ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart13f05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ574850.2|HVU574850 Hordeum vulgare bcat-1 gene for branche... 615 e-173
2emb|AJ622895.1| Triticum durum partial mRNA for DRP3 protein (dr... 283 3e-73
3ref|XM_470612.1| Oryza sativa (japonica cultivar-group), predic... 188 1e-44
4dbj|AK120579.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 1e-44
5dbj|AK105963.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 1e-44
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 88 3e-14
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
8gb|AC105927.2| Oryza sativa (japonica cultivar-group) chromosome... 88 3e-14
9gb|AC135157.2| Oryza sativa (japonica cultivar-group) chromosome... 88 3e-14
10ref|XM_467440.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.45
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.45
12dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.45
13dbj|AK107391.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.45
14gb|AC102532.12| Mus musculus chromosome 12, clone RP23-49D23, co... 42 1.8
15gb|AF547699.1| Lysimachia heterogenea internal transcribed space... 42 1.8
16emb|CR536601.8| Platypus DNA sequence from clone XX-307A9, compl... 42 1.8
17gb|AC102626.9| Mus musculus chromosome 12, clone RP23-456E21, co... 42 1.8
18gb|AC023296.6| Homo sapiens chromosome 8, clone RP11-564K14, com... 42 1.8
19gb|AC053479.8| Homo sapiens chromosome 8, clone RP11-782A18, com... 42 1.8
20gb|AC091010.5| Homo sapiens chromosome 8, clone RP11-680F23, com... 42 1.8
21gb|AY048850.1| Halobacterium salinarum strain J7 plasmid pHH205,... 42 1.8
22gb|AC019274.5|AC019274 Homo sapiens, clone RP11-11P7, complete s... 42 1.8
23gb|AC115485.3| Homo sapiens chromosome 8, clone GS1-57L11, compl... 42 1.8
24gb|AE004988.1| Halobacterium sp. NRC-1 section 19 of 170 of the ... 42 1.8
25ref|XM_480381.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.0
26gb|AC007864.5| Trypanosoma brucei chromosome 2 clone RPCI93-28H1... 40 7.0
27gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence 40 7.0
28gb|AC146447.3| Pan troglodytes BAC clone RP43-4N6 from 7, comple... 40 7.0
29ref|NM_001032492.1| Ciona intestinalis alcohol dehydrogenase cla... 40 7.0
30gb|AC006966.3| Homo sapiens PAC clone RP4-563H24 from 7, complet... 40 7.0
31emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete ch... 40 7.0
32gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 7.0
33emb|AL049565.3|HS751D22 Human DNA sequence from clone RP4-751D22... 40 7.0
34emb|AL021395.16|HS269M15 Human DNA sequence from clone RP1-269M1... 40 7.0
35emb|AL606831.17| Mouse DNA sequence from clone RP23-432M23 on ch... 40 7.0
36emb|CR749163.11| Zebrafish DNA sequence from clone CH211-216B21 ... 40 7.0
37gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 7.0
38gb|AC003673.3| Arabidopsis thaliana chromosome 2 clone F19F24 ma... 40 7.0
39gb|AF169823.1| Spodoptera exigua nucleopolyhedrovirus complete g... 40 7.0
40gb|AF344173.1| Ciona intestinalis alcohol dehydrogenase class 3 ... 40 7.0
41gb|AF344172.1| Ciona intestinalis alcohol dehydrogenase class 3 ... 40 7.0
42gb|CP000249.1| Frankia sp. CcI3, complete genome 40 7.0
43gb|AC010290.7| Homo sapiens chromosome 5 clone CTB-125B20, compl... 40 7.0
44dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
45gb|AC155252.2| Mus musculus BAC clone RP24-190H19 from chromosom... 40 7.0
46gb|AC009469.4| Homo sapiens BAC clone RP11-20N16 from 2, complet... 40 7.0
47emb|BX321894.8| Zebrafish DNA sequence from clone DKEYP-56B7 in ... 40 7.0
48gb|AC154843.2| Mus musculus BAC clone RP23-58N15 from chromosome... 40 7.0
49dbj|AP004692.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
50gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 40 7.0
51emb|CR391974.8| Zebrafish DNA sequence from clone CH211-59E10 in... 40 7.0
52gb|AC016968.24| Homo sapiens 3 BAC RP11-59J16 (Roswell Park Canc... 40 7.0
53gb|AC137950.16| Mus musculus chromosome 15, clone RP24-356L7, co... 40 7.0
54gb|AC004169.3|AC004169 Homo sapiens chromosome 4 clone C0236G06 ... 40 7.0
55dbj|AP003327.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.0
56gb|AC120156.9| Mus musculus chromosome 18, clone RP24-263P17, co... 40 7.0
57emb|AJ629123.1| Streptomyces sp. DSM 40477 genomic region of the... 40 7.0 
>emb|AJ574850.2|HVU574850 Hordeum vulgare bcat-1 gene for branched-chain amino acid
            aminotransferase, exons 1-7
          Length = 4318

