>POLG_CSFVB (P21530) Genome polyprotein [Contains: N-terminal protease (EC|
            3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein C;
            E(rns) glycoprotein (gp44/48); Envelope glycoprotein E1
            (gp33); Envelope glycoprotein E2 (gp55); p7;
            Nonstructural protein 2
          Length = 3898

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -3

Query: 151  LCPGESLRGDNQW 113
            LCPG SLR DN+W
Sbjct: 3267 LCPGSSLRNDNEW 3279

>HQGT_ARATH (Q9M156) Probable hydroquinone glucosyltransferase (EC 2.4.1.218)|
           (Arbutin synthase)
          Length = 480

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 18/30 (60%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 267 RAVKALMERDSEEGKRAREKPAEMK-AACR 181
           R VK LME   EEGK  R K  E+K AACR
Sbjct: 421 RVVKGLME--GEEGKGVRNKMKELKEAACR 448

>CD5_RAT (P51882) T-cell surface glycoprotein CD5 precursor (Lymphocyte|
           antigen Ly-1) (Lyt-1)
          Length = 491

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = -3

Query: 187 VQEARRGGRVLLLCPGESLRGDNQWSELVIRECQGVVVAGXXXXXXXXSFRVLCRHREQS 8
           + E R+  +   LC   + RG  +W EL   +  G +++         S  VLC   + S
Sbjct: 286 IAEVRQRSQWAALCDSSAARGPGRWEELCQEQQCGNLISFHVMDADRTSPGVLCTQEKLS 345

Query: 7   AC 2
            C
Sbjct: 346 QC 347

>TR240_HUMAN (Q9UHV7) Thyroid hormone receptor-associated protein complex 240|
           kDa component (Trap240) (Thyroid hormone
           receptor-associated protein 1) (Vitamin D3
           receptor-interacting protein complex component DRIP250)
           (DRIP 250) (Activator-recruited cofac
          Length = 2174

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 24  RHKTRNDQQEEQELQPATTTPWHSRITNS 110
           +HKT   Q++ +E Q    TP+H R++ S
Sbjct: 455 KHKTNEKQEKSEEPQKRPLTPFHHRVSVS 483

>Y413_MYCPN (Q9EXD6) Hypothetical protein MPN413 (A05_orf139)|
          Length = 139

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 63  LQPATTTPWHS-RITNSLH*LSPRRDSPGQSRRTRPPRR 176
           + P+   P+    I   LH + P++ SP  S   +PPRR
Sbjct: 64  IPPSPNKPYSKLAINQELHLIPPKKTSPATSSSLKPPRR 102

>CCD45_HUMAN (Q96GE4) Coiled-coil domain-containing protein 45|
          Length = 821

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 27  HKTRNDQQEEQELQPATTTPWHSRITNSLH*LSPRRDSPGQSRRTRPPRRA 179
           HK  N   EE E     T   HS   + +    P++  PG S R +PP R+
Sbjct: 400 HKEENTGNEEVEDGTEETLSQHS---DGIVEYGPKKSRPGLSMRRKPPYRS 447

>MSH6_SCHPO (O74502) DNA mismatch repair protein msh6|
          Length = 1254

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
 Frame = +3

Query: 15  SRCRHKTRNDQQEEQELQPATTTPWHSRITNSLH*LSPRR-------DSPGQSRRT 161
           S   H           L P ++ P+ S +++SLH  SP+R       +SPG+  RT
Sbjct: 80  SPSHHANTEIDSSSSMLPPPSSDPFSSPLSSSLHRSSPKRPHDSLGEESPGKLLRT 135

>TPIS_BARHE (Q8L1Z5) Triosephosphate isomerase (EC 5.3.1.1) (TIM)|
           (Triose-phosphate isomerase)
          Length = 254

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -3

Query: 187 VQEARRGGRVLLLCPGESL--RGDNQWSELVIRECQGVVVAG 68
           VQ A R G V L+C GE+L  R  N+  +++ R+ +G +  G
Sbjct: 117 VQAAWRAGLVALICVGETLEERKSNKVLDVLTRQLEGSLPDG 158


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,534,005
Number of Sequences: 219361
Number of extensions: 589677
Number of successful extensions: 1793
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1793
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)