ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart13h03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC158464.2| Medicago truncatula chromosome 2 BAC clone mth2-145m24, complete sequence Length = 89051 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Plus Query: 139 agcaatatcaaaatgcaaaatgaaac 164 |||||||||||||||||||||||||| Sbjct: 73645 agcaatatcaaaatgcaaaatgaaac 73670
>gb|AC114009.4| Mus musculus BAC clone RP23-385K2 from 8, complete sequence Length = 202089 Score = 46.1 bits (23), Expect = 0.091 Identities = 26/27 (96%) Strand = Plus / Plus Query: 302 tttctggaaaaaagaatcaaccagcca 328 ||||||||||||| ||||||||||||| Sbjct: 73477 tttctggaaaaaacaatcaaccagcca 73503
>gb|AC153013.3| Mus musculus BAC clone RP23-273N8 from chromosome 8, complete sequence Length = 196609 Score = 46.1 bits (23), Expect = 0.091 Identities = 26/27 (96%) Strand = Plus / Plus Query: 302 tttctggaaaaaagaatcaaccagcca 328 ||||||||||||| ||||||||||||| Sbjct: 186920 tttctggaaaaaacaatcaaccagcca 186946
>ref|XM_581757.2| PREDICTED: Bos taurus similar to cytochrome P450, family 2, subfamily C, polypeptide 19 (LOC505468), mRNA Length = 884 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 121 aatactttgtcatcatacagca 142 |||||||||||||||||||||| Sbjct: 260 aatactttgtcatcatacagca 239
>ref|XM_612207.2| PREDICTED: Bos taurus similar to suppressor of cytokine signaling 7 (LOC540586), mRNA Length = 2214 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 387 cgcgtcctcctcctccggcggc 408 |||||||||||||||||||||| Sbjct: 237 cgcgtcctcctcctccggcggc 216
>ref|NM_138657.3| Mus musculus suppressor of cytokine signaling 7 (Socs7), mRNA Length = 7015 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 387 cgcgtcctcctcctccggcggc 408 |||||||||||||||||||||| Sbjct: 136 cgcgtcctcctcctccggcggc 115
>gb|AY454155.1| Chlamydomonas reinhardtii strain CC-2290 PF26 gene, partial cds and 3' UTR Length = 549 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 389 cgtcctcctcctccggcggcgc 410 |||||||||||||||||||||| Sbjct: 26 cgtcctcctcctccggcggcgc 5
>gb|AC124567.4| Mus musculus BAC clone RP23-145E22 from 6, complete sequence Length = 218924 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 54 gaacagcaatttattttgttgt 75 |||||||||||||||||||||| Sbjct: 37251 gaacagcaatttattttgttgt 37272
>gb|AC104298.2| Homo sapiens chromosome 3 clone RP11-96N5, complete sequence Length = 175317 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 148 aaaatgcaaaatgaaacaaaac 169 |||||||||||||||||||||| Sbjct: 135105 aaaatgcaaaatgaaacaaaac 135126
>gb|AC092059.2| Homo sapiens chromosome 3 clone RP11-889D3, complete sequence Length = 186318 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 148 aaaatgcaaaatgaaacaaaac 169 |||||||||||||||||||||| Sbjct: 17974 aaaatgcaaaatgaaacaaaac 17995
>gb|AF424814.1|AF424814 Mus musculus SH2 domain containing SOCS box protein SOCS7 mRNA, complete cds Length = 2118 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 387 cgcgtcctcctcctccggcggc 408 |||||||||||||||||||||| Sbjct: 137 cgcgtcctcctcctccggcggc 116
>dbj|AK147650.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1099J02 product:suppressor of cytokine signaling 7, full insert sequence Length = 5628 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 387 cgcgtcctcctcctccggcggc 408 |||||||||||||||||||||| Sbjct: 234 cgcgtcctcctcctccggcggc 213
>dbj|AK147580.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN full-length enriched library, clone:M5C1082M04 product:suppressor of cytokine signaling 7, full insert sequence Length = 5629 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 387 cgcgtcctcctcctccggcggc 408 |||||||||||||||||||||| Sbjct: 234 cgcgtcctcctcctccggcggc 213
>ref|XM_213443.3| PREDICTED: Rattus norvegicus suppressor of cytokine signaling 7 (predicted) (Socs7_predicted), mRNA Length = 2087 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 387 cgcgtcctcctcctccggcggc 408 |||||||||||||||||||||| Sbjct: 120 cgcgtcctcctcctccggcggc 99