 Score =  615 bits (310), Expect = e-173
 Identities = 310/310 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    ggcaaataagtgtcaagcagatcgatttctttccgtgcccaaatttgaagccgctgatga 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4229 ggcaaataagtgtcaagcagatcgatttctttccgtgcccaaatttgaagccgctgatga 4170

                                                                        
Query: 61   ccggggcacgtaactttcaaattctagcgcgagatatgatcaccatgataattattcaca 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4169 ccggggcacgtaactttcaaattctagcgcgagatatgatcaccatgataattattcaca 4110

                                                                        
Query: 121  tttgcaaagataatactaaaacaatactggatgcttctggcgctgcatgcgcccatgctc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4109 tttgcaaagataatactaaaacaatactggatgcttctggcgctgcatgcgcccatgctc 4050

                                                                        
Query: 181  ttttcctaatcaatcaatcaatcgctaccgtccatcctttcttgtcctctgccagcccca 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4049 ttttcctaatcaatcaatcaatcgctaccgtccatcctttcttgtcctctgccagcccca 3990

                                                                        
Query: 241  tctggatcgatgtgagagtcgtgtacaatttcctcgacaacgtgtcttccccagtcctga 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3989 tctggatcgatgtgagagtcgtgtacaatttcctcgacaacgtgtcttccccagtcctga 3930

                      
Query: 301  actcgtgcct 310
            ||||||||||
Sbjct: 3929 actcgtgcct 3920



 Score =  232 bits (117), Expect = 9e-58
 Identities = 117/117 (100%)
 Strand = Plus / Minus

                                                                        
Query: 308  ccttgtcccttggtaggtgatggtcgacaccggggtgacgccgacggccgttcccgtgca 367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3818 ccttgtcccttggtaggtgatggtcgacaccggggtgacgccgacggccgttcccgtgca 3759

                                                                     
Query: 368  gaacacttcgtctgcgccgacgagatcgtcgatggagacgaggcgctcttcgacctg 424
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3758 gaacacttcgtctgcgccgacgagatcgtcgatggagacgaggcgctcttcgacctg 3702



 Score =  198 bits (100), Expect = 1e-47
 Identities = 100/100 (100%)
 Strand = Plus / Minus

                                                                        
Query: 417  tcgacctggtagccgtcatccctggcgagctcgatgatgctcctgcgcgtgacacccggc 476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3612 tcgacctggtagccgtcatccctggcgagctcgatgatgctcctgcgcgtgacacccggc 3553

                                                    
Query: 477  aggatggtccctgccgtcgtcgccggcgtcgcgacggcgc 516
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3552 aggatggtccctgccgtcgtcgccggcgtcgcgacggcgc 3513
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>emb|AJ622895.1| Triticum durum partial mRNA for DRP3 protein (drg3 gene)
          Length = 469

 Score =  283 bits (143), Expect = 3e-73
 Identities = 193/209 (92%), Gaps = 3/209 (1%)
 Strand = Plus / Minus

                                                                       
Query: 308 ccttgtcccttggtaggtgatggtcgacaccggggtgacgccgacggccgttcccgtgca 367
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 469 ccttgtcccttggtaggtgatggtggacaccggggtgacgccgacggccgttcccgtgca 410

                                                                       
Query: 368 gaacacttcgtctgcgccgacgagatcgtcgatggagacgaggcgctcttcgacctggta 427
           |||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gaacacttcgtcggcactgacgagatcgtcgatggagacgaggcgctcttcgacctggta 350

