Clone Information

BLAST Search Result

Clone Name	rbart13d09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity fa...	32	0.69
2	MTG8_MOUSE (Q61909) Protein CBFA2T1 (MTG8 protein)	32	0.69
3	MTG8_HUMAN (Q06455) Protein CBFA2T1 (Protein MTG8) (Protein ETO)...	32	0.69
4	ELOA2_HUMAN (Q8IYF1) RNA polymerase II transcription factor SIII...	32	0.69
5	ELOA3_HUMAN (Q8NG57) RNA polymerase II transcription factor SIII...	32	0.90
6	SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)	32	1.2
7	CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22	32	1.2
8	VGLG_HHV2H (P13290) Glycoprotein G	31	1.5
9	TMSP8_RAT (P83748) Transmembrane serine protease 8 precursor (EC...	31	2.0
10	PTPR2_RAT (Q63475) Receptor-type tyrosine-protein phosphatase N2...	30	2.6
11	RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-ri...	30	2.6
12	LCE2D_HUMAN (Q5TA82) Late cornified envelope protein 2D (Late en...	30	2.6
13	RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-ri...	30	3.4
14	IF2_LEPIN (Q8F7K1) Translation initiation factor IF-2	30	3.4
15	IF2_LEPIC (Q72NX3) Translation initiation factor IF-2	30	3.4
16	MTCD_TETTH (Q8WSW3) Cadmium metallothionein precursor (MT-Cd) (C...	30	3.4
17	CBP1_CAEEL (P34545) Protein cbp-1	30	3.4
18	LCE2C_HUMAN (Q5TA81) Late cornified envelope protein 2C (Late en...	30	3.4
19	NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurof...	30	3.4
20	PRB4S_HUMAN (P10163) Basic salivary proline-rich protein 4 allel...	30	4.4
21	SLBP_DROME (Q9VAN6) Histone RNA hairpin-binding protein (Histone...	30	4.4
22	SSPA_STAAN (Q7A6A6) Glutamyl endopeptidase precursor (EC 3.4.21....	29	5.8
23	SSPA_STAAM (Q99V45) Glutamyl endopeptidase precursor (EC 3.4.21....	29	5.8
24	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	29	5.8
25	RACD_STRTR (P29079) Aspartate racemase (EC 5.1.1.13)	29	5.8
26	ODO1_YEAST (P20967) 2-oxoglutarate dehydrogenase E1 component, m...	29	5.8
27	IF2_CORJK (Q4JV51) Translation initiation factor IF-2	29	7.6
28	SSPA_STAAU (P04188) Glutamyl endopeptidase precursor (EC 3.4.21....	29	7.6
29	CORA_HPBDW (P17191) Core antigen	29	7.6
30	CORA_HPBDC (P30027) Core antigen	29	7.6
31	KRA59_HUMAN (P26371) Keratin-associated protein 5-9 (Keratin-ass...	29	7.6
32	CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22	29	7.6
33	SSPA_STAAC (Q5HH35) Glutamyl endopeptidase precursor (EC 3.4.21....	28	9.9
34	RSD1_SCHPO (O13845) RNA-binding protein rsd1	28	9.9
35	PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9	28	9.9
36	FYB_HUMAN (O15117) FYN-binding protein (FYN-T-binding protein) (...	28	9.9
37	KBTB4_MOUSE (Q8R179) Kelch repeat and BTB domain-containing prot...	28	9.9
38	KBTB4_HUMAN (Q9NVX7) Kelch repeat and BTB domain-containing prot...	28	9.9
39	HPS4_HUMAN (Q9NQG7) Hermansky-Pudlak syndrome 4 protein (Light-e...	28	9.9
40	KBTB4_MACFA (Q9N010) Kelch repeat and BTB domain-containing prot...	28	9.9
41	DCAK1_MOUSE (Q9JLM8) Serine/threonine-protein kinase DCAMKL1 (EC...	28	9.9
42	DCAK1_HUMAN (O15075) Serine/threonine-protein kinase DCAMKL1 (EC...	28	9.9
43	PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)	28	9.9

>CPSF6_BRARE (Q6NWC6) Cleavage and polyadenylation specificity factor 6|
          Length = 545

 Score = 32.3 bits (72), Expect = 0.69
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -1

Query: 351 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRD 238
           PPG   PAP  N   P     P N  P+++GR P P D
Sbjct: 343 PPGGPPPAPHVN---PAFFPPPGNNMPSSDGRGPPPGD 377

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>MTG8_MOUSE (Q61909) Protein CBFA2T1 (MTG8 protein)|
          Length = 577

