ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart14b09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_186324.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1688 Score = 69.9 bits (35), Expect = 4e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 |||||||||||||| |||| |||||||||||| || ||| |||||||| |||||||||| Sbjct: 1440 gacccgccctcctccacggccttcctgcacgccgcgctcacctccgcggccttctccctc 1381 Query: 218 gcc 220 ||| Sbjct: 1380 gcc 1378
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 69.9 bits (35), Expect = 4e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 |||||||||||||| |||| |||||||||||| || ||| |||||||| |||||||||| Sbjct: 22545516 gacccgccctcctccacggccttcctgcacgccgcgctcacctccgcggccttctccctc 22545457 Query: 218 gcc 220 ||| Sbjct: 22545456 gcc 22545454 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 191 gccttcatctccgcgggcttctccctcgccctcttcccctcctc 234 |||||||||||||| | ||||||||||||| ||||||||||||| Sbjct: 18985762 gccttcatctccgccgccttctccctcgccttcttcccctcctc 18985719 Score = 60.0 bits (30), Expect = 4e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 |||||||||| |||||||| ||||| |||||| ||||||| || ||| |||||||||| Sbjct: 19409074 gacccgcccttctcgacggccttccggcacgccgccttcacggccacggccttctccctc 19409133 Query: 218 gccctcttcccctcctcg 235 ||| || ||||| ||||| Sbjct: 19409134 gccttcctccccgcctcg 19409151 Score = 50.1 bits (25), Expect = 0.004 Identities = 64/77 (83%) Strand = Plus / Minus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 ||||| |||||||| || | ||||| |||| | |||||||||||||| | ||||||||| Sbjct: 18993665 gacccaccctcctccacagccttccggcacacggccttcatctccgccgccttctccctt 18993606 Query: 218 gccctcttcccctcctc 234 ||| || |||| ||||| Sbjct: 18993605 gccttcctcccttcctc 18993589 Score = 44.1 bits (22), Expect = 0.23 Identities = 61/74 (82%) Strand = Plus / Plus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 |||||||||||||| |||| ||||| ||| | ||| || ||||||| | |||| ||||| Sbjct: 19401159 gacccgccctcctccacggccttccggcaaacggccctcgtctccgccgccttcgccctc 19401218 Query: 218 gccctcttcccctc 231 ||| || ||||||| Sbjct: 19401219 gccttcctcccctc 19401232 Score = 40.1 bits (20), Expect = 3.6 Identities = 47/56 (83%) Strand = Plus / Minus Query: 179 ttcctgcacgctgccttcatctccgcgggcttctccctcgccctcttcccctcctc 234 |||| |||||| |||||| | |||| | ||||||||||||| || |||||||||| Sbjct: 19008643 ttccggcacgccgccttcgccgccgccgccttctccctcgccatcctcccctcctc 19008588 Score = 40.1 bits (20), Expect = 3.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 191 gccttcatctccgcgggcttctccctcgccctcttcccctcctc 234 |||||||||||||| | |||||||||| || || ||||| |||| Sbjct: 18954618 gccttcatctccgccgccttctccctcaccttcctccccacctc 18954661 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 211 ctccctcgccctcttcccctcctc 234 |||||||| ||||||||||||||| Sbjct: 5164968 ctccctcgacctcttcccctcctc 5164945
>dbj|AP005296.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1720_F04 Length = 105227 Score = 69.9 bits (35), Expect = 4e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 |||||||||||||| |||| |||||||||||| || ||| |||||||| |||||||||| Sbjct: 89004 gacccgccctcctccacggccttcctgcacgccgcgctcacctccgcggccttctccctc 88945 Query: 218 gcc 220 ||| Sbjct: 88944 gcc 88942
>dbj|AP003705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1112_E08 Length = 119926 Score = 69.9 bits (35), Expect = 4e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 |||||||||||||| |||| |||||||||||| || ||| |||||||| |||||||||| Sbjct: 25898 gacccgccctcctccacggccttcctgcacgccgcgctcacctccgcggccttctccctc 25839 Query: 218 gcc 220 ||| Sbjct: 25838 gcc 25836