                                                                       
Query: 428 gccgtcatccctggcgagctcgatgatgctcctgcgcgtgacacccggcaggatggtccc 487
           ||||   || ||||||||||||||||||||||  |||||||| |||||||||||||||| 
Sbjct: 349 gccgctgtctctggcgagctcgatgatgctccgacgcgtgacccccggcaggatggtcc- 291

                                        
Query: 488 tgccgtcgtcgccggcgtcgcgacggcgc 516
             ||  |||||||||||||||||||||||
Sbjct: 290 --cctccgtcgccggcgtcgcgacggcgc 264
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>ref|XM_470612.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1248

 Score =  188 bits (95), Expect = 1e-44
 Identities = 230/275 (83%)
 Strand = Plus / Minus

                                                                        
Query: 210  gtccatcctttcttgtcctctgccagccccatctggatcgatgtgagagtcgtgtacaat 269
            |||||||||||||||||||| ||||| ||||||||||| || || |||||||||| || |
Sbjct: 1232 gtccatcctttcttgtcctcagccaggcccatctggatggacgtcagagtcgtgtgcagt 1173

                                                                        
Query: 270  ttcctcgacaacgtgtcttccccagtcctgaactcgtgccttgtcccttggtaggtgatg 329
             ||  ||| |||||||| |  |||||||||||||||| ||||  ||| ||||| || |  
Sbjct: 1172 gtctgcgataacgtgtcatgtccagtcctgaactcgtacctttgcccatggtaagtaaca 1113

                                                                        
Query: 330  gtcgacaccggggtgacgccgacggccgttcccgtgcagaacacttcgtctgcgccgacg 389
             |||| || ||||  ||| | || || ||||| ||||||||||| |||||||||||||| 
Sbjct: 1112 ctcgatactggggcaacgaccaccgctgttccggtgcagaacacctcgtctgcgccgacc 1053

                                                                        
Query: 390  agatcgtcgatggagacgaggcgctcttcgacctggtagccgtcatccctggcgagctcg 449
            |||||||||||||||||||| || ||||| ||||| ||||||   |||||||||||||||
Sbjct: 1052 agatcgtcgatggagacgagccgttcttcaacctgatagccgcggtccctggcgagctcg 993

                                               
Query: 450  atgatgctcctgcgcgtgacacccggcaggatggt 484
            |||| |||| |||||||||  ||||||||||||||
Sbjct: 992  atgacgctcttgcgcgtgatccccggcaggatggt 958
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>dbj|AK120579.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135J09, full
            insert sequence
          Length = 1738

 Score =  188 bits (95), Expect = 1e-44
 Identities = 230/275 (83%)
 Strand = Plus / Minus

                                                                        
Query: 210  gtccatcctttcttgtcctctgccagccccatctggatcgatgtgagagtcgtgtacaat 269
            |||||||||||||||||||| ||||| ||||||||||| || || |||||||||| || |
Sbjct: 1352 gtccatcctttcttgtcctcagccaggcccatctggatggacgtcagagtcgtgtgcagt 1293

                                                                        
Query: 270  ttcctcgacaacgtgtcttccccagtcctgaactcgtgccttgtcccttggtaggtgatg 329
             ||  ||| |||||||| |  |||||||||||||||| ||||  ||| ||||| || |  
Sbjct: 1292 gtctgcgataacgtgtcatgtccagtcctgaactcgtacctttgcccatggtaagtaaca 1233

                                                                        
Query: 330  gtcgacaccggggtgacgccgacggccgttcccgtgcagaacacttcgtctgcgccgacg 389
             |||| || ||||  ||| | || || ||||| ||||||||||| |||||||||||||| 
Sbjct: 1232 ctcgatactggggcaacgaccaccgctgttccggtgcagaacacctcgtctgcgccgacc 1173

                                                                        
Query: 390  agatcgtcgatggagacgaggcgctcttcgacctggtagccgtcatccctggcgagctcg 449
            |||||||||||||||||||| || ||||| ||||| ||||||   |||||||||||||||
Sbjct: 1172 agatcgtcgatggagacgagccgttcttcaacctgatagccgcggtccctggcgagctcg 1113

