 TAEIMRE---QPTPILMVSALTTEDADATLEAMEKGAIDTFAKPGGTISTELSGHSEELV 121 Query: 264 RLLSKIAQLLER*SH--RREPWLPP*PSTAMKLRRQFLLFGVGT 139 + ++A H EP PP +T+ LL G T Sbjct: 122 AAVERVASADPTAGHDVEMEPASPPDATTSEYADNPTLLIGAST 165
>SP0A_CLOBE (P52936) Stage 0 sporulation protein A homolog (Fragment)| Length = 223 Score = 49.7 bits (117), Expect = 6e-06 Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 3/117 (2%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVV--LAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 406 L+ +DN++ +L+ L + VV +A DG+ ++ +PDL+++D+ +P +DG Sbjct: 9 LIADDNKEFCSILNDYLLNQKDIVVTGIAKDGSEALELIVERKPDLVILDIIMPHLDGLG 68 Query: 405 ATRQLKADPELQQTP-VIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 238 +L +L++ P +I L+A ++AI G D Y KP ++ +I ++ Sbjct: 69 VLEKLNT-MQLEKVPRIIILSAVGQDKITQQAITLGADYYTVKPFDMEVFTKRIREM 124
>CHEB_DESPS (Q6AJV3) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 364 Score = 49.7 bits (117), Expect = 6e-06 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 1/93 (1%) Frame = -2 Query: 519 GFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTA 343 G EV+ +AH+G +D R +PDLI +D+ +PVM+G E LK P+ +++ Sbjct: 28 GIEVIGVAHNGKIALDKIRLSKPDLITLDIEMPVMNGIELLEHLKDIPDAPGAVMLSTLT 87 Query: 342 HAMASDREKAIAAGCDDYDTKPIELPRLLSKIA 244 + KA+ G D+ KP E +K A Sbjct: 88 SDGSRMTMKALELGAFDFILKPQEKTPAANKAA 120
>CHEY_CAMJE (P71129) Chemotaxis protein cheY homolog| Length = 130 Score = 49.7 bits (117), Expect = 6e-06 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 2/117 (1%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVL-AHDGAAGVDT-ARREQPDLILMDMSLPVMDGWE 406 L+V+D+ ++ LTR G + VL A G D + E +++ D ++P M+G E Sbjct: 4 LVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKNEDVKVLITDWNMPEMNGLE 63 Query: 405 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 235 ++++A+ + + P+I +T ++ A+ AG ++Y KP L K+ +L Sbjct: 64 LVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEDVL 120
>SP0A_CLOAB (P58253) Stage 0 sporulation protein A homolog| Length = 281 Score = 49.7 bits (117), Expect = 6e-06 Identities = 28/116 (24%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVV--LAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 406 L+ +DN++ ++L+ L + +V +A DG + ++PDL+++D+ +P +DG Sbjct: 9 LIADDNKEFCNILNDYLLNQSDMIVVGIAKDGVEALKLIENKKPDLVVLDIIMPRLDGLG 68 Query: 405 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 238 +L +I L+A ++AI G D Y KP ++ ++I ++ Sbjct: 69 VLEKLNNKDAENLPRIIVLSAVGQDKITQRAITLGADYYVVKPFDMDVFTNRIREM 124
>PRR1_SCHPO (O14283) Transcription factor prr1 (Pombe response regulator 1)| Length = 539 Score = 49.3 bits (116), Expect = 8e-06 Identities = 38/115 (33%), Positives = 55/115 (47%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLVED+E + M + LT +V +A DG V+ A DLILMD LP +DG T Sbjct: 371 LLVEDDELSRRMTIKFLTSFDCQVDVAVDGIGAVNKANAGGFDLILMDFILPNLDGLSVT 430 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 235 ++ TP++A+T++ +D G D KP LL + + L Sbjct: 431 CLIRQYD--HNTPILAITSNISMNDAVTYFNHGVTDLLVKPFTKLTLLQLLKKQL 483
>SP0A_BACSU (P06534) Stage 0 sporulation protein A| Length = 267 Score = 49.3 bits (116), Expect = 8e-06 Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 2/115 (1%) Frame = -2 Query: 576 LVEDNEDNWDMLSRRLT-RKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 + +DN + +LS + ++ EV+ +A++G + + + PD++++D+ +P +DG Sbjct: 8 VADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAV 67 Query: 402 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 238 +L+ +Q VI LTA +KA+ G + KP ++ L+ I Q+ Sbjct: 68 LERLRESDLKKQPNVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQV 122
