ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart13e01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470106.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1283 Score = 210 bits (106), Expect = 3e-51 Identities = 160/178 (89%) Strand = Plus / Minus Query: 112 gtccaccgcgcgcgcccacgtgctcgccgtcggccccacgacgcggaggtggaagagcgc 171 ||||||||||||| ||||| |||||||| || || |||| |||||||||||| ||||| Sbjct: 1214 gtccaccgcgcgccgccacgcgctcgccgccgctccgacgaggcggaggtggaacagcgc 1155 Query: 172 cggcagcacgaaggagagcagcgcgcacaccgtgctccccacgaacgccgcgaactcccc 231 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1154 cgggagcacgaaggagagcagcgcacacaccgtgctccccacgaacgccgcgaactcccc 1095 Query: 232 gaacgccggcacgaagcacgctatcgcggccagcgccgccaccaccgccacgcggctc 289 ||||||||||||||||||||| | ||| | || ||| |||||||||||||||||||| Sbjct: 1094 gaacgccggcacgaagcacgccaccgccgtcaccgcgcccaccaccgccacgcggctc 1037 Score = 145 bits (73), Expect = 1e-31 Identities = 93/100 (93%) Strand = Plus / Minus Query: 352 cagccgcgaccccacgatctcgtggatcgggtgcatcatcaccgcanacgtgagcgccag 411 |||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 989 cagccgcgcctccacgatctcgtggatcgggtgcatcatcaccgggaacgtgagcgccag 930 Query: 412 cgcgacgcacagcaccaccttgacggcggcggtggaccag 451 ||||||||||||||| | |||||||||||||||||||||| Sbjct: 929 cgcgacgcacagcacgatcttgacggcggcggtggaccag 890
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 210 bits (106), Expect = 3e-51 Identities = 160/178 (89%) Strand = Plus / Minus Query: 112 gtccaccgcgcgcgcccacgtgctcgccgtcggccccacgacgcggaggtggaagagcgc 171 ||||||||||||| ||||| |||||||| || || |||| |||||||||||| ||||| Sbjct: 33968893 gtccaccgcgcgccgccacgcgctcgccgccgctccgacgaggcggaggtggaacagcgc 33968834 Query: 172 cggcagcacgaaggagagcagcgcgcacaccgtgctccccacgaacgccgcgaactcccc 231 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 33968833 cgggagcacgaaggagagcagcgcacacaccgtgctccccacgaacgccgcgaactcccc 33968774 Query: 232 gaacgccggcacgaagcacgctatcgcggccagcgccgccaccaccgccacgcggctc 289 ||||||||||||||||||||| | ||| | || ||| |||||||||||||||||||| Sbjct: 33968773 gaacgccggcacgaagcacgccaccgccgtcaccgcgcccaccaccgccacgcggctc 33968716 Score = 111 bits (56), Expect = 2e-21 Identities = 70/75 (93%) Strand = Plus / Minus Query: 352 cagccgcgaccccacgatctcgtggatcgggtgcatcatcaccgcanacgtgagcgccag 411 |||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 33968668 cagccgcgcctccacgatctcgtggatcgggtgcatcatcaccgggaacgtgagcgccag 33968609 Query: 412 cgcgacgcacagcac 426 ||||||||||||||| Sbjct: 33968608 cgcgacgcacagcac 33968594 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 428 accttgacggcggcggtggaccag 451 |||||||||||||||||||||||| Sbjct: 33968508 accttgacggcggcggtggaccag 33968485 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 gcgccgccaccaccgccacg 283 |||||||||||||||||||| Sbjct: 29136714 gcgccgccaccaccgccacg 29136733
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 210 bits (106), Expect = 3e-51 Identities = 160/178 (89%) Strand = Plus / Minus Query: 112 gtccaccgcgcgcgcccacgtgctcgccgtcggccccacgacgcggaggtggaagagcgc 171 ||||||||||||| ||||| |||||||| || || |||| |||||||||||| ||||| Sbjct: 34059365 gtccaccgcgcgccgccacgcgctcgccgccgctccgacgaggcggaggtggaacagcgc 34059306 Query: 172 cggcagcacgaaggagagcagcgcgcacaccgtgctccccacgaacgccgcgaactcccc 231 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 34059305 cgggagcacgaaggagagcagcgcacacaccgtgctccccacgaacgccgcgaactcccc 34059246 Query: 232 gaacgccggcacgaagcacgctatcgcggccagcgccgccaccaccgccacgcggctc 289 ||||||||||||||||||||| | ||| | || ||| |||||||||||||||||||| Sbjct: 34059245 gaacgccggcacgaagcacgccaccgccgtcaccgcgcccaccaccgccacgcggctc 34059188 Score = 111 bits (56), Expect = 2e-21 Identities = 70/75 (93%) Strand = Plus / Minus Query: 352 cagccgcgaccccacgatctcgtggatcgggtgcatcatcaccgcanacgtgagcgccag 411 |||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 34059140 cagccgcgcctccacgatctcgtggatcgggtgcatcatcaccgggaacgtgagcgccag 34059081 Query: 412 cgcgacgcacagcac 426 ||||||||||||||| Sbjct: 34059080 cgcgacgcacagcac 34059066 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 428 accttgacggcggcggtggaccag 451 |||||||||||||||||||||||| Sbjct: 34058980 accttgacggcggcggtggaccag 34058957 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 gcgccgccaccaccgccacg 283 |||||||||||||||||||| Sbjct: 29228136 gcgccgccaccaccgccacg 29228155
