Clone Name | rbart13h09 |
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Clone Library Name | barley_pub |
>gb|AY543544.1| Triticum aestivum expansin EXPB10 mRNA, complete cds Length = 1132 Score = 283 bits (143), Expect = 2e-73 Identities = 224/251 (89%) Strand = Plus / Minus Query: 203 tagtacctagcaataacttaaaatccttcgatcctcgtaaatagggaacctccagatgac 262 |||| ||| |||||||||||||| | || ||||||| ||||||||| | | | |||||| Sbjct: 945 tagtgcctggcaataacttaaaaccattagatcctcacaaatagggatcatgctgatgac 886 Query: 263 accaaaatgattaactcggcatcgatcggagaagtgctcaggtaagccaatcaatagaac 322 ||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| Sbjct: 885 accaaaatgattaactcggcatcgatcggagaagtacgcacgtaagccaatcaatagaac 826 Query: 323 tggatgttagaccagtaggctttggcctgctgccaatatgccgggatggcattgttggcc 382 |||| ||| ||||||||||| | | || |||||||||| ||||||||||||||||||||| Sbjct: 825 tggaggttggaccagtaggcatggtccggctgccaataagccgggatggcattgttggcc 766 Query: 383 accagcatctttccggtgtcggtggcgatgcgtatggagaatggcccctgcagcgggcgg 442 |||||| |||||||||| ||| ||| |||||| |||| |||||||||||||||||||||| Sbjct: 765 accagcgtctttccggtatcgctggtgatgcggatggcgaatggcccctgcagcgggcgg 706 Query: 443 ttggtgtccat 453 ||||||||||| Sbjct: 705 ttggtgtccat 695 Score = 89.7 bits (45), Expect = 7e-15 Identities = 70/77 (90%), Gaps = 6/77 (7%) Strand = Plus / Minus Query: 55 atcaggtatggaactg--atagtggccggggtagcacatggacggatgctactccacttg 112 |||||| ||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct: 1132 atcaggcatggaactgcgatagtggccggggtagcacatgga----tgctactccacttg 1077 Query: 113 cctagctccttacattt 129 ||||||||||||||||| Sbjct: 1076 cctagctccttacattt 1060
>gb|U91981.1|TAU91981 Triticum aestivum pollen allergen homolog mRNA, complete cds Length = 1232 Score = 270 bits (136), Expect = 4e-69 Identities = 214/240 (89%) Strand = Plus / Minus Query: 214 aataacttaaaatccttcgatcctcgtaaatagggaacctccagatgacaccaaaatgat 273 |||||||||||||| ||||||| ||||||||||||| | ||| ||||||||||||||||| Sbjct: 964 aataacttaaaatcattcgatcatcgtaaatagggatcatcctgatgacaccaaaatgat 905 Query: 274 taactcggcatcgatcggagaagtgctcaggtaagccaatcaatagaactggatgttaga 333 |||| | ||||||||||||||||| | || |||||| ||||| |||||||||| ||| || Sbjct: 904 taacccagcatcgatcggagaagtacgcacgtaagcaaatcagtagaactggaggttgga 845 Query: 334 ccagtaggctttggcctgctgccaatatgccgggatggcattgttggccaccagcatctt 393 ||| ||||| | | ||||||||||||| |||||||||||||||||||| |||||| |||| Sbjct: 844 ccaataggcatggtcctgctgccaataagccgggatggcattgttggcgaccagcgtctt 785 Query: 394 tccggtgtcggtggcgatgcgtatggagaatggcccctgcagcgggcggttggtgtccat 453 |||||| ||| ||| |||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 784 tccggtatcgctggtgatgcggatggagaatggcccctgcaccgggcggttggtgtccat 725 Score = 119 bits (60), Expect = 8e-24 Identities = 106/120 (88%), Gaps = 6/120 (5%) Strand = Plus / Minus Query: 12 catccatttgaattaatttataatttcgatttgatcacactctatcaggtatggaactg- 70 ||||||||||||||||||||||| | ||| ||||||||| ||||||| ||||||||| Sbjct: 1193 catccatttgaattaatttataagcttaattggatcacactttatcaggcatggaactgc 1134 Query: 71 -atagtggccggggtagcacatggacggatgctactccacttgcctagctccttacattt 129 |||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 1133 gatagtggccggggtagcacatgga----tgatactccacttgcctagctccttacattt 1078
>gb|AY589582.1| Triticum aestivum beta-expansin TaEXPB5 mRNA, complete cds Length = 939 Score = 194 bits (98), Expect = 2e-46 Identities = 137/150 (91%) Strand = Plus / Minus Query: 304 gtaagccaatcaatagaactggatgttagaccagtaggctttggcctgctgccaatatgc 363 ||||||||||||||||||||||| ||| ||||||||||| | | || |||||||||| || Sbjct: 869 gtaagccaatcaatagaactggaggttggaccagtaggcatggtccggctgccaataagc 810 Query: 364 cgggatggcattgttggccaccagcatctttccggtgtcggtggcgatgcgtatggagaa 423 ||||||||||||||||||||||||| |||||||||| ||| ||| |||||| |||| ||| Sbjct: 809 cgggatggcattgttggccaccagcgtctttccggtatcgctggtgatgcggatggcgaa 750 Query: 424 tggcccctgcagcgggcggttggtgtccat 453 |||||||||||||||||||||||||||||| Sbjct: 749 tggcccctgcagcgggcggttggtgtccat 720 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 tcaggacacacaatcgacga 185 |||||||||||||||||||| Sbjct: 928 tcaggacacacaatcgacga 909