>emb|AL627128.16| Mouse DNA sequence from clone RP23-133J9 on chromosome 4, complete sequence Length = 183089 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 148 aaaatgcaaaatgaaacaaaac 169 |||||||||||||||||||||| Sbjct: 20929 aaaatgcaaaatgaaacaaaac 20908
>emb|AL596088.14| Mouse DNA sequence from clone RP23-157O10 on chromosome 11, complete sequence Length = 233204 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 387 cgcgtcctcctcctccggcggc 408 |||||||||||||||||||||| Sbjct: 35602 cgcgtcctcctcctccggcggc 35581
>gb|M87526.1|CRERSP4A Chlamydomonas reinhardtii flagellar radial spoke protein (RSP4) and RSP6) genes, complete cds Length = 7707 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 389 cgtcctcctcctccggcggcgc 410 |||||||||||||||||||||| Sbjct: 6936 cgtcctcctcctccggcggcgc 6915
>ref|XM_480493.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1632 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 cgtcctcctcctccggcggcg 409 ||||||||||||||||||||| Sbjct: 130 cgtcctcctcctccggcggcg 110
>ref|XM_517286.1| PREDICTED: Pan troglodytes platelet-derived growth factor receptor alpha (LOC461318), mRNA Length = 6686 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 acagcaatatcaaaatgcaaa 157 ||||||||||||||||||||| Sbjct: 5999 acagcaatatcaaaatgcaaa 5979
>ref|XM_957505.1| Neurospora crassa OR74A hypothetical protein (NCU06958.1) partial mRNA Length = 711 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 tcctcctcctccggcggcgcc 411 ||||||||||||||||||||| Sbjct: 349 tcctcctcctccggcggcgcc 369
>ref|XM_327243.1| Neurospora crassa OR74A hypothetical protein (NCU06958.1) partial mRNA Length = 711 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 tcctcctcctccggcggcgcc 411 ||||||||||||||||||||| Sbjct: 349 tcctcctcctccggcggcgcc 369
>ref|NM_006206.3| Homo sapiens platelet-derived growth factor receptor, alpha polypeptide (PDGFRA), mRNA Length = 6405 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 acagcaatatcaaaatgcaaa 157 ||||||||||||||||||||| Sbjct: 5702 acagcaatatcaaaatgcaaa 5682
>gb|AY350711.1| Sisymbrium irio clone BAC Sio11E11, complete sequence Length = 95357 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 28 tatatttcatttcatgctaagacga 52 ||||||| ||||||||||||||||| Sbjct: 47215 tatattttatttcatgctaagacga 47239
>gb|AY794812.1| Pogonophora schomburgkiana tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, partial sequence; chloroplast Length = 1039 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 gttcatttttatgtgtatcat 202 ||||||||||||||||||||| Sbjct: 777 gttcatttttatgtgtatcat 757
>gb|AY266231.1| Solanum dulcamara RGO228 tRNA-Thr (trnT) gene, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast genes for chloroplast products Length = 1720 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 gttcatttttatgtgtatcat 202 ||||||||||||||||||||| Sbjct: 1434 gttcatttttatgtgtatcat 1414
>gb|AC125782.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0095P22, complete sequence Length = 162766 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 cgtcctcctcctccggcggcg 409 ||||||||||||||||||||| Sbjct: 151264 cgtcctcctcctccggcggcg 151284
>gb|AC098587.5| Homo sapiens BAC clone RP11-231C18 from 4, complete sequence Length = 132164 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 acagcaatatcaaaatgcaaa 157 ||||||||||||||||||||| Sbjct: 36389 acagcaatatcaaaatgcaaa 36369
>gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0096I10, complete sequence Length = 171946 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 cgtcctcctcctccggcggcg 409 ||||||||||||||||||||| Sbjct: 58834 cgtcctcctcctccggcggcg 58814
>gb|AC010513.6| Homo sapiens chromosome 19 clone LLNLR-232H11, complete sequence Length = 37770 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 cctcatgctcctaaaggcaac 265 ||||||||||||||||||||| Sbjct: 18904 cctcatgctcctaaaggcaac 18884
>dbj|AK137293.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530098G20 product:unclassifiable, full insert sequence Length = 1594 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 aaacaaaacttagatcccaag 181 ||||||||||||||||||||| Sbjct: 687 aaacaaaacttagatcccaag 707