 Score = 32.3 bits (72), Expect = 0.69
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 351 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNG 223
           PP +   APR +S +P    +  + SP A   +PSP +G  NG
Sbjct: 31  PPPTTQGAPRTSSFTPTTLTNGTSHSPTALNGAPSPPNGFSNG 73

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>MTG8_HUMAN (Q06455) Protein CBFA2T1 (Protein MTG8) (Protein ETO) (Eigth twenty|
           one protein) (Cyclin D-related protein) (Zinc finger
           MYND domain-containing protein 2)
          Length = 604

 Score = 32.3 bits (72), Expect = 0.69
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 351 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNG 223
           PP +   APR +S +P    +  + SP A   +PSP +G  NG
Sbjct: 58  PPPTTQGAPRTSSFTPTTLTNGTSHSPTALNGAPSPPNGFSNG 100

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>ELOA2_HUMAN (Q8IYF1) RNA polymerase II transcription factor SIII subunit A2|
           (Elongin A2) (EloA2) (Transcription elongation factor B
           polypeptide 3B)
          Length = 753

 Score = 32.3 bits (72), Expect = 0.69
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 354 TPPGSRSPAPRENSRSPMKADSPNNMSPAANGR 256
           TPPG + P PR +SR P        ++PA +GR
Sbjct: 135 TPPGQQRPHPRSHSREPRAERKCPRIAPADSGR 167

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>ELOA3_HUMAN (Q8NG57) RNA polymerase II transcription factor SIII subunit A3|
           (Elongin A3) (EloA3) (Transcription elongation factor B
           polypeptide 3C)
          Length = 546

 Score = 32.0 bits (71), Expect = 0.90
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 354 TPPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSP 244
           TPPG + P PR  SR P        M+PA +G    P
Sbjct: 135 TPPGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDP 171

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>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)|
          Length = 303

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -1

Query: 342 SRSPAPRENSRSPMKADSPNNMSPAANGRSPSPR 241
           SRSP  + + RSP K+ S  +  P +  RSPSPR
Sbjct: 233 SRSPKAKSSRRSPAKSTS-RSPGPRSKSRSPSPR 265

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>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -1

Query: 342 SRSPAPRENSRSPMKAD---SPNNMSPAANGRSPSP 244
           +RSP+PR  S SP   D   SP   +P+   R PSP
Sbjct: 17  TRSPSPRTQSPSPRDEDGSRSPGERTPSPPSRDPSP 52



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -1

Query: 348 PGSRSPAPREN--SRSPMKADSPNNMSPAAN-GRSPSPR 241
           P SRSP PR    SR  +++ SP   SPA    RS SPR
Sbjct: 81  PRSRSPTPRSQSPSRRSVRSPSPRQGSPARRVDRSSSPR 119



 Score = 29.6 bits (65), Expect = 4.4
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 348 PGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGNHR 214
           P +RSP PR +SR           SP   G+ P PR  +  G++R
Sbjct: 118 PRARSPPPRRHSR-----------SPPLRGQPPPPRHRDAGGDYR 151



 Score = 29.6 bits (65), Expect = 4.4
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 348 PGSRSPAPRENSRSPMKADSPNNMSPA-ANGRSPSPRD 238
           PG R+P+P     SP ++      SP+    RS SPRD
Sbjct: 38  PGERTPSPPSRDPSPYRSPGERTPSPSPRRDRSLSPRD 75

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>VGLG_HHV2H (P13290) Glycoprotein G|
          Length = 699

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -1

Query: 354 TPPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPS 247
           TPPG  +P P   S +P  ADSP   SP A    PS
Sbjct: 475 TPPGPATPGPVGASAAP-TADSPLTASPPATAPGPS 509

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>TMSP8_RAT (P83748) Transmembrane serine protease 8 precursor (EC 3.4.21.-)|
           (Distal intestinal serine protease) (Transmembrane
           serine protease 1) (TMSP-1)
          Length = 304

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 192 VMHFHWVHDGCHCLRRPWGSGYDHLQLG 275
           ++H  WV    HC RRP  S + H+++G
Sbjct: 61  LIHEVWVLTAAHCFRRPLNSSFYHVKVG 88

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>PTPR2_RAT (Q63475) Receptor-type tyrosine-protein phosphatase N2 precursor|
           (EC 3.1.3.48) (R-PTP-N2) (PTP NE-6) (PTPNE6) (Phogrin)
          Length = 1004

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 351 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSP-SPRDGEDN 226
           PPG   P PR    SPM+A  P   +PA + R P  P D +D+
Sbjct: 250 PPGENDPEPRYLVHSPMRAPRP-FAAPALSQRWPLPPGDSKDS 291

