ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart13e10 |
|---|---|
| Clone Library Name | barley_pub |
>PSD8_DICDI (P02889) Probable 26S proteasome non-ATPase regulatory subunit 8| (Vegetative cell protein X) (M4 protein) Length = 263 Score = 82.0 bits (201), Expect = 8e-16 Identities = 43/107 (40%), Positives = 69/107 (64%) Frame = -1 Query: 499 LSARQTAPHETYVYFMDLLAKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELRQYIA 320 + +R P E Y F+D+LA +++++IA CSEK + LS+ DA+++ +F+ + + +QYI Sbjct: 161 IQSRSGVPSEYYQVFLDILADSIKEDIANCSEKSFKTLSLKDAEKVLLFNDNNQFQQYIK 220 Query: 319 EEHPEWDVKDGSVLFQKAKESQPCKEIPAAPVINQTLGYARELERIV 179 E + W V+ G V+ Q EIP+ +I+QTL YA+ELERIV Sbjct: 221 ERN--WKVQ-GDVI-QFGNNDNQTVEIPSLQLIHQTLHYAKELERIV 263
>PSD8_MOUSE (Q9CX56) 26S proteasome non-ATPase regulatory subunit 8 (26S| proteasome regulatory subunit S14) Length = 257 Score = 66.6 bits (161), Expect = 3e-11 Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 1/106 (0%) Frame = -1 Query: 493 ARQTAPHETYVYFMDLLAKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELRQYIAEE 314 A+ P E+Y +F+D+L T+RDEIAGC EK Y+ + ++A ++ FS+ K++ Y + Sbjct: 154 AKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFAEATRILFFSTPKKMTDYAKKR 213 Query: 313 HPEWDVKDGSVLFQKAKESQP-CKEIPAAPVINQTLGYARELERIV 179 W + + +++ +P IP + Q + YAR+LE IV Sbjct: 214 --GWVLGPNNYYSFASQQQKPEDSTIPFTELAKQVIEYARQLEMIV 257
>PSD8_PONPY (Q5RE15) 26S proteasome non-ATPase regulatory subunit 8| Length = 257 Score = 66.2 bits (160), Expect = 4e-11 Identities = 34/106 (32%), Positives = 61/106 (57%), Gaps = 1/106 (0%) Frame = -1 Query: 493 ARQTAPHETYVYFMDLLAKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELRQYIAEE 314 A+ P E+Y +F+D+L T+RDEIAGC EK Y+ + ++A ++ F++ K++ Y + Sbjct: 154 AKGNIPAESYAFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKR 213 Query: 313 HPEWDVKDGSVLFQKAKESQP-CKEIPAAPVINQTLGYARELERIV 179 W + + +++ +P IP+ + Q + YAR+LE IV Sbjct: 214 --GWVLGPNNYYSFASQQQKPEDTTIPSTELAKQVIEYARQLEMIV 257
>PSD8_HUMAN (P48556) 26S proteasome non-ATPase regulatory subunit 8 (26S| proteasome regulatory subunit S14) (p31) Length = 257 Score = 66.2 bits (160), Expect = 4e-11 Identities = 34/106 (32%), Positives = 61/106 (57%), Gaps = 1/106 (0%) Frame = -1 Query: 493 ARQTAPHETYVYFMDLLAKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELRQYIAEE 314 A+ P E+Y +F+D+L T+RDEIAGC EK Y+ + ++A ++ F++ K++ Y + Sbjct: 154 AKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKR 213 Query: 313 HPEWDVKDGSVLFQKAKESQP-CKEIPAAPVINQTLGYARELERIV 179 W + + +++ +P IP+ + Q + YAR+LE IV Sbjct: 214 --GWVLGPNNYYSFASQQQKPEDTTIPSTELAKQVIEYARQLEMIV 257
>RPN12_SCHPO (P50524) 26S proteasome regulatory subunit rpn12| Length = 270 Score = 53.5 bits (127), Expect = 3e-07 Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 17/113 (15%) Frame = -1 Query: 466 YVYFMDLLAKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELRQYIAEEHPEWDVKDG 287 + YFM ++ VR+EIA C+EK Y + +S+A + + KE + +AEE WD++DG Sbjct: 160 FSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEK-LAEER-GWDIRDG 217 Query: 286 SVLFQKAK-----------------ESQPCKEIPAAPVINQTLGYARELERIV 179 + F K E P I Q L Y ELE+IV Sbjct: 218 VIYFPKEANALETEDGMLIDEEDELELPPTASKHTISSIRQLLSYTSELEQIV 270