>dbj|AK162545.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530098G19 product:unclassifiable, full insert sequence Length = 1586 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 aaacaaaacttagatcccaag 181 ||||||||||||||||||||| Sbjct: 679 aaacaaaacttagatcccaag 699
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 cgtcctcctcctccggcggcg 409 ||||||||||||||||||||| Sbjct: 24350155 cgtcctcctcctccggcggcg 24350175
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 cgtcctcctcctccggcggcg 409 ||||||||||||||||||||| Sbjct: 5427712 cgtcctcctcctccggcggcg 5427732
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 148 aaaatgcaaaatgaaacaaaactta 172 |||||| |||||||||||||||||| Sbjct: 36076618 aaaatgaaaaatgaaacaaaactta 36076642
>dbj|AP003241.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0408C03 Length = 141273 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 148 aaaatgcaaaatgaaacaaaactta 172 |||||| |||||||||||||||||| Sbjct: 89343 aaaatgaaaaatgaaacaaaactta 89367
>dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0056O06 Length = 151038 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 cgtcctcctcctccggcggcg 409 ||||||||||||||||||||| Sbjct: 97523 cgtcctcctcctccggcggcg 97543
>gb|AC164107.3| Mus musculus BAC clone RP23-461D6 from chromosome 14, complete sequence Length = 181095 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 gaaaagaaatggggtatgctatcat 25 ||||||| ||||||||||||||||| Sbjct: 125085 gaaaagagatggggtatgctatcat 125061
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 cgtcctcctcctccggcggcg 409 ||||||||||||||||||||| Sbjct: 24661824 cgtcctcctcctccggcggcg 24661844
>gb|AC135358.3| Mus musculus BAC clone RP24-107J13 from 9, complete sequence Length = 182075 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 aaacaaaacttagatcccaag 181 ||||||||||||||||||||| Sbjct: 84725 aaacaaaacttagatcccaag 84705
>gb|M21574.1|HUMPDGFRAA Human platelet-derived growth factor receptor alpha (PDGFRA) mRNA, complete cds Length = 6378 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 acagcaatatcaaaatgcaaa 157 ||||||||||||||||||||| Sbjct: 5690 acagcaatatcaaaatgcaaa 5670
>gb|AY858986.1| Chlamydomonas incerta minus agglutinin (SAD1) gene, complete cds Length = 21171 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 tcctcctcctccggcggcgcc 411 ||||||||||||||||||||| Sbjct: 11647 tcctcctcctccggcggcgcc 11667
>gb|AC102288.11| Mus musculus chromosome 18, clone RP24-346H24, complete sequence Length = 154552 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 aggttcatttttatgtgtat 199 |||||||||||||||||||| Sbjct: 121083 aggttcatttttatgtgtat 121064
>gb|AC154041.1| Drosophila melanogaster clone BACR43N11, complete sequence Length = 157286 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 cagacgcgtcctcctcctcc 402 |||||||||||||||||||| Sbjct: 80518 cagacgcgtcctcctcctcc 80537
>gb|AC167164.6| Mus musculus chromosome 7, clone RP24-276M8, complete sequence Length = 171048 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 189 tttatgtgtatcatctgtgtgtagtata 216 |||||||||||||| |||||| |||||| Sbjct: 86235 tttatgtgtatcatatgtgtgcagtata 86262
>gb|AY596295.1| Haloarcula marismortui ATCC 43049 plasmid pNG600, complete sequence Length = 155300 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 tcctcctccggcggcgccgt 413 |||||||||||||||||||| Sbjct: 82097 tcctcctccggcggcgccgt 82078
>gb|AF377946.3| Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone OSJNBa0031O09, complete sequence Length = 161339 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 389 cgtcctcctcctccggcggcgccg 412 ||||||||||||||| |||||||| Sbjct: 24752 cgtcctcctcctccgccggcgccg 24729
>gb|AC146936.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1154F06 map near C10769, complete sequence Length = 194856 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 cgtcctcctcctccggcggcgccg 412 ||||||||||||||| |||||||| Sbjct: 154680 cgtcctcctcctccgccggcgccg 154703