>dbj|AK107291.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-B11, full insert sequence Length = 1688 Score = 69.9 bits (35), Expect = 4e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 |||||||||||||| |||| |||||||||||| || ||| |||||||| |||||||||| Sbjct: 1440 gacccgccctcctccacggccttcctgcacgccgcgctcacctccgcggccttctccctc 1381 Query: 218 gcc 220 ||| Sbjct: 1380 gcc 1378
>ref|XM_478278.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1641 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 191 gccttcatctccgcgggcttctccctcgccctcttcccctcctc 234 |||||||||||||| | ||||||||||||| ||||||||||||| Sbjct: 129 gccttcatctccgccgccttctccctcgccttcttcccctcctc 172
>ref|XM_507364.1| PREDICTED Oryza sativa (japonica cultivar-group), P0430F03.25 mRNA Length = 1747 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 191 gccttcatctccgcgggcttctccctcgccctcttcccctcctc 234 |||||||||||||| | ||||||||||||| ||||||||||||| Sbjct: 230 gccttcatctccgccgccttctccctcgccttcttcccctcctc 273
>ref|XM_506357.2| PREDICTED Oryza sativa (japonica cultivar-group), P0430F03.25 mRNA Length = 1790 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 191 gccttcatctccgcgggcttctccctcgccctcttcccctcctc 234 |||||||||||||| | ||||||||||||| ||||||||||||| Sbjct: 186 gccttcatctccgccgccttctccctcgccttcttcccctcctc 229
>ref|XM_478277.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1686 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 191 gccttcatctccgcgggcttctccctcgccctcttcccctcctc 234 |||||||||||||| | ||||||||||||| ||||||||||||| Sbjct: 1421 gccttcatctccgccgccttctccctcgccttcttcccctcctc 1378
>ref|XM_506356.1| PREDICTED Oryza sativa (japonica cultivar-group), P0430F03.24 mRNA Length = 1709 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 191 gccttcatctccgcgggcttctccctcgccctcttcccctcctc 234 |||||||||||||| | ||||||||||||| ||||||||||||| Sbjct: 1451 gccttcatctccgccgccttctccctcgccttcttcccctcctc 1408
>dbj|AP005186.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0430F03 Length = 183095 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 191 gccttcatctccgcgggcttctccctcgccctcttcccctcctc 234 |||||||||||||| | ||||||||||||| ||||||||||||| Sbjct: 87747 gccttcatctccgccgccttctccctcgccttcttcccctcctc 87704 Score = 50.1 bits (25), Expect = 0.004 Identities = 64/77 (83%) Strand = Plus / Minus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 ||||| |||||||| || | ||||| |||| | |||||||||||||| | ||||||||| Sbjct: 95650 gacccaccctcctccacagccttccggcacacggccttcatctccgccgccttctccctt 95591 Query: 218 gccctcttcccctcctc 234 ||| || |||| ||||| Sbjct: 95590 gccttcctcccttcctc 95574 Score = 40.1 bits (20), Expect = 3.6 Identities = 47/56 (83%) Strand = Plus / Minus Query: 179 ttcctgcacgctgccttcatctccgcgggcttctccctcgccctcttcccctcctc 234 |||| |||||| |||||| | |||| | ||||||||||||| || |||||||||| Sbjct: 110628 ttccggcacgccgccttcgccgccgccgccttctccctcgccatcctcccctcctc 110573 Score = 40.1 bits (20), Expect = 3.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 191 gccttcatctccgcgggcttctccctcgccctcttcccctcctc 234 |||||||||||||| | |||||||||| || || ||||| |||| Sbjct: 56603 gccttcatctccgccgccttctccctcaccttcctccccacctc 56646
>dbj|AK106005.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-A05, full insert sequence Length = 1686 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 191 gccttcatctccgcgggcttctccctcgccctcttcccctcctc 234 |||||||||||||| | ||||||||||||| ||||||||||||| Sbjct: 1421 gccttcatctccgccgccttctccctcgccttcttcccctcctc 1378