                                               
Query: 450  atgatgctcctgcgcgtgacacccggcaggatggt 484
            |||| |||| |||||||||  ||||||||||||||
Sbjct: 1112 atgacgctcttgcgcgtgatccccggcaggatggt 1078
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>dbj|AK105963.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-E04, full
            insert sequence
          Length = 1577

 Score =  188 bits (95), Expect = 1e-44
 Identities = 230/275 (83%)
 Strand = Plus / Minus

                                                                        
Query: 210  gtccatcctttcttgtcctctgccagccccatctggatcgatgtgagagtcgtgtacaat 269
            |||||||||||||||||||| ||||| ||||||||||| || || |||||||||| || |
Sbjct: 1347 gtccatcctttcttgtcctcagccaggcccatctggatggacgtcagagtcgtgtgcagt 1288

                                                                        
Query: 270  ttcctcgacaacgtgtcttccccagtcctgaactcgtgccttgtcccttggtaggtgatg 329
             ||  ||| |||||||| |  |||||||||||||||| ||||  ||| ||||| || |  
Sbjct: 1287 gtctgcgataacgtgtcatgtccagtcctgaactcgtacctttgcccatggtaagtaaca 1228

                                                                        
Query: 330  gtcgacaccggggtgacgccgacggccgttcccgtgcagaacacttcgtctgcgccgacg 389
             |||| || ||||  ||| | || || ||||| ||||||||||| |||||||||||||| 
Sbjct: 1227 ctcgatactggggcaacgaccaccgctgttccggtgcagaacacctcgtctgcgccgacc 1168

                                                                        
Query: 390  agatcgtcgatggagacgaggcgctcttcgacctggtagccgtcatccctggcgagctcg 449
            |||||||||||||||||||| || ||||| ||||| ||||||   |||||||||||||||
Sbjct: 1167 agatcgtcgatggagacgagccgttcttcaacctgatagccgcggtccctggcgagctcg 1108

                                               
Query: 450  atgatgctcctgcgcgtgacacccggcaggatggt 484
            |||| |||| |||||||||  ||||||||||||||
Sbjct: 1107 atgacgctcttgcgcgtgatccccggcaggatggt 1073
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                           
Query: 357     gttcccgtgcagaacacttcgtctgcgccgacgagatcgtcgatggagacgaggcgctct 416
               ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| || |||
Sbjct: 6919915 gttccggtgcagaacacctcgtctgcgccgaccagatcgtcgatggagacgagccgttct 6919856

                       
Query: 417     tcgacctg 424
               || |||||
Sbjct: 6919855 tcaacctg 6919848



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                           
Query: 210     gtccatcctttcttgtcctctgccagccccatctggatcgatgtgagagtcgtgtacaat 269
               |||||||||||||||||||| ||||| ||||||||||| || || |||||||||| || |
Sbjct: 6920162 gtccatcctttcttgtcctcagccaggcccatctggatggacgtcagagtcgtgtgcagt 6920103

                                                    
Query: 270     ttcctcgacaacgtgtcttccccagtcctgaactcgt 306
                ||  ||| |||||||| |  ||||||||||||||||
Sbjct: 6920102 gtctgcgataacgtgtcatgtccagtcctgaactcgt 6920066



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                 
Query: 435     tccctggcgagctcgatgatgctcctgcgcgtgacacccggcaggatggt 484
               ||||||||||||||||||| |||| |||||||||  ||||||||||||||
Sbjct: 6919685 tccctggcgagctcgatgacgctcttgcgcgtgatccccggcaggatggt 6919636
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                           
Query: 357     gttcccgtgcagaacacttcgtctgcgccgacgagatcgtcgatggagacgaggcgctct 416
               ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| || |||
Sbjct: 6917810 gttccggtgcagaacacctcgtctgcgccgaccagatcgtcgatggagacgagccgttct 6917751

                       
Query: 417     tcgacctg 424
               || |||||
Sbjct: 6917750 tcaacctg 6917743



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                           
Query: 210     gtccatcctttcttgtcctctgccagccccatctggatcgatgtgagagtcgtgtacaat 269
               |||||||||||||||||||| ||||| ||||||||||| || || |||||||||| || |
Sbjct: 6918057 gtccatcctttcttgtcctcagccaggcccatctggatggacgtcagagtcgtgtgcagt 6917998

