>ref|XM_550191.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1332
Score = 97.6 bits (49), Expect = 3e-17
Identities = 159/195 (81%), Gaps = 3/195 (1%)
Strand = Plus / Minus
Query: 288 ggctgtcagccttcatcggactcctgctgttctcccttggtgcagggcttctgctgccag 347
|||||||||| |||| || |||||||||| ||||||||||||| || |||||| ||
Sbjct: 973 ggctgtcagctctcattgggctcctgctgt---cccttggtgcaggactcctgctggcat 917
Query: 348 gaggggtggggctccgggccctccccttggcaggtgaagcactcctcctagggctgcggc 407
|||||| ||||| ||| |||||| |||| ||||||||||| ||||||||||||||||
Sbjct: 916 taggggtagggctgcggttcctcccgttgggtggtgaagcacttctcctagggctgcggc 857
Query: 408 tgtcacgggggctcctcatagggctgcgactgccacgggggctcttcatagggctgcgac 467
| ||||| ||||| | | ||||||| | || | || |||||| | ||||||||||||
Sbjct: 856 tatcacgagggcttcccctagggctctgggtgtcgcgagggctccccttagggctgcgac 797
Query: 468 tgtctcgggggctcc 482
|||| ||||||||||
Sbjct: 796 tgtcacgggggctcc 782
Score = 87.7 bits (44), Expect = 3e-14
Identities = 77/88 (87%)
Strand = Plus / Minus
Query: 396 tagggctgcggctgtcacgggggctcctcatagggctgcgactgccacgggggctcttca 455
|||||||||| |||||||||||||||| | |||||||||||||| |||||||||| |
Sbjct: 808 tagggctgcgactgtcacgggggctccccctagggctgcgactgtcacgggggcttcccc 749
Query: 456 tagggctgcgactgtctcgggggctcct 483
||||||| |||||||| || ||||||||
Sbjct: 748 tagggctccgactgtcacgagggctcct 721
Score = 77.8 bits (39), Expect = 3e-11
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 394 cctagggctgcggctgtcacgggggctcctcatagggctgcgactgccacgggggctctt 453
||||||||| || |||| || ||||||| | |||||||||||||| |||||||||||
Sbjct: 840 cctagggctctgggtgtcgcgagggctccccttagggctgcgactgtcacgggggctccc 781
Query: 454 catagggctgcgactgtctcgggggct 480
| |||||||||||||||| ||||||||
Sbjct: 780 cctagggctgcgactgtcacgggggct 754
Score = 61.9 bits (31), Expect = 2e-06
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 389 ctcctcctagggctgcggctgtcacgggggctcctcatagggctgcgactgccacggggg 448
|||| |||||||||||| |||||||||||||| | | ||||||| |||||| |||| |||
Sbjct: 785 ctccccctagggctgcgactgtcacgggggcttcccctagggctccgactgtcacgaggg 726
Query: 449 ctc 451
|||
Sbjct: 725 ctc 723
Score = 46.1 bits (23), Expect = 0.11
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 215 cgatggttgccattgtcttcgccgtccctggggctcgggctacgaccatttgcagctggg 274
||||| |||||||||||||| ||||||||||| ||||| || ||||| |||||||
Sbjct: 1067 cgatgattgccattgtcttcataatccctggggcttgggctccggccattggcagctgta 1008
Query: 275 ctcatgt 281
|||||||
Sbjct: 1007 ctcatgt 1001
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 97.6 bits (49), Expect = 3e-17
Identities = 159/195 (81%), Gaps = 3/195 (1%)
Strand = Plus / Plus
Query: 288 ggctgtcagccttcatcggactcctgctgttctcccttggtgcagggcttctgctgccag 347
|||||||||| |||| || |||||||||| ||||||||||||| || |||||| ||
Sbjct: 2985688 ggctgtcagctctcattgggctcctgctgt---cccttggtgcaggactcctgctggcat 2985744
Query: 348 gaggggtggggctccgggccctccccttggcaggtgaagcactcctcctagggctgcggc 407
|||||| ||||| ||| |||||| |||| ||||||||||| ||||||||||||||||
Sbjct: 2985745 taggggtagggctgcggttcctcccgttgggtggtgaagcacttctcctagggctgcggc 2985804
Query: 408 tgtcacgggggctcctcatagggctgcgactgccacgggggctcttcatagggctgcgac 467
| ||||| ||||| | | ||||||| | || | || |||||| | ||||||||||||
Sbjct: 2985805 tatcacgagggcttcccctagggctctgggtgtcgcgagggctccccttagggctgcgac 2985864
Query: 468 tgtctcgggggctcc 482
|||| ||||||||||
