>HIW_DROME (Q9NB71) Ubiquitin ligase protein highwire (EC 6.3.2.-) (Protein|
            pam/highwire/rpm-1)
          Length = 5233

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 203  CNIAFHSTLHIHPQLACNRYHSG--KHEGKTGTGRTTVIPGIKTKKHLPHSLTGPH 364
            C+++F+ T     QL C  Y+S   K +G + +GRT     + T       L GPH
Sbjct: 2148 CDLSFNGTTPARGQLPCILYYSTPMKQDGHSASGRTGDGSNVATHLEDRIMLLGPH 2203

>MLO2_SCHPO (Q09329) Protein mlo2|
          Length = 329

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -3

Query: 251 RLAVDECGV*NEMQCYSFRNCCASSV*YSEKTHE---LSCIMC*DMYSPHCHCLQQ 93
           R +VDECG  N+         C     Y+ +T E     CI+C D +  H  CLQ+
Sbjct: 102 RKSVDECGSENDYNHNFEGRFCICDTVYNPETEEGTMFQCILCEDWF--HEKCLQK 155

>CF170_HUMAN (Q96NH3) Protein C6orf170|
          Length = 1247

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
 Frame = -1

Query: 229 ECRMKC--NVTVSETVVHPVCSTLKKHMSLVV*CAETCILHIATVCSNV 89
           EC ++C  N  V ET++ P+ + +K + +    C+ET ++HIA + + +
Sbjct: 499 ECAVECLYNNIVIETLLQPIHNLMKGNEASPN-CSETALIHIAGILARI 546

>DHX15_SCHPO (O42945) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase prp43 (EC 3.6.1.-)
          Length = 735

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 281 GKTGTGRTTVIPGIKTKKHLPHSLTGPHVENLPPR 385
           G+TG+G+TT IP       LPH LT   +    PR
Sbjct: 98  GETGSGKTTQIPQFVLYDELPH-LTNTQIACTQPR 131

>TMBI4_HUMAN (Q9HC24) Transmembrane BAX inhibitor motif-containing protein 4|
           (Z-protein) (S1R protein)
          Length = 238

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 102 TVAMWRIHVSAHYTTKLMCFFRVLHTGCTTVSETVTLHFILHSTFIHS*PAI 257
           +VA   +H+   +  K+      L    TTV+ TV L+F    TF+H  PA+
Sbjct: 22  SVASATVHIRMAFLRKVYSILS-LQVLLTTVTSTVFLYFESVRTFVHESPAL 72

>BIN1_MOUSE (O08539) Myc box-dependent-interacting protein 1 (Bridging|
           integrator 1) (Amphiphysin-like protein) (Amphiphysin
           II) (SH3-domain-containing protein 9)
          Length = 588

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 266 SGKHEGKTGTGRTTVIPGIKTKKHLPHSLTGPHVENL 376
           +G  EG  GTGR  + PG   K    H  T    + L
Sbjct: 498 NGAVEGSAGTGRLDLPPGFMFKVQAQHDYTATDTDEL 534

>PE38_NPVAC (P23801) Major immediate early protein (PE-38)|
          Length = 321

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 27  FLYTLGLIHGSVNCMHNAVCCTLLQT-VAMWR 119
           F   + L   ++N  H+ VCC L  T V MWR
Sbjct: 115 FKCVINLQSNAMNIPHSTVCCPLCNTQVKMWR 146

>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor|
          Length = 866

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +2

Query: 218 HSTLHIHPQLACNRYHSGKHEGKTGTGRTTVIPGIKTKKHLPHSLTGPHVENLPPRPRTT 397
           H+T++ H      + H+G H G+ G  R +   G         S T PH + L P P  T
Sbjct: 550 HTTINDHTTANAQK-HAGHHRGRAGGRRGSPQGG---------SHTTPHPDRLTPSPDDT 599

>VGLX_EHV1B (P28968) Glycoprotein X precursor|
          Length = 797

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +2

Query: 218 HSTLHIHPQLACNRYHSGKHEGKTGTGRTTVIPGIKTKKHLPHSLTGPHVENLPPRPRTT 397
           H+T++ H      + H+G H G+ G  R +   G         S T PH + L P P  T
Sbjct: 481 HTTINDHTTANAQK-HAGHHRGRAGGRRGSPQGG---------SHTTPHPDRLTPSPDDT 530


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,446,276
Number of Sequences: 219361
Number of extensions: 1296515
Number of successful extensions: 3225
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3221
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)