>dbj|AK105785.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G10, full insert sequence Length = 1709 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 191 gccttcatctccgcgggcttctccctcgccctcttcccctcctc 234 |||||||||||||| | ||||||||||||| ||||||||||||| Sbjct: 1451 gccttcatctccgccgccttctccctcgccttcttcccctcctc 1408
>dbj|AK101518.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046I03, full insert sequence Length = 1790 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 191 gccttcatctccgcgggcttctccctcgccctcttcccctcctc 234 |||||||||||||| | ||||||||||||| ||||||||||||| Sbjct: 185 gccttcatctccgccgccttctccctcgccttcttcccctcctc 228
>dbj|AK099344.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028A15, full insert sequence Length = 1640 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 191 gccttcatctccgcgggcttctccctcgccctcttcccctcctc 234 |||||||||||||| | ||||||||||||| ||||||||||||| Sbjct: 128 gccttcatctccgccgccttctccctcgccttcttcccctcctc 171
>dbj|AK064324.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-F04, full insert sequence Length = 1747 Score = 63.9 bits (32), Expect = 2e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 191 gccttcatctccgcgggcttctccctcgccctcttcccctcctc 234 |||||||||||||| | ||||||||||||| ||||||||||||| Sbjct: 230 gccttcatctccgccgccttctccctcgccttcttcccctcctc 273
>ref|XM_478349.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1639 Score = 60.0 bits (30), Expect = 4e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 |||||||||| |||||||| ||||| |||||| ||||||| || ||| |||||||||| Sbjct: 58 gacccgcccttctcgacggccttccggcacgccgccttcacggccacggccttctccctc 117 Query: 218 gccctcttcccctcctcg 235 ||| || ||||| ||||| Sbjct: 118 gccttcctccccgcctcg 135
>ref|XM_478348.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1914 Score = 60.0 bits (30), Expect = 4e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 |||||||||| |||||||| ||||| |||||| ||||||| || ||| |||||||||| Sbjct: 1610 gacccgcccttctcgacggccttccggcacgccgccttcacggccacggccttctccctc 1551 Query: 218 gccctcttcccctcctcg 235 ||| || ||||| ||||| Sbjct: 1550 gccttcctccccgcctcg 1533
>dbj|AP005185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0409B11 Length = 168354 Score = 60.0 bits (30), Expect = 4e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 |||||||||| |||||||| ||||| |||||| ||||||| || ||| |||||||||| Sbjct: 98612 gacccgcccttctcgacggccttccggcacgccgccttcacggccacggccttctccctc 98671 Query: 218 gccctcttcccctcctcg 235 ||| || ||||| ||||| Sbjct: 98672 gccttcctccccgcctcg 98689 Score = 44.1 bits (22), Expect = 0.23 Identities = 61/74 (82%) Strand = Plus / Plus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 |||||||||||||| |||| ||||| ||| | ||| || ||||||| | |||| ||||| Sbjct: 90697 gacccgccctcctccacggccttccggcaaacggccctcgtctccgccgccttcgccctc 90756 Query: 218 gccctcttcccctc 231 ||| || ||||||| Sbjct: 90757 gccttcctcccctc 90770
>dbj|AK068586.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154E03, full insert sequence Length = 1914 Score = 60.0 bits (30), Expect = 4e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 |||||||||| |||||||| ||||| |||||| ||||||| || ||| |||||||||| Sbjct: 1609 gacccgcccttctcgacggccttccggcacgccgccttcacggccacggccttctccctc 1550 Query: 218 gccctcttcccctcctcg 235 ||| || ||||| ||||| Sbjct: 1549 gccttcctccccgcctcg 1532
>ref|XM_478280.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1501 Score = 50.1 bits (25), Expect = 0.004 Identities = 64/77 (83%) Strand = Plus / Minus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 ||||| |||||||| || | ||||| |||| | |||||||||||||| | ||||||||| Sbjct: 1414 gacccaccctcctccacagccttccggcacacggccttcatctccgccgccttctccctt 1355 Query: 218 gccctcttcccctcctc 234 ||| || |||| ||||| Sbjct: 1354 gccttcctcccttcctc 1338