>PSD8_CAEEL (Q23449) 26S proteasome non-ATPase regulatory subunit 8 (26S| proteasome regulatory subunit rpn-12) Length = 250 Score = 52.8 bits (125), Expect = 5e-07 Identities = 29/100 (29%), Positives = 52/100 (52%) Frame = -1 Query: 478 PHETYVYFMDLLAKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELRQYIAEEHPEWD 299 P Y F+ ++ T+R EIA EK + L+ DA M +F +D++++++ E +W Sbjct: 153 PSPFYTIFIRIMLDTIRREIATSIEKSFKVLTAKDATVMLLFDNDEQMKKFGQER--KWH 210 Query: 298 VKDGSVLFQKAKESQPCKEIPAAPVINQTLGYARELERIV 179 + +F+ + + V QTL YA++LE+IV Sbjct: 211 LDGERYVFEIEVAQEKPVNLDTVRVATQTLFYAKQLEQIV 250
>RPN12_YEAST (P32496) 26S proteasome regulatory subunit RPN12 (Nuclear integrity| protein 1) Length = 274 Score = 50.4 bits (119), Expect = 3e-06 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 7/100 (7%) Frame = -1 Query: 457 FMDLLAKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELRQYIAEEHPEWDVKDGSVL 278 F D+L +RDEIA +E YD+L +S+ K + F+++KE ++ E + W + + V Sbjct: 177 FTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERN--WPIVNSKVY 234 Query: 277 F-----QKA--KESQPCKEIPAAPVINQTLGYARELERIV 179 F +KA ++ +E +I + + YA +E IV Sbjct: 235 FNNQSKEKADYEDEMMHEEDQKTNIIEKAMDYAISIENIV 274
>BLS_STRCL (Q9R8E3) Carboxyethyl-arginine beta-lactam-synthase (EC 6.3.3.4)| (Beta-lactam synthetase) Length = 513 Score = 32.3 bits (72), Expect = 0.72 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = -3 Query: 356 VQLRQGTAAVHRRGTPRVGCQGRQRLVPEGEGVAALQ 246 + L GTA HR TP + +R++PEGE VAA++ Sbjct: 195 IDLGSGTAVTHRTWTPGLS----RRILPEGEAVAAVR 227
>POP1_CAEEL (Q10666) Protein pop-1 (Posterior pharynx defect protein 1)| Length = 438 Score = 31.6 bits (70), Expect = 1.2 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 9/91 (9%) Frame = -1 Query: 478 PHETYVYFMDLLAKTVRDEIAGCSEK---------GYDYLSISDAKQMFMFSSDKELRQY 326 P +V+FM K + +EI G +EK G + +S +Q F K+ ++ Sbjct: 195 PLNAFVWFMKENRKALLEEI-GNNEKQSAELNKELGKRWHDLSKEEQAKYFEMAKKDKET 253 Query: 325 IAEEHPEWDVKDGSVLFQKAKESQPCKEIPA 233 E +PEW ++ + +K + + K IP+ Sbjct: 254 HKERYPEWSARENYAVNKKKTKKRRDKSIPS 284
>FTHS_RHILO (Q98HQ4) Formate--tetrahydrofolate ligase (EC 6.3.4.3)| (Formyltetrahydrofolate synthetase) (FHS) (FTHFS) Length = 559 Score = 31.2 bits (69), Expect = 1.6 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -1 Query: 439 KTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELR 332 K+VRD++ + GY L + AK + FS+D LR Sbjct: 468 KSVRDQLHAWEQAGYGNLPVCMAKTQYSFSTDPNLR 503
>MK14A_CYPCA (Q90336) Mitogen-activated protein kinase 14a (EC 2.7.11.24)| (Mitogen-activated protein kinase p38a) (MAP kinase p38a) (cp38a) Length = 361 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = -2 Query: 126 GLLDC--PVTQLYYFGSIVCFTHCFQSAVDNTVKCQK 22 GLLD P T L F + TH + ++N VKCQK Sbjct: 86 GLLDVFTPATSLEEFNDVYLVTHLMGADLNNIVKCQK 122
>MK14A_BRARE (Q9DGE2) Mitogen-activated protein kinase 14a (EC 2.7.11.24)| (Mitogen-activated protein kinase p38a) (MAP kinase p38a) (zp38a) Length = 361 Score = 30.8 bits (68), Expect = 2.1 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = -2 Query: 126 GLLDC--PVTQLYYFGSIVCFTHCFQSAVDNTVKCQK 22 GLLD P T L F + TH + ++N VKCQK Sbjct: 86 GLLDVFTPATSLKEFNDVYLVTHLMGADLNNIVKCQK 122
>MK14B_BRARE (Q9DGE1) Mitogen-activated protein kinase 14b (EC 2.7.11.24)| (Mitogen-activated protein kinase p38b) (MAP kinase p38b) (zp38b) Length = 348 Score = 30.4 bits (67), Expect = 2.7 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = -2 Query: 126 GLLDC--PVTQLYYFGSIVCFTHCFQSAVDNTVKCQK 22 GLLD P T L F + TH + ++N VKCQK Sbjct: 86 GLLDVFSPATSLEGFNDVYLVTHLMGADLNNIVKCQK 122