                                                    
Query: 270     ttcctcgacaacgtgtcttccccagtcctgaactcgt 306
                ||  ||| |||||||| |  ||||||||||||||||
Sbjct: 6917997 gtctgcgataacgtgtcatgtccagtcctgaactcgt 6917961



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                 
Query: 435     tccctggcgagctcgatgatgctcctgcgcgtgacacccggcaggatggt 484
               ||||||||||||||||||| |||| |||||||||  ||||||||||||||
Sbjct: 6917580 tccctggcgagctcgatgacgctcttgcgcgtgatccccggcaggatggt 6917531
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>gb|AC105927.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1781E12,
              complete sequence
          Length = 120392

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                          
Query: 357    gttcccgtgcagaacacttcgtctgcgccgacgagatcgtcgatggagacgaggcgctct 416
              ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| || |||
Sbjct: 115848 gttccggtgcagaacacctcgtctgcgccgaccagatcgtcgatggagacgagccgttct 115789

                      
Query: 417    tcgacctg 424
              || |||||
Sbjct: 115788 tcaacctg 115781



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                          
Query: 210    gtccatcctttcttgtcctctgccagccccatctggatcgatgtgagagtcgtgtacaat 269
              |||||||||||||||||||| ||||| ||||||||||| || || |||||||||| || |
Sbjct: 116095 gtccatcctttcttgtcctcagccaggcccatctggatggacgtcagagtcgtgtgcagt 116036

                                                   
Query: 270    ttcctcgacaacgtgtcttccccagtcctgaactcgt 306
               ||  ||| |||||||| |  ||||||||||||||||
Sbjct: 116035 gtctgcgataacgtgtcatgtccagtcctgaactcgt 115999



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                
Query: 435    tccctggcgagctcgatgatgctcctgcgcgtgacacccggcaggatggt 484
              ||||||||||||||||||| |||| |||||||||  ||||||||||||||
Sbjct: 115618 tccctggcgagctcgatgacgctcttgcgcgtgatccccggcaggatggt 115569
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>gb|AC135157.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1017C11,
             complete sequence
          Length = 166072

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                         
Query: 357   gttcccgtgcagaacacttcgtctgcgccgacgagatcgtcgatggagacgaggcgctct 416
             ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| || |||
Sbjct: 86512 gttccggtgcagaacacctcgtctgcgccgaccagatcgtcgatggagacgagccgttct 86453

                     
Query: 417   tcgacctg 424
             || |||||
Sbjct: 86452 tcaacctg 86445



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                         
Query: 210   gtccatcctttcttgtcctctgccagccccatctggatcgatgtgagagtcgtgtacaat 269
             |||||||||||||||||||| ||||| ||||||||||| || || |||||||||| || |
Sbjct: 86759 gtccatcctttcttgtcctcagccaggcccatctggatggacgtcagagtcgtgtgcagt 86700

                                                  
Query: 270   ttcctcgacaacgtgtcttccccagtcctgaactcgt 306
              ||  ||| |||||||| |  ||||||||||||||||
Sbjct: 86699 gtctgcgataacgtgtcatgtccagtcctgaactcgt 86663



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                               
Query: 435   tccctggcgagctcgatgatgctcctgcgcgtgacacccggcaggatggt 484
             ||||||||||||||||||| |||| |||||||||  ||||||||||||||
Sbjct: 86282 tccctggcgagctcgatgacgctcttgcgcgtgatccccggcaggatggt 86233
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>ref|XM_467440.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2475

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 491  cgtcgtcgccggcgtcgcgacggcgc 516
            ||||||||||||||||||| ||||||
Sbjct: 1501 cgtcgtcgccggcgtcgcgtcggcgc 1526
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 491      cgtcgtcgccggcgtcgcgacggcgc 516
                ||||||||||||||||||| ||||||
Sbjct: 29535194 cgtcgtcgccggcgtcgcgtcggcgc 29535169
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>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1038_A06
          Length = 147836

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 491    cgtcgtcgccggcgtcgcgacggcgc 516
              ||||||||||||||||||| ||||||
Sbjct: 130224 cgtcgtcgccggcgtcgcgtcggcgc 130199
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>dbj|AK107391.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-C12, full
            insert sequence
          Length = 2475