>dbj|AK067710.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120G17, full insert sequence Length = 2031 Score = 50.1 bits (25), Expect = 0.004 Identities = 64/77 (83%) Strand = Plus / Minus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 ||||| |||||||| || | ||||| |||| | |||||||||||||| | ||||||||| Sbjct: 1338 gacccaccctcctccacagccttccggcacacggccttcatctccgccgccttctccctt 1279 Query: 218 gccctcttcccctcctc 234 ||| || |||| ||||| Sbjct: 1278 gccttcctcccttcctc 1262
>dbj|AK059016.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-A10, full insert sequence Length = 1501 Score = 50.1 bits (25), Expect = 0.004 Identities = 64/77 (83%) Strand = Plus / Minus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 ||||| |||||||| || | ||||| |||| | |||||||||||||| | ||||||||| Sbjct: 1414 gacccaccctcctccacagccttccggcacacggccttcatctccgccgccttctccctt 1355 Query: 218 gccctcttcccctcctc 234 ||| || |||| ||||| Sbjct: 1354 gccttcctcccttcctc 1338
>ref|XM_478346.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1599 Score = 44.1 bits (22), Expect = 0.23 Identities = 61/74 (82%) Strand = Plus / Minus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 |||||||||||||| |||| ||||| ||| | ||| || ||||||| | |||| ||||| Sbjct: 1387 gacccgccctcctccacggccttccggcaaacggccctcgtctccgccgccttcgccctc 1328 Query: 218 gccctcttcccctc 231 ||| || ||||||| Sbjct: 1327 gccttcctcccctc 1314
>ref|XM_506362.1| PREDICTED Oryza sativa (japonica cultivar-group), P0409B11.19 mRNA Length = 1645 Score = 44.1 bits (22), Expect = 0.23 Identities = 61/74 (82%) Strand = Plus / Minus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 |||||||||||||| |||| ||||| ||| | ||| || ||||||| | |||| ||||| Sbjct: 1433 gacccgccctcctccacggccttccggcaaacggccctcgtctccgccgccttcgccctc 1374 Query: 218 gccctcttcccctc 231 ||| || ||||||| Sbjct: 1373 gccttcctcccctc 1360
>gb|AC068765.16| Homo sapiens 3 BAC RP11-115H18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 151482 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 208 cttctccctcgccctcttcccc 229 |||||||||||||||||||||| Sbjct: 67619 cttctccctcgccctcttcccc 67640
>dbj|AK119544.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-H01, full insert sequence Length = 1645 Score = 44.1 bits (22), Expect = 0.23 Identities = 61/74 (82%) Strand = Plus / Minus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 |||||||||||||| |||| ||||| ||| | ||| || ||||||| | |||| ||||| Sbjct: 1433 gacccgccctcctccacggccttccggcaaacggccctcgtctccgccgccttcgccctc 1374 Query: 218 gccctcttcccctc 231 ||| || ||||||| Sbjct: 1373 gccttcctcccctc 1360
>dbj|AK105912.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-G12, full insert sequence Length = 1645 Score = 44.1 bits (22), Expect = 0.23 Identities = 61/74 (82%) Strand = Plus / Minus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 |||||||||||||| |||| ||||| ||| | ||| || ||||||| | |||| ||||| Sbjct: 1433 gacccgccctcctccacggccttccggcaaacggccctcgtctccgccgccttcgccctc 1374 Query: 218 gccctcttcccctc 231 ||| || ||||||| Sbjct: 1373 gccttcctcccctc 1360
>dbj|AK065987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044P16, full insert sequence Length = 1599 Score = 44.1 bits (22), Expect = 0.23 Identities = 61/74 (82%) Strand = Plus / Minus Query: 158 gacccgccctcctcgacgggcttcctgcacgctgccttcatctccgcgggcttctccctc 217 |||||||||||||| |||| ||||| ||| | ||| || ||||||| | |||| ||||| Sbjct: 1387 gacccgccctcctccacggccttccggcaaacggccctcgtctccgccgccttcgccctc 1328 Query: 218 gccctcttcccctc 231 ||| || ||||||| Sbjct: 1327 gccttcctcccctc 1314
