ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart13g02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF297044.1| Zea mays homocysteine S-methyltransferase-1 mRNA, complete cds Length = 1275 Score = 131 bits (66), Expect = 3e-27 Identities = 147/174 (84%) Strand = Plus / Minus Query: 358 ggcgtcgtgcggcagcatcctcccaccaggctggcgccggcctcctgccacctcctcgcc 417 ||||| || |||||||| ||||| | |||||||| || ||||||||||| ||| |||| Sbjct: 1025 ggcgttgtccggcagcaccctccgatgaggctggcccccgcctcctgccatctcttcgcg 966 Query: 418 atcgcgtcgaagctcttgcggccgaagcactccaccggcagccaccgcttggctctcccg 477 | ||||||||||| ||| | || |||||||| ||||||||||||| ||| ||||||||| Sbjct: 965 agagcgtcgaagcttttgtgacccaagcactcaaccggcagccacctcttcgctctcccg 906 Query: 478 tcccagacctcgccgctgttcgggtacaccgcgatcgccttctccgtttgcttc 531 ||||| || ||||||||||||||||| || || |||||||||| ||||||||| Sbjct: 905 tcccaaacttcgccgctgttcgggtaaactgcaatcgccttcttggtttgcttc 852
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 113 bits (57), Expect = 6e-22 Identities = 102/117 (87%) Strand = Plus / Minus Query: 332 ccttggacaccgcccggatggtcgacggcgtcgtgcggcagcatcctcccaccaggctgg 391 ||||||| || |||||||| |||||||||||||| ||||||||||| || || | ||| | Sbjct: 6325754 ccttggagacggcccggatcgtcgacggcgtcgtccggcagcatccgccgactaagctcg 6325695 Query: 392 cgccggcctcctgccacctcctcgccatcgcgtcgaagctcttgcggccgaagcact 448 |||||||||||||||||||| |||| | |||||||||||||||| | || ||||||| Sbjct: 6325694 cgccggcctcctgccacctcttcgcgagcgcgtcgaagctcttgtgcccaaagcact 6325638 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 456 cagccaccgcttggctctcccgtcccagacctcgccgctgttcgggtacaccgcgatcgc 515 |||||| | ||| ||||| |||||||| | |||||||||||||||||||||||||||||| Sbjct: 6325457 cagccatctcttcgctctgccgtcccaaatctcgccgctgttcgggtacaccgcgatcgc 6325398 Query: 516 cttctccgtttgct 529 ||||| ||||||| Sbjct: 6325397 cttcttggtttgct 6325384
>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09, complete sequence Length = 146568 Score = 113 bits (57), Expect = 6e-22 Identities = 102/117 (87%) Strand = Plus / Minus Query: 332 ccttggacaccgcccggatggtcgacggcgtcgtgcggcagcatcctcccaccaggctgg 391 ||||||| || |||||||| |||||||||||||| ||||||||||| || || | ||| | Sbjct: 5880 ccttggagacggcccggatcgtcgacggcgtcgtccggcagcatccgccgactaagctcg 5821 Query: 392 cgccggcctcctgccacctcctcgccatcgcgtcgaagctcttgcggccgaagcact 448 |||||||||||||||||||| |||| | |||||||||||||||| | || ||||||| Sbjct: 5820 cgccggcctcctgccacctcttcgcgagcgcgtcgaagctcttgtgcccaaagcact 5764 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 456 cagccaccgcttggctctcccgtcccagacctcgccgctgttcgggtacaccgcgatcgc 515 |||||| | ||| ||||| |||||||| | |||||||||||||||||||||||||||||| Sbjct: 5583 cagccatctcttcgctctgccgtcccaaatctcgccgctgttcgggtacaccgcgatcgc 5524 Query: 516 cttctccgtttgct 529 ||||| ||||||| Sbjct: 5523 cttcttggtttgct 5510
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 113 bits (57), Expect = 6e-22 Identities = 102/117 (87%) Strand = Plus / Minus Query: 332 ccttggacaccgcccggatggtcgacggcgtcgtgcggcagcatcctcccaccaggctgg 391 ||||||| || |||||||| |||||||||||||| ||||||||||| || || | ||| | Sbjct: 6324967 ccttggagacggcccggatcgtcgacggcgtcgtccggcagcatccgccgactaagctcg 6324908 Query: 392 cgccggcctcctgccacctcctcgccatcgcgtcgaagctcttgcggccgaagcact 448 |||||||||||||||||||| |||| | |||||||||||||||| | || ||||||| Sbjct: 6324907 cgccggcctcctgccacctcttcgcgagcgcgtcgaagctcttgtgcccaaagcact 6324851 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 456 cagccaccgcttggctctcccgtcccagacctcgccgctgttcgggtacaccgcgatcgc 515 |||||| | ||| ||||| |||||||| | |||||||||||||||||||||||||||||| Sbjct: 6324670 cagccatctcttcgctctgccgtcccaaatctcgccgctgttcgggtacaccgcgatcgc 6324611 Query: 516 cttctccgtttgct 529 ||||| ||||||| Sbjct: 6324610 cttcttggtttgct 6324597 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 ggctggcgccggcctcctgccacc 409 ||||||||||| |||||||||||| Sbjct: 24761764 ggctggcgccgtcctcctgccacc 24761787