>SP0A_BREPA (P52929) Stage 0 sporulation protein A (Fragment)| Length = 212 Score = 49.3 bits (116), Expect = 8e-06 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 2/117 (1%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRK-GFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWE 406 LL +DN + +L ++ + V+ +A++G V + PD++++D+ +P +DG Sbjct: 7 LLADDNREFVSLLEEYISSQYDMNVIGVAYNGNEVVRLLQERVPDVLILDIIMPHLDGLA 66 Query: 405 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 235 Q++A Q +I LTA +KA+ G Y KP ++ L +I Q++ Sbjct: 67 VLEQIQAMRLSPQPKIIMLTAFGQEEITKKAVELGAAYYILKPFDMEVLAQRIRQII 123
>CHEY_SALTY (P0A2D5) Chemotaxis protein cheY| Length = 128 Score = 48.9 bits (115), Expect = 1e-05 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 L+V+D ++ L GF V A DG ++ + I+ D ++P MDG E Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDGLEL 67 Query: 402 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 68 LKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_SALTI (P0A2D6) Chemotaxis protein cheY| Length = 128 Score = 48.9 bits (115), Expect = 1e-05 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 L+V+D ++ L GF V A DG ++ + I+ D ++P MDG E Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDGLEL 67 Query: 402 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 68 LKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_ENTCL (Q9FAD7) Chemotaxis protein cheY| Length = 128 Score = 48.9 bits (115), Expect = 1e-05 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 L+V+D ++ L GF V A DG ++ + ++ D ++P MDG E Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLEL 67 Query: 402 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 68 LKTIRADAGMASMPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLGKIFEK 125
>CHEY_LISMO (P0A4H5) Chemotaxis protein cheY| Length = 119 Score = 48.9 bits (115), Expect = 1e-05 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 2/113 (1%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 L+V+D M+ + FEVV A +G V +PD++ +D+++P MDG EA Sbjct: 5 LIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYDEVKPDIVTLDITMPEMDGLEA 64 Query: 402 TRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 247 Q+ A DP + A+ M D AI G D+ KP + R+L + Sbjct: 65 LAQIMAKDPSAKVIMCSAMGQQGMVVD---AIKKGAKDFIVKPFQADRVLEAL 114
>CHEY_LISIN (P0A4H6) Chemotaxis protein cheY| Length = 119 Score = 48.9 bits (115), Expect = 1e-05 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 2/113 (1%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 L+V+D M+ + FEVV A +G V +PD++ +D+++P MDG EA Sbjct: 5 LIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYDEVKPDIVTLDITMPEMDGLEA 64 Query: 402 TRQLKA-DPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 247 Q+ A DP + A+ M D AI G D+ KP + R+L + Sbjct: 65 LAQIMAKDPSAKVIMCSAMGQQGMVVD---AIKKGAKDFIVKPFQADRVLEAL 114
>NTRC_SALTY (P41789) Nitrogen regulation protein NR(I)| Length = 469 Score = 48.5 bits (114), Expect = 1e-05 Identities = 30/121 (24%), Positives = 55/121 (45%) Frame = -2 Query: 570 EDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQL 391 +D+ W +L R L G +G + + PD++L D+ +P MDG +Q+ Sbjct: 11 DDSSIRW-VLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQI 69 Query: 390 KADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 211 K + PVI +TAH+ A G DY KP ++ ++ + + + +++ Sbjct: 70 KQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQ 127 Query: 210 P 208 P Sbjct: 128 P 128