>ref|XM_518032.1| PREDICTED: Pan troglodytes KIAA0194 protein (LOC462186), mRNA Length = 4059 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 cttcccctcctcggagtcgcg 243 ||||||||||||||||||||| Sbjct: 513 cttcccctcctcggagtcgcg 493
>gb|AC091478.6| Mus musculus chromosome 3, clone RP23-469J3, complete sequence Length = 253738 Score = 42.1 bits (21), Expect = 0.90 Identities = 24/25 (96%) Strand = Plus / Plus Query: 208 cttctccctcgccctcttcccctcc 232 ||||||||||||||||| ||||||| Sbjct: 109609 cttctccctcgccctctccccctcc 109633
>ref|XM_590251.2| PREDICTED: Bos taurus similar to Olfactory receptor 7A2 (LOC512689), mRNA Length = 1161 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 gaagaacaagaactgcagcct 71 ||||||||||||||||||||| Sbjct: 112 gaagaacaagaactgcagcct 132
>gb|AC122899.2| Mus musculus BAC clone RP23-74L7 from 3, complete sequence Length = 214857 Score = 42.1 bits (21), Expect = 0.90 Identities = 24/25 (96%) Strand = Plus / Plus Query: 208 cttctccctcgccctcttcccctcc 232 ||||||||||||||||| ||||||| Sbjct: 146247 cttctccctcgccctctccccctcc 146271
>dbj|AK096325.1| Homo sapiens cDNA FLJ39006 fis, clone NT2RI2024971 Length = 2413 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 cttcccctcctcggagtcgcg 243 ||||||||||||||||||||| Sbjct: 230 cttcccctcctcggagtcgcg 250
>gb|AC011406.5| Homo sapiens chromosome 5 clone CTB-46E9, complete sequence Length = 89012 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 cttcccctcctcggagtcgcg 243 ||||||||||||||||||||| Sbjct: 51886 cttcccctcctcggagtcgcg 51906
>ref|XM_940209.1| PREDICTED: Homo sapiens KIAA0194 protein (KIAA0194), mRNA Length = 5724 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 cttcccctcctcggagtcgcg 243 ||||||||||||||||||||| Sbjct: 495 cttcccctcctcggagtcgcg 475
>gb|BC051025.1| Homo sapiens KIAA0194 protein, mRNA (cDNA clone IMAGE:4914524), partial cds Length = 5272 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 cttcccctcctcggagtcgcg 243 ||||||||||||||||||||| Sbjct: 199 cttcccctcctcggagtcgcg 179
>dbj|D83778.1| Human mRNA for KIAA0194 gene, partial cds Length = 5245 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 cttcccctcctcggagtcgcg 243 ||||||||||||||||||||| Sbjct: 188 cttcccctcctcggagtcgcg 168
>ref|XM_478273.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1464 Score = 40.1 bits (20), Expect = 3.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 191 gccttcatctccgcgggcttctccctcgccctcttcccctcctc 234 |||||||||||||| | |||||||||| || || ||||| |||| Sbjct: 1361 gccttcatctccgccgccttctccctcaccttcctccccacctc 1318
>ref|XM_478285.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1785 Score = 40.1 bits (20), Expect = 3.6 Identities = 47/56 (83%) Strand = Plus / Minus Query: 179 ttcctgcacgctgccttcatctccgcgggcttctccctcgccctcttcccctcctc 234 |||| |||||| |||||| | |||| | ||||||||||||| || |||||||||| Sbjct: 1461 ttccggcacgccgccttcgccgccgccgccttctccctcgccatcctcccctcctc 1406
>ref|XM_476977.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2439 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 ctccctcgccctcttcccctcctc 234 |||||||| ||||||||||||||| Sbjct: 150 ctccctcgacctcttcccctcctc 173
>ref|XM_506213.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1715_A07.12 mRNA Length = 2443 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 ctccctcgccctcttcccctcctc 234 |||||||| ||||||||||||||| Sbjct: 154 ctccctcgacctcttcccctcctc 177