>gb|AC104474.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024O21, complete sequence Length = 155651 Score = 113 bits (57), Expect = 6e-22 Identities = 102/117 (87%) Strand = Plus / Minus Query: 332 ccttggacaccgcccggatggtcgacggcgtcgtgcggcagcatcctcccaccaggctgg 391 ||||||| || |||||||| |||||||||||||| ||||||||||| || || | ||| | Sbjct: 138962 ccttggagacggcccggatcgtcgacggcgtcgtccggcagcatccgccgactaagctcg 138903 Query: 392 cgccggcctcctgccacctcctcgccatcgcgtcgaagctcttgcggccgaagcact 448 |||||||||||||||||||| |||| | |||||||||||||||| | || ||||||| Sbjct: 138902 cgccggcctcctgccacctcttcgcgagcgcgtcgaagctcttgtgcccaaagcact 138846 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 456 cagccaccgcttggctctcccgtcccagacctcgccgctgttcgggtacaccgcgatcgc 515 |||||| | ||| ||||| |||||||| | |||||||||||||||||||||||||||||| Sbjct: 138665 cagccatctcttcgctctgccgtcccaaatctcgccgctgttcgggtacaccgcgatcgc 138606 Query: 516 cttctccgtttgct 529 ||||| ||||||| Sbjct: 138605 cttcttggtttgct 138592
>dbj|AK068002.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128N24, full insert sequence Length = 1589 Score = 113 bits (57), Expect = 6e-22 Identities = 102/117 (87%) Strand = Plus / Minus Query: 332 ccttggacaccgcccggatggtcgacggcgtcgtgcggcagcatcctcccaccaggctgg 391 ||||||| || |||||||| |||||||||||||| ||||||||||| || || | ||| | Sbjct: 1269 ccttggagacggcccggatcgtcgacggcgtcgtccggcagcatccgccgactaagctcg 1210 Query: 392 cgccggcctcctgccacctcctcgccatcgcgtcgaagctcttgcggccgaagcact 448 |||||||||||||||||||| |||| | |||||||||||||||| | || ||||||| Sbjct: 1209 cgccggcctcctgccacctcttcgcgagcgcgtcgaagctcttgtgcccaaagcact 1153 Score = 99.6 bits (50), Expect = 9e-18 Identities = 80/90 (88%) Strand = Plus / Minus Query: 456 cagccaccgcttggctctcccgtcccagacctcgccgctgttcgggtacaccgcgatcgc 515 |||||| | ||| ||||| |||||||| | |||||||||||||||||||||||||||||| Sbjct: 972 cagccatctcttcgctctgccgtcccaaatctcgccgctgttcgggtacaccgcgatcgc 913 Query: 516 cttctccgtttgcttcttgaagtcgcgtat 545 ||||| ||||||||||||| |||||||| Sbjct: 912 cttcttggtttgcttcttgagctcgcgtat 883
>gb|AY111638.1| Zea mays CL1145_1 mRNA sequence Length = 1228 Score = 109 bits (55), Expect = 1e-20 Identities = 97/111 (87%) Strand = Plus / Minus Query: 421 gcgtcgaagctcttgcggccgaagcactccaccggcagccaccgcttggctctcccgtcc 480 ||||||||||| ||| | || |||||||| ||||||||||||| ||| |||||||||||| Sbjct: 962 gcgtcgaagcttttgtgacccaagcactcaaccggcagccacctcttcgctctcccgtcc 903 Query: 481 cagacctcgccgctgttcgggtacaccgcgatcgccttctccgtttgcttc 531 || || ||||||||||||||||| || || |||||||||| ||||||||| Sbjct: 902 caaacttcgccgctgttcgggtaaactgcaatcgccttcttggtttgcttc 852
>gb|AC122342.4| Mus musculus BAC clone RP23-357O17 from chromosome 8, complete sequence Length = 199412 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 279 gactctgaacttctgaagaaga 300 |||||||||||||||||||||| Sbjct: 110854 gactctgaacttctgaagaaga 110833
>ref|NM_190769.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 630 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 606 aggctggcgccgtcctcctgccacc 582
>gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_B02, complete sequence Length = 99795 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 75979 aggctggcgccgtcctcctgccacc 75955
>gb|AC135121.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0089M05, complete sequence Length = 131308 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 46681 aggctggcgccgtcctcctgccacc 46657
