ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart13e04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete sequence Length = 285444 Score = 125 bits (63), Expect = 1e-25 Identities = 138/163 (84%) Strand = Plus / Minus Query: 310 agcttgacgatgtcatggacgacgccggaatcctcctcgatgccggagaaaggtagcccg 369 |||||||| ||||| ||||||||||||| |||||||| ||||||| || |||||| Sbjct: 285438 agcttgacaatgtcgtggacgacgccggcctcctcctctgcatcggagaacggcagcccg 285379 Query: 370 acgaaccgggccagcttcctgacgtgctccgccgggtctcgcagcagctcctcgtaccgc 429 |||||||| ||||||| |||||| | ||| || |||| ||||||||||||||||||||| Sbjct: 285378 acgaaccgtgccagctccctgaccttctcggcggggttgcgcagcagctcctcgtaccgc 285319 Query: 430 aggaagagcacactgtccggcctcgccgtgctggcgctccagt 472 | ||| ||||| | |||||||||||||||||||||| ||||| Sbjct: 285318 aagaatagcacgccatccggcctcgccgtgctggcgcgccagt 285276
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 91.7 bits (46), Expect = 2e-15 Identities = 85/98 (86%) Strand = Plus / Minus Query: 353 cggagaaaggtagcccgacgaaccgggccagcttcctgacgtgctccgccgggtctcgca 412 ||||||| || |||||||||||||| |||| ||||| ||||| | | || ||||| |||| Sbjct: 7945680 cggagaacggcagcccgacgaaccgcgccatcttccggacgttcccggcagggtcacgca 7945621 Query: 413 gcagctcctcgtaccgcaggaagagcacactgtccggc 450 ||| |||||||||||||||||||||||| |||||||| Sbjct: 7945620 gcaactcctcgtaccgcaggaagagcacgttgtccggc 7945583 Score = 79.8 bits (40), Expect = 7e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 141 cttgtcggcgacgatctcgtccaggcgccgcgccatgtcgggcgtcatgtggttcaccca 200 |||||| |||||||| || |||| || |||||||| || |||||||||||||||||||| Sbjct: 7945892 cttgtcagcgacgatgtcatccacacggcgcgccatctccggcgtcatgtggttcaccca 7945833 Query: 201 gtcgccggccacgcccttcc 220 ||| ||| |||||||||||| Sbjct: 7945832 gtcaccgaccacgcccttcc 7945813 Score = 44.1 bits (22), Expect = 0.41 Identities = 43/50 (86%) Strand = Plus / Plus Query: 391 acgtgctccgccgggtctcgcagcagctcctcgtaccgcaggaagagcac 440 |||||| |||||||||| ||| || ||||||||||| ||||||||||| Sbjct: 24908859 acgtgccccgccgggtcccgcttcatctcctcgtacctgaggaagagcac 24908908
>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0046H10 Length = 155544 Score = 91.7 bits (46), Expect = 2e-15 Identities = 85/98 (86%) Strand = Plus / Minus Query: 353 cggagaaaggtagcccgacgaaccgggccagcttcctgacgtgctccgccgggtctcgca 412 ||||||| || |||||||||||||| |||| ||||| ||||| | | || ||||| |||| Sbjct: 53198 cggagaacggcagcccgacgaaccgcgccatcttccggacgttcccggcagggtcacgca 53139 Query: 413 gcagctcctcgtaccgcaggaagagcacactgtccggc 450 ||| |||||||||||||||||||||||| |||||||| Sbjct: 53138 gcaactcctcgtaccgcaggaagagcacgttgtccggc 53101 Score = 79.8 bits (40), Expect = 7e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 141 cttgtcggcgacgatctcgtccaggcgccgcgccatgtcgggcgtcatgtggttcaccca 200 |||||| |||||||| || |||| || |||||||| || |||||||||||||||||||| Sbjct: 53410 cttgtcagcgacgatgtcatccacacggcgcgccatctccggcgtcatgtggttcaccca 53351 Query: 201 gtcgccggccacgcccttcc 220 ||| ||| |||||||||||| Sbjct: 53350 gtcaccgaccacgcccttcc 53331
