ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart13g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196703.1| Oryza sativa (japonica cultivar-group) putative... 149 9e-33
2dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 149 9e-33
3gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) ch... 149 9e-33
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 149 9e-33
5gb|AY705128.1| Uncultured aquatic bacteriophage clone BES02A-4 g... 44 0.40
6gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome ... 44 0.40
7dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.40
8gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.40
9dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 44 0.40
10dbj|AK101051.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.40
11gb|AC167718.4| Culex pipiens quinquefasciatus, clone Culex pipie... 42 1.6
12gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 1.6
13gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 1.6
14gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 1.6
15gb|AC167662.6| Culex pipiens quinquefasciatus, clone Culex pipie... 42 1.6
16emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.6
17gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 6.3
18gb|AY509120.1| Streptomyces bikiniensis strain NRRL 2737 chalcom... 40 6.3
19ref|XM_473276.1| Oryza sativa (japonica cultivar-group), predic... 40 6.3
20gb|AY596296.1| Haloarcula marismortui ATCC 43049 plasmid pNG700,... 40 6.3
21gb|BC073238.1| Xenopus laevis hypothetical protein LOC443632, mR... 40 6.3
22ref|XM_365683.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 6.3
23emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete ch... 40 6.3
24emb|Z75741.1|HS107N3 Human DNA sequence from clone RP1-107N3 on ... 40 6.3
25gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 6.3
26emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genom... 40 6.3
27emb|BX294153.1| Pirellula sp. strain 1 complete genome; segment ... 40 6.3
28emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4,... 40 6.3
29emb|AL604029.12| Mouse DNA sequence from clone RP23-155J3 on chr... 40 6.3
30gb|BC097544.1| Xenopus laevis hypothetical protein LOC443632, mR... 40 6.3
31gb|AF448496.1| Toxoplasma gondii cGMP dependent protein kinase (... 40 6.3
32gb|AC069255.18|AC069255 Homo sapiens 3 BAC RP11-568N1 (Roswell P... 40 6.3
33dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
34gb|AC017084.8| Homo sapiens BAC clone RP11-480F1 from 2, complet... 40 6.3
35dbj|AP003795.2| Gallus gallus genomic DNA, chromosome 5, clone:1... 40 6.3
36gb|AC098650.2| Homo sapiens chromosome 3 clone RP11-654A7, compl... 40 6.3
37dbj|AK120509.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
38dbj|AK072297.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
39emb|AL442109.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.3
40emb|CT025675.12| Mouse DNA sequence from clone RP24-289M11 on ch... 40 6.3
41gb|AC108833.9| Mus musculus chromosome 14, clone RP23-263F4, com... 40 6.3
42emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4,... 40 6.3
43gb|AC159011.2| Gallus gallus BAC clone CH261-107A24 from chromos... 40 6.3
44dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 6.3 
>ref|NM_196703.1| Oryza sativa (japonica cultivar-group) putative putative
            glucosyltransferase (OSJNBa0046P18.12), mRNA
          Length = 1512

 Score =  149 bits (75), Expect = 9e-33
 Identities = 165/195 (84%)
 Strand = Plus / Minus

                                                                        
Query: 268  ctcccggagctcctccccctctttcccggacatgacgcgctcgatcgtcgccttcacctc 327
            |||||||||| ||||||| || | ||||  ||| || | ||||||| ||||| |||||||
Sbjct: 1386 ctcccggagcacctccccttcctccccgtgcatcaccccctcgatcctcgccctcacctc 1327

                                                                        
Query: 328  gtcggcgaacaccgcgccacgatccccgatggtcaccccgacacgccactcccgcacgac 387
            | |||||  ||| ||||| || || |||| || ||| ||| | |||||||||||||||||
Sbjct: 1326 gccggcgtccacggcgccgcggtcgccgacggccacgccggcgcgccactcccgcacgac 1267