>gb|AC129227.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0099J16, complete sequence Length = 133198 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 56483 aggctggcgccgtcctcctgccacc 56459
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 348 gatggtcgacggcgtcgtgcggcag 372 |||||||||||||||||||| |||| Sbjct: 1718378 gatggtcgacggcgtcgtgccgcag 1718402
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 23455165 aggctggcgccgtcctcctgccacc 23455189
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 5794756 aggctggcgccgtcctcctgccacc 5794780
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 25948483 aggctggcgccgtcctcctgccacc 25948507 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 16878935 aggctggcgccgtcctcctgccacc 16878911
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 20310865 aggctggcgccgtcctcctgccacc 20310889 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 ggctggcgccggcctcctgccacc 409 ||||||||||| |||||||||||| Sbjct: 16077506 ggctggcgccgtcctcctgccacc 16077529 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 ggctggcgccggcctcctgccacc 409 ||||||||||| |||||||||||| Sbjct: 10795907 ggctggcgccgtcctcctgccacc 10795930 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 390 ggcgccggcctcctgccacctcctcgcc 417 ||||||||||||| ||||||||| |||| Sbjct: 4321169 ggcgccggcctcccgccacctccgcgcc 4321196 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 catcctgaattcctgatgga 96 |||||||||||||||||||| Sbjct: 4216576 catcctgaattcctgatgga 4216557
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 24473306 aggctggcgccgtcctcctgccacc 24473282 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 gaacatcctgaattcctgat 93 |||||||||||||||||||| Sbjct: 19822372 gaacatcctgaattcctgat 19822353
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 37604106 aggctggcgccgtcctcctgccacc 37604130 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 2773777 aggctggcgccgtcctcctgccacc 2773801 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 385 aggctggcgccggcctcctgccac 408 |||||||||||| ||||||||||| Sbjct: 27532542 aggctggcgccgtcctcctgccac 27532565 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ggctggcgccggcctcctgccacc 409 ||||||||||| |||||||||||| Sbjct: 22069955 ggctggcgccgtcctcctgccacc 22069932
>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0677H08 Length = 178830 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 64580 aggctggcgccgtcctcctgccacc 64604
>dbj|AP002522.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0009G03 Length = 163526 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 79454 aggctggcgccgtcctcctgccacc 79478
>dbj|AP005105.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0052O11 Length = 106467 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 53476 aggctggcgccgtcctcctgccacc 53500
>dbj|AP004573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0678G09 Length = 139220 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 19765 aggctggcgccgtcctcctgccacc 19789
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 381 caccaggctggcgccggcctc 401 ||||||||||||||||||||| Sbjct: 1773325 caccaggctggcgccggcctc 1773305
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 26267181 aggctggcgccgtcctcctgccacc 26267205 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 16972706 aggctggcgccgtcctcctgccacc 16972682
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 5794749 aggctggcgccgtcctcctgccacc 5794773
