>emb|AL354711.24| Human DNA sequence from clone RP11-340N12 on chromosome 9 Contains the
             3' end of a novel gene (FLJ25636) and the 5' end of a
             novel gene (FLJ20276), complete sequence
          Length = 162126

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 261   atcactcagggaaacatgagggaaaa 286
             ||||||||||||||| ||||||||||
Sbjct: 26556 atcactcagggaaacctgagggaaaa 26581

>gb|AC069547.7| Homo sapiens chromosome 10 clone RP11-521C22, complete sequence
          Length = 189144

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 218   cattctacactccacattcatc 239
             ||||||||||||||||||||||
Sbjct: 22240 cattctacactccacattcatc 22261

>ref|XM_607597.2| PREDICTED: Bos taurus similar to Zinc finger protein 215 (BWSCR2
            associated zinc-finger protein 2) (BAZ 2) (LOC529157),
            mRNA
          Length = 1494

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 331  gaagcatcttccacattcact 351
            |||||||||||||||||||||
Sbjct: 1197 gaagcatcttccacattcact 1177

>gb|AC011306.9| Homo sapiens BAC clone RP11-479N15 from 2, complete sequence
          Length = 170101

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 200   aactgtaacattgcatttcat 220
             |||||||||||||||||||||
Sbjct: 67676 aactgtaacattgcatttcat 67696

>dbj|AP003430.1| Hepatitis E virus genomic RNA, complete genome, isolate:JRA1
          Length = 7230

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 312  tcccaggcatcaaaactaaga 332
            |||||||||||||||||||||
Sbjct: 2764 tcccaggcatcaaaactaaga 2744

>ref|XM_531621.1| PREDICTED: Pan troglodytes LOC474139 (LOC474139), mRNA
          Length = 861

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 348 cactcacaggtccacacgtc 367
           ||||||||||||||||||||
Sbjct: 635 cactcacaggtccacacgtc 616

>gb|AC124980.7| Mus musculus chromosome 13, clone RP24-133J11, complete sequence
          Length = 215331

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 187  caacagtttctgaaactgta 206
            ||||||||||||||||||||
Sbjct: 7279 caacagtttctgaaactgta 7298

>gb|AC124691.4| Mus musculus BAC clone RP24-158O8 from chromosome 15, complete sequence
          Length = 176829

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    ctcagggaaacatgagggaa 284
              ||||||||||||||||||||
Sbjct: 120832 ctcagggaaacatgagggaa 120813

>emb|AL365181.24| Human DNA sequence from clone RP11-284F21 on chromosome 1 Contains the
             5' end of the MEF2D gene for MADS box transcription
             enhancer factor 2 polypeptide D (myocyte enhancer factor
             2D), the IQGAP3 gene for IQ motif containing GTPase
             activating protein 3, a novel gene, the APOA1BP gene for
             apolipoprotein A-I binding protein, a novel gene
             (FLJ20249), a novel gene, the gene for brain link
             protein-1 (BRAL1), a novel gene, the 5' end of the BCAN
             gene for brevican, the 3' end of a novel gene and three
             CpG islands, complete sequence
          Length = 164512

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   ggcaatgtggagaatacatg 126
             ||||||||||||||||||||
Sbjct: 73438 ggcaatgtggagaatacatg 73419

>emb|AL080274.21|HS1012F16 Human DNA sequence from clone RP5-1012F16 on chromosome 20 Contains a
             novel gene, ESTs, STSs and GSSs, complete sequence
          Length = 74539

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   atgagggaaaaacaggcact 295
             ||||||||||||||||||||
Sbjct: 26820 atgagggaaaaacaggcact 26801

>dbj|AB220979.1| Hepatitis E virus genomic RNA, complete genome, genotype 4,
            isolate:HE-JA41
          Length = 7265

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  tcccaggcatcaaaactaag 331
            ||||||||||||||||||||
Sbjct: 2775 tcccaggcatcaaaactaag 2756

>dbj|AB220977.1| Hepatitis E virus genomic RNA, complete genome, genotype 4,
            isolate:HE-JA36
          Length = 7266

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  tcccaggcatcaaaactaag 331
            ||||||||||||||||||||
Sbjct: 2775 tcccaggcatcaaaactaag 2756

>dbj|AB220976.1| Hepatitis E virus genomic RNA, complete genome, genotype 4,
            isolate:HE-JA28
          Length = 7266

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  tcccaggcatcaaaactaag 331
            ||||||||||||||||||||
Sbjct: 2775 tcccaggcatcaaaactaag 2756

>dbj|AB220975.1| Hepatitis E virus genomic RNA, complete genome, genotype 4,
            isolate:HE-JA19
          Length = 7262

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  tcccaggcatcaaaactaag 331
            ||||||||||||||||||||
Sbjct: 2775 tcccaggcatcaaaactaag 2756

>dbj|AB220973.1| Hepatitis E virus genomic RNA, complete genome, genotype 4,
            isolate:HE-JF5
          Length = 7270

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  tcccaggcatcaaaactaag 331
            ||||||||||||||||||||
Sbjct: 2775 tcccaggcatcaaaactaag 2756

>dbj|AB220972.1| Hepatitis E virus genomic RNA, complete genome, genotype 4,
            isolate:HE-JF4
          Length = 7271

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  tcccaggcatcaaaactaag 331
            ||||||||||||||||||||
Sbjct: 2775 tcccaggcatcaaaactaag 2756

>dbj|AB246676.1| Hepatitis E virus genomic RNA, complete genome, isolate:HEVN1
          Length = 7231