                                                                        
Query: 388  gagccgccggttggtgaactggtcggtgagcagagggaagcagagcatgggcactccggc 447
            ||| || |||||||||||||||||||||||||| |||||||| ||||| ||||| |||||
Sbjct: 1266 gaggcggcggttggtgaactggtcggtgagcagcgggaagcacagcatcggcaccccggc 1207

                           
Query: 448  ccacacgctctccag 462
            |||| ||||||||||
Sbjct: 1206 ccacgcgctctccag 1192
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  149 bits (75), Expect = 9e-33
 Identities = 165/195 (84%)
 Strand = Plus / Plus

                                                                            
Query: 268      ctcccggagctcctccccctctttcccggacatgacgcgctcgatcgtcgccttcacctc 327
                |||||||||| ||||||| || | ||||  ||| || | ||||||| ||||| |||||||
Sbjct: 15380023 ctcccggagcacctccccttcctccccgtgcatcaccccctcgatcctcgccctcacctc 15380082

                                                                            
Query: 328      gtcggcgaacaccgcgccacgatccccgatggtcaccccgacacgccactcccgcacgac 387
                | |||||  ||| ||||| || || |||| || ||| ||| | |||||||||||||||||
Sbjct: 15380083 gccggcgtccacggcgccgcggtcgccgacggccacgccggcgcgccactcccgcacgac 15380142

                                                                            
Query: 388      gagccgccggttggtgaactggtcggtgagcagagggaagcagagcatgggcactccggc 447
                ||| || |||||||||||||||||||||||||| |||||||| ||||| ||||| |||||
Sbjct: 15380143 gaggcggcggttggtgaactggtcggtgagcagcgggaagcacagcatcggcaccccggc 15380202

                               
Query: 448      ccacacgctctccag 462
                |||| ||||||||||
Sbjct: 15380203 ccacgcgctctccag 15380217
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>gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0046P18,
             complete sequence
          Length = 144720

 Score =  149 bits (75), Expect = 9e-33
 Identities = 165/195 (84%)
 Strand = Plus / Plus

                                                                         
Query: 268   ctcccggagctcctccccctctttcccggacatgacgcgctcgatcgtcgccttcacctc 327
             |||||||||| ||||||| || | ||||  ||| || | ||||||| ||||| |||||||
Sbjct: 97386 ctcccggagcacctccccttcctccccgtgcatcaccccctcgatcctcgccctcacctc 97445

                                                                         
Query: 328   gtcggcgaacaccgcgccacgatccccgatggtcaccccgacacgccactcccgcacgac 387
             | |||||  ||| ||||| || || |||| || ||| ||| | |||||||||||||||||
Sbjct: 97446 gccggcgtccacggcgccgcggtcgccgacggccacgccggcgcgccactcccgcacgac 97505

                                                                         
Query: 388   gagccgccggttggtgaactggtcggtgagcagagggaagcagagcatgggcactccggc 447
             ||| || |||||||||||||||||||||||||| |||||||| ||||| ||||| |||||
Sbjct: 97506 gaggcggcggttggtgaactggtcggtgagcagcgggaagcacagcatcggcaccccggc 97565

                            
Query: 448   ccacacgctctccag 462
             |||| ||||||||||
Sbjct: 97566 ccacgcgctctccag 97580
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  149 bits (75), Expect = 9e-33
 Identities = 165/195 (84%)
 Strand = Plus / Plus

                                                                            
Query: 268      ctcccggagctcctccccctctttcccggacatgacgcgctcgatcgtcgccttcacctc 327
                |||||||||| ||||||| || | ||||  ||| || | ||||||| ||||| |||||||
Sbjct: 15388264 ctcccggagcacctccccttcctccccgtgcatcaccccctcgatcctcgccctcacctc 15388323

                                                                            
Query: 328      gtcggcgaacaccgcgccacgatccccgatggtcaccccgacacgccactcccgcacgac 387
                | |||||  ||| ||||| || || |||| || ||| ||| | |||||||||||||||||
Sbjct: 15388324 gccggcgtccacggcgccgcggtcgccgacggccacgccggcgcgccactcccgcacgac 15388383