>gb|AC120863.9| Mus musculus chromosome 7, clone RP23-84H3, complete sequence Length = 241742 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 189 tttatgtgtatcatctgtgtgtagtata 216 |||||||||||||| |||||| |||||| Sbjct: 223020 tttatgtgtatcatatgtgtgcagtata 222993
>gb|AC147426.2| Oryza sativa chromosome 3 B1377B10 genomic sequence, complete sequence Length = 184366 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 389 cgtcctcctcctccggcggcgccg 412 ||||||||||||||| |||||||| Sbjct: 167906 cgtcctcctcctccgccggcgccg 167883
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 cgcgtcctcctcctccggcggcgc 410 ||||||||||||||| |||||||| Sbjct: 3263969 cgcgtcctcctcctcgggcggcgc 3263992
>gb|AC147246.3| Mus musculus BAC clone RP23-465M17 from chromosome 7, complete sequence Length = 198132 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 caatatcaaaatgcaaaatg 160 |||||||||||||||||||| Sbjct: 190073 caatatcaaaatgcaaaatg 190092
>gb|AC087860.2| Bos taurus clone RP42-135P2, complete sequence Length = 203696 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 atcattgtatatttcatttc 40 |||||||||||||||||||| Sbjct: 26320 atcattgtatatttcatttc 26301
>gb|AC161765.5| Mus musculus BAC clone RP23-85I5 from chromosome 8, complete sequence Length = 219629 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 aatcaaccagccactgactt 335 |||||||||||||||||||| Sbjct: 199436 aatcaaccagccactgactt 199417
>gb|AC157545.12| Mus musculus chromosome 1, clone RP23-317L18, complete sequence Length = 197367 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 aagaatcaaccagccactga 332 |||||||||||||||||||| Sbjct: 181156 aagaatcaaccagccactga 181175
>gb|DP000008.1| Bos taurus target 1 genomic scaffold Length = 2072671 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 atcattgtatatttcatttc 40 |||||||||||||||||||| Sbjct: 616824 atcattgtatatttcatttc 616805
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 389 cgtcctcctcctccggcggcgccg 412 ||||||||||||||| |||||||| Sbjct: 28984611 cgtcctcctcctccgccggcgccg 28984588
>gb|AC135640.5| Mus musculus BAC clone RP23-362A12 from chromosome 7, complete sequence Length = 205974 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 caatatcaaaatgcaaaatg 160 |||||||||||||||||||| Sbjct: 16197 caatatcaaaatgcaaaatg 16216
>gb|AC127419.3| Mus musculus BAC clone RP24-242N1 from chromosome 8, complete sequence Length = 167099 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 154 caaaatgaaacaaaacttagatcc 177 ||||||||||||||| |||||||| Sbjct: 43077 caaaatgaaacaaaagttagatcc 43100
>gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2 of 11 of the complete sequence Length = 613322 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 caatttattttgttgtgtat 79 |||||||||||||||||||| Sbjct: 188756 caatttattttgttgtgtat 188737
>gb|AC118033.7| Mus musculus chromosome 14, clone RP23-472J4, complete sequence Length = 178111 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 aaaatgaaacaaaacttaga 174 |||||||||||||||||||| Sbjct: 147953 aaaatgaaacaaaacttaga 147934
>gb|AC148058.4| Callicebus moloch clone LB5-358H21, complete sequence Length = 151378 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aaagaaatggggtatgctat 22 |||||||||||||||||||| Sbjct: 135235 aaagaaatggggtatgctat 135216
>gb|AC164088.2| Mus musculus BAC clone RP23-65F24 from chromosome 16, complete sequence Length = 240181 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 aaaatgcaaaatgaaacaaa 167 |||||||||||||||||||| Sbjct: 106717 aaaatgcaaaatgaaacaaa 106736
>gb|AC087871.9| Genomic sequence for Mus musculus, clone RP23-334N23, complete sequence Length = 117000 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 tggaaaaaagaatcaaccag 325 |||||||||||||||||||| Sbjct: 17769 tggaaaaaagaatcaaccag 17750
>emb|BX284668.4| Human DNA sequence from clone RP11-108M9 on chromosome 1 Contains four novel genes, a novel pseudogene, the 5' end of the CROCC gene for ciliary rootlet coiled-coil rootletin (KIAA0445) and two CpG islands, complete sequence Length = 93826 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 tcattgtatatttcatttca 41 |||||||||||||||||||| Sbjct: 82432 tcattgtatatttcatttca 82451