>emb|AL954853.5|CNS08CD7 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159056 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 149279 aggctggcgccgtcctcctgccacc 149303
>emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21, complete sequence Length = 139298 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 385 aggctggcgccggcctcctgccacc 409 |||||||||||| |||||||||||| Sbjct: 11068 aggctggcgccgtcctcctgccacc 11092
>gb|AY676165.1| Haloferax volcanii FolC-P protein gene, complete cds Length = 2517 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 caccgcccggatggtcgacg 358 |||||||||||||||||||| Sbjct: 156 caccgcccggatggtcgacg 175
>gb|AC137928.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0040B10, complete sequence Length = 150825 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 gaacatcctgaattcctgat 93 |||||||||||||||||||| Sbjct: 150446 gaacatcctgaattcctgat 150427
>ref|NM_191963.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 171 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 385 aggctggcgccggcctcctgccac 408 |||||||||||| ||||||||||| Sbjct: 61 aggctggcgccgtcctcctgccac 84
>ref|XM_477971.1| Oryza sativa (japonica cultivar-group), mRNA Length = 168 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ggctggcgccggcctcctgccacc 409 ||||||||||| |||||||||||| Sbjct: 68 ggctggcgccgtcctcctgccacc 45
>ref|XM_476868.1| Oryza sativa (japonica cultivar-group), mRNA Length = 585 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 390 ggcgccggcctcctgccacctcctcgcc 417 ||||||||||||| ||||||||| |||| Sbjct: 484 ggcgccggcctcccgccacctccgcgcc 511
>ref|XM_616540.2| PREDICTED: Bos taurus similar to Bifunctional 3-phosphoadenosine 5-phosphosulfate synthethase 2 (PAPS synthethase 2) (PAPSS 2) (Sulfurylase kinase 2) (SK2) (SK 2) (LOC536409), partial mRNA Length = 826 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 65 gctatcttagaacatcctgaattc 88 |||||||||||| ||||||||||| Sbjct: 595 gctatcttagaagatcctgaattc 618
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 gatggtcgacggcgtcgtgc 367 |||||||||||||||||||| Sbjct: 1695637 gatggtcgacggcgtcgtgc 1695618
>gb|AC137620.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0014K18, complete sequence Length = 123508 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 gaacatcctgaattcctgat 93 |||||||||||||||||||| Sbjct: 74996 gaacatcctgaattcctgat 74977
>gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox cluster, cholinesterase, and COLP5alpha genes, complete sequence Length = 796348 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaatcatgattacatcataa 20 |||||||||||||||||||| Sbjct: 87226 aaatcatgattacatcataa 87207
>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183327 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 ggctggcgccggcctcctgccacc 409 ||||||||||| |||||||||||| Sbjct: 140453 ggctggcgccgtcctcctgccacc 140476
>ref|XM_686051.1| PREDICTED: Danio rerio similar to Myosin Vc (Myosin 5C) (LOC562676), partial mRNA Length = 3851 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 tgatggactgatttttgtta 109 |||||||||||||||||||| Sbjct: 1107 tgatggactgatttttgtta 1088
>ref|XM_696779.1| PREDICTED: Danio rerio hypothetical protein LOC554674 (LOC554674), mRNA Length = 1533 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 cccgtcccagacctcgccgc 493 |||||||||||||||||||| Sbjct: 635 cccgtcccagacctcgccgc 654
>ref|NM_001020598.1| Danio rerio zgc:110551 (zgc:110551), mRNA Length = 1945 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 cccgtcccagacctcgccgc 493 |||||||||||||||||||| Sbjct: 1027 cccgtcccagacctcgccgc 1046