                                                                            
Query: 388      gagccgccggttggtgaactggtcggtgagcagagggaagcagagcatgggcactccggc 447
                ||| || |||||||||||||||||||||||||| |||||||| ||||| ||||| |||||
Sbjct: 15388384 gaggcggcggttggtgaactggtcggtgagcagcgggaagcacagcatcggcaccccggc 15388443

                               
Query: 448      ccacacgctctccag 462
                |||| ||||||||||
Sbjct: 15388444 ccacgcgctctccag 15388458
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>gb|AY705128.1| Uncultured aquatic bacteriophage clone BES02A-4 g20 gene, partial
           cds
          Length = 543

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 30  ttaagtacacactgcacacgaa 51
           ||||||||||||||||||||||
Sbjct: 410 ttaagtacacactgcacacgaa 389
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>gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
             OSJNBa0035B22, complete sequence
          Length = 155788

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 215   gacccgccgtccgccgcggcggcctc 240
             ||||||||| ||||||||||||||||
Sbjct: 40351 gacccgccgcccgccgcggcggcctc 40326
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 215      gacccgccgtccgccgcggcggcctc 240
                ||||||||| ||||||||||||||||
Sbjct: 21834917 gacccgccgcccgccgcggcggcctc 21834892
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 217     cccgccgtccgccgcggcggcc 238
               ||||||||||||||||||||||
Sbjct: 2696945 cccgccgtccgccgcggcggcc 2696966



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 228     ccgcggcggcctcgagcgtc 247
               ||||||||||||||||||||
Sbjct: 1291309 ccgcggcggcctcgagcgtc 1291328
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 327    cgtcggcgaacaccgcgccacg 348
              ||||||||||||||||||||||
Sbjct: 502931 cgtcggcgaacaccgcgccacg 502952
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>dbj|AK101051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033010E07, full
           insert sequence
          Length = 1766

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 215 gacccgccgtccgccgcggcggcctc 240
           ||||||||| ||||||||||||||||
Sbjct: 631 gacccgccgcccgccgcggcggcctc 656
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>gb|AC167718.4| Culex pipiens quinquefasciatus, clone Culex pipiens
              quinquefasciatus-3940130D9, complete sequence
          Length = 117683

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 231    cggcggcctcgagcgtcgccctcaccttc 259
              |||||||||||||||||||| || |||||
Sbjct: 99982  cggcggcctcgagcgtcgccttcgccttc 100010
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 303     cgcgctcgatcgtcgccttca 323
               |||||||||||||||||||||
Sbjct: 1547742 cgcgctcgatcgtcgccttca 1547762
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 227     gccgcggcggcctcgagcgtc 247
               |||||||||||||||||||||
Sbjct: 1973174 gccgcggcggcctcgagcgtc 1973194
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 227     gccgcggcggcctcgagcgtc 247
               |||||||||||||||||||||
Sbjct: 1459085 gccgcggcggcctcgagcgtc 1459065
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>gb|AC167662.6| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940141D9, complete sequence
          Length = 117679

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 231   cggcggcctcgagcgtcgccctcaccttc 259
             |||||||||||||||||||| || |||||
Sbjct: 17701 cggcggcctcgagcgtcgccttcgccttc 17673
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 227     gccgcggcggcctcgagcgtc 247
               |||||||||||||||||||||
Sbjct: 1346273 gccgcggcggcctcgagcgtc 1346253
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 302   acgcgctcgatcgtcgccttcacc 325
             |||| |||||||||||||||||||
Sbjct: 42803 acgccctcgatcgtcgccttcacc 42826
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>gb|AY509120.1| Streptomyces bikiniensis strain NRRL 2737 chalcomycin biosynthetic
            gene cluster, partial sequence
          Length = 85915

