>RHOX5_RAT (Q63630) Homeobox protein Rhox5 (Reproductive homeobox on|
           chromosome X 5) (Homeobox protein Pem) (Placenta and
           embryonic expression protein)
          Length = 211

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = -3

Query: 288 RRPPGTCRTTCSRRRDMLPSGTPSGGRRLGTSWESAC 178
           RRP  T R      R +L SG+ SGGR L   W S C
Sbjct: 122 RRPGSTQRRLAELERILLSSGSSSGGRSLIDGWISVC 158

>YFCJ_SALTY (Q8ZNB8) UPF0226 protein yfcJ|
          Length = 392

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = +3

Query: 264 YGTFPVAAVSSLIALGSIALCWLAPK------GALSSNLLCSLIRPA 386
           +G   VA VS L+    + L WLAP       GA  +   CSLI PA
Sbjct: 276 FGGVKVAVVSLLVETAGLLLLWLAPTAWIALVGAALTGAGCSLIFPA 322

>VP13B_HUMAN (Q7Z7G8) Vacuolar protein sorting 13B (Cohen syndrome protein 1)|
          Length = 4022

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 337  GASQHNAIDPSAMSELTAATGNVPYDVFSSARHAAL 230
            GASQH    PS  S +      +P+D+F +A   +L
Sbjct: 1813 GASQHRIARPSRQSSIVKNLNFIPFDIFITASRISL 1848

>GLI4_HUMAN (P10075) Zinc finger protein GLI4 (Krueppel-related zinc finger|
           protein 4) (HKR4 protein)
          Length = 376

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 19/78 (24%), Positives = 32/78 (41%)
 Frame = -3

Query: 285 RPPGTCRTTCSRRRDMLPSGTPSGGRRLGTSWESACKHSAHLRYMGGFSLRWHACSSCM* 106
           +P G  R T  ++    P G P     LG ++  + + SA          + H C +C  
Sbjct: 138 QPRGAWRVTLVQQAAAGPEGAPERAAELGVNFGRSRQGSAR-------GAKPHRCEACGK 190

Query: 105 AWRYEE*CLIHPRLRKHE 52
           +++Y    L H R+   E
Sbjct: 191 SFKYNSLLLKHQRIHTGE 208

>YB2A_SCHPO (P87311) Hypothetical zinc finger MYND domain-containing protein|
           C31F10.10c
          Length = 574

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
 Frame = -2

Query: 391 NSAGRINEHNKFDDR--------APFGASQHNAIDPSAMSELTAATGNVPYDVFSSARHA 236
           NS   +++HN   D         +PFGAS  ++      S     +G+V     S+ RH+
Sbjct: 163 NSLDSVSQHNSSADSLFVNGDVPSPFGASTASSSSRRVYSVDLRDSGDVQLPNQSTFRHS 222

Query: 235 ALRDAVGREET 203
             RD +G   T
Sbjct: 223 VNRDLLGSSST 233

>MNTH_MYCBO (O69443) Probable manganese transport protein mntH (BRAMP)|
          Length = 684

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = -3

Query: 297 ASSRRPPGTCRTTCSRRRDMLPSGTPSGGRRLGTSWESACKHSAHLRYM--GGFSLRWHA 124
           A   R P   R T        PSGTP+ GR   T    + + S   R++  G F L  H 
Sbjct: 212 AQMLRAPAASRPTAINA----PSGTPAAGRTSPTPTTDSQRRSRVARWLVAGEFRLLSHL 267

Query: 123 CS 118
           CS
Sbjct: 268 CS 269

>JAG2_MOUSE (Q9QYE5) Jagged-2 precursor (Jagged2)|
          Length = 1247

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = -3

Query: 315  STPAQ*ASSRRPPGTCRTTCSRRRDMLPSGTPSGGRRLGTSWESACKHSAHLRYM 151
            STP Q  SS       R T    RD +P GT  G    G     A + +AH R +
Sbjct: 958  STPCQPRSSHLDNNCARLTLRFNRDQVPQGTTVGAICSGIRALPATRAAAHDRLL 1012