>gb|AY543542.1| Triticum aestivum expansin EXPB8 mRNA, complete cds Length = 1078 Score = 125 bits (63), Expect = 1e-25 Identities = 123/143 (86%) Strand = Plus / Minus Query: 311 aatcaatagaactggatgttagaccagtaggctttggcctgctgccaatatgccgggatg 370 |||||||||||||||| ||| |||||||| || ||| || || |||| || ||||||||| Sbjct: 845 aatcaatagaactggacgttggaccagtaagcattgtccggccgccagtacgccgggatg 786 Query: 371 gcattgttggccaccagcatctttccggtgtcggtggcgatgcgtatggagaatggcccc 430 ||||||||||||| ||| |||| |||| |||| ||| ||| || |||||||| |||||| Sbjct: 785 acattgttggccacaagcgtcttcccggagtcgctggtgatacgcatggagaagggcccc 726 Query: 431 tgcagcgggcggttggtgtccat 453 |||||||||||| |||||||||| Sbjct: 725 tgcagcgggcggctggtgtccat 703
>gb|AY589580.1| Triticum aestivum beta-expansin TaEXPB3 mRNA, complete cds Length = 1013 Score = 79.8 bits (40), Expect = 7e-12 Identities = 79/92 (85%) Strand = Plus / Minus Query: 362 gccgggatggcattgttggccaccagcatctttccggtgtcggtggcgatgcgtatggag 421 ||||||||| ||||||||||||||||| |||| |||| |||| ||| |||||| |||||| Sbjct: 810 gccgggatgacattgttggccaccagcttcttgccggagtcgctggtgatgcgcatggag 751 Query: 422 aatggcccctgcagcgggcggttggtgtccat 453 || |||||||| || || |||||| |||||| Sbjct: 750 aagggcccctggaggcggtggttggagtccat 719
>gb|AY543541.1| Triticum aestivum expansin EXPB7 mRNA, complete cds Length = 1056 Score = 79.8 bits (40), Expect = 7e-12 Identities = 79/92 (85%) Strand = Plus / Minus Query: 362 gccgggatggcattgttggccaccagcatctttccggtgtcggtggcgatgcgtatggag 421 ||||||||| ||||||||||||||||| |||| |||| |||| ||| |||||| |||||| Sbjct: 842 gccgggatgacattgttggccaccagcttcttgccggagtcgctggtgatgcgcatggag 783 Query: 422 aatggcccctgcagcgggcggttggtgtccat 453 || |||||||| || || |||||| |||||| Sbjct: 782 aagggcccctggaggcggtggttggagtccat 751
>gb|AF261275.1| Oryza sativa beta-expansin (EXPB7) mRNA, complete cds Length = 1210 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 409 gatgcgtatggagaatggcccctgcagcgggcggttggtgtcca 452 |||||| | |||||| ||||||||||||||| |||||||||||| Sbjct: 938 gatgcggagggagaagggcccctgcagcgggtggttggtgtcca 895
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 409 gatgcgtatggagaatggcccctgcagcgggcggttggtgtcca 452 |||||| | |||||| ||||||||||||||| |||||||||||| Sbjct: 169334 gatgcggagggagaagggcccctgcagcgggtggttggtgtcca 169291
>gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0080O10, from chromosome 3, complete sequence Length = 127917 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 409 gatgcgtatggagaatggcccctgcagcgggcggttggtgtcca 452 |||||| | |||||| ||||||||||||||| |||||||||||| Sbjct: 6401 gatgcggagggagaagggcccctgcagcgggtggttggtgtcca 6358
>gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0079B22, from chromosome 3, complete sequence Length = 156933 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 409 gatgcgtatggagaatggcccctgcagcgggcggttggtgtcca 452 |||||| | |||||| ||||||||||||||| |||||||||||| Sbjct: 103334 gatgcggagggagaagggcccctgcagcgggtggttggtgtcca 103291
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 409 gatgcgtatggagaatggcccctgcagcgggcggttggtgtcca 452 |||||| | |||||| ||||||||||||||| |||||||||||| Sbjct: 169334 gatgcggagggagaagggcccctgcagcgggtggttggtgtcca 169291