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 315  tcgccttcacctcgtcggcgaaca 338
            |||||||| |||||||||||||||
Sbjct: 2750 tcgccttctcctcgtcggcgaaca 2773
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>ref|XM_473276.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1026

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 317 gccttcacctcgtcggcgaacacc 340
           |||||||||||| |||||||||||
Sbjct: 800 gccttcacctcgccggcgaacacc 777
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>gb|AY596296.1| Haloarcula marismortui ATCC 43049 plasmid pNG700, complete sequence
          Length = 410554

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    acctcgtcggcgaacaccgc 342
              ||||||||||||||||||||
Sbjct: 163286 acctcgtcggcgaacaccgc 163267
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>gb|BC073238.1| Xenopus laevis hypothetical protein LOC443632, mRNA (cDNA clone
            IMAGE:5440135), partial cds
          Length = 2560

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 414  tgagcagagggaagcagagc 433
            ||||||||||||||||||||
Sbjct: 1837 tgagcagagggaagcagagc 1856
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>ref|XM_365683.1| Magnaporthe grisea 70-15 hypothetical protein (MG02385.4) partial
            mRNA
          Length = 3021

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  cgtccgccgcggcggcctcg 241
            ||||||||||||||||||||
Sbjct: 1267 cgtccgccgcggcggcctcg 1248
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>emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete chromosome; segment 6/12
          Length = 329100

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 316    cgccttcacctcgtcggcga 335
              ||||||||||||||||||||
Sbjct: 318161 cgccttcacctcgtcggcga 318142
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>emb|Z75741.1|HS107N3 Human DNA sequence from clone RP1-107N3 on chromosome X Contains a
              kinesin heavy chain member 2 (KIF2) pseudogene and a
              Huntingtin interacting protein K (HYPK) pseudogene,
              complete sequence
          Length = 174045

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 9      aaatctgacttttgatagcaatta 32
              ||||||||||||||| ||||||||
Sbjct: 169357 aaatctgacttttgaaagcaatta 169380
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 222     cgtccgccgcggcggcctcg 241
               ||||||||||||||||||||
Sbjct: 1773731 cgtccgccgcggcggcctcg 1773712
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>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16
          Length = 348580

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 309    cgatcgtcgccttcacctcgtcgg 332
              |||||||||| |||||||||||||
Sbjct: 312557 cgatcgtcgcgttcacctcgtcgg 312534
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>emb|BX294153.1| Pirellula sp. strain 1 complete genome; segment 21/24
          Length = 293350

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    cgtccgccgcggcggcctcg 241
              ||||||||||||||||||||
Sbjct: 175512 cgtccgccgcggcggcctcg 175531
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>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
             complete sequence
          Length = 140454

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 317   gccttcacctcgtcggcgaacacc 340
             |||||||||||| |||||||||||
Sbjct: 64352 gccttcacctcgccggcgaacacc 64329
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>emb|AL604029.12| Mouse DNA sequence from clone RP23-155J3 on chromosome 11 Contains an H3
              histone family 3A (H3f3a) pseudogene, the Zfp179 gene for
              zinc finger protein 179, the gene for the possible ortholog
              of H. sapiens microfibrillar-associated protein 4 (MFAP4)
              (1110007F23Rik), the Mapk7 gene for mitogen-activated
              kinase 7, a novel gene (3110043A19Rik), the Eppb9 gene for
              endothelial precursor protein B9, the Epn2 gene for epsin
              2, a novel gene and three CpG islands, complete sequence
          Length = 204653

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 423    ggaagcagagcatgggcact 442
              ||||||||||||||||||||
Sbjct: 189900 ggaagcagagcatgggcact 189919
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>gb|BC097544.1| Xenopus laevis hypothetical protein LOC443632, mRNA (cDNA clone
            IMAGE:5516104), partial cds
          Length = 1947

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 414  tgagcagagggaagcagagc 433
            ||||||||||||||||||||
Sbjct: 1826 tgagcagagggaagcagagc 1845
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>gb|AF448496.1| Toxoplasma gondii cGMP dependent protein kinase (PKG) gene, complete
            cds
          Length = 20447