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  tcccaggcatcaaaactaag 331
            ||||||||||||||||||||
Sbjct: 2763 tcccaggcatcaaaactaag 2744

>dbj|AB222182.1| Hepatitis E virus genomic RNA, complete genome, isolate:wbJSG1
          Length = 7240

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  tcccaggcatcaaaactaag 331
            ||||||||||||||||||||
Sbjct: 2763 tcccaggcatcaaaactaag 2744

>gb|AC024587.5| Homo sapiens chromosome 5 clone RP11-252I13, complete sequence
          Length = 178492

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 55     gtagtgttaattgtatgcacaatg 78
              |||||||||||| |||||||||||
Sbjct: 175176 gtagtgttaattatatgcacaatg 175153

>gb|AC008800.5|AC008800 Homo sapiens chromosome 5 clone CTD-2062D19, complete sequence
          Length = 85119

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 55    gtagtgttaattgtatgcacaatg 78
             |||||||||||| |||||||||||
Sbjct: 49047 gtagtgttaattatatgcacaatg 49024

>dbj|AB161719.1| Hepatitis E virus ORF1, ORF2, ORF3 genes for ORF1 protein, ORF2
            protein, ORF3 protein, complete cds, isolate:JYW-Sap02
          Length = 7202

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  tcccaggcatcaaaactaag 331
            ||||||||||||||||||||
Sbjct: 2750 tcccaggcatcaaaactaag 2731

>dbj|AB161718.1| Hepatitis E virus ORF1, ORF2, ORF3 genes for ORF1 protein, ORF2
            protein, ORF3 protein, complete cds, isolate:JTS-Sap02
          Length = 7202

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  tcccaggcatcaaaactaag 331
            ||||||||||||||||||||
Sbjct: 2750 tcccaggcatcaaaactaag 2731

>dbj|AB161717.1| Hepatitis E virus ORF1, ORF2, ORF3 genes for ORF1 protein, ORF2
            protein, ORF3 protein, complete cds, isolate:JSM-Sap95
          Length = 7202

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  tcccaggcatcaaaactaag 331
            ||||||||||||||||||||
Sbjct: 2750 tcccaggcatcaaaactaag 2731

>gb|AC008901.5|AC008901 Homo sapiens chromosome 5 clone CTD-2245E22, complete sequence
          Length = 165916

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     aatatcccactttcatttct 31
              ||||||||||||||||||||
Sbjct: 107118 aatatcccactttcatttct 107137

>gb|AC010093.8| Homo sapiens BAC clone RP11-323O5 from 2, complete sequence
          Length = 160930

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    tatcactcagggaaacatga 279
              ||||||||||||||||||||
Sbjct: 127821 tatcactcagggaaacatga 127840

>dbj|BS000240.1| Pan troglodytes chromosome 22 clone:RP43-055A16, map 22, complete
              sequences
          Length = 185079

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 348    cactcacaggtccacacgtc 367
              ||||||||||||||||||||
Sbjct: 177093 cactcacaggtccacacgtc 177112

>gb|AF224262.1|AF224262 Heterodontus francisci HoxA10 (HoxA10), HoxA9 (HoxA9), HoxA7 (HoxA7),
             HoxA6 (HoxA6), HoxA5 (HoxA5), HoxA4 (HoxA4), HoxA3
             (HoxA3), HoxA2 (HoxA2), and HoxA1 (HoxA1) genes, complete
             cds
          Length = 81196

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 324   aaactaagaagcatcttccacatt 347
             |||||||| |||||||||||||||
Sbjct: 35691 aaactaaggagcatcttccacatt 35668

>gb|AC002476.1|AC002476 Human PAC clone RP1-318C15 from Xq23, complete sequence
          Length = 147102

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    aatatcccactttcatttct 31
             ||||||||||||||||||||
Sbjct: 90844 aatatcccactttcatttct 90825

>dbj|AP001759.1| Homo sapiens genomic DNA, chromosome 21q, section 103/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   cactcacaggtccacacgtc 367
             ||||||||||||||||||||
Sbjct: 76423 cactcacaggtccacacgtc 76442

>gb|AC174459.2| Mus musculus BAC clone RP23-358J23 from chromosome 13, complete
             sequence
          Length = 229410

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   caacagtttctgaaactgta 206
             ||||||||||||||||||||
Sbjct: 57392 caacagtttctgaaactgta 57373

>dbj|AB074917.3| Hepatitis E virus genomic RNA, nearly complete genome,
            isolate:JKK-Sap
          Length = 7235

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  tcccaggcatcaaaactaag 331
            ||||||||||||||||||||
Sbjct: 2759 tcccaggcatcaaaactaag 2740

>gb|AC154390.1| Mus musculus BAC clone RP23-10G24 from 13, complete sequence
          Length = 190233

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    caacagtttctgaaactgta 206
              ||||||||||||||||||||
Sbjct: 115329 caacagtttctgaaactgta 115348

>dbj|AP001476.1| Homo sapiens genomic DNA, chromosome 21q22.3, clone:f25H12, telomere
             region, complete sequence
          Length = 32025

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   cactcacaggtccacacgtc 367
             ||||||||||||||||||||
Sbjct: 30238 cactcacaggtccacacgtc 30257


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,248,658
Number of Sequences: 3902068
Number of extensions: 4248658
Number of successful extensions: 89900
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89817
Number of HSP's gapped (non-prelim): 83
length of query: 412
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 390
effective length of database: 17,147,199,772
effective search space: 6687407911080
effective search space used: 6687407911080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)