>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence Length = 172337 Score = 210 bits (106), Expect = 3e-51 Identities = 160/178 (89%) Strand = Plus / Plus Query: 112 gtccaccgcgcgcgcccacgtgctcgccgtcggccccacgacgcggaggtggaagagcgc 171 ||||||||||||| ||||| |||||||| || || |||| |||||||||||| ||||| Sbjct: 88798 gtccaccgcgcgccgccacgcgctcgccgccgctccgacgaggcggaggtggaacagcgc 88857 Query: 172 cggcagcacgaaggagagcagcgcgcacaccgtgctccccacgaacgccgcgaactcccc 231 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 88858 cgggagcacgaaggagagcagcgcacacaccgtgctccccacgaacgccgcgaactcccc 88917 Query: 232 gaacgccggcacgaagcacgctatcgcggccagcgccgccaccaccgccacgcggctc 289 ||||||||||||||||||||| | ||| | || ||| |||||||||||||||||||| Sbjct: 88918 gaacgccggcacgaagcacgccaccgccgtcaccgcgcccaccaccgccacgcggctc 88975 Score = 111 bits (56), Expect = 2e-21 Identities = 70/75 (93%) Strand = Plus / Plus Query: 352 cagccgcgaccccacgatctcgtggatcgggtgcatcatcaccgcanacgtgagcgccag 411 |||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 89023 cagccgcgcctccacgatctcgtggatcgggtgcatcatcaccgggaacgtgagcgccag 89082 Query: 412 cgcgacgcacagcac 426 ||||||||||||||| Sbjct: 89083 cgcgacgcacagcac 89097 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Plus Query: 428 accttgacggcggcggtggaccag 451 |||||||||||||||||||||||| Sbjct: 89183 accttgacggcggcggtggaccag 89206
>dbj|AK121940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107D18, full insert sequence Length = 1515 Score = 204 bits (103), Expect = 2e-49 Identities = 157/175 (89%) Strand = Plus / Minus Query: 112 gtccaccgcgcgcgcccacgtgctcgccgtcggccccacgacgcggaggtggaagagcgc 171 ||||||||||||| ||||| |||||||| || || |||| |||||||||||| ||||| Sbjct: 1227 gtccaccgcgcgccgccacgcgctcgccgccgctccgacgaggcggaggtggaacagcgc 1168 Query: 172 cggcagcacgaaggagagcagcgcgcacaccgtgctccccacgaacgccgcgaactcccc 231 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1167 cgggagcacgaaggagagcagcgcacacaccgtgctccccacgaacgccgcgaactcccc 1108 Query: 232 gaacgccggcacgaagcacgctatcgcggccagcgccgccaccaccgccacgcgg 286 ||||||||||||||||||||| | ||| | || ||| ||||||||||||||||| Sbjct: 1107 gaacgccggcacgaagcacgccaccgccgtcaccgcgcccaccaccgccacgcgg 1053 Score = 137 bits (69), Expect = 3e-29 Identities = 83/88 (94%) Strand = Plus / Minus Query: 364 cacgatctcgtggatcgggtgcatcatcaccgcanacgtgagcgccagcgcgacgcacag 423 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 990 cacgatctcgtggatcgggtgcatcatcaccgggaacgtgagcgccagcgcgacgcacag 931 Query: 424 caccaccttgacggcggcggtggaccag 451 ||| | |||||||||||||||||||||| Sbjct: 930 cacgatcttgacggcggcggtggaccag 903
>ref|XM_477191.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1275 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 173 ggcagcacgaaggagagcagcgcgcacaccgtgctccc 210 |||||||||||||||||||||||||| ||||||||||| Sbjct: 1145 ggcagcacgaaggagagcagcgcgcaaaccgtgctccc 1108
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 173 ggcagcacgaaggagagcagcgcgcacaccgtgctccc 210 |||||||||||||||||||||||||| ||||||||||| Sbjct: 7344777 ggcagcacgaaggagagcagcgcgcaaaccgtgctccc 7344740
>dbj|AP005774.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0086N05 Length = 163670 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 173 ggcagcacgaaggagagcagcgcgcacaccgtgctccc 210 |||||||||||||||||||||||||| ||||||||||| Sbjct: 71458 ggcagcacgaaggagagcagcgcgcaaaccgtgctccc 71421