>VRAR_STAHJ (Q4L7J5) Response regulator protein vraR| Length = 209 Score = 48.5 bits (114), Expect = 1e-05 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 3/103 (2%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDGW 409 L V+D+E +S L+ + ++ + +G +G D A +PDLILMD+ + MDG Sbjct: 6 LFVDDHEMVRIGISSYLSTQS-DIEIVGEGESGKDAIAKAHELKPDLILMDLLMDDMDGV 64 Query: 408 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 280 EAT Q+K D L V+ LT+ + +A+ AG D Y K Sbjct: 65 EATTQIKKD--LPHIKVVMLTSFIEDKEVYRALDAGVDSYILK 105
>CHEY_SHIFL (P0AE69) Chemotaxis protein cheY| Length = 128 Score = 48.5 bits (114), Expect = 1e-05 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 L+V+D ++ L GF V A DG ++ + ++ D ++P MDG E Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 67 Query: 402 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 68 LKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_ECOLI (P0AE67) Chemotaxis protein cheY| Length = 128 Score = 48.5 bits (114), Expect = 1e-05 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 L+V+D ++ L GF V A DG ++ + ++ D ++P MDG E Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 67 Query: 402 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 68 LKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>CHEY_ECO57 (P0AE68) Chemotaxis protein cheY| Length = 128 Score = 48.5 bits (114), Expect = 1e-05 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 L+V+D ++ L GF V A DG ++ + ++ D ++P MDG E Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 67 Query: 402 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 68 LKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>SP0A_BACME (P52932) Stage 0 sporulation protein A (Fragment)| Length = 212 Score = 48.5 bits (114), Expect = 1e-05 Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 2/115 (1%) Frame = -2 Query: 576 LVEDNEDNWDMLSRRLT-RKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 LV+DN + +L ++ ++ EV+ +A++G + + + PD++++D+ +P +DG Sbjct: 8 LVDDNRELIGLLEDYISEQEDMEVIGVAYNGQECLSILKDKNPDVLVLDIIMPHLDGLAV 67 Query: 402 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 238 QLK + VI LTA +KA+ G + KP ++ L++ I Q+ Sbjct: 68 LGQLKEMKKENYPNVIMLTAFGQEDVTKKAVDLGAAYFILKPFDMENLVNHIRQV 122
>PMRA_PECCC (Q70FH0) Transcriptional regulatory protein pmrA| Length = 222 Score = 48.5 bits (114), Expect = 1e-05 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 9/126 (7%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPD---------LILMDMSL 427 L+VED+ +L ++G + L+H+G A ++ D L+++D+ L Sbjct: 4 LIVEDD---------KLLQEGLLLALSHEGYACDCAGTAKEADALIGSAHYSLVILDLGL 54 Query: 426 PVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 247 P DG + + + Q PV+ LTA DR + G DDY KP L L +++ Sbjct: 55 PDDDGLALLSRWRKNN--YQHPVLILTARDKVDDRVSGLDVGADDYLAKPFALTELQARV 112 Query: 246 AQLLER 229 L+ R Sbjct: 113 RALIRR 118
>RPFG_XANC8 (Q4UU85) Response regulator rpfG| Length = 378 Score = 48.1 bits (113), Expect = 2e-05 Identities = 26/74 (35%), Positives = 41/74 (55%) Frame = -2 Query: 453 DLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPI 274 DL+L+D +P MDG E R+L+ P + P+I +T R+ A+ AG D+ KPI Sbjct: 75 DLLLLDYRMPGMDGLEFARRLRRLPSHRDIPIILITIVGDEPIRQAALEAGVIDFLVKPI 134 Query: 273 ELPRLLSKIAQLLE 232 L ++ + LL+ Sbjct: 135 RPRELRARCSNLLQ 148
>VRAR_STAS1 (Q49YS9) Response regulator protein vraR| Length = 209 Score = 48.1 bits (113), Expect = 2e-05 Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDT---ARREQPDLILMDMSLPVMDGW 409 L V+D+E +S L+ + ++ + +G +G D A +PDLILMD+ + MDG Sbjct: 6 LFVDDHEMVRIGISSYLSTQS-DIDVVGEGKSGKDAIEKAHELKPDLILMDLLMDDMDGV 64 Query: 408 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTK 280 EAT Q+K D L V+ LT++ ++ +A+ +G D Y K Sbjct: 65 EATEQVKKD--LPNIKVVMLTSYIEDNEVYRALDSGVDSYILK 105