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 491  cgtcgtcgccggcgtcgcgacggcgc 516
            ||||||||||||||||||| ||||||
Sbjct: 1501 cgtcgtcgccggcgtcgcgtcggcgc 1526
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>gb|AC102532.12| Mus musculus chromosome 12, clone RP23-49D23, complete sequence
          Length = 170606

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 309    cttgtcccttggtaggtgatg 329
              |||||||||||||||||||||
Sbjct: 145103 cttgtcccttggtaggtgatg 145083
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>gb|AF547699.1| Lysimachia heterogenea internal transcribed spacer 1, 5.8S
           ribosomal RNA gene, and internal transcribed spacer 2,
           complete sequence
          Length = 620

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 393 tcgtcgatggagacgaggcgc 413
           |||||||||||||||||||||
Sbjct: 577 tcgtcgatggagacgaggcgc 557
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>emb|CR536601.8| Platypus DNA sequence from clone XX-307A9, complete sequence
          Length = 191674

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 183    ttcctaatcaatcaatcaatc 203
              |||||||||||||||||||||
Sbjct: 139485 ttcctaatcaatcaatcaatc 139465
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>gb|AC102626.9| Mus musculus chromosome 12, clone RP23-456E21, complete sequence
          Length = 222905

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 309    cttgtcccttggtaggtgatg 329
              |||||||||||||||||||||
Sbjct: 218890 cttgtcccttggtaggtgatg 218910
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>gb|AC023296.6| Homo sapiens chromosome 8, clone RP11-564K14, complete sequence
          Length = 189532

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 115   ttcacatttgcaaagataata 135
             |||||||||||||||||||||
Sbjct: 19225 ttcacatttgcaaagataata 19245
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>gb|AC053479.8| Homo sapiens chromosome 8, clone RP11-782A18, complete sequence
          Length = 133053

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 311    tgtcccttggtaggtgatggt 331
              |||||||||||||||||||||
Sbjct: 105733 tgtcccttggtaggtgatggt 105753
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>gb|AC091010.5| Homo sapiens chromosome 8, clone RP11-680F23, complete sequence
          Length = 186881

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 311  tgtcccttggtaggtgatggt 331
            |||||||||||||||||||||
Sbjct: 8331 tgtcccttggtaggtgatggt 8351
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>gb|AY048850.1| Halobacterium salinarum strain J7 plasmid pHH205, complete sequence
          Length = 16341

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 491  cgtcgtcgccggcgtcgcgac 511
            |||||||||||||||||||||
Sbjct: 1903 cgtcgtcgccggcgtcgcgac 1923
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>gb|AC019274.5|AC019274 Homo sapiens, clone RP11-11P7, complete sequence
          Length = 186752

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 115   ttcacatttgcaaagataata 135
             |||||||||||||||||||||
Sbjct: 80468 ttcacatttgcaaagataata 80448
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>gb|AC115485.3| Homo sapiens chromosome 8, clone GS1-57L11, complete sequence
          Length = 169622

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 115  ttcacatttgcaaagataata 135
            |||||||||||||||||||||
Sbjct: 3228 ttcacatttgcaaagataata 3208
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>gb|AE004988.1| Halobacterium sp. NRC-1 section 19 of 170 of the complete genome
          Length = 12549

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 489  gccgtcgtcgccggcgtcgcg 509
            |||||||||||||||||||||
Sbjct: 3621 gccgtcgtcgccggcgtcgcg 3641
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>ref|XM_480381.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1416

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 487 ctgccgtcgtcgccggcgtc 506
           ||||||||||||||||||||
Sbjct: 139 ctgccgtcgtcgccggcgtc 120
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>gb|AC007864.5| Trypanosoma brucei chromosome 2 clone RPCI93-28H13, complete sequence
          Length = 160498

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   aatcaatcaatcaatcgcta 207
             ||||||||||||||||||||
Sbjct: 28809 aatcaatcaatcaatcgcta 28828
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>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence
          Length = 1193948

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    aatcaatcaatcaatcgcta 207
              ||||||||||||||||||||
Sbjct: 645138 aatcaatcaatcaatcgcta 645157
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>gb|AC146447.3| Pan troglodytes BAC clone RP43-4N6 from 7, complete sequence
          Length = 200529

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 179   tcttttcctaatcaatcaatcaat 202
             |||||||||||||||| |||||||
Sbjct: 33695 tcttttcctaatcaatgaatcaat 33718
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>ref|NM_001032492.1| Ciona intestinalis alcohol dehydrogenase class 3 (Adh3), mRNA
          Length = 1407