>dbj|AK105808.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-B09, full insert sequence Length = 1381 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 173 ggcagcacgaaggagagcagcgcgcacaccgtgctccc 210 |||||||||||||||||||||||||| ||||||||||| Sbjct: 1000 ggcagcacgaaggagagcagcgcgcaaaccgtgctccc 963
>gb|AY105589.1| Zea mays PCO140163 mRNA sequence Length = 670 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 365 acgatctcgtggatcgggtgcatcatcac 393 |||||||| |||||||||||||||||||| Sbjct: 72 acgatctcatggatcgggtgcatcatcac 44
>ref|XM_465462.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2777 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 119 gcgcgcgcccacgtgctcgccg 140 |||||||||||||||||||||| Sbjct: 2106 gcgcgcgcccacgtgctcgccg 2127
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 250 cgctatcgcggccagcgccgccaccaccgc 279 |||| |||| |||||||||||||||||||| Sbjct: 2241449 cgctgtcgccgccagcgccgccaccaccgc 2241478
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 262 cagcgccgccaccaccgccacg 283 |||||||||||||||||||||| Sbjct: 1631993 cagcgccgccaccaccgccacg 1632014
>emb|BX842578.1| Mycobacterium tuberculosis H37Rv complete genome; segment 7/13 Length = 346186 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 250 cgctatcgcggccagcgccgccaccaccgc 279 |||| |||| |||||||||||||||||||| Sbjct: 165413 cgctgtcgccgccagcgccgccaccaccgc 165442
>emb|BX248341.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 8/14 Length = 306050 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 250 cgctatcgcggccagcgccgccaccaccgc 279 |||| |||| |||||||||||||||||||| Sbjct: 18032 cgctgtcgccgccagcgccgccaccaccgc 18061
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 119 gcgcgcgcccacgtgctcgccg 140 |||||||||||||||||||||| Sbjct: 15333590 gcgcgcgcccacgtgctcgccg 15333569
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 258 cggccagcgccgccaccaccgc 279 |||||||||||||||||||||| Sbjct: 1637479 cggccagcgccgccaccaccgc 1637458
>dbj|AP005650.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0078K05 Length = 162901 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 119 gcgcgcgcccacgtgctcgccg 140 |||||||||||||||||||||| Sbjct: 4372 gcgcgcgcccacgtgctcgccg 4351
>dbj|AP005696.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0063K04 Length = 158792 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 119 gcgcgcgcccacgtgctcgccg 140 |||||||||||||||||||||| Sbjct: 144711 gcgcgcgcccacgtgctcgccg 144690
>emb|X69801.1|VCPHEI Volvox carteri mRNA for pherophorin I Length = 1539 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 261 ccagcgccgccaccaccgccac 282 |||||||||||||||||||||| Sbjct: 568 ccagcgccgccaccaccgccac 589
>dbj|AK106836.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-G07, full insert sequence Length = 2041 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 119 gcgcgcgcccacgtgctcgccg 140 |||||||||||||||||||||| Sbjct: 263 gcgcgcgcccacgtgctcgccg 242
>dbj|AK101296.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033H23, full insert sequence Length = 2777 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 119 gcgcgcgcccacgtgctcgccg 140 |||||||||||||||||||||| Sbjct: 2106 gcgcgcgcccacgtgctcgccg 2127
>ref|NM_190629.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1011 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 256 cgcggccagcgccgccaccaccgcc 280 ||||||| ||||||||||||||||| Sbjct: 180 cgcggccggcgccgccaccaccgcc 204
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 260 gccagcgccgccaccaccgcc 280 ||||||||||||||||||||| Sbjct: 784530 gccagcgccgccaccaccgcc 784550
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 265 cgccgccaccaccgccacgcg 285 ||||||||||||||||||||| Sbjct: 5395886 cgccgccaccaccgccacgcg 5395906
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 260 gccagcgccgccaccaccgcc 280 ||||||||||||||||||||| Sbjct: 381585 gccagcgccgccaccaccgcc 381605
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 actccccgaacgccggcacga 245 ||||||||||||||||||||| Sbjct: 12955961 actccccgaacgccggcacga 12955941