>MK14B_CYPCA (Q9I958) Mitogen-activated protein kinase 14b (EC 2.7.11.24)| (Mitogen-activated protein kinase p38b) (MAP kinase p38b) (cp38b) Length = 361 Score = 29.6 bits (65), Expect = 4.7 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = -2 Query: 126 GLLDC--PVTQLYYFGSIVCFTHCFQSAVDNTVKCQK 22 GLLD P T L F + TH + ++N VKCQK Sbjct: 86 GLLDAFSPATCLAGFNDVYLVTHLMGADLNNIVKCQK 122
>Y787_SYNY3 (Q55946) Hypothetical protein sll0787| Length = 322 Score = 29.3 bits (64), Expect = 6.1 Identities = 11/36 (30%), Positives = 22/36 (61%) Frame = -3 Query: 365 DVYVQLRQGTAAVHRRGTPRVGCQGRQRLVPEGEGV 258 D+ ++L+Q +H++ QG+QRL+ +GE + Sbjct: 4 DLIIELQQTLGILHKQDIQLASRQGQQRLIGDGEAI 39
>Y948_NEIMA (Q9JV90) UPF0042 protein NMA0948| Length = 284 Score = 28.9 bits (63), Expect = 7.9 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 6/50 (12%) Frame = -1 Query: 400 GYDYLSISDAKQMFMFSS------DKELRQYIAEEHPEWDVKDGSVLFQK 269 G+ Y ++A MF S D ELR Y + P WD DG L Q+ Sbjct: 168 GFKYGVPNNADFMFDMRSLPNPYYDPELRPYTGMDKPVWDYLDGQPLVQE 217
>Y738_NEIMB (Q9K080) UPF0042 protein NMB0738| Length = 284 Score = 28.9 bits (63), Expect = 7.9 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 6/50 (12%) Frame = -1 Query: 400 GYDYLSISDAKQMFMFSS------DKELRQYIAEEHPEWDVKDGSVLFQK 269 G+ Y ++A MF S D ELR Y + P WD DG L Q+ Sbjct: 168 GFKYGVPNNADFMFDMRSLPNPYYDPELRPYTGMDKPVWDYLDGQPLVQE 217
>CSK22_MOUSE (O54833) Casein kinase II subunit alpha' (EC 2.7.11.1) (CK II)| Length = 350 Score = 28.9 bits (63), Expect = 7.9 Identities = 12/43 (27%), Positives = 26/43 (60%) Frame = -1 Query: 445 LAKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELRQYIAE 317 L TV+D ++ ++Y++ +D KQ++ +D ++R Y+ E Sbjct: 98 LIDTVKDPVSKTPALVFEYINNTDFKQLYQILTDFDIRFYMYE 140
>CSK22_HUMAN (P19784) Casein kinase II subunit alpha' (EC 2.7.11.1) (CK II)| Length = 350 Score = 28.9 bits (63), Expect = 7.9 Identities = 12/43 (27%), Positives = 26/43 (60%) Frame = -1 Query: 445 LAKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELRQYIAE 317 L TV+D ++ ++Y++ +D KQ++ +D ++R Y+ E Sbjct: 98 LIDTVKDPVSKTPALVFEYINNTDFKQLYQILTDFDIRFYMYE 140
>CSK22_CHICK (P21869) Casein kinase II subunit alpha' (EC 2.7.11.1) (CK II)| Length = 350 Score = 28.9 bits (63), Expect = 7.9 Identities = 12/43 (27%), Positives = 26/43 (60%) Frame = -1 Query: 445 LAKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELRQYIAE 317 L TV+D ++ ++Y++ +D KQ++ +D ++R Y+ E Sbjct: 98 LIDTVKDPVSKTPALVFEYINNTDFKQLYQILTDFDIRFYMYE 140
>CSK22_BOVIN (P20427) Casein kinase II subunit alpha' (EC 2.7.11.1) (CK II)| Length = 350 Score = 28.9 bits (63), Expect = 7.9 Identities = 12/43 (27%), Positives = 26/43 (60%) Frame = -1 Query: 445 LAKTVRDEIAGCSEKGYDYLSISDAKQMFMFSSDKELRQYIAE 317 L TV+D ++ ++Y++ +D KQ++ +D ++R Y+ E Sbjct: 98 LIDTVKDPVSKTPALVFEYINNTDFKQLYQILTDFDIRFYMYE 140
>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)| Length = 3530 Score = 28.9 bits (63), Expect = 7.9 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Frame = +1 Query: 190 PIPSRSQGSG**RAPPVSPCRAATP---SPSGTRRCRP 294 P+P R SG APP+SP + P SP G+ R P Sbjct: 664 PVPPRPPSSGPPPAPPLSPALSGLPRPASPYGSLRRHP 701 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,359,494 Number of Sequences: 219361 Number of extensions: 1623579 Number of successful extensions: 5041 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4862 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5030 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