>CHEY_ECOL6 (Q8FGP6) Chemotaxis protein cheY| Length = 128 Score = 48.1 bits (113), Expect = 2e-05 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFE-VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 L+V+D ++ L GF V A DG ++ + ++ D ++P MDG E Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGLDALNKLQAGGYGFVISDWNMPNMDGLEL 67 Query: 402 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 + ++AD + PV+ +TA A + A AG Y KP L K+ ++ E+ Sbjct: 68 LKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125
>RCP1_SYNY3 (Q55169) Response regulator rcp1| Length = 147 Score = 48.1 bits (113), Expect = 2e-05 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 9/120 (7%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGF--EVVLAHDGAAGVDTARRE-------QPDLILMDMSL 427 LLVED++ + ++ L E+++ DG A + +++ +P+LIL+D++L Sbjct: 12 LLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNL 71 Query: 426 PVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 247 P DG E ++K +P+L++ PV+ LT D + + Y TK L L + Sbjct: 72 PKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMV 131
>SPAR_BACSU (P33112) Subtilin biosynthesis regulatory protein spaR| Length = 220 Score = 47.8 bits (112), Expect = 2e-05 Identities = 35/117 (29%), Positives = 57/117 (48%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L V+D +D ++ L R +V + D G + DLIL+D+ +P +DG+E Sbjct: 5 LAVDDEKDILVLIQNILRRDQHQVDIL-DHVHGQPPDVFQGYDLILLDVMMPDIDGFELC 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 +Q++ L P++ LTA K + G DDY TKP + L +++ L R Sbjct: 64 KQIRP---LVDCPILFLTAKTEEEAIVKGLITGGDDYITKPFGVRELSARVNAHLRR 117
>RSTA_ECOLI (P52108) Transcriptional regulatory protein rstA| Length = 242 Score = 47.8 bits (112), Expect = 2e-05 Identities = 31/111 (27%), Positives = 53/111 (47%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 + VED+ + +++ L + +V + G +T RE PDL+L+D+ LP DG Sbjct: 8 VFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTIC 67 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKI 247 R L+A P++ LT+ + A+ G DY K LL+++ Sbjct: 68 RDLRAK---WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARL 115
>BASR_SALTY (P36556) Transcriptional regulatory protein basR/pmrA| Length = 222 Score = 47.8 bits (112), Expect = 2e-05 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%) Frame = -2 Query: 483 GVDTARREQPDL-------ILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASD 325 GV TAR + L +++D+ LP DG +++ + PV+ LTAH +D Sbjct: 29 GVSTARAAEHSLESGHYSLMVLDLGLPDEDGLHFLTRIRQ--KKYTLPVLILTAHDTLND 86 Query: 324 REKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SHRRE 211 R + G DDY KP L L ++I LL R +++ E Sbjct: 87 RITGLDVGADDYLVKPFALEELHARIRALLRRHNNQGE 124
>CHEB_VIBF1 (Q5E3S1) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 376 Score = 47.8 bits (112), Expect = 2e-05 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 12/147 (8%) Frame = -2 Query: 504 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQ-LKADPELQQTPVIALTA--HAM 334 +A +G V+ A+ +PD+I MD+ +PVMDG A R+ +KA P TP + ++ H Sbjct: 33 VAVNGKEAVEKAKSLKPDVITMDIEMPVMDGISAVREIMKACP----TPTLMFSSLTHDG 88 Query: 333 ASDREKAIAAGCDDYDTKPIE---------LPRLLSKIAQLLER*SHRREPWLPP*PSTA 181 A A+ AG D+ K E + L +IA++ + S R P L ++ Sbjct: 89 AKATLDALDAGALDFLPKKFEDIARNRDEAVSLLQKRIAEIARKKSFMRRPVLSSQSTST 148 Query: 180 MKLRRQFLLFGVGTTFTAIAAISLSDV 100 ++ R TT TA +A++ S V Sbjct: 149 VESR-------TATTRTATSALTASPV 168