>gb|BC095307.1| Danio rerio zgc:110551, mRNA (cDNA clone MGC:110551 IMAGE:7157691), complete cds Length = 1945 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 cccgtcccagacctcgccgc 493 |||||||||||||||||||| Sbjct: 1027 cccgtcccagacctcgccgc 1046
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 ggctggcgccggcctcctgccacc 409 ||||||||||| |||||||||||| Sbjct: 15868525 ggctggcgccgtcctcctgccacc 15868548
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 476 cgtcccagacctcgccgctgttcgggta 503 |||||||| |||||||||||||||||| Sbjct: 2575357 cgtcccaggtctcgccgctgttcgggta 2575330
>dbj|AP005256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0038F09 Length = 166568 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 ggctggcgccggcctcctgccacc 409 ||||||||||| |||||||||||| Sbjct: 47839 ggctggcgccgtcctcctgccacc 47862
>dbj|AP004131.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1057_F01 Length = 120026 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 ggctggcgccggcctcctgccacc 409 ||||||||||| |||||||||||| Sbjct: 12200 ggctggcgccgtcctcctgccacc 12223
>dbj|AP003706.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1125_C04 Length = 98476 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 385 aggctggcgccggcctcctgccac 408 |||||||||||| ||||||||||| Sbjct: 53245 aggctggcgccgtcctcctgccac 53268
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 cccaccaggctggcgccggc 398 |||||||||||||||||||| Sbjct: 3895234 cccaccaggctggcgccggc 3895215 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 ctcccaccaggctggcgccg 396 |||||||||||||||||||| Sbjct: 3709448 ctcccaccaggctggcgccg 3709429
>dbj|AP003413.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1151A10 Length = 124344 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 ggctggcgccggcctcctgccacc 409 ||||||||||| |||||||||||| Sbjct: 81468 ggctggcgccgtcctcctgccacc 81445
>dbj|AP005260.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0557D09 Length = 135315 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 ggctggcgccggcctcctgccacc 409 ||||||||||| |||||||||||| Sbjct: 125353 ggctggcgccgtcctcctgccacc 125376
>dbj|AP005100.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0018O23 Length = 142143 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 ggctggcgccggcctcctgccacc 409 ||||||||||| |||||||||||| Sbjct: 6666 ggctggcgccgtcctcctgccacc 6689
>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1014_E09 Length = 184624 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 390 ggcgccggcctcctgccacctcctcgcc 417 ||||||||||||| ||||||||| |||| Sbjct: 142223 ggcgccggcctcccgccacctccgcgcc 142250 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 catcctgaattcctgatgga 96 |||||||||||||||||||| Sbjct: 37630 catcctgaattcctgatgga 37611
>emb|AL954697.15| Zebrafish DNA sequence from clone CH211-286K11 in linkage group 25, complete sequence Length = 134798 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tgatggactgatttttgtta 109 |||||||||||||||||||| Sbjct: 115323 tgatggactgatttttgtta 115342
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 acctcctcaggacaacacac 262 |||||||||||||||||||| Sbjct: 267245 acctcctcaggacaacacac 267226 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,447,438 Number of Sequences: 3902068 Number of extensions: 4447438 Number of successful extensions: 78225 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77086 Number of HSP's gapped (non-prelim): 1139 length of query: 545 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 522 effective length of database: 17,143,297,704 effective search space: 8948801401488 effective search space used: 8948801401488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