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>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1|
           (RNA-binding protein srp-5) (CeSRp75)
          Length = 312

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = -1

Query: 339 RSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGN 220
           RSP+P   SRSP +  SP         RS SP D  D  N
Sbjct: 279 RSPSPPRGSRSPSEKGSPR------RSRSASPMDNGDGDN 312

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>LCE2D_HUMAN (Q5TA82) Late cornified envelope protein 2D (Late envelope protein|
           12) (Small proline-rich-like epidermal differentiation
           complex protein 1A)
          Length = 110

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +3

Query: 291 CQPSSDSCCSPLVQGFCCQEGWG 359
           C PSS SCC P   G CC  G G
Sbjct: 48  CGPSSGSCCGP-SSGGCCSSGGG 69

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>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4|
           (RNA-binding protein srp-2) (CeSC35)
          Length = 196

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 339 RSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGNHR 214
           RS +PR  SRSP  + S +     +  RSP  RD  D+ + R
Sbjct: 115 RSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRR 156

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>IF2_LEPIN (Q8F7K1) Translation initiation factor IF-2|
          Length = 880

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 351 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRD 238
           PP    P P ++ +SP+   +P++ SPA    SP  +D
Sbjct: 73  PPVMPLPLPDDSGQSPIVRPAPSSHSPAKREESPGKQD 110

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>IF2_LEPIC (Q72NX3) Translation initiation factor IF-2|
          Length = 891

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 351 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRD 238
           PP    P P ++ +SP+   +P++ SPA    SP  +D
Sbjct: 73  PPVMPLPLPGDSGQSPIVRPAPSSHSPAKREESPGKQD 110

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>MTCD_TETTH (Q8WSW3) Cadmium metallothionein precursor (MT-Cd) (Cd-MT)|
          Length = 162

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 288 GCQPSSDSCCSPLVQGFCC 344
           GC+ +S  CC P+ QG CC
Sbjct: 104 GCKCTSCQCCKPVQQGCCC 122

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>CBP1_CAEEL (P34545) Protein cbp-1|
          Length = 2056

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 351 PPGSRSPAPRENSRSPMKAD-SPNNMSPAANGRSPSPRDG 235
           PPG ++      +RSPM  + +PN MSP + GR P P  G
Sbjct: 121 PPGQQNAF----NRSPMMPNGTPNMMSPPSMGRVPGPSPG 156

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>LCE2C_HUMAN (Q5TA81) Late cornified envelope protein 2C (Late envelope protein|
           11)
          Length = 110

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +3

Query: 291 CQPSSDSCCSPLVQGFCCQEGWG 359
           C PSS SCC P   G CC  G G
Sbjct: 48  CGPSSGSCCGP-SSGGCCSSGAG 69

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>NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurofilament|
           protein) (Neurofilament heavy polypeptide) (NF-H)
          Length = 1072

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = -1

Query: 354 TPPGSRSPAPREN---SRSPMKADSPNNMSPAANGRSPS 247
           +P G++SPA  ++   ++SP +A SP    P A  +SP+
Sbjct: 696 SPAGAKSPAEAKSPVVAKSPAEAKSPAEAKPPAEAKSPA 734

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>PRB4S_HUMAN (P10163) Basic salivary proline-rich protein 4 allele S precursor|
           (Salivary proline-rich protein Po) (Parotid o protein)
           [Contains: Protein N1; Glycosylated protein A]
          Length = 247

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 376 QGEGPEPHPSWQQKPCTKGEQQESDEG*QP**HEPSCKWS*PEPQGRRRQWQP 218
           Q +GP PHP   ++P  +G  Q   +G  P    P  K   P PQG  +  +P
Sbjct: 88  QSQGPPPHPGKPERPPPQGGNQ--SQGTPP----PPGKPERPPPQGGNQSHRP 134

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>SLBP_DROME (Q9VAN6) Histone RNA hairpin-binding protein (Histone|
           stem-loop-binding protein)
          Length = 276

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -1

Query: 342 SRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGED 229
           S +P   ENSRS    +SPN+ + +ANG + +P+ G +
Sbjct: 118 SFTPPSNENSRS----NSPNSSNSSANGDAAAPKGGNN 151

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>SSPA_STAAN (Q7A6A6) Glutamyl endopeptidase precursor (EC 3.4.21.19)|
           (Staphylococcal serine proteinase) (V8 protease) (V8
           proteinase) (Endoproteinase Glu-C)
          Length = 342