>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence Length = 162241 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 409 gatgcgtatggagaatggcccctgcagcgggcggttggtgtcca 452 |||||| | |||||| ||||||||||||||| |||||||||||| Sbjct: 93332 gatgcggagggagaagggcccctgcagcgggtggttggtgtcca 93375
>dbj|AK061423.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G02, full insert sequence Length = 1027 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 409 gatgcgtatggagaatggcccctgcagcgggcggttggtgtcca 452 |||||| | |||||| ||||||||||||||| |||||||||||| Sbjct: 746 gatgcggagggagaagggcccctgcagcgggtggttggtgtcca 703
>emb|AJ295940.1|FPR295940 Festuca pratensis mRNA for beta expansin B1 (expB1 gene) Length = 1224 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Minus Query: 302 aggtaagccaatcaatagaactg 324 ||||||||||||||||||||||| Sbjct: 868 aggtaagccaatcaatagaactg 846
>gb|AC113355.2| Homo sapiens chromosome 5 clone CTD-3007L5, complete sequence Length = 130307 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 catttgaattaatttataatt 36 ||||||||||||||||||||| Sbjct: 119462 catttgaattaatttataatt 119482
>gb|AC022439.5| Homo sapiens chromosome 5 clone RP11-184A13, complete sequence Length = 134576 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 catttgaattaatttataatt 36 ||||||||||||||||||||| Sbjct: 119571 catttgaattaatttataatt 119551
>gb|AF097145.1|AF097145 Omaspides bistriata 12S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 483 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 17 atttgaattaatttataattt 37 ||||||||||||||||||||| Sbjct: 351 atttgaattaatttataattt 331
>emb|AJ295941.1|FPR295941 Festuca pratensis mRNA for beta expansin B2 (expB2 gene) Length = 1194 Score = 40.1 bits (20), Expect = 6.1 Identities = 65/80 (81%) Strand = Plus / Minus Query: 374 ttgttggccaccagcatctttccggtgtcggtggcgatgcgtatggagaatggcccctgc 433 |||||||| || ||| ||| |||| |||| ||| |||||| |||||||||||| |||| Sbjct: 831 ttgttggcgacgagctgcttgccggagtcgctggtgatgcgcatggagaatggcgcctgg 772 Query: 434 agcgggcggttggtgtccat 453 || || |||||| |||||| Sbjct: 771 agacggtggttggagtccat 752
>gb|AC129326.3| Mus musculus BAC clone RP23-326H12 from chromosome 19, complete sequence Length = 184128 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 aaagtagtacctagcaataa 218 |||||||||||||||||||| Sbjct: 18075 aaagtagtacctagcaataa 18056
>gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, complete sequence Length = 218079 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 aaagtagtacctagcaataa 218 |||||||||||||||||||| Sbjct: 117254 aaagtagtacctagcaataa 117235
>emb|CR396587.8| Zebrafish DNA sequence from clone CH211-261P15 in linkage group 16, complete sequence Length = 91165 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 atccatttgaattaatttat 32 |||||||||||||||||||| Sbjct: 67726 atccatttgaattaatttat 67707
>emb|AL033392.5|HS403M6 Human DNA sequence from clone RP3-403M6 on chromosome 6q24.1-25.3 Contains part of the AKAP12 gene for A kinase (PRKA) anchor protein (gravin) 12, complete sequence Length = 86329 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 cttcatccatttgaattaat 28 |||||||||||||||||||| Sbjct: 55823 cttcatccatttgaattaat 55842
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 cctgcagcgggcggttggtg 448 |||||||||||||||||||| Sbjct: 3548740 cctgcagcgggcggttggtg 3548759
>emb|AL137244.28| Human DNA sequence from clone RP11-173B14 on chromosome 13 Contains 2 novel genes, the UCHL3 gene for ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase), the 5' end of the LMO7 gene for LIM domain only 7 (KIAA0858) and 2 CpG islands, complete sequence Length = 183358 Score = 40.1 bits (20), Expect = 6.1 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 13 atccattt-gaattaatttataatttcgattt 43 |||||||| ||||||||||||||||| ||||| Sbjct: 90495 atccatttagaattaatttataattttgattt 90526