>CCDB_BACSU (P45709) Protein ccdB| Length = 120 Score = 47.4 bits (111), Expect = 3e-05 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Frame = -2 Query: 501 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQ-LKADPELQQTPVIALTAHAMASD 325 A DG D ++ +PDL+ MD+++PV +G +A R L DP+ + VI TA Sbjct: 32 AADGEQAADLYKKLRPDLVTMDITMPVKNGIKALRDILTFDPKAK---VIMCTAMRQQRI 88 Query: 324 REKAIAAGCDDYDTKPIELPRLLSKIAQLL 235 +AI G D+ KP E ++L +++++ Sbjct: 89 VTEAIELGAKDFIVKPFEETKVLEAVSRVM 118
>CHEY_HELPJ (Q9ZM64) Chemotaxis protein cheY homolog| Length = 124 Score = 47.4 bits (111), Expect = 3e-05 Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 2/117 (1%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLA--HDGAAGVDTARREQPDLILMDMSLPVMDGWE 406 L+V+D+ ++ L+R G+E VL H A +++ D ++P M+G + Sbjct: 4 LVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLD 63 Query: 405 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 235 ++++AD ++ P+I +T ++ A+ AG ++Y KP L K+ +L Sbjct: 64 LVKKVRADNRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 120
>RSSB_SERMA (Q8GP20) Swarming motility regulation protein rssB| Length = 219 Score = 47.0 bits (110), Expect = 4e-05 Identities = 35/117 (29%), Positives = 54/117 (46%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 LLVED+ L R L GF + A + DL+L+D++LP DG + Sbjct: 4 LLVEDDLQLGKALCRALELAGFNLCWVRLIADAENKLSSGGFDLMLLDLTLPDGDGLQKL 63 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 +A Q P+I LTA ++ +G +D+ KP LP L+S++ + R Sbjct: 64 IAWRAAG--QNIPIIILTARDRIESLVNSLDSGANDFLAKPFALPELISRVKAVNRR 118
>ARCA_HAEIN (P44918) Aerobic respiration control protein arcA homolog| Length = 236 Score = 47.0 bits (110), Expect = 4e-05 Identities = 34/117 (29%), Positives = 53/117 (45%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED + L +G++V A +G +L++MD++LP +G Sbjct: 7 LVVEDEIVTRNTLKGIFEAEGYDVFEAENGVEMHHILANHNINLVVMDINLPGKNGLLLA 66 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+L+ + L P+I LT D+ + G DDY TKP L + LL R Sbjct: 67 RELREELSL---PLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHR 120
>CHEB1_RALEJ (Q46V28) Chemotaxis response regulator protein-glutamate| methylesterase 1 (EC 3.1.1.61) Length = 341 Score = 47.0 bits (110), Expect = 4e-05 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Frame = -2 Query: 516 FEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAH 340 FE+V +A DG V A PD+ILMD+ +PVMDG EATR++ A P++ +T Sbjct: 26 FEIVWVAGDGEQAVQLAASHTPDVILMDLLMPVMDGVEATRRIMA---ATPCPIVVVTTD 82 Query: 339 AMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 238 + + A G D ++ P L A+L Sbjct: 83 LGRNATQVFDAMGHGAIDA--VDTPTLTESDAKL 114
>ACTR_RHIME (Q52913) Acid tolerance regulatory protein actR| Length = 194 Score = 47.0 bits (110), Expect = 4e-05 Identities = 37/137 (27%), Positives = 63/137 (45%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D+ L+R + +GF V +A A G+ A+ P ++D+ L G + Sbjct: 26 LIVDDDTAFLRRLARAMEARGFAVEIAESVAEGIAKAKTRPPKHAVIDLRLSDGSGLDVI 85 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER*SH 220 ++ T +I LT + + A+ G DY KP + +L A L++R Sbjct: 86 EAIRG--RRDDTRMIVLTGYGNIATAVNAVKLGALDYLAKPADADDIL---AALIQRPGE 140 Query: 219 RREPWLPP*PSTAMKLR 169 R EP P P +A ++R Sbjct: 141 RVEP--PENPMSADRVR 155
>VANR_ENTFC (Q06239) Regulatory protein vanR| Length = 231 Score = 46.6 bits (109), Expect = 5e-05 Identities = 27/117 (23%), Positives = 54/117 (46%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D + D++ L + + V + ++ + + DL ++D+ LP G Sbjct: 6 LIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLTIC 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 ++++ + P+I LT D+ + G DDY TKP L++++ L R Sbjct: 66 QKIR---DKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119