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 407  tggtcggtgagcagagggaagcag 430
            ||||||||||||| ||||||||||
Sbjct: 1356 tggtcggtgagcatagggaagcag 1333
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>gb|AC069255.18|AC069255 Homo sapiens 3 BAC RP11-568N1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 184151

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 31    taagtacacactgcacacgaacat 54
             |||||| |||||||||||||||||
Sbjct: 56142 taagtatacactgcacacgaacat 56165
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 317      gccttcacctcgtcggcgaacacc 340
                |||||||||||| |||||||||||
Sbjct: 26527466 gccttcacctcgccggcgaacacc 26527443
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>gb|AC017084.8| Homo sapiens BAC clone RP11-480F1 from 2, complete sequence
          Length = 73297

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 31    taagtacacactgcacacgaacat 54
             |||||| |||||||||||||||||
Sbjct: 39318 taagtatacactgcacacgaacat 39341
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>dbj|AP003795.2| Gallus gallus genomic DNA, chromosome 5, clone:192C9, complete sequence
          Length = 187259

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 5     agaaaaatctgacttttgatagca 28
             |||||||||||| |||||||||||
Sbjct: 70603 agaaaaatctgagttttgatagca 70580
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>gb|AC098650.2| Homo sapiens chromosome 3 clone RP11-654A7, complete sequence
          Length = 201243

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     acagaaaaatctgacttttg 22
             ||||||||||||||||||||
Sbjct: 87867 acagaaaaatctgacttttg 87848
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>dbj|AK120509.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123H17, full
           insert sequence
          Length = 1698

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 317 gccttcacctcgtcggcgaacacc 340
           |||||||||||| |||||||||||
Sbjct: 908 gccttcacctcgccggcgaacacc 885
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>dbj|AK072297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018D17, full
           insert sequence
          Length = 1572

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 317 gccttcacctcgtcggcgaacacc 340
           |||||||||||| |||||||||||
Sbjct: 955 gccttcacctcgccggcgaacacc 932
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>emb|AL442109.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B1011H02, complete
             sequence
          Length = 40167

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 317   gccttcacctcgtcggcgaacacc 340
             |||||||||||| |||||||||||
Sbjct: 26276 gccttcacctcgccggcgaacacc 26253
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>emb|CT025675.12| Mouse DNA sequence from clone RP24-289M11 on chromosome 14, complete
             sequence
          Length = 147656

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 424   gaagcagagcatgggcactc 443
             ||||||||||||||||||||
Sbjct: 60078 gaagcagagcatgggcactc 60097
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>gb|AC108833.9| Mus musculus chromosome 14, clone RP23-263F4, complete sequence
          Length = 171398

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 424    gaagcagagcatgggcactc 443
              ||||||||||||||||||||
Sbjct: 123843 gaagcagagcatgggcactc 123862
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>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08,
              complete sequence
          Length = 171551

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 317    gccttcacctcgtcggcgaacacc 340
              |||||||||||| |||||||||||
Sbjct: 168106 gccttcacctcgccggcgaacacc 168083
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>gb|AC159011.2| Gallus gallus BAC clone CH261-107A24 from chromosome unknown,
            complete sequence
          Length = 249034

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 5    agaaaaatctgacttttgatagca 28
            |||||||||||| |||||||||||
Sbjct: 4626 agaaaaatctgagttttgatagca 4603
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 219     cgccgtccgccgcggcggcctcga 242
               |||||||||||||||||| |||||
Sbjct: 3547544 cgccgtccgccgcggcggactcga 3547567


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,290,111
Number of Sequences: 3902068
Number of extensions: 3290111
Number of successful extensions: 71699
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70261
Number of HSP's gapped (non-prelim): 1438
length of query: 465
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 443
effective length of database: 17,147,199,772
effective search space: 7596209498996
effective search space used: 7596209498996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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