>dbj|AK070507.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054C04, full insert sequence Length = 1260 Score = 83.8 bits (42), Expect = 5e-13 Identities = 84/98 (85%) Strand = Plus / Minus Query: 353 cggagaaaggtagcccgacgaaccgggccagcttcctgacgtgctccgccgggtctcgca 412 ||||||| || |||||||||||||| |||| ||||| ||||| | | | ||||| |||| Sbjct: 881 cggagaacggcagcccgacgaaccgcgccatcttccggacgttcccggtagggtcacgca 822 Query: 413 gcagctcctcgtaccgcaggaagagcacactgtccggc 450 ||| |||||||||||||||||||||||| |||||||| Sbjct: 821 gcaactcctcgtaccgcaggaagagcacgttgtccggc 784 Score = 79.8 bits (40), Expect = 7e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 141 cttgtcggcgacgatctcgtccaggcgccgcgccatgtcgggcgtcatgtggttcaccca 200 |||||| |||||||| || |||| || |||||||| || |||||||||||||||||||| Sbjct: 1093 cttgtcagcgacgatgtcatccacacggcgcgccatctccggcgtcatgtggttcaccca 1034 Query: 201 gtcgccggccacgcccttcc 220 ||| ||| |||||||||||| Sbjct: 1033 gtcaccgaccacgcccttcc 1014
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 181 ggcgtcatgtggttcacccagtcgccggccacgcccttcctgaatagcgcgtcgcgcgg 239 |||| |||||||||| ||||||||||||| |||||||||||||| | ||||||||||| Sbjct: 24792546 ggcgacatgtggttcgcccagtcgccggcgacgcccttcctgaagaaggcgtcgcgcgg 24792488 Score = 60.0 bits (30), Expect = 7e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 365 gcccgacgaaccgggccagcttcctgacgtgctccgccgggtctcgcagcagctcctcgt 424 ||||||||||||| ||||||||||||||| || |||||||| | |||||||| |||| Sbjct: 2549747 gcccgacgaaccgagccagcttcctgacgctatcagccgggtcatgtagcagctcttcgt 2549806 Query: 425 accgcaggaa 434 ||| |||||| Sbjct: 2549807 acctcaggaa 2549816
>dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0493C06 Length = 158923 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 181 ggcgtcatgtggttcacccagtcgccggccacgcccttcctgaatagcgcgtcgcgcgg 239 |||| |||||||||| ||||||||||||| |||||||||||||| | ||||||||||| Sbjct: 26997 ggcgacatgtggttcgcccagtcgccggcgacgcccttcctgaagaaggcgtcgcgcgg 26939
>dbj|AK105239.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-B04, full insert sequence Length = 1369 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 181 ggcgtcatgtggttcacccagtcgccggccacgcccttcctgaatagcgcgtcgcgcgg 239 |||| |||||||||| ||||||||||||| |||||||||||||| | ||||||||||| Sbjct: 1019 ggcgacatgtggttcgcccagtcgccggcgacgcccttcctgaagaaggcgtcgcgcgg 961
>ref|XM_476630.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1644 Score = 60.0 bits (30), Expect = 7e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 365 gcccgacgaaccgggccagcttcctgacgtgctccgccgggtctcgcagcagctcctcgt 424 ||||||||||||| ||||||||||||||| || |||||||| | |||||||| |||| Sbjct: 811 gcccgacgaaccgagccagcttcctgacgctatcagccgggtcatgtagcagctcttcgt 752 Query: 425 accgcaggaa 434 ||| |||||| Sbjct: 751 acctcaggaa 742
>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0022E03 Length = 163032 Score = 60.0 bits (30), Expect = 7e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 365 gcccgacgaaccgggccagcttcctgacgtgctccgccgggtctcgcagcagctcctcgt 424 ||||||||||||| ||||||||||||||| || |||||||| | |||||||| |||| Sbjct: 114727 gcccgacgaaccgagccagcttcctgacgctatcagccgggtcatgtagcagctcttcgt 114786 Query: 425 accgcaggaa 434 ||| |||||| Sbjct: 114787 acctcaggaa 114796
>gb|AC136009.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0025K21, complete sequence Length = 146539 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 399 cgccgggtctcgcagcagctcctcgtaccgcaggaagag 437 |||||| || ||||||| |||||||||||| |||||||| Sbjct: 116415 cgccggctcgcgcagcatctcctcgtaccggaggaagag 116377