>ARCA_SHIFL (P0A9Q4) Aerobic respiration control protein arcA| Length = 238 Score = 46.6 bits (109), Expect = 5e-05 Identities = 34/117 (29%), Positives = 52/117 (44%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED + L +G++V A DGA +L++MD++LP +G Sbjct: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+L+ E ++ LT D+ + G DDY TKP L + LL R Sbjct: 67 RELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120
>ARCA_ECOLI (P0A9Q1) Aerobic respiration control protein arcA (Dye resistance| protein) Length = 238 Score = 46.6 bits (109), Expect = 5e-05 Identities = 34/117 (29%), Positives = 52/117 (44%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED + L +G++V A DGA +L++MD++LP +G Sbjct: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+L+ E ++ LT D+ + G DDY TKP L + LL R Sbjct: 67 RELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120
>ARCA_ECOL6 (P0A9Q2) Aerobic respiration control protein arcA| Length = 238 Score = 46.6 bits (109), Expect = 5e-05 Identities = 34/117 (29%), Positives = 52/117 (44%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED + L +G++V A DGA +L++MD++LP +G Sbjct: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+L+ E ++ LT D+ + G DDY TKP L + LL R Sbjct: 67 RELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120
>ARCA_ECO57 (P0A9Q3) Aerobic respiration control protein arcA| Length = 238 Score = 46.6 bits (109), Expect = 5e-05 Identities = 34/117 (29%), Positives = 52/117 (44%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+VED + L +G++V A DGA +L++MD++LP +G Sbjct: 7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLA 66 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLLER 229 R+L+ E ++ LT D+ + G DDY TKP L + LL R Sbjct: 67 RELR---EQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120
>CHEY_HELPY (P71403) Chemotaxis protein cheY homolog| Length = 124 Score = 46.6 bits (109), Expect = 5e-05 Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 2/117 (1%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLA--HDGAAGVDTARREQPDLILMDMSLPVMDGWE 406 L+V+D+ ++ L+R G+E VL H A +++ D ++P M+G + Sbjct: 4 LVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLD 63 Query: 405 ATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQLL 235 +++++D ++ P+I +T ++ A+ AG ++Y KP L K+ +L Sbjct: 64 LVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 120
>SP0A_BACST (P52934) Stage 0 sporulation protein A| Length = 259 Score = 46.2 bits (108), Expect = 7e-05 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Frame = -2 Query: 576 LVEDNEDNWDMLSRRLTRK-GFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEA 403 + +DN + +L ++ + EV+ A++G + ++PD++L+D+ +P +DG Sbjct: 7 IADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAV 66 Query: 402 TRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSKIAQL 238 +++A E Q VI LTA +KA+ G + KP ++ L I Q+ Sbjct: 67 LERIRAGFE-HQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQV 120
>CHEB_SYMTH (Q67P67) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 362 Score = 45.8 bits (107), Expect = 9e-05 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Frame = -2 Query: 501 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAM--AS 328 A DG G++ + QPD++ +D+ +P +DG+ R++ A + TPV+ +++H A Sbjct: 40 ARDGQDGLEKVLQLQPDVVTLDIEMPRLDGYGTLREIMA---RRPTPVVMVSSHTREGAE 96 Query: 327 DREKAIAAGCDDYDTKP 277 +A+A G D+ KP Sbjct: 97 ATIRALALGAVDFVAKP 113