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 256 cgcggccagcgccgccaccaccgcc 280 ||||||| ||||||||||||||||| Sbjct: 36653757 cgcggccggcgccgccaccaccgcc 36653733
>dbj|AP004072.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529H11 Length = 165969 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 256 cgcggccagcgccgccaccaccgcc 280 ||||||| ||||||||||||||||| Sbjct: 127023 cgcggccggcgccgccaccaccgcc 126999
>emb|BX572098.1| Prochlorococcus marinus MIT9313 complete genome; segment 4/7 Length = 346683 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 257 gcggccagcgccgccaccaccgcca 281 ||||||||||||||| ||||||||| Sbjct: 308452 gcggccagcgccgccgccaccgcca 308476
>gb|AE001826.1| Deinococcus radiodurans R1 plasmid MP1, complete sequence Length = 177466 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 cgcggccagcgccgccaccac 276 ||||||||||||||||||||| Sbjct: 144849 cgcggccagcgccgccaccac 144869
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 261 ccagcgccgccaccaccgcca 281 ||||||||||||||||||||| Sbjct: 2331747 ccagcgccgccaccaccgcca 2331727
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 actccccgaacgccggcacga 245 ||||||||||||||||||||| Sbjct: 12910235 actccccgaacgccggcacga 12910215
>emb|AL731883.4|CNS08C8N Oryza sativa chromosome 12, . BAC OSJNBa0024B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148110 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 actccccgaacgccggcacga 245 ||||||||||||||||||||| Sbjct: 112009 actccccgaacgccggcacga 112029
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 gcggccagcgccgccaccaccgcc 280 ||||||||||||||||||| |||| Sbjct: 4030340 gcggccagcgccgccaccagcgcc 4030317
>ref|XM_469589.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2415 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gcgccgccaccaccgccacg 283 |||||||||||||||||||| Sbjct: 82 gcgccgccaccaccgccacg 63
>ref|XM_471316.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3450 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gccgccaccaccgccacgcg 285 |||||||||||||||||||| Sbjct: 960 gccgccaccaccgccacgcg 979
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ccagcgccgccaccaccgcc 280 |||||||||||||||||||| Sbjct: 284809 ccagcgccgccaccaccgcc 284790
>gb|AC146936.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1154F06 map near C10769, complete sequence Length = 194856 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gcgccgccaccaccgccacg 283 |||||||||||||||||||| Sbjct: 2577 gcgccgccaccaccgccacg 2558
>gb|AY659247.1| Synthetic construct Peudomonas aeruginosa clone FLH042067.01F PA3669 gene, partial cds Length = 981 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 258 cggccagcgccgccaccaccgcca 281 |||||||||||||||||| ||||| Sbjct: 52 cggccagcgccgccaccagcgcca 29
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 212 acgaacgccgcgaactccccgaacgccg 239 ||||||||||||||| || ||||||||| Sbjct: 986191 acgaacgccgcgaacgccgcgaacgccg 986164
>gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940128D9, complete sequence Length = 128585 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 151 gacgcggaggtggaagagcgccggcagc 178 ||||||| |||||||||||||| ||||| Sbjct: 70115 gacgcggtggtggaagagcgcctgcagc 70088
>gb|AY176327.1| Staphylococcus phage K, complete genome Length = 127395 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 cggagagcaagaaaaagtag 112 |||||||||||||||||||| Sbjct: 43496 cggagagcaagaaaaagtag 43515
>gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome Length = 897405 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ttgatgaacattttgaattg 42 |||||||||||||||||||| Sbjct: 586880 ttgatgaacattttgaattg 586861
>ref|XM_824027.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.01.2330) partial mRNA Length = 2094 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 gccagcgccgccaccaccgccacg 283 |||| ||||||||||||||||||| Sbjct: 1134 gccaccgccgccaccaccgccacg 1157