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 351 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGNH 217
           P    +P    N  +P   D+PNN     N  +P+  D  DNG++
Sbjct: 289 PNNPDNPDNPNNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDN 333

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>SSPA_STAAM (Q99V45) Glutamyl endopeptidase precursor (EC 3.4.21.19)|
           (Staphylococcal serine proteinase) (V8 protease) (V8
           proteinase) (Endoproteinase Glu-C)
          Length = 342

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 351 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGNH 217
           P    +P    N  +P   D+PNN     N  +P+  D  DNG++
Sbjct: 289 PNNPDNPDNPNNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDN 333

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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = -1

Query: 351 PPGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPR 241
           PP    P P    RSP         SP    RSPSPR
Sbjct: 577 PPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPR 613

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>RACD_STRTR (P29079) Aspartate racemase (EC 5.1.1.13)|
          Length = 243

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 142 VHHLVRVESRSNSSYSYKTLQNLEQRLACTSLILSCT 32
           ++H ++     N    Y+ L+   +RL C  +IL CT
Sbjct: 162 IYHEIKESDHLNQELYYEILEEAVERLNCEKVILGCT 198

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>ODO1_YEAST (P20967) 2-oxoglutarate dehydrogenase E1 component, mitochondrial|
           precursor (EC 1.2.4.2) (Alpha-ketoglutarate
           dehydrogenase)
          Length = 1014

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 10  GVSNTEIEYTIKSNSYRQVFAQDFGEFCNCRKNLIDSRLSPGDALPLGEHWK 165
           GV   E  Y++ S  Y  ++   FG+F N  + +ID  ++ G+     + WK
Sbjct: 718 GVMGFEYGYSLTSPDYLVMWEAQFGDFANTAQVIIDQFIAGGE-----QKWK 764

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>IF2_CORJK (Q4JV51) Translation initiation factor IF-2|
          Length = 922

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 348 PGSRSPAPRENSRSPMKADSPNNMSPAANGRSPSPRDGE 232
           PG++ P P+   R+P  A++P +    A   +P PR G+
Sbjct: 156 PGAK-PGPKPGGRAPRVANNPFSSGAPAERPAPRPRGGQ 193

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>SSPA_STAAU (P04188) Glutamyl endopeptidase precursor (EC 3.4.21.19)|
           (Staphylococcal serine proteinase) (V8 protease) (V8
           proteinase) (Endoproteinase Glu-C)
          Length = 336

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 333 PAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGNH 217
           P   +N  +P   D+PNN     N  +P+  D  DNG++
Sbjct: 289 PNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDN 327

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>CORA_HPBDW (P17191) Core antigen|
          Length = 305

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 339 RSPAPRENSRSPMKADSPNNMSPAANGRSPSPR 241
           RS +    + SP +A SP   S +++ RSPSPR
Sbjct: 272 RSKSRERRAPSPQRAGSPLPRSSSSHHRSPSPR 304

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>CORA_HPBDC (P30027) Core antigen|
          Length = 305

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 339 RSPAPRENSRSPMKADSPNNMSPAANGRSPSPR 241
           RS +    + SP +A SP   S +++ RSPSPR
Sbjct: 272 RSKSRERRAPSPQRAGSPLPRSSSSHHRSPSPR 304

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>KRA59_HUMAN (P26371) Keratin-associated protein 5-9 (Keratin-associated protein|
           5.9) (Ultrahigh sulfur keratin-associated protein 5.9)
           (Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra
           high-sulfur matrix protein A) (UHS keratin A) (UHS KerA)
          Length = 169

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 273 GSCY*GCQPSSDSCCSPLVQGFCCQ 347
           GSC  GC+    SCC+P+   +CC+
Sbjct: 22  GSCGSGCRGCGPSCCAPV---YCCK 43

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>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22|
          Length = 907

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
 Frame = -1

Query: 354 TPPGSRSPAPREN----SRSPMK-ADSPNNMSPAANGRSPSPR 241
           +P GSRSP+PR      SRSP++  +S    + AA G S + R
Sbjct: 823 SPSGSRSPSPRRRRDSPSRSPVRDRESGGRAAAAAPGNSEARR 865

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>SSPA_STAAC (Q5HH35) Glutamyl endopeptidase precursor (EC 3.4.21.19)|
           (Staphylococcal serine proteinase) (V8 protease) (V8
           proteinase) (Endoproteinase Glu-C)
          Length = 336

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 333 PAPRENSRSPMKADSPNNMSPAANGRSPSPRDGEDNGN 220
           P   +N  +P   D+PNN     N  +P+  D  DNG+
Sbjct: 289 PNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGD 326