>CHEB1_GEOSL (P62638) Chemotaxis response regulator protein-glutamate| methylesterase of group 1 operon (EC 3.1.1.61) Length = 362 Score = 45.8 bits (107), Expect = 9e-05 Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 3/105 (2%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRK--GFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGW 409 +LV D+ M+ R + K EVV +A DG GV+ A +PDLI MD+ +P +DG Sbjct: 11 VLVVDDSSFMRMVIRSVLEKDPAIEVVGIAVDGMEGVEKALALKPDLITMDIEMPRLDGI 70 Query: 408 EATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPI 274 A +Q+ A + V LT A A+ AG DY K + Sbjct: 71 SALKQVMAKCPTRVLMVSTLTCEG-AKATFDALDAGAIDYIPKNV 114
>CHEB3_PSEPK (Q88MS5) Chemotaxis response regulator protein-glutamate| methylesterase of group 3 operon (EC 3.1.1.61) Length = 337 Score = 45.8 bits (107), Expect = 9e-05 Identities = 22/43 (51%), Positives = 30/43 (69%) Frame = -2 Query: 510 VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKAD 382 V +A +GA V + PDLILMD+ +PVMDG EATR++ A+ Sbjct: 29 VWVASNGAEAVQRCTEQLPDLILMDLIMPVMDGVEATRRIMAE 71
>LIAR_BACSU (O32197) Sensory transduction protein liaR| Length = 211 Score = 45.8 bits (107), Expect = 9e-05 Identities = 41/116 (35%), Positives = 55/116 (47%), Gaps = 15/116 (12%) Frame = -2 Query: 501 AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASDR 322 A DG+ GV A PD+ILMD+ + MDG EAT+Q+ EL +I LT+ Sbjct: 33 ASDGSEGVRLAVELSPDVILMDLVMEGMDGIEATKQICR--ELSDPKIIVLTSFIDDDKV 90 Query: 321 EKAIAAGCDDY---DTKPIEL-----------PRLLSKIA-QLLER*SHRREPWLP 199 I AG Y +K E+ P+L SK+A ++L R H E LP Sbjct: 91 YPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALP 146
>TRPO_PSEAE (P24908) Putative transcriptional regulator| Length = 207 Score = 45.4 bits (106), Expect = 1e-04 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Frame = -2 Query: 525 RKGFEVV-LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIAL 349 R GF +V A +GA + AR++ PDL ++D+ +P +DG E +LK+ T V+ L Sbjct: 23 RDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKS--LKLDTKVLVL 80 Query: 348 TAHAMASDREKAIAAGCDDYDTKPIELPRLL 256 T A + + AG + +K L LL Sbjct: 81 TRQNPAQFAPRCLQAGAMGFVSKRENLSELL 111
>CHEB_METMP (P62647) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 365 Score = 45.1 bits (105), Expect = 1e-04 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Frame = -2 Query: 510 VVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMA 331 V A DG + ++ +P++I MD+ +P+M+G +AT+Q+ A + TP++ L+A Sbjct: 32 VATAKDGKEAFELVKKLEPNVITMDVEMPIMNGIDATKQIMA---YKPTPILMLSAVTKQ 88 Query: 330 SDRE--KAIAAGCDDYDTKP 277 KA+ G D+ KP Sbjct: 89 GSEATLKALDNGAVDFIEKP 108
>CHEB3_PSESM (Q886S8) Chemotaxis response regulator protein-glutamate| methylesterase of group 3 operon (EC 3.1.1.61) Length = 336 Score = 45.1 bits (105), Expect = 1e-04 Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 5/97 (5%) Frame = -2 Query: 504 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTP--VIALTAHAMA 331 +A +GA V + + PDLILMD+ +PVMDG EATR++ A +TP ++ +T Sbjct: 31 VAANGADAVQRSIEQTPDLILMDLIMPVMDGVEATRRIMA-----ETPCAIVIVTVDREQ 85 Query: 330 SDREKAIAAG---CDDYDTKPIELPRLLSKIAQLLER 229 + R A G D DT I P A LL + Sbjct: 86 NMRRVFEAMGHGALDVVDTPAIGGPNPREAAAPLLRK 122
>CHEB3_PSE14 (Q48F23) Chemotaxis response regulator protein-glutamate| methylesterase 3 (EC 3.1.1.61) Length = 336 Score = 45.1 bits (105), Expect = 1e-04 Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 5/97 (5%) Frame = -2 Query: 504 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTP--VIALTAHAMA 331 +A +GA V + PDLILMD+ +PVMDG EATR++ A +TP ++ +T Sbjct: 31 VASNGADAVQRCVEQTPDLILMDLIMPVMDGVEATRRIMA-----ETPCAIVIVTVDREQ 85 Query: 330 SDREKAIAAG---CDDYDTKPIELPRLLSKIAQLLER 229 + R A G D DT I P A LL + Sbjct: 86 NMRRVFEAMGHGALDVVDTPAIGGPNPKEAAAPLLRK 122