>gb|AC150202.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1024A10, complete sequence Length = 157609 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 399 cgccgggtctcgcagcagctcctcgtaccgcaggaagag 437 |||||| || ||||||| |||||||||||| |||||||| Sbjct: 142408 cgccggctcgcgcagcatctcctcgtaccggaggaagag 142370
>gb|AC116345.2| Homo sapiens chromosome 5 clone RP11-232L2, complete sequence Length = 161470 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 10 aattcaaaattcatttggaataa 32 ||||||||||||||||||||||| Sbjct: 49938 aattcaaaattcatttggaataa 49916
>gb|AC020942.6| Homo sapiens chromosome 5 clone CTD-2361L15, complete sequence Length = 104995 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 10 aattcaaaattcatttggaataa 32 ||||||||||||||||||||||| Sbjct: 82116 aattcaaaattcatttggaataa 82094
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 399 cgccgggtctcgcagcagctcctcgtaccgcaggaagag 437 |||||| || ||||||| |||||||||||| |||||||| Sbjct: 17387633 cgccggctcgcgcagcatctcctcgtaccggaggaagag 17387595 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aaatttgaattcaaaattca 22 |||||||||||||||||||| Sbjct: 25945899 aaatttgaattcaaaattca 25945918
>gb|AC026416.4|AC026416 Homo sapiens chromosome 5 clone CTD-2048J22, complete sequence Length = 104995 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 10 aattcaaaattcatttggaataa 32 ||||||||||||||||||||||| Sbjct: 82116 aattcaaaattcatttggaataa 82094
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 446 ccggcctcgccgtgctggcgctc 468 ||||||||||||||||||||||| Sbjct: 6107712 ccggcctcgccgtgctggcgctc 6107734
>dbj|AK061003.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H02, full insert sequence Length = 1222 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 399 cgccgggtctcgcagcagctcctcgtaccgcaggaagag 437 |||||| || ||||||| |||||||||||| |||||||| Sbjct: 859 cgccggctcgcgcagcatctcctcgtaccggaggaagag 821
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 399 cgccgggtctcgcagcagctcctcgtaccgcaggaagag 437 |||||| || ||||||| |||||||||||| |||||||| Sbjct: 17481343 cgccggctcgcgcagcatctcctcgtaccggaggaagag 17481305 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aaatttgaattcaaaattca 22 |||||||||||||||||||| Sbjct: 26264597 aaatttgaattcaaaattca 26264616
>gb|AC162788.2| Mus musculus chromosome 1, clone RP23-79C14, complete sequence Length = 136158 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 12 ttcaaaattcatttggaataat 33 |||||||||||||||||||||| Sbjct: 43471 ttcaaaattcatttggaataat 43492
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 276 ggcctccaggttcttgaggtgg 297 |||||||||||||||||||||| Sbjct: 2290645 ggcctccaggttcttgaggtgg 2290624
>dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0530H05 Length = 145952 Score = 44.1 bits (22), Expect = 0.41 Identities = 43/50 (86%) Strand = Plus / Plus Query: 391 acgtgctccgccgggtctcgcagcagctcctcgtaccgcaggaagagcac 440 |||||| |||||||||| ||| || ||||||||||| ||||||||||| Sbjct: 3414 acgtgccccgccgggtcccgcttcatctcctcgtacctgaggaagagcac 3463
>dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0072A21 Length = 158287 Score = 44.1 bits (22), Expect = 0.41 Identities = 43/50 (86%) Strand = Plus / Plus Query: 391 acgtgctccgccgggtctcgcagcagctcctcgtaccgcaggaagagcac 440 |||||| |||||||||| ||| || ||||||||||| ||||||||||| Sbjct: 119942 acgtgccccgccgggtcccgcttcatctcctcgtacctgaggaagagcac 119991