>gb|AC182351.3| Ateles geoffroyi clone UC1-76C3, complete sequence Length = 212614 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aaagaaatggggtatgctat 22 |||||||||||||||||||| Sbjct: 185563 aaagaaatggggtatgctat 185544
>emb|AL162717.10| Human DNA sequence from clone RP11-123H22 on chromosome 13q14.2-21.2 Contains a novel gene, complete sequence Length = 153859 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 caatttattttgttgtgtat 79 |||||||||||||||||||| Sbjct: 68303 caatttattttgttgtgtat 68284
>emb|AL157785.8| Human DNA sequence from clone RP11-169O16 on chromosome 10, complete sequence Length = 46283 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 291 aaagtatttcgtttctggaaaaaa 314 |||||||||| ||||||||||||| Sbjct: 15661 aaagtatttcatttctggaaaaaa 15684
>gb|AC131150.8| Homo sapiens 3 BAC RP11-637J15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 48977 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 atgcaaaatgaaacaaaacttaga 174 |||||||| ||||||||||||||| Sbjct: 10487 atgcaaaacgaaacaaaacttaga 10510
>gb|AC040934.15| Homo sapiens chromosome 17, clone CTD-2026D20, complete sequence Length = 168194 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 tcattgtatatttcatttca 41 |||||||||||||||||||| Sbjct: 16562 tcattgtatatttcatttca 16581
>gb|AC026353.12| Homo sapiens 3 RP11-298O21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 138312 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 aatatcaaaatgcaaaatgaaaca 165 |||||| ||||||||||||||||| Sbjct: 97869 aatatccaaatgcaaaatgaaaca 97892
>emb|BX571886.9| Zebrafish DNA sequence from clone DKEY-257C10 in linkage group 15, complete sequence Length = 178049 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 aatgcaaaatgaaacaaaac 169 |||||||||||||||||||| Sbjct: 38040 aatgcaaaatgaaacaaaac 38059
>gb|AC010575.5| Drosophila melanogaster 3L BAC RP98-5M7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 172401 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 cagacgcgtcctcctcctcc 402 |||||||||||||||||||| Sbjct: 12053 cagacgcgtcctcctcctcc 12072
>gb|AC010574.5| Drosophila melanogaster 3L BAC RP98-7L7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 162402 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 ttcatttttatgtgtatcat 202 |||||||||||||||||||| Sbjct: 113027 ttcatttttatgtgtatcat 113046
>gb|AC090573.6| Homo sapiens chromosome 8, clone RP11-440B23, complete sequence Length = 204032 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 ctatcattgtatatttcatttcat 42 |||||||| ||||||||||||||| Sbjct: 103401 ctatcattttatatttcatttcat 103424
>ref|NM_139645.2| Drosophila melanogaster CG15021-RA (CG15021), mRNA Length = 1545 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 cagacgcgtcctcctcctcc 402 |||||||||||||||||||| Sbjct: 382 cagacgcgtcctcctcctcc 401
>gb|AC154287.2| Mus musculus BAC clone RP24-484I9 from chromosome 14, complete sequence Length = 165637 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 146 tcaaaatgcaaaatgaaacaaaac 169 |||||||||||| ||||||||||| Sbjct: 96203 tcaaaatgcaaattgaaacaaaac 96226
>gb|AY071124.1| Drosophila melanogaster RE17165 full length cDNA Length = 1549 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 cagacgcgtcctcctcctcc 402 |||||||||||||||||||| Sbjct: 380 cagacgcgtcctcctcctcc 399
>gb|AC068234.8| Homo sapiens chromosome 17, clone RP11-290H9, complete sequence Length = 174566 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 tcattgtatatttcatttca 41 |||||||||||||||||||| Sbjct: 47989 tcattgtatatttcatttca 47970
>gb|AC159640.2| Mus musculus BAC clone RP24-70O22 from chromosome 12, complete sequence Length = 214955 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 aaatgcaaaatgaaacaaaa 168 |||||||||||||||||||| Sbjct: 117721 aaatgcaaaatgaaacaaaa 117702