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 218 tttcttgtcctctgccagcc 237
           ||||||||||||||||||||
Sbjct: 992 tttcttgtcctctgccagcc 973
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>gb|AC006966.3| Homo sapiens PAC clone RP4-563H24 from 7, complete sequence
          Length = 101215

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 179   tcttttcctaatcaatcaatcaat 202
             |||||||||||||||| |||||||
Sbjct: 29235 tcttttcctaatcaatgaatcaat 29212
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>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12
          Length = 323450

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 485    ccctgccgtcgtcgccggcg 504
              ||||||||||||||||||||
Sbjct: 114928 ccctgccgtcgtcgccggcg 114947
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 183     ttcctaatcaatcaatcaat 202
               ||||||||||||||||||||
Sbjct: 1678262 ttcctaatcaatcaatcaat 1678281
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>emb|AL049565.3|HS751D22 Human DNA sequence from clone RP4-751D22 on chromosome Xq25-26.3,
             complete sequence
          Length = 85538

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   ctcttttcctaatcaatcaa 197
             ||||||||||||||||||||
Sbjct: 54297 ctcttttcctaatcaatcaa 54316
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>emb|AL021395.16|HS269M15 Human DNA sequence from clone RP1-269M15 on chromosome 20q12-13.12
             Contains the PPIAL gene for peptidylprolyl isomerase A
             (cyclophilin A)-like pseudogene, the 5' end of the PTPRT
             gene for protein tyrosine phosphatase receptor type T, a
             novel gene and two CpG Islands, complete sequence
          Length = 177562

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 103   ccatgataattattcacatttgca 126
             |||||||||| |||||||||||||
Sbjct: 54868 ccatgataataattcacatttgca 54891
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>emb|AL606831.17| Mouse DNA sequence from clone RP23-432M23 on chromosome 11 Contains the
              5' end of Ntn1 gene for netrin 1, three genes for a novel
              proteins (F730038I15Rik), the 3' end of a novel gene
              (4930535C22Rik) and two CpG islands, complete sequence
          Length = 221455

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    tcctaatcaatcaatcaatc 203
              ||||||||||||||||||||
Sbjct: 212251 tcctaatcaatcaatcaatc 212270
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>emb|CR749163.11| Zebrafish DNA sequence from clone CH211-216B21 in linkage group 5,
             complete sequence
          Length = 189369

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   atactaaaacaatactggat 152
             ||||||||||||||||||||
Sbjct: 68759 atactaaaacaatactggat 68740
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 487     ctgccgtcgtcgccggcgtcgcgacggc 514
               ||||||||||||||| ||| ||||||||
Sbjct: 3536417 ctgccgtcgtcgccgacgttgcgacggc 3536390
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>gb|AC003673.3| Arabidopsis thaliana chromosome 2 clone F19F24 map CIC06E08, complete
             sequence
          Length = 99359

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   tttcctaatcaatcaatcaa 201
             ||||||||||||||||||||
Sbjct: 45507 tttcctaatcaatcaatcaa 45526
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>gb|AF169823.1| Spodoptera exigua nucleopolyhedrovirus complete genome
          Length = 135611

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 258   gtcgtgtacaatttcctcgacaac 281
             ||||||||||||||| ||||||||
Sbjct: 78558 gtcgtgtacaatttcgtcgacaac 78581
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>gb|AF344173.1| Ciona intestinalis alcohol dehydrogenase class 3 (Adh3) gene,
            complete cds
          Length = 3890

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 218  tttcttgtcctctgccagcc 237
            ||||||||||||||||||||
Sbjct: 2428 tttcttgtcctctgccagcc 2409
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>gb|AF344172.1| Ciona intestinalis alcohol dehydrogenase class 3 (Adh3) mRNA,
           complete cds
          Length = 1407

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 218 tttcttgtcctctgccagcc 237
           ||||||||||||||||||||
Sbjct: 992 tttcttgtcctctgccagcc 973
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 487     ctgccgtcgtcgccggcgtc 506
               ||||||||||||||||||||
Sbjct: 1948825 ctgccgtcgtcgccggcgtc 1948844
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>gb|AC010290.7| Homo sapiens chromosome 5 clone CTB-125B20, complete sequence
          Length = 238472