>ref|XM_367611.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG07522.4) partial mRNA Length = 2004 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 gcgccttcacggcccgctcc 271 |||||||||||||||||||| Sbjct: 482 gcgccttcacggcccgctcc 501
>emb|AJ012166.1|CFA012166 Canis familiaris TCTA gene, AMT gene, NICN1 gene, DAG1 gene and BSN gene (partial) Length = 162073 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 gcttctccctcgccctcttcccct 230 ||||||||||| |||||||||||| Sbjct: 45428 gcttctccctctccctcttcccct 45451
>ref|XM_538874.2| PREDICTED: Canis familiaris similar to signal peptide, CUB domain, EGF-like 3 (LOC481753), mRNA Length = 3848 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 gccttcacggcccgctccag 273 |||||||||||||||||||| Sbjct: 2704 gccttcacggcccgctccag 2723
>gb|AC127681.4| Mus musculus BAC clone RP24-164P24 from chromosome 3, complete sequence Length = 175131 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 tctccctcgccctcttcccctcct 233 |||||||| ||||||||||||||| Sbjct: 102927 tctccctcaccctcttcccctcct 102950
>gb|AC122414.4| Mus musculus BAC clone RP24-150D8 from chromosome 5, complete sequence Length = 186986 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 211 ctccctcgccctcttcccctcctc 234 ||||||| |||||||||||||||| Sbjct: 130781 ctccctccccctcttcccctcctc 130758
>gb|AC132464.3| Mus musculus BAC clone RP23-53K19 from chromosome 18, complete sequence Length = 175801 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 gcttctccctcgccctcttcccct 230 ||||||||||| |||||||||||| Sbjct: 118415 gcttctccctctccctcttcccct 118392
>gb|AC115119.5| Mus musculus BAC clone RP23-87M19 from 18, complete sequence Length = 174491 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 tctccctcgccctcttcccctcct 233 |||||||| ||||||||||||||| Sbjct: 29564 tctccctctccctcttcccctcct 29587
>gb|AC098745.4| Mus musculus BAC clone RP23-122P16 from 18, complete sequence Length = 213331 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 gcttctccctcgccctcttcccct 230 ||||||||||| |||||||||||| Sbjct: 16910 gcttctccctctccctcttcccct 16887
>gb|AC092729.3| Canis familiaris clone RP81-60B6, complete sequence Length = 165116 Score = 40.1 bits (20), Expect = 3.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 207 gcttctccctcgccctcttcccctcctc 234 |||||||||||||||||| |||||||| Sbjct: 96128 gcttctccctcgccctctgtccctcctc 96155 Score = 40.1 bits (20), Expect = 3.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 207 gcttctccctcgccctcttcccctcctc 234 ||||||||||| |||||| ||||||||| Sbjct: 77871 gcttctccctctccctctgcccctcctc 77898
>emb|Z95889.1|HS211A9 Human DNA sequence from clone CTA-211A9 on chromosome 22q12.1, complete sequence Length = 117939 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 cttctccctcgccctcttcccctc 231 |||||||||| ||||||||||||| Sbjct: 31442 cttctccctctccctcttcccctc 31465
>emb|AL954650.8| Human DNA sequence from clone RP11-523M19 on chromosome 1, complete sequence Length = 86257 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 ggagagactccccagggcagagta 153 ||||||||||||||| |||||||| Sbjct: 39529 ggagagactccccagtgcagagta 39506
>gb|AC164578.5| Mus musculus BAC RP23-15E20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 225564 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 cttctccctcgccctcttcccctc 231 |||||||||| ||||||||||||| Sbjct: 99256 cttctccctctccctcttcccctc 99279
>gb|AF408843.1| Triticum aestivum sucrose transporter SUT1B mRNA, complete cds Length = 2021 Score = 40.1 bits (20), Expect = 3.6 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 210 tctccctcgccctcttc-ccctcctcggagtc 240 ||||||||||||||||| || ||||||||||| Sbjct: 1373 tctccctcgccctcttcgccttcctcggagtc 1404