Sbjct: 2985865 tgtcacgggggctcc 2985879
Score = 87.7 bits (44), Expect = 3e-14
Identities = 77/88 (87%)
Strand = Plus / Plus
Query: 396 tagggctgcggctgtcacgggggctcctcatagggctgcgactgccacgggggctcttca 455
|||||||||| |||||||||||||||| | |||||||||||||| |||||||||| |
Sbjct: 2985853 tagggctgcgactgtcacgggggctccccctagggctgcgactgtcacgggggcttcccc 2985912
Query: 456 tagggctgcgactgtctcgggggctcct 483
||||||| |||||||| || ||||||||
Sbjct: 2985913 tagggctccgactgtcacgagggctcct 2985940
Score = 77.8 bits (39), Expect = 3e-11
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 394 cctagggctgcggctgtcacgggggctcctcatagggctgcgactgccacgggggctctt 453
||||||||| || |||| || ||||||| | |||||||||||||| |||||||||||
Sbjct: 2985821 cctagggctctgggtgtcgcgagggctccccttagggctgcgactgtcacgggggctccc 2985880
Query: 454 catagggctgcgactgtctcgggggct 480
| |||||||||||||||| ||||||||
Sbjct: 2985881 cctagggctgcgactgtcacgggggct 2985907
Score = 61.9 bits (31), Expect = 2e-06
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 389 ctcctcctagggctgcggctgtcacgggggctcctcatagggctgcgactgccacggggg 448
|||| |||||||||||| |||||||||||||| | | ||||||| |||||| |||| |||
Sbjct: 2985876 ctccccctagggctgcgactgtcacgggggcttcccctagggctccgactgtcacgaggg 2985935
Query: 449 ctc 451
|||
Sbjct: 2985936 ctc 2985938
Score = 46.1 bits (23), Expect = 0.11
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 215 cgatggttgccattgtcttcgccgtccctggggctcgggctacgaccatttgcagctggg 274
||||| |||||||||||||| ||||||||||| ||||| || ||||| |||||||
Sbjct: 2985594 cgatgattgccattgtcttcataatccctggggcttgggctccggccattggcagctgta 2985653
Query: 275 ctcatgt 281
|||||||
Sbjct: 2985654 ctcatgt 2985660
>dbj|AP003225.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0011G08
Length = 139490
Score = 97.6 bits (49), Expect = 3e-17
Identities = 159/195 (81%), Gaps = 3/195 (1%)
Strand = Plus / Plus
Query: 288 ggctgtcagccttcatcggactcctgctgttctcccttggtgcagggcttctgctgccag 347
|||||||||| |||| || |||||||||| ||||||||||||| || |||||| ||
Sbjct: 67205 ggctgtcagctctcattgggctcctgctgt---cccttggtgcaggactcctgctggcat 67261
Query: 348 gaggggtggggctccgggccctccccttggcaggtgaagcactcctcctagggctgcggc 407
|||||| ||||| ||| |||||| |||| ||||||||||| ||||||||||||||||
Sbjct: 67262 taggggtagggctgcggttcctcccgttgggtggtgaagcacttctcctagggctgcggc 67321
Query: 408 tgtcacgggggctcctcatagggctgcgactgccacgggggctcttcatagggctgcgac 467
| ||||| ||||| | | ||||||| | || | || |||||| | ||||||||||||
Sbjct: 67322 tatcacgagggcttcccctagggctctgggtgtcgcgagggctccccttagggctgcgac 67381
Query: 468 tgtctcgggggctcc 482
|||| ||||||||||
Sbjct: 67382 tgtcacgggggctcc 67396
Score = 87.7 bits (44), Expect = 3e-14
Identities = 77/88 (87%)
Strand = Plus / Plus
Query: 396 tagggctgcggctgtcacgggggctcctcatagggctgcgactgccacgggggctcttca 455
|||||||||| |||||||||||||||| | |||||||||||||| |||||||||| |
Sbjct: 67370 tagggctgcgactgtcacgggggctccccctagggctgcgactgtcacgggggcttcccc 67429
Query: 456 tagggctgcgactgtctcgggggctcct 483
||||||| |||||||| || ||||||||
Sbjct: 67430 tagggctccgactgtcacgagggctcct 67457
Score = 77.8 bits (39), Expect = 3e-11
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 394 cctagggctgcggctgtcacgggggctcctcatagggctgcgactgccacgggggctctt 453
||||||||| || |||| || ||||||| | |||||||||||||| |||||||||||
Sbjct: 67338 cctagggctctgggtgtcgcgagggctccccttagggctgcgactgtcacgggggctccc 67397