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 ccagcgccgccaccaccgcc 280 |||||||||||||||||||| Sbjct: 4881779 ccagcgccgccaccaccgcc 4881798
>ref|XM_823903.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.01.1090) partial mRNA Length = 636 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 gagcgccagcgcgacgcacagcac 426 |||||||| ||||||||||||||| Sbjct: 139 gagcgccaccgcgacgcacagcac 162
>gb|AC137997.2| Oryza sativa chromosome 3 BAC OJ1499_D04 genomic sequence, complete sequence Length = 91084 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gcgccgccaccaccgccacg 283 |||||||||||||||||||| Sbjct: 34662 gcgccgccaccaccgccacg 34643
>ref|NM_009021.2| Mus musculus retinoic acid induced 1 (Rai1), transcript variant 1, mRNA Length = 7348 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 259 ggccagcgccgccaccaccgccac 282 ||||| |||||||||||||||||| Sbjct: 219 ggccaccgccgccaccaccgccac 196
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 cacgatctcgtggatcgggt 383 |||||||||||||||||||| Sbjct: 985641 cacgatctcgtggatcgggt 985622
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ccagcgccgccaccaccgcc 280 |||||||||||||||||||| Sbjct: 101914 ccagcgccgccaccaccgcc 101895
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 cggccagcgccgccaccaccgcca 281 ||||||||||||||||| |||||| Sbjct: 205603 cggccagcgccgccaccgccgcca 205626
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ccagcgccgccaccaccgcc 280 |||||||||||||||||||| Sbjct: 12815 ccagcgccgccaccaccgcc 12796
>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14 Length = 344321 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 cggccagcgccgccaccaccgcca 281 ||||||||||||||||| |||||| Sbjct: 152000 cggccagcgccgccaccgccgcca 152023
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12 Length = 349354 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ccagcgccgccaccaccgcc 280 |||||||||||||||||||| Sbjct: 297718 ccagcgccgccaccaccgcc 297699
>emb|AL606991.3|OSJN00113 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032B23, complete sequence Length = 120640 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gccgccaccaccgccacgcg 285 |||||||||||||||||||| Sbjct: 75643 gccgccaccaccgccacgcg 75662
>emb|AL645526.14| Mouse DNA sequence from clone RP23-60F20 on chromosome 11 Contains the 5' end of the Pemt gene for phosphatidylethanolamine N-methyltransferase, the 5' end of the Rai1 gene for retinoic acid induced 1, a novel gene (4930412M03Rik) and three CpG islands, complete sequence Length = 143708 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 259 ggccagcgccgccaccaccgccac 282 ||||| |||||||||||||||||| Sbjct: 85727 ggccaccgccgccaccaccgccac 85704
>dbj|AB205151.1| Brevundimonas diminuta orf1-orf7 genes for hypothetical transmembrane protein, L-amino acid amidase, DNA polymerase III chi subunit, hypothetical proteins, hypothetical ABC transporter ATP-binding protein, partial and complete cds Length = 4446 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 252 ctatcgcggccagcgccgccaccaccgccacg 283 ||||| ||||||||||||| ||| |||||||| Sbjct: 165 ctatcccggccagcgccgcgaccgccgccacg 196
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ccagcgccgccaccaccgcc 280 |||||||||||||||||||| Sbjct: 4861258 ccagcgccgccaccaccgcc 4861239 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 cgccgccaccaccgccacgcggct 288 |||||||||||||| ||||||||| Sbjct: 1645080 cgccgccaccaccggcacgcggct 1645103
>dbj|AK139133.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730041O18 product:fucosyltransferase 9, full insert sequence Length = 3797 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 cagcgccgccaccaccgcca 281 |||||||||||||||||||| Sbjct: 498 cagcgccgccaccaccgcca 517