>dbj|AK109408.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-D04, full insert sequence Length = 1274 Score = 44.1 bits (22), Expect = 0.41 Identities = 43/50 (86%) Strand = Plus / Minus Query: 391 acgtgctccgccgggtctcgcagcagctcctcgtaccgcaggaagagcac 440 |||||| |||||||||| ||| || ||||||||||| ||||||||||| Sbjct: 823 acgtgccccgccgggtcccgcttcatctcctcgtacctgaggaagagcac 774
>gb|AC137593.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0043I04, complete sequence Length = 145191 Score = 42.1 bits (21), Expect = 1.6 Identities = 66/81 (81%) Strand = Plus / Minus Query: 144 gtcggcgacgatctcgtccaggcgccgcgccatgtcgggcgtcatgtggttcacccagtc 203 |||| ||||||||| |||||| | | |||||| | |||||||||||||| |||||| Sbjct: 59492 gtcgtcgacgatcttgtccagcctcgccgccatcgccggcgtcatgtggttgcgccagtc 59433 Query: 204 gccggccacgcccttcctgaa 224 |||||| || || |||||||| Sbjct: 59432 gccggcgacacctttcctgaa 59412
>gb|AF506028.1| Poncirus trifoliata citrus tristeza virus resistance gene locus, complete sequence Length = 282699 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 10 aattcaaaattcatttggaataatt 34 |||||||||||| |||||||||||| Sbjct: 27297 aattcaaaattcttttggaataatt 27273
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 cgatgtcatggacgacgccgg 337 ||||||||||||||||||||| Sbjct: 328126 cgatgtcatggacgacgccgg 328146
>gb|AC163100.4| Mus musculus chromosome 15, clone RP23-404G8, complete sequence Length = 199486 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 tcaaaattcatttggaataat 33 ||||||||||||||||||||| Sbjct: 84495 tcaaaattcatttggaataat 84475
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 tctcgtccaggcgccgcgcca 175 ||||||||||||||||||||| Sbjct: 166415 tctcgtccaggcgccgcgcca 166395
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 tctcgtccaggcgccgcgcca 175 ||||||||||||||||||||| Sbjct: 79221 tctcgtccaggcgccgcgcca 79201
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 140 gcttgtcggcgacgatctcgtccag 164 |||||||||||| |||||||||||| Sbjct: 202192 gcttgtcggcgaggatctcgtccag 202216
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 447 cggcctcgccgtgctggcgct 467 ||||||||||||||||||||| Sbjct: 2063940 cggcctcgccgtgctggcgct 2063920
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.6 Identities = 66/81 (81%) Strand = Plus / Minus Query: 144 gtcggcgacgatctcgtccaggcgccgcgccatgtcgggcgtcatgtggttcacccagtc 203 |||| ||||||||| |||||| | | |||||| | |||||||||||||| |||||| Sbjct: 21713472 gtcgtcgacgatcttgtccagcctcgccgccatcgccggcgtcatgtggttgcgccagtc 21713413 Query: 204 gccggccacgcccttcctgaa 224 |||||| || || |||||||| Sbjct: 21713412 gccggcgacacctttcctgaa 21713392
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 144 gtcggcgacgatctcgtccag 164 ||||||||||||||||||||| Sbjct: 3999960 gtcggcgacgatctcgtccag 3999940
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 agcttgtcggcgacgatctcg 159 ||||||||||||||||||||| Sbjct: 2405809 agcttgtcggcgacgatctcg 2405829
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 tcgccggccacgcccttcctg 222 ||||||||||||||||||||| Sbjct: 6058047 tcgccggccacgcccttcctg 6058027
>gb|AE010355.1| Methanopyrus kandleri AV19 section 54 of 157 of the complete genome Length = 11133 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 cggcgacgatctcgtccagg 165 |||||||||||||||||||| Sbjct: 6705 cggcgacgatctcgtccagg 6724