Query: 454 catagggctgcgactgtctcgggggct 480
| |||||||||||||||| ||||||||
Sbjct: 67398 cctagggctgcgactgtcacgggggct 67424
Score = 61.9 bits (31), Expect = 2e-06
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 389 ctcctcctagggctgcggctgtcacgggggctcctcatagggctgcgactgccacggggg 448
|||| |||||||||||| |||||||||||||| | | ||||||| |||||| |||| |||
Sbjct: 67393 ctccccctagggctgcgactgtcacgggggcttcccctagggctccgactgtcacgaggg 67452
Query: 449 ctc 451
|||
Sbjct: 67453 ctc 67455
Score = 46.1 bits (23), Expect = 0.11
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 215 cgatggttgccattgtcttcgccgtccctggggctcgggctacgaccatttgcagctggg 274
||||| |||||||||||||| ||||||||||| ||||| || ||||| |||||||
Sbjct: 67111 cgatgattgccattgtcttcataatccctggggcttgggctccggccattggcagctgta 67170
Query: 275 ctcatgt 281
|||||||
Sbjct: 67171 ctcatgt 67177
>dbj|AK071635.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100L15, full
insert sequence
Length = 1377
Score = 97.6 bits (49), Expect = 3e-17
Identities = 159/195 (81%), Gaps = 3/195 (1%)
Strand = Plus / Minus
Query: 288 ggctgtcagccttcatcggactcctgctgttctcccttggtgcagggcttctgctgccag 347
|||||||||| |||| || |||||||||| ||||||||||||| || |||||| ||
Sbjct: 1018 ggctgtcagctctcattgggctcctgctgt---cccttggtgcaggactcctgctggcat 962
Query: 348 gaggggtggggctccgggccctccccttggcaggtgaagcactcctcctagggctgcggc 407
|||||| ||||| ||| |||||| |||| ||||||||||| ||||||||||||||||
Sbjct: 961 taggggtagggctgcggttcctcccgttgggtggtgaagcacttctcctagggctgcggc 902
Query: 408 tgtcacgggggctcctcatagggctgcgactgccacgggggctcttcatagggctgcgac 467
| ||||| ||||| | | ||||||| | || | || |||||| | ||||||||||||
Sbjct: 901 tatcacgagggcttcccctagggctctgggtgtcgcgagggctccccttagggctgcgac 842
Query: 468 tgtctcgggggctcc 482
|||| ||||||||||
Sbjct: 841 tgtcacgggggctcc 827
Score = 87.7 bits (44), Expect = 3e-14
Identities = 77/88 (87%)
Strand = Plus / Minus
Query: 396 tagggctgcggctgtcacgggggctcctcatagggctgcgactgccacgggggctcttca 455
|||||||||| |||||||||||||||| | |||||||||||||| |||||||||| |
Sbjct: 853 tagggctgcgactgtcacgggggctccccctagggctgcgactgtcacgggggcttcccc 794
Query: 456 tagggctgcgactgtctcgggggctcct 483
||||||| |||||||| || ||||||||
Sbjct: 793 tagggctccgactgtcacgagggctcct 766
Score = 77.8 bits (39), Expect = 3e-11
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 394 cctagggctgcggctgtcacgggggctcctcatagggctgcgactgccacgggggctctt 453
||||||||| || |||| || ||||||| | |||||||||||||| |||||||||||
Sbjct: 885 cctagggctctgggtgtcgcgagggctccccttagggctgcgactgtcacgggggctccc 826
Query: 454 catagggctgcgactgtctcgggggct 480
| |||||||||||||||| ||||||||
Sbjct: 825 cctagggctgcgactgtcacgggggct 799
Score = 61.9 bits (31), Expect = 2e-06
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 389 ctcctcctagggctgcggctgtcacgggggctcctcatagggctgcgactgccacggggg 448
|||| |||||||||||| |||||||||||||| | | ||||||| |||||| |||| |||
Sbjct: 830 ctccccctagggctgcgactgtcacgggggcttcccctagggctccgactgtcacgaggg 771
Query: 449 ctc 451
|||
Sbjct: 770 ctc 768
Score = 46.1 bits (23), Expect = 0.11
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 215 cgatggttgccattgtcttcgccgtccctggggctcgggctacgaccatttgcagctggg 274
||||| |||||||||||||| ||||||||||| ||||| || ||||| |||||||
Sbjct: 1112 cgatgattgccattgtcttcataatccctggggcttgggctccggccattggcagctgta 1053
Query: 275 ctcatgt 281
|||||||
Sbjct: 1052 ctcatgt 1046
