ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart13e06 |
|---|---|
| Clone Library Name | barley_pub |
>CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor (Root-specific| protein ZRP3) Length = 129 Score = 57.8 bits (138), Expect = 1e-08 Identities = 30/72 (41%), Positives = 39/72 (54%) Frame = -3 Query: 461 CGNVLNLLKLKIGVPANEQXXXXXXXXXXXXXXXXXXXAIRANILGIKLNVPIDLTLLLN 282 C VL L+K +G+P EQ AI+AN+LGI LNVP+ L +LN Sbjct: 58 CAKVLGLVK--VGLPQYEQCCPLLEGLVDLDAALCLCTAIKANVLGIHLNVPLSLNFILN 115 Query: 281 QCGKKCPANFTC 246 CG+ CP +FTC Sbjct: 116 NCGRICPEDFTC 127
>14KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor| Length = 137 Score = 48.1 bits (113), Expect = 1e-05 Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = -3 Query: 461 CGNVLNLL-KLKIGVPANEQXXXXXXXXXXXXXXXXXXXAIRANILGIKLNVPIDLTLLL 285 C +VLNL+ + IG P AI+ANILG LN+PI L+L+L Sbjct: 64 CADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGKNLNLPIALSLVL 123 Query: 284 NQCGKKCPANFTC 246 N CGK+ P F C Sbjct: 124 NNCGKQVPNGFEC 136
>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein| Length = 346 Score = 33.1 bits (74), Expect = 0.36 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = -3 Query: 344 IRANILGIKLNVPIDLTLLLNQCGKKCPANFTC 246 IR +L I + +PI L +L++ CGK P +F C Sbjct: 311 IRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343
>HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly m 1)| Length = 80 Score = 32.3 bits (72), Expect = 0.61 Identities = 16/33 (48%), Positives = 22/33 (66%) Frame = -3 Query: 344 IRANILGIKLNVPIDLTLLLNQCGKKCPANFTC 246 I+ LGI LN+ +L L+LN CG+ P+N TC Sbjct: 46 IQLRALGI-LNLNRNLQLILNSCGRSYPSNATC 77
>Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71)| Length = 875 Score = 31.6 bits (70), Expect = 1.0 Identities = 18/39 (46%), Positives = 21/39 (53%) Frame = -2 Query: 336 QHPRHQAQCPHRPHPPTQPVRQEVPRQLHLPHVIHLSID 220 Q P+ Q Q P P P QP Q P+QL L I LS+D Sbjct: 123 QPPQQQPQPPQPPQQPPQPP-QPPPQQLALVQQIELSVD 160
>HMEN_ANOGA (O02491) Segmentation polarity homeobox protein engrailed| Length = 596 Score = 30.8 bits (68), Expect = 1.8 Identities = 18/41 (43%), Positives = 19/41 (46%) Frame = -2 Query: 345 HQGQHPRHQAQCPHRPHPPTQPVRQEVPRQLHLPHVIHLSI 223 H QHP H Q PH PH P +Q P Q P I SI Sbjct: 93 HHHQHPHHH-QLPHHPHHQHHPQQQPSP-QTSPPASISFSI 131
>Y4UE_RHISN (Q53198) Putative transposase y4uE| Length = 359 Score = 30.4 bits (67), Expect = 2.3 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = -2 Query: 336 QHPRHQAQCPHRPHPPTQPVRQ 271 Q PRH A C PHPP QP Q Sbjct: 314 QRPRHYAHC---PHPPRQPAAQ 332
>YG49_SCHPO (O60184) Protein C23E6.09 in chromosome II| Length = 1102 Score = 30.4 bits (67), Expect = 2.3 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = -2 Query: 342 QGQHPRHQAQCPHRPHPPTQPV-RQEVPRQLH 250 Q Q + Q Q P +P PP QP+ +Q+ RQLH Sbjct: 175 QQQPQQQQHQQPQQPQPPQQPLQQQQQQRQLH 206
>OR2T3_HUMAN (Q8NH03) Olfactory receptor 2T3| Length = 318 Score = 30.0 bits (66), Expect = 3.0 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Frame = -2 Query: 216 LVAIACHTRALLQFICQAFAWAPSLMHACFISL*L--INVIVSRYGI*MHDLH 64 +++ C T ALL+ C + +LM+ C I + L I VI S Y + +H +H Sbjct: 179 ILSFFCETPALLKLSCSDVSLYKTLMYLCCILMLLAPIMVISSSYTLILHLIH 231
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 29.6 bits (65), Expect = 3.9 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = -2 Query: 333 HPRHQAQCPHRPHPPTQPVRQEVPRQLHLP 244 HP Q Q +P PP P Q P+Q H P Sbjct: 963 HPSVQQQLQQQPPPPPPPQPQPPPQQQHQP 992
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 29.3 bits (64), Expect = 5.1 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 8/46 (17%) Frame = -2 Query: 345 HQGQHPRHQAQCPHRPHP-PTQPVRQEVP-------RQLHLPHVIH 232 H HP+ PHRPH P P R + P QL PH H Sbjct: 373 HPQMHPQPSPHTPHRPHGLPQHPQRPQHPAPHPQQHSQLQPPHSQH 418
>ZIPA_ECOLI (P77173) Cell division protein zipA| Length = 328 Score = 29.3 bits (64), Expect = 5.1 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 4/34 (11%) Frame = -2 Query: 330 PRHQAQCPHRPHPPTQPVRQ----EVPRQLHLPH 241 P+HQ Q P+ P QPV+Q +VP Q H PH Sbjct: 88 PQHQYQPPYASAQPRQPVQQPPEAQVPPQ-HAPH 120
>FOXJ3_HUMAN (Q9UPW0) Forkhead box protein J3| Length = 622 Score = 28.5 bits (62), Expect = 8.7 Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 8/48 (16%) Frame = -2 Query: 345 HQGQHPRHQAQCPHRPHP-PTQPVRQEVP-------RQLHLPHVIHLS 226 H HP+ PHRPH P P R P QL PH H S Sbjct: 372 HPQMHPQPSPHPPHRPHGLPQHPQRSPHPAPHPQQHSQLQSPHPQHPS 419
>HOG3_HORVU (P80198) Gamma-hordein-3| Length = 289 Score = 28.5 bits (62), Expect = 8.7 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Frame = -2 Query: 336 QHPRHQAQCPHRPHPPTQPV--RQEVPRQLHLPH 241 Q P Q P +P+P QP+ +Q P+Q LPH Sbjct: 30 QQPPFLQQEPEQPYPQQQPLPQQQPFPQQPQLPH 63
>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic| chromosome-associated protein) (MCAP) Length = 1400 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = -2 Query: 342 QGQHPRHQAQCPHRPHPPTQPVRQEVPRQLHLP 244 Q P+ P +P PP Q Q PR +HLP Sbjct: 971 QQLQPQPPPPPPPQPQPPPQQQHQPPPRPVHLP 1003 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,188,245 Number of Sequences: 219361 Number of extensions: 973747 Number of successful extensions: 2534 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2348 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2508 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