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 ttataatttcgatttgatca 48 |||||||||||||||||||| Sbjct: 41566 ttataatttcgatttgatca 41547
>emb|X01647.1|CHMPTRN Marchantia polymorpha chloroplast DNA for tRNA-Ser(UGA), tRNA-Gly(GCC), tRNA-Met(CAU), ORF701, ORF702 and ORF703 Length = 3381 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 ttataatttcgatttgatca 48 |||||||||||||||||||| Sbjct: 1788 ttataatttcgatttgatca 1769
>emb|AL034558.3|PFMAL3P2 Plasmodium falciparum MAL3P2, complete sequence Length = 158548 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 tttgaattaatttataattt 37 |||||||||||||||||||| Sbjct: 141662 tttgaattaatttataattt 141643
>gb|AC104510.6| Drosophila melanogaster X BAC RP98-26J12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 168583 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tttgaattaatttataattt 37 |||||||||||||||||||| Sbjct: 139358 tttgaattaatttataattt 139377
>gb|AC122937.4| Mus musculus BAC clone RP23-24P3 from chromosome 15, complete sequence Length = 196863 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 gaccagtaggctttggcctg 351 |||||||||||||||||||| Sbjct: 181178 gaccagtaggctttggcctg 181159
>emb|BX088524.16| Zebrafish DNA sequence from clone CH211-215A9 in linkage group 10, complete sequence Length = 228624 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 3 cataaacttcatccatttgaattaattt 30 ||||||||||| ||||||| |||||||| Sbjct: 98523 cataaacttcagccatttgcattaattt 98496
>gb|AY589578.1| Triticum aestivum beta-expansin TaEXPB1 mRNA, complete cds Length = 1034 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 419 gagaatggcccctgcagcgggcgg 442 ||||| |||||||||||||||||| Sbjct: 846 gagaagggcccctgcagcgggcgg 823
>gb|AC157756.1| Mus musculus 10 BAC RP24-377M12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 180821 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 agatgacaccaaaatgatta 275 |||||||||||||||||||| Sbjct: 125506 agatgacaccaaaatgatta 125525
>gb|AE003485.3| Drosophila melanogaster chromosome X, section 37 of 74 of the complete sequence Length = 283075 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 tttgaattaatttataattt 37 |||||||||||||||||||| Sbjct: 119551 tttgaattaatttataattt 119570
>emb|CR627488.8| Zebrafish DNA sequence from clone CH211-242B23 in linkage group 10, complete sequence Length = 137433 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 3 cataaacttcatccatttgaattaattt 30 ||||||||||| ||||||| |||||||| Sbjct: 126876 cataaacttcagccatttgcattaattt 126849
>gb|AC165437.5| Mus musculus chromosome 15, clone RP23-285N11, complete sequence Length = 228289 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 gaccagtaggctttggcctg 351 |||||||||||||||||||| Sbjct: 31122 gaccagtaggctttggcctg 31103
>emb|AL845438.21| Zebrafish DNA sequence from clone CH211-120G21 in linkage group 10, complete sequence Length = 175059 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 3 cataaacttcatccatttgaattaattt 30 ||||||||||| ||||||| |||||||| Sbjct: 75447 cataaacttcagccatttgcattaattt 75420 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,380,778 Number of Sequences: 3902068 Number of extensions: 3380778 Number of successful extensions: 65298 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 65193 Number of HSP's gapped (non-prelim): 103 length of query: 455 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 433 effective length of database: 17,147,199,772 effective search space: 7424737501276 effective search space used: 7424737501276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)