>gb|AC110911.18| Mus musculus chromosome 7, clone RP24-357A15, complete sequence Length = 146978 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 189 tttatgtgtatcatctgtgtgtagtata 216 |||||||||||||| |||||| |||||| Sbjct: 72657 tttatgtgtatcatatgtgtgcagtata 72684
>gb|AE016826.1| Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome Length = 615980 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 aaacaagtaaaagtatttcg 301 |||||||||||||||||||| Sbjct: 168420 aaacaagtaaaagtatttcg 168439
>gb|AC023263.4|AC023263 Homo sapiens, clone RP11-590E14, complete sequence Length = 174176 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 aaaatgaaacaaaacttaga 174 |||||||||||||||||||| Sbjct: 125801 aaaatgaaacaaaacttaga 125820
>dbj|AK043622.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830012P06 product:unclassifiable, full insert sequence Length = 2820 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 aagaatcaaccagccactga 332 |||||||||||||||||||| Sbjct: 197 aagaatcaaccagccactga 178
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 389 cgtcctcctcctccggcggcgccg 412 ||||||||||||||| |||||||| Sbjct: 29076033 cgtcctcctcctccgccggcgccg 29076010
>gb|AC124789.12| Homo sapiens chromosome 17, clone RP11-923C2, complete sequence Length = 105701 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 cgtcctcctcctccggcggc 408 |||||||||||||||||||| Sbjct: 57278 cgtcctcctcctccggcggc 57297
>gb|AC090023.20| Homo sapiens 12 BAC RP11-221N13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 114177 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 tatgtgtatcatctgtgtgt 210 |||||||||||||||||||| Sbjct: 73404 tatgtgtatcatctgtgtgt 73385
>gb|AC115992.13| Homo sapiens chromosome 17, clone CTD-2022O14, complete sequence Length = 139475 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 cgtcctcctcctccggcggc 408 |||||||||||||||||||| Sbjct: 123361 cgtcctcctcctccggcggc 123342
>gb|AC107066.2| Homo sapiens BAC clone RP11-2M10 from 2, complete sequence Length = 113596 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 aatatcaatactaatacttt 128 |||||||||||||||||||| Sbjct: 105175 aatatcaatactaatacttt 105194
>dbj|AK106139.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-G07, full insert sequence Length = 1005 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 cgtcctcctcctccggcggcgccg 412 ||||||||||||||| |||||||| Sbjct: 328 cgtcctcctcctccgccggcgccg 351
>dbj|AK102605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098O18, full insert sequence Length = 1192 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 cgtcctcctcctccggcggcgccg 412 ||||||||||||||| |||||||| Sbjct: 359 cgtcctcctcctccgccggcgccg 382
>emb|AJ329285.1|HSA329285 Homo sapiens genomic sequence surrounding NotI site, clone NL6-BJ10R Length = 761 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 cgtcctcctcctccggcggc 408 |||||||||||||||||||| Sbjct: 196 cgtcctcctcctccggcggc 177
>emb|CR376730.13| Zebrafish DNA sequence from clone CH211-205A14 in linkage group 20, complete sequence Length = 156481 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 gagagctgaggatatgaggc 377 |||||||||||||||||||| Sbjct: 97323 gagagctgaggatatgaggc 97304
>dbj|AK059834.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-B06, full insert sequence Length = 1134 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 cgtcctcctcctccggcggcgccg 412 ||||||||||||||| |||||||| Sbjct: 378 cgtcctcctcctccgccggcgccg 401
>gb|AE003530.3| Drosophila melanogaster chromosome 3L, section 55 of 83 of the complete sequence Length = 279152 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 ttcatttttatgtgtatcat 202 |||||||||||||||||||| Sbjct: 126059 ttcatttttatgtgtatcat 126078
>gb|AE003481.3| Drosophila melanogaster chromosome 3L, section 15 of 83 of the complete sequence Length = 315988 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 cagacgcgtcctcctcctcc 402 |||||||||||||||||||| Sbjct: 128473 cagacgcgtcctcctcctcc 128492