>NARP_ECOLI (P31802) Nitrate/nitrite response regulator protein narP| Length = 215 Score = 45.1 bits (105), Expect = 1e-04 Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Frame = -2 Query: 519 GFEVVL-AHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTA 343 G EVV A DGA+ +D A R D+IL+D+++ M G + L+ D Q +I LT Sbjct: 31 GSEVVAEAGDGASAIDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQ--IIILTV 88 Query: 342 HAMASDREKAIAAGCDDYDTKPIELPRLLSKI 247 +SD I AG D Y K + LL I Sbjct: 89 SDASSDVFALIDAGADGYLLKDSDPEVLLEAI 120
>SP0F_BACTK (P52942) Sporulation initiation phosphotransferase F (EC 2.7.-.-)| (Stage 0 sporulation protein F) Length = 122 Score = 45.1 bits (105), Expect = 1e-04 Identities = 27/107 (25%), Positives = 53/107 (49%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGAAGVDTARREQPDLILMDMSLPVMDGWEAT 400 L+V+D +L ++G++ A +G +D +++ PDL+++DM +P MDG E Sbjct: 6 LIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVKKDNPDLVVLDMKIPGMDGIEIF 65 Query: 399 RQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRL 259 + K E VI ++A+ ++A G + KP ++ + Sbjct: 66 KACKEIDE--SIKVILMSAYGELDMIQEAKDLGALMHFAKPFDIDEI 110
>CHEB2_BURS3 (Q393F2) Chemotaxis response regulator protein-glutamate| methylesterase 2 (EC 3.1.1.61) Length = 339 Score = 45.1 bits (105), Expect = 1e-04 Identities = 43/141 (30%), Positives = 61/141 (43%), Gaps = 11/141 (7%) Frame = -2 Query: 504 LAHDGAAGVDTARREQPDLILMDMSLPVMDGWEATRQLKADPELQQTPVIALTAHAMASD 325 +A DG VD PDL+LMD+ +P +DG ATR++ A V A + +S Sbjct: 31 VATDGDEAVDFCVAHPPDLVLMDLVMPKVDGVAATRRIMARAPCAILVVTASVSANTSSV 90 Query: 324 REKAIAAGCDDYDTKPIEL--------PRLLSKIAQLLER*SHRREPWLPP*PSTAMKLR 169 E A D DT + L LL+KI Q+ R +PP P+ R Sbjct: 91 YEAMGAGALDAVDTPTLALGLSTDASPQALLAKIDQIGRLLESRTAALVPPGPAPE---R 147 Query: 168 RQFLLFGVGTTF---TAIAAI 115 Q L +G + TA+ A+ Sbjct: 148 GQPTLVAIGASAGGPTALTAL 168
>DCTR_BACSU (P96602) Probable C4-dicarboxylate response regulator dctR| Length = 226 Score = 44.7 bits (104), Expect = 2e-04 Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 8/115 (6%) Frame = -2 Query: 579 LLVEDN----EDNWDMLSRRLTRKGFEV-VLAHDGAAGVDTARREQPDLILMDMSLPVMD 415 LL+ED+ E N D ++ T KG V A +G G+ + EQPDL+++D+ +P D Sbjct: 9 LLIEDDPMVQEVNKDFIT---TVKGVTVCATAGNGEEGMKLIKEEQPDLVILDVYMPKKD 65 Query: 414 GWEATRQLKADPELQQTPVIALTAHAMASDREK---AIAAGCDDYDTKPIELPRL 259 G + ++++ + + VI ++A A D+E + G DY KP +L R+ Sbjct: 66 GIKTLQEIR--KQKLEVDVIVVSA---AKDKETISLMLQNGAVDYILKPFKLERM 115
>CHEV_BACSU (P37599) Chemotaxis protein cheV| Length = 303 Score = 44.7 bits (104), Expect = 2e-04 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 10/121 (8%) Frame = -2 Query: 579 LLVEDNEDNWDMLSRRLTRKGFEVVLAHDGA----------AGVDTARREQPDLILMDMS 430 ++VED+ +L L G+ + + + A +T +Q D+I+ D+ Sbjct: 178 IIVEDSPLLMRLLQDELKEAGYNNIASFENGKEAYEYIMNLAENETDLSKQIDMIITDIE 237 Query: 429 LPVMDGWEATRQLKADPELQQTPVIALTAHAMASDREKAIAAGCDDYDTKPIELPRLLSK 250 +P MDG T+ LK +P+ PV+ ++ R + G D+ +KP E+ L+ K Sbjct: 238 MPKMDGHRLTKLLKENPKSSDVPVMIFSSLITDDLRHRGEVVGADEQISKP-EISDLIKK 296 Query: 249 I 247 + Sbjct: 297 V 297 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,449,056 Number of Sequences: 219361 Number of extensions: 1761998 Number of successful extensions: 7325 Number of sequences better than 10.0: 485 Number of HSP's better than 10.0 without gapping: 6775 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7145 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