>ref|XM_694591.1| PREDICTED: Danio rerio similar to Rap guanine nucleotide exchange factor 6 (PDZ domain containing guanine nucleotide exchange factor 2) (PDZ-GEF2) (RA-GEF-2) (LOC571039), partial mRNA Length = 2377 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ccagcgccgccaccaccgcc 280 |||||||||||||||||||| Sbjct: 200 ccagcgccgccaccaccgcc 181
>dbj|AK154252.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630012D23 product:retinoic acid induced 1, full insert sequence Length = 7188 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 259 ggccagcgccgccaccaccgccac 282 ||||| |||||||||||||||||| Sbjct: 58 ggccaccgccgccaccaccgccac 35
>dbj|AK163871.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130099N17 product:fucosyltransferase 9, full insert sequence Length = 5161 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 cagcgccgccaccaccgcca 281 |||||||||||||||||||| Sbjct: 129 cagcgccgccaccaccgcca 148
>dbj|AK036183.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630044I03 product:fucosyltransferase 9, full insert sequence Length = 2337 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 cagcgccgccaccaccgcca 281 |||||||||||||||||||| Sbjct: 132 cagcgccgccaccaccgcca 151
>dbj|AK032177.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430407H24 product:fucosyltransferase 9, full insert sequence Length = 2004 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 cagcgccgccaccaccgcca 281 |||||||||||||||||||| Sbjct: 473 cagcgccgccaccaccgcca 492
>dbj|AK049167.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330009O11 product:hypothetical protein, full insert sequence Length = 1861 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 cagcgccgccaccaccgcca 281 |||||||||||||||||||| Sbjct: 183 cagcgccgccaccaccgcca 202
>dbj|AK049122.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330004C19 product:fucosyltransferase 9, full insert sequence Length = 1692 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 cagcgccgccaccaccgcca 281 |||||||||||||||||||| Sbjct: 289 cagcgccgccaccaccgcca 308
>dbj|AK047650.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length enriched library, clone:C030004N01 product:fucosyltransferase 9, full insert sequence Length = 3176 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 cagcgccgccaccaccgcca 281 |||||||||||||||||||| Sbjct: 128 cagcgccgccaccaccgcca 147
>dbj|AK033607.1| Mus musculus adult male cecum cDNA, RIKEN full-length enriched library, clone:9130026C15 product:fucosyltransferase 9, full insert sequence Length = 2581 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 cagcgccgccaccaccgcca 281 |||||||||||||||||||| Sbjct: 571 cagcgccgccaccaccgcca 590
>gb|BC049785.1| Mus musculus retinoic acid induced 1, mRNA (cDNA clone IMAGE:6511305), partial cds Length = 1717 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 259 ggccagcgccgccaccaccgccac 282 ||||| |||||||||||||||||| Sbjct: 219 ggccaccgccgccaccaccgccac 196
>dbj|AK043410.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730093G08 product:fucosyltransferase 9, full insert sequence Length = 2902 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 cagcgccgccaccaccgcca 281 |||||||||||||||||||| Sbjct: 170 cagcgccgccaccaccgcca 189
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gccgccaccaccgccacgcg 285 |||||||||||||||||||| Sbjct: 9980693 gccgccaccaccgccacgcg 9980712
>gb|AE009600.1| Brucella melitensis 16M chromosome I, section 157 of 195 of the complete sequence Length = 13556 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 ccagcgccgccaccaccgcc 280 |||||||||||||||||||| Sbjct: 4086 ccagcgccgccaccaccgcc 4105
>gb|AC016751.7| Homo sapiens BAC clone RP11-504O20 from 2, complete sequence Length = 176379 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 tgatgaacattttgaattgt 43 |||||||||||||||||||| Sbjct: 123864 tgatgaacattttgaattgt 123883