>emb|AL049840.8|CNS0000K Human chromosome 14 DNA sequence BAC R-73M18 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 165617 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 agcagatcagagagctgagg 368 |||||||||||||||||||| Sbjct: 127710 agcagatcagagagctgagg 127691
>emb|CR790380.7| Zebrafish DNA sequence from clone DKEY-238N5 in linkage group 6, complete sequence Length = 170914 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 aaaatgcaaaatgaaacaaa 167 |||||||||||||||||||| Sbjct: 138293 aaaatgcaaaatgaaacaaa 138312
>gb|AC118750.13| Mus musculus chromosome 10, clone RP24-198J23, complete sequence Length = 174226 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 148 aaaatgcaaaatgaaacaaaactt 171 |||| ||||||||||||||||||| Sbjct: 80118 aaaaggcaaaatgaaacaaaactt 80095
>dbj|AP000486.6| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-23I22, complete sequence Length = 152472 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 cagccactgacttgtgtctt 342 |||||||||||||||||||| Sbjct: 34752 cagccactgacttgtgtctt 34733
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 ttcatttttatgtgtatcatctgt 206 ||||||||||| |||||||||||| Sbjct: 3377693 ttcatttttatatgtatcatctgt 3377716
>gb|AC153833.5| Mus musculus 6 BAC RP23-308F24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 170164 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 caaggttcatttttatgtgt 197 |||||||||||||||||||| Sbjct: 135261 caaggttcatttttatgtgt 135242
>ref|NM_014598.1| Homo sapiens suppressor of cytokine signaling 7 (SOCS7), mRNA Length = 2162 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 cgtcctcctcctccggcggc 408 |||||||||||||||||||| Sbjct: 166 cgtcctcctcctccggcggc 147
>gb|AC151573.2| Mus musculus BAC clone RP23-410B24 from 8, complete sequence Length = 202731 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 154 caaaatgaaacaaaacttagatcc 177 ||||||||||||||| |||||||| Sbjct: 169320 caaaatgaaacaaaagttagatcc 169343
>emb|CT010472.8| Mouse DNA sequence from clone RP23-37H11 on chromosome 13, complete sequence Length = 182622 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 153 gcaaaatgaaacaaaacttagatc 176 |||||||||||||||||| ||||| Sbjct: 160917 gcaaaatgaaacaaaactcagatc 160940
>dbj|AP004488.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02F05, TM0020, complete sequence Length = 80920 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 tatcaaaatgcaaaatgaaacaaa 167 ||||||| |||||||||||||||| Sbjct: 49108 tatcaaactgcaaaatgaaacaaa 49131
>gb|DP000019.1| Callicebus moloch target 1 genomic scaffold Length = 2105003 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aaagaaatggggtatgctat 22 |||||||||||||||||||| Sbjct: 802112 aaagaaatggggtatgctat 802093
>emb|AL365326.14| Mouse DNA sequence from clone RP23-381K21 on chromosome 1, complete sequence Length = 189860 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 tatgtgtatcatctgtgtgtagta 214 |||||||||||| ||||||||||| Sbjct: 183849 tatgtgtatcatatgtgtgtagta 183826
>emb|AL365317.22| Mouse DNA sequence from clone RP23-179K8 on chromosome 1, complete sequence Length = 187131 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 tatgtgtatcatctgtgtgtagta 214 |||||||||||| ||||||||||| Sbjct: 43494 tatgtgtatcatatgtgtgtagta 43471
>emb|AL833808.4| Mouse DNA sequence from clone RP23-442N3 on chromosome 2, complete sequence Length = 202985 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 atttattttgttgtgtatgc 81 |||||||||||||||||||| Sbjct: 80552 atttattttgttgtgtatgc 80533 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,149,985 Number of Sequences: 3902068 Number of extensions: 6149985 Number of successful extensions: 138765 Number of sequences better than 10.0: 109 Number of HSP's better than 10.0 without gapping: 109 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 138103 Number of HSP's gapped (non-prelim): 662 length of query: 417 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 395 effective length of database: 17,147,199,772 effective search space: 6773143909940 effective search space used: 6773143909940 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