>dbj|AK060171.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-F07, full
insert sequence
Length = 1332
Score = 97.6 bits (49), Expect = 3e-17
Identities = 159/195 (81%), Gaps = 3/195 (1%)
Strand = Plus / Minus
Query: 288 ggctgtcagccttcatcggactcctgctgttctcccttggtgcagggcttctgctgccag 347
|||||||||| |||| || |||||||||| ||||||||||||| || |||||| ||
Sbjct: 973 ggctgtcagctctcattgggctcctgctgt---cccttggtgcaggactcctgctggcat 917
Query: 348 gaggggtggggctccgggccctccccttggcaggtgaagcactcctcctagggctgcggc 407
|||||| ||||| ||| |||||| |||| ||||||||||| ||||||||||||||||
Sbjct: 916 taggggtagggctgcggttcctcccgttgggtggtgaagcacttctcctagggctgcggc 857
Query: 408 tgtcacgggggctcctcatagggctgcgactgccacgggggctcttcatagggctgcgac 467
| ||||| ||||| | | ||||||| | || | || |||||| | ||||||||||||
Sbjct: 856 tatcacgagggcttcccctagggctctgggtgtcgcgagggctccccttagggctgcgac 797
Query: 468 tgtctcgggggctcc 482
|||| ||||||||||
Sbjct: 796 tgtcacgggggctcc 782
Score = 87.7 bits (44), Expect = 3e-14
Identities = 77/88 (87%)
Strand = Plus / Minus
Query: 396 tagggctgcggctgtcacgggggctcctcatagggctgcgactgccacgggggctcttca 455
|||||||||| |||||||||||||||| | |||||||||||||| |||||||||| |
Sbjct: 808 tagggctgcgactgtcacgggggctccccctagggctgcgactgtcacgggggcttcccc 749
Query: 456 tagggctgcgactgtctcgggggctcct 483
||||||| |||||||| || ||||||||
Sbjct: 748 tagggctccgactgtcacgagggctcct 721
Score = 77.8 bits (39), Expect = 3e-11
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 394 cctagggctgcggctgtcacgggggctcctcatagggctgcgactgccacgggggctctt 453
||||||||| || |||| || ||||||| | |||||||||||||| |||||||||||
Sbjct: 840 cctagggctctgggtgtcgcgagggctccccttagggctgcgactgtcacgggggctccc 781
Query: 454 catagggctgcgactgtctcgggggct 480
| |||||||||||||||| ||||||||
Sbjct: 780 cctagggctgcgactgtcacgggggct 754
Score = 61.9 bits (31), Expect = 2e-06
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 389 ctcctcctagggctgcggctgtcacgggggctcctcatagggctgcgactgccacggggg 448
|||| |||||||||||| |||||||||||||| | | ||||||| |||||| |||| |||
Sbjct: 785 ctccccctagggctgcgactgtcacgggggcttcccctagggctccgactgtcacgaggg 726
Query: 449 ctc 451
|||
Sbjct: 725 ctc 723
Score = 46.1 bits (23), Expect = 0.11
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 215 cgatggttgccattgtcttcgccgtccctggggctcgggctacgaccatttgcagctggg 274
||||| |||||||||||||| ||||||||||| ||||| || ||||| |||||||
Sbjct: 1067 cgatgattgccattgtcttcataatccctggggcttgggctccggccattggcagctgta 1008
Query: 275 ctcatgt 281
|||||||
Sbjct: 1007 ctcatgt 1001
>emb|BX004790.9| Zebrafish DNA sequence from clone CH211-215J7 in linkage group 7,
complete sequence
Length = 209666
Score = 40.1 bits (20), Expect = 6.6
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 69 tgctcaagattttggagagttttg 92
||||||||| ||||||||||||||
Sbjct: 26589 tgctcaagaatttggagagttttg 26612
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,706,421
Number of Sequences: 3902068
Number of extensions: 3706421
Number of successful extensions: 65789
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65696
Number of HSP's gapped (non-prelim): 83
length of query: 486
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 464
effective length of database: 17,147,199,772
effective search space: 7956300694208
effective search space used: 7956300694208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)