>gb|AE004786.1| Pseudomonas aeruginosa PAO1, section 347 of 529 of the complete genome Length = 10235 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 cggccagcgccgccaccaccgcca 281 |||||||||||||||||| ||||| Sbjct: 6497 cggccagcgccgccaccagcgcca 6520
>gb|AY954969.1| Bacteriophage G1, complete genome Length = 138715 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 cggagagcaagaaaaagtag 112 |||||||||||||||||||| Sbjct: 8674 cggagagcaagaaaaagtag 8693
>gb|AC096624.23| Mus musculus strain C57BL/6J chromosome 11 clone rp23-326m22, complete sequence Length = 227682 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 259 ggccagcgccgccaccaccgccac 282 ||||| |||||||||||||||||| Sbjct: 188897 ggccaccgccgccaccaccgccac 188920
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ccagcgccgccaccaccgcc 280 |||||||||||||||||||| Sbjct: 306802 ccagcgccgccaccaccgcc 306783
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 cggccagcgccgccaccacc 277 |||||||||||||||||||| Sbjct: 2882926 cggccagcgccgccaccacc 2882945 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 cgcggccagcgccgccaccaccgc 279 |||||||||||||||| ||||||| Sbjct: 2432924 cgcggccagcgccgcctccaccgc 2432947 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 gagcagcgcgcacaccgtgc 206 |||||||||||||||||||| Sbjct: 2314794 gagcagcgcgcacaccgtgc 2314775
>dbj|AK120806.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013I10, full insert sequence Length = 4794 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gccgccaccaccgccacgcg 285 |||||||||||||||||||| Sbjct: 1227 gccgccaccaccgccacgcg 1246
>emb|AJ005576.1|SGR005576 Streptomyces griseus minD gene Length = 2180 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 caccttgacggcggcggtgg 446 |||||||||||||||||||| Sbjct: 1581 caccttgacggcggcggtgg 1562
>ref|NM_010243.3| Mus musculus fucosyltransferase 9 (Fut9), mRNA Length = 11990 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 cagcgccgccaccaccgcca 281 |||||||||||||||||||| Sbjct: 329 cagcgccgccaccaccgcca 348
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ccagcgccgccaccaccgcc 280 |||||||||||||||||||| Sbjct: 4865019 ccagcgccgccaccaccgcc 4865000 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 cgccgccaccaccgccacgcggct 288 |||||||||||||| ||||||||| Sbjct: 1662056 cgccgccaccaccggcacgcggct 1662079
>emb|AL954321.8| Mouse DNA sequence from clone RP23-407M22 on chromosome 4, complete sequence Length = 65324 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 cagcgccgccaccaccgcca 281 |||||||||||||||||||| Sbjct: 26907 cagcgccgccaccaccgcca 26888
>gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome Length = 892758 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ttgatgaacattttgaattg 42 |||||||||||||||||||| Sbjct: 575122 ttgatgaacattttgaattg 575103
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 214 gaacgccgcgaactccccgaacgccggc 241 |||||||||||||||| ||| ||||||| Sbjct: 269427 gaacgccgcgaactccgcgagcgccggc 269400
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ccagcgccgccaccaccgcc 280 |||||||||||||||||||| Sbjct: 303169 ccagcgccgccaccaccgcc 303150
>dbj|AB024601.1| Pseudomonas aeruginosa dapD gene for tetrahydrodipicolinate N-succinyletransferase, complete cds, strain PAO1 Length = 14807 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 258 cggccagcgccgccaccaccgcca 281 |||||||||||||||||| ||||| Sbjct: 1539 cggccagcgccgccaccagcgcca 1516 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,771,302 Number of Sequences: 3902068 Number of extensions: 2771302 Number of successful extensions: 67577 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 90 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64815 Number of HSP's gapped (non-prelim): 2761 length of query: 451 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 429 effective length of database: 17,147,199,772 effective search space: 7356148702188 effective search space used: 7356148702188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