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 136  ctaaaacaatactggatgct 155
            ||||||||||||||||||||
Sbjct: 6707 ctaaaacaatactggatgct 6726
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 487     ctgccgtcgtcgccggcgtc 506
               ||||||||||||||||||||
Sbjct: 4741252 ctgccgtcgtcgccggcgtc 4741233
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>gb|AC155252.2| Mus musculus BAC clone RP24-190H19 from chromosome 14, complete sequence
          Length = 152012

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 132    aatactaaaacaatactgga 151
              ||||||||||||||||||||
Sbjct: 137920 aatactaaaacaatactgga 137939
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>gb|AC009469.4| Homo sapiens BAC clone RP11-20N16 from 2, complete sequence
          Length = 168448

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    tcctctgccagccccatctg 244
              ||||||||||||||||||||
Sbjct: 133506 tcctctgccagccccatctg 133487
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>emb|BX321894.8| Zebrafish DNA sequence from clone DKEYP-56B7 in linkage group 19,
             complete sequence
          Length = 181789

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 180   cttttcctaatcaatcaatcaatc 203
             |||||| |||||||||||||||||
Sbjct: 15128 cttttcttaatcaatcaatcaatc 15151
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>gb|AC154843.2| Mus musculus BAC clone RP23-58N15 from chromosome 14, complete sequence
          Length = 199716

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   aatactaaaacaatactgga 151
             ||||||||||||||||||||
Sbjct: 10547 aatactaaaacaatactgga 10566
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>dbj|AP004692.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0455A11
          Length = 158629

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 487   ctgccgtcgtcgccggcgtc 506
             ||||||||||||||||||||
Sbjct: 99268 ctgccgtcgtcgccggcgtc 99249
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 489     gccgtcgtcgccggcgtcgc 508
               ||||||||||||||||||||
Sbjct: 2983137 gccgtcgtcgccggcgtcgc 2983156
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>emb|CR391974.8| Zebrafish DNA sequence from clone CH211-59E10 in linkage group 19,
             complete sequence
          Length = 179116

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 180   cttttcctaatcaatcaatcaatc 203
             ||||||| ||||||||||||||||
Sbjct: 89955 cttttccaaatcaatcaatcaatc 89978
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>gb|AC016968.24| Homo sapiens 3 BAC RP11-59J16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152586

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    tcctctgccagccccatctg 244
              ||||||||||||||||||||
Sbjct: 129010 tcctctgccagccccatctg 129029
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>gb|AC137950.16| Mus musculus chromosome 15, clone RP24-356L7, complete sequence
          Length = 182058

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    tcctaatcaatcaatcaatc 203
              ||||||||||||||||||||
Sbjct: 138815 tcctaatcaatcaatcaatc 138834
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>gb|AC004169.3|AC004169 Homo sapiens chromosome 4 clone C0236G06 map 4p16, complete sequence
          Length = 189805

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  aatcaatcaatcaatcgcta 207
            ||||||||||||||||||||
Sbjct: 7916 aatcaatcaatcaatcgcta 7897
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>dbj|AP003327.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-507F16, complete
              sequence
          Length = 188040

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    ctaaaacaatactggatgct 155
              ||||||||||||||||||||
Sbjct: 115388 ctaaaacaatactggatgct 115407
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>gb|AC120156.9| Mus musculus chromosome 18, clone RP24-263P17, complete sequence
          Length = 153019

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 326   gatggtcgacaccggggtga 345
             ||||||||||||||||||||
Sbjct: 53157 gatggtcgacaccggggtga 53138
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>emb|AJ629123.1| Streptomyces sp. DSM 40477 genomic region of the apramycin biosynthesis
             cluster
          Length = 41623

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 497   cgccggcgtcgcgacggcgc 516
             ||||||||||||||||||||
Sbjct: 16011 cgccggcgtcgcgacggcgc 16030


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,744,486
Number of Sequences: 3902068
Number of extensions: 3744486
Number of successful extensions: 154288
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 153538
Number of HSP's gapped (non-prelim): 749
length of query: 516
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 493
effective length of database: 17,143,297,704
effective search space: 8451645768072
effective search space used: 8451645768072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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