>gb|BC081284.1| Xenopus laevis MGC86526 protein, mRNA (cDNA clone MGC:86526 IMAGE:3397831), complete cds Length = 2779 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 gaaaatttgaattcaaaatt 20 |||||||||||||||||||| Sbjct: 1654 gaaaatttgaattcaaaatt 1635
>ref|XM_705964.1| Candida albicans SC5314 hypothetical protein (CaO19.11188), mRNA Length = 1821 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 tgaattcaaaattcatttgg 27 |||||||||||||||||||| Sbjct: 1239 tgaattcaaaattcatttgg 1258
>ref|XM_705951.1| Candida albicans SC5314 putative RNA helicase (CaO19.3704), mRNA Length = 1821 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 tgaattcaaaattcatttgg 27 |||||||||||||||||||| Sbjct: 1239 tgaattcaaaattcatttgg 1258
>ref|XM_704987.1| Candida albicans SC5314 hypothetical protein (CaO19.2632), mRNA Length = 638 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 tgaattcaaaattcatttgg 27 |||||||||||||||||||| Sbjct: 56 tgaattcaaaattcatttgg 75
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 gcggcatggagcttgtcggcgacg 153 |||||||||||| ||||||||||| Sbjct: 1594629 gcggcatggagcctgtcggcgacg 1594606
>gb|AC131111.4| Mus musculus BAC clone RP23-449N4 from chromosome 7, complete sequence Length = 179068 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 2 aaaatttgaattcaaaattcatttggaa 29 |||||||||||||||| || |||||||| Sbjct: 109028 aaaatttgaattcaaactttatttggaa 109001
>ref|XM_648934.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (65.t00020) partial mRNA Length = 1335 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 10 aattcaaaattcatttggaataat 33 ||||||||||| |||||||||||| Sbjct: 796 aattcaaaattaatttggaataat 819
>gb|AC102643.9| Mus musculus chromosome 8, clone RP23-304B22, complete sequence Length = 210037 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 aaattcatttggaataattc 35 |||||||||||||||||||| Sbjct: 135274 aaattcatttggaataattc 135293
>gb|U28732.1| Caenorhabditis elegans cosmid F45E1, complete sequence Length = 38122 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 aaaatttgaattcaaaattc 21 |||||||||||||||||||| Sbjct: 22432 aaaatttgaattcaaaattc 22451
>gb|AC142394.19| Medicago truncatula clone mth2-11d4, complete sequence Length = 111262 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaaaatttgaattcaaaatt 20 |||||||||||||||||||| Sbjct: 47789 gaaaatttgaattcaaaatt 47808
>gb|AF440781.1| Streptomyces cinnamonensis polyether antibiotic monensin biosynthesis gene cluster, partial sequence Length = 103450 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 143 tgtcggcgacgatctcgtccaggcgccgcgcc 174 ||||||| |||| |||| |||||||||||||| Sbjct: 56117 tgtcggccacgaactcgcccaggcgccgcgcc 56086
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 agagcttgacgatgtcatgg 327 |||||||||||||||||||| Sbjct: 3985606 agagcttgacgatgtcatgg 3985587
>emb|AL160169.12| Human DNA sequence from clone RP11-405C6 on chromosome 9 Contains the 3' end of the gene for a novel protein (KIAA1993), the 5' end of the RALGPS1A gene for Ral guanine nucleotide exchange factor RalGPS1A (RALGEF2, KIAA0351) and a CpG island, complete sequence Length = 124025 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 tggtatccacaaatctctcc 76 |||||||||||||||||||| Sbjct: 55299 tggtatccacaaatctctcc 55318
>gb|AY281376.1| Hypocrea jecorina strain QM6a Axe2 (axe2) mRNA, complete cds Length = 900 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 tgacgatgtcatggacgacg 333 |||||||||||||||||||| Sbjct: 396 tgacgatgtcatggacgacg 415