>gb|AC019270.12| Homo sapiens chromosome 8, clone RP11-10C8, complete sequence Length = 154957 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 gatcagcaggaagaacaaga 61 |||||||||||||||||||| Sbjct: 91246 gatcagcaggaagaacaaga 91227
>gb|AC022844.8| Homo sapiens chromosome 8, clone RP11-250P18, complete sequence Length = 171732 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 gatcagcaggaagaacaaga 61 |||||||||||||||||||| Sbjct: 148975 gatcagcaggaagaacaaga 148994
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 3.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 238 gtcgcgctccatgagcgccttcacggcc 265 |||||||||||||| | ||||||||||| Sbjct: 3990272 gtcgcgctccatgaactccttcacggcc 3990299
>dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1715_A07 Length = 130907 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 211 ctccctcgccctcttcccctcctc 234 |||||||| ||||||||||||||| Sbjct: 31682 ctccctcgacctcttcccctcctc 31659
>emb|AL672230.6| Mouse DNA sequence from clone RP23-56L5 on chromosome X, complete sequence Length = 226781 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 aactgcagcctgcaaccaca 80 |||||||||||||||||||| Sbjct: 12855 aactgcagcctgcaaccaca 12836
>dbj|AK105261.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-A09, full insert sequence Length = 1785 Score = 40.1 bits (20), Expect = 3.6 Identities = 47/56 (83%) Strand = Plus / Minus Query: 179 ttcctgcacgctgccttcatctccgcgggcttctccctcgccctcttcccctcctc 234 |||| |||||| |||||| | |||| | ||||||||||||| || |||||||||| Sbjct: 1461 ttccggcacgccgccttcgccgccgccgccttctccctcgccatcctcccctcctc 1406
>dbj|AK101244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032A07, full insert sequence Length = 2439 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 ctccctcgccctcttcccctcctc 234 |||||||| ||||||||||||||| Sbjct: 150 ctccctcgacctcttcccctcctc 173
>dbj|AK100100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004E20, full insert sequence Length = 2443 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 ctccctcgccctcttcccctcctc 234 |||||||| ||||||||||||||| Sbjct: 154 ctccctcgacctcttcccctcctc 177
>gb|AC147219.5| Mus musculus BAC clone RP23-37K18 from 18, complete sequence Length = 183177 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 tctccctcgccctcttcccctcct 233 |||||||| ||||||||||||||| Sbjct: 14386 tctccctctccctcttcccctcct 14363
>gb|AC110091.4| Mus musculus BAC clone RP24-87K15 from 9, complete sequence Length = 222792 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 209 ttctccctcgccctcttcccctcc 232 ||||||||| |||||||||||||| Sbjct: 158522 ttctccctctccctcttcccctcc 158545
>dbj|AP003732.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-682D22, complete sequence Length = 193132 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 206 ggcttctccctcgccctcttcccc 229 |||||||||||| ||||||||||| Sbjct: 54123 ggcttctccctctccctcttcccc 54100 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,970,462 Number of Sequences: 3902068 Number of extensions: 1970462 Number of successful extensions: 41912 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 41738 Number of HSP's gapped (non-prelim): 176 length of query: 273 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 251 effective length of database: 17,147,199,772 effective search space: 4303947142772 effective search space used: 4303947142772 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