>COBS_SYNP7 (Q8GMS2) Cobalamin synthase (EC 2.-.-.-)|
          Length = 251

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 210 SLPTASLRAACRADENTSYGTFPVAAVSSLIALGSIALCWL-APKGAL 350
           ++P    R    +D +T  G F   A  ++I+L +IALC+L AP+  L
Sbjct: 92  AVPNPDRRLEVMSDSHT--GAFGAIAAIAIISLKTIALCYLPAPRSLL 137

>YFCJ_SALTI (Q8Z4Z9) UPF0226 protein yfcJ|
          Length = 392

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
 Frame = +3

Query: 264 YGTFPVAAVSSLIALGSIALCWLAPK------GALSSNLLCSLI 377
           +G   VA VS L+    + L WLAP       GA  +   CSLI
Sbjct: 276 FGGVKVAVVSLLVETAGLLLLWLAPTAWIALVGAALTGAGCSLI 319

>PLB3_CANAL (Q9UVX1) Lysophospholipase 3 precursor (EC 3.1.1.5) (Phospholipase|
           B 3)
          Length = 754

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -2

Query: 343 PFGASQHNAIDPSAMSELTAATGNVPYDVF---SSARHAALRDAVGREETRDFLGVGMQA 173
           PF +S  ++   S+ SE  ++ G  P+D+F   SS   ++   A   + T D       +
Sbjct: 22  PFDSSGSSSSSDSSPSETGSSGGTFPFDLFGSGSSLTQSSSAQASSTKSTSDSASSTDSS 81

Query: 172 LCSSSIHG 149
           L SSS  G
Sbjct: 82  LFSSSNSG 89

>VIP_MOUSE (P32648) VIP peptides precursor [Contains: Intestinal peptide|
           PHI-42; Intestinal peptide PHI-27 (Peptide histidine
           isoleucinamide 27); Vasoactive intestinal peptide (VIP)
           (Vasoactive intestinal polypeptide)]
          Length = 170

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -2

Query: 361 KFDDRAPF-GASQHNAIDPSAMSELT----AATGNVPYDVFSSARHA 236
           + DDR PF GA   + +   A S++     A  G   YDV  +ARHA
Sbjct: 36  RLDDRMPFEGAGDPDQVSLKADSDILQNPLAENGTPYYDVSRNARHA 82

>OSTC_XENTR (Q6DJ00) Osteocalcin precursor (Gamma-carboxyglutamic|
           acid-containing protein) (Bone Gla-protein) (BGP)
          Length = 101

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 134 GGMHVHHACKRGDTRSSV*FIRGYVSMNHARSYATS 27
           GG    H+   GD+RSS  FI    S N AR +  S
Sbjct: 18  GGKDSQHSASAGDSRSSEAFISRQDSANFARRHKRS 53

>OXAA_CHLTE (Q8KGG2) Inner membrane protein oxaA|
          Length = 590

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +3

Query: 168 QSACMPTPKKSLVSSLPTASLRAACRADENTSYGTFPVAAVSSLIALGSIALCWLAPKGA 347
           + A   TP  +L +  P+A++ AA RAD   S+    V    ++     +    L+ KGA
Sbjct: 38  REAVQKTPAAALPA--PSAAVAAAARADSLGSFAQASVGTEKTITVSNDLFTATLSSKGA 95

Query: 348 LSSNLL 365
              +L+
Sbjct: 96  TLKSLV 101

>MSLN_HUMAN (Q13421) Mesothelin precursor (CAK1 antigen)|
          Length = 628

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -2

Query: 376 INEHNKFDDRAPFGASQHNAIDPSAMSELTAATGNVPYDVFSSARHAALRDAV--GREET 203
           +++ N   D A F   + +A+ P  ++E+    G     + +  RH  +RD +   R++ 
Sbjct: 517 LSQQNVSMDLATFMKLRTDAVLPLTVAEVQKLLGPHVEGLKAEERHRPVRDWILRQRQDD 576

Query: 202 RDFLGVGMQ 176
            D LG+G+Q
Sbjct: 577 LDTLGLGLQ 585


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,363,992
Number of Sequences: 219361
Number of extensions: 1098738
Number of successful extensions: 3153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3151
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)