>gb|AC129227.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0099J16, complete sequence Length = 133198 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aaatttgaattcaaaattca 22 |||||||||||||||||||| Sbjct: 59067 aaatttgaattcaaaattca 59048
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 cgacgatctcgtccaggcgccgcg 172 |||||||||| ||||||||||||| Sbjct: 3047077 cgacgatctcttccaggcgccgcg 3047054
>gb|AC147435.22| Medicago truncatula clone mth2-19c18, complete sequence Length = 137284 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaaaatttgaattcaaaatt 20 |||||||||||||||||||| Sbjct: 38123 gaaaatttgaattcaaaatt 38142
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 ctcgtccaggcgccgcgcca 175 |||||||||||||||||||| Sbjct: 898788 ctcgtccaggcgccgcgcca 898769
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 ccggcctcgccgtgctggcg 465 |||||||||||||||||||| Sbjct: 557416 ccggcctcgccgtgctggcg 557397
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 aaatttgaattcaaaattcatttg 26 |||||||||||||||||| ||||| Sbjct: 13777336 aaatttgaattcaaaatttatttg 13777359
>dbj|AP003205.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1146B04 Length = 145186 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 aaatttgaattcaaaattcatttg 26 |||||||||||||||||| ||||| Sbjct: 115664 aaatttgaattcaaaatttatttg 115687
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 tggagcttgtcggcgacgat 155 |||||||||||||||||||| Sbjct: 1353175 tggagcttgtcggcgacgat 1353156
>dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0440D10 Length = 144340 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 aaatttgaattcaaaattcatttg 26 |||||||||||||||||| ||||| Sbjct: 14739 aaatttgaattcaaaatttatttg 14762
>emb|AL672124.13| Mouse DNA sequence from clone RP23-392H8 on chromosome X, complete sequence Length = 197404 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 aattcaaaattcatttggaa 29 |||||||||||||||||||| Sbjct: 135441 aattcaaaattcatttggaa 135460
>dbj|AB072435.1| Apis cerana indica mitochondrial co2 gene for cytochrome oxidase 2, partial cds Length = 313 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 aaatttgaattcaaaattca 22 |||||||||||||||||||| Sbjct: 45 aaatttgaattcaaaattca 26
>gb|BC083664.1| Rattus norvegicus similar to Hypothetical protein C20orf135, mRNA (cDNA clone MGC:94505 IMAGE:7135476), complete cds Length = 1925 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 gcctccaggttcttgaggtg 296 |||||||||||||||||||| Sbjct: 1602 gcctccaggttcttgaggtg 1583
>ref|NM_001014052.1| Rattus norvegicus similar to Hypothetical protein C20orf135 (RGD1309726), mRNA Length = 1925 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 gcctccaggttcttgaggtg 296 |||||||||||||||||||| Sbjct: 1602 gcctccaggttcttgaggtg 1583 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,281,632 Number of Sequences: 3902068 Number of extensions: 3281632 Number of successful extensions: 76092 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74381 Number of HSP's gapped (non-prelim): 1709 length of query: 472 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 450 effective length of database: 17,147,199,772 effective search space: 7716239897400 effective search space used: 7716239897400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