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>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = -1

Query: 345 GSRSPAPREN-----SRSPMKADSPNNMSPAANGRSPSPR 241
           GSRSP+P  +     SRSP+++   +  S ++  R PS R
Sbjct: 127 GSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSR 166

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>PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9|
          Length = 736

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 312 RSPMKADSPNNMSPAANGRSPSPRDGEDNGNHR 214
           R P+ A+SP N SP A    P+  DG+ N   R
Sbjct: 250 RVPLTANSPANRSPNAQYNDPNRPDGQFNQPRR 282

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>FYB_HUMAN (O15117) FYN-binding protein (FYN-T-binding protein) (FYB-120/130)|
           (p120/p130) (SLP-76-associated phosphoprotein)
           (SLAP-130)
          Length = 783

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 348 PGSRSPAPREN-SRSPMKADSPNNMSPAANGRSPSPRDGEDNGNH 217
           P S+ P P  + S+ P+ +  P N+ P  + +SP   D +D   H
Sbjct: 400 PASQPPLPASHPSQPPVPSLPPRNIKPPFDLKSPVNEDNQDGVTH 444

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>KBTB4_MOUSE (Q8R179) Kelch repeat and BTB domain-containing protein 4 (BTB and|
           kelch domain-containing protein 4)
          Length = 534

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +3

Query: 312 CCSPLVQGF---CCQEGWGSGPSPWQV 383
           C +PL+  F   C  E W S PS W++
Sbjct: 459 CYNPLLDSFTRLCLPEAWSSAPSLWKI 485

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>KBTB4_HUMAN (Q9NVX7) Kelch repeat and BTB domain-containing protein 4 (BTB and|
           kelch domain-containing protein 4)
          Length = 518

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +3

Query: 312 CCSPLVQGF---CCQEGWGSGPSPWQV 383
           C +PL+  F   C  E W S PS W++
Sbjct: 443 CYNPLLDSFTRLCLPEAWSSAPSLWKI 469

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>HPS4_HUMAN (Q9NQG7) Hermansky-Pudlak syndrome 4 protein (Light-ear protein|
           homolog)
          Length = 708

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = -3

Query: 280 HEPSCKWS*PEPQGRRRQWQPSCTQWKCITRWWLSGSNSSSVHPVGVHHLVRVESRSNSS 101
           H  S  W+ P+P            +  C     LSG +  S+ P G+H+  R E    SS
Sbjct: 300 HVESMAWTTPDPTSPDEACPDGRKENGC-----LSGHDLESIRPAGLHNSARGEVLGLSS 354

Query: 100 YSYKTLQNLEQRL 62
              K L  L++ L
Sbjct: 355 SLGKELVFLQEEL 367

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>KBTB4_MACFA (Q9N010) Kelch repeat and BTB domain-containing protein 4|
          Length = 543

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +3

Query: 312 CCSPLVQGF---CCQEGWGSGPSPWQV 383
           C +PL+  F   C  E W S PS W++
Sbjct: 468 CYNPLLDSFTRLCLPEAWSSAPSLWKI 494

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>DCAK1_MOUSE (Q9JLM8) Serine/threonine-protein kinase DCAMKL1 (EC 2.7.11.1)|
           (Doublecortin-like and CAM kinase-like 1)
          Length = 756

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
 Frame = -1

Query: 342 SRSPAPRENSRSPMKADSPN-----NMSPAANGRSPSP 244
           ++SP P   S+SP    S N      +S   +G+SPSP
Sbjct: 296 TKSPGPSRRSKSPASTSSVNGTPGSQLSTPRSGKSPSP 333

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>DCAK1_HUMAN (O15075) Serine/threonine-protein kinase DCAMKL1 (EC 2.7.11.1)|
           (Doublecortin-like and CAM kinase-like 1)
          Length = 740

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
 Frame = -1

Query: 342 SRSPAPRENSRSPMKADSPN-----NMSPAANGRSPSP 244
           ++SP P   S+SP    S N      +S   +G+SPSP
Sbjct: 296 TKSPGPSRRSKSPASTSSVNGTPGSQLSTPRSGKSPSP 333

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>PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)|
          Length = 939

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 354 TPPGSRSPAPRENSRSPMKADSPNNMSPAANGRSP 250
           T PG  +P P+E+SR P    S       A G SP
Sbjct: 270 TAPGGTAPVPKEDSRLPAPKGSLAEQDAPAPGCSP 304


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,115,763
Number of Sequences: 219361
Number of extensions: 1157807
Number of successful extensions: 4789
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 4213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4768
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result