ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart13d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470697.1| Oryza sativa (japonica cultivar-group), mRNA 80 7e-12
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 80 7e-12
3gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genom... 80 7e-12
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 80 7e-12
5dbj|AK120709.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 7e-12
6dbj|AK110542.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 7e-12
7gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 1.6
8gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 6.2
9emb|AL591788.1|SME591788 Sinorhizobium meliloti 1021 complete ch... 40 6.2
10gb|AC122891.4| Mus musculus BAC clone RP23-66J6 from 12, complet... 40 6.2
11emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.2
12emb|CR293530.22| Zebrafish DNA sequence from clone CH211-129C13 ... 40 6.2
13emb|AL954696.17| Zebrafish DNA sequence from clone CH211-234K4, ... 40 6.2
14gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 6.2
15gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.2
16gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 6.2
17emb|AL691489.20| Mouse DNA sequence from clone RP23-176N9 on chr... 40 6.2 
>ref|XM_470697.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1437

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                        
Query: 356  ccgctcccgttgaagctccccggcgggccgaacgccgacggcgg 399
            ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1307 ccgctcccgttgaagctccccggcgggccgaaccccgacggcgg 1264
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                            
Query: 356      ccgctcccgttgaagctccccggcgggccgaacgccgacggcgg 399
                ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 14605561 ccgctcccgttgaagctccccggcgggccgaaccccgacggcgg 14605518
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>gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genomic sequence, complete
             sequence
          Length = 147130

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                         
Query: 356   ccgctcccgttgaagctccccggcgggccgaacgccgacggcgg 399
             ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 52150 ccgctcccgttgaagctccccggcgggccgaaccccgacggcgg 52193
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                            
Query: 356      ccgctcccgttgaagctccccggcgggccgaacgccgacggcgg 399
                ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 14600536 ccgctcccgttgaagctccccggcgggccgaaccccgacggcgg 14600493
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>dbj|AK120709.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001F15, full
            insert sequence
          Length = 1976

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                        
Query: 356  ccgctcccgttgaagctccccggcgggccgaacgccgacggcgg 399
            ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1563 ccgctcccgttgaagctccccggcgggccgaaccccgacggcgg 1520
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>dbj|AK110542.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-B04, full
            insert sequence
          Length = 1467

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                        
Query: 356  ccgctcccgttgaagctccccggcgggccgaacgccgacggcgg 399
            ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1162 ccgctcccgttgaagctccccggcgggccgaaccccgacggcgg 1119
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 255    cggcaagaagaacggcgggca 275
              |||||||||||||||||||||
Sbjct: 608912 cggcaagaagaacggcgggca 608932
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 417     ggccgaagccgcccgcggga 436
               ||||||||||||||||||||
Sbjct: 1564538 ggccgaagccgcccgcggga 1564557
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>emb|AL591788.1|SME591788 Sinorhizobium meliloti 1021 complete chromosome; segment 7/12
          Length = 306250

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 371    ctccccggcgggccgaacgc 390
              ||||||||||||||||||||
Sbjct: 153382 ctccccggcgggccgaacgc 153401
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>gb|AC122891.4| Mus musculus BAC clone RP23-66J6 from 12, complete sequence
          Length = 205784

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   cacactcacataatttacat 231
             ||||||||||||||||||||
Sbjct: 98832 cacactcacataatttacat 98851
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 417     ggccgaagccgcccgcggga 436
               ||||||||||||||||||||
Sbjct: 2899284 ggccgaagccgcccgcggga 2899303
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>emb|CR293530.22| Zebrafish DNA sequence from clone CH211-129C13 in linkage group 1,
             complete sequence
          Length = 179015

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   ctcacataatttacatcaga 235
             ||||||||||||||||||||
Sbjct: 35340 ctcacataatttacatcaga 35359
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>emb|AL954696.17| Zebrafish DNA sequence from clone CH211-234K4, complete sequence
          Length = 149858

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 202    aatccaaattcacactcaca 221
              ||||||||||||||||||||
Sbjct: 120281 aatccaaattcacactcaca 120262
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 417    ggccgaagccgcccgcggga 436
              ||||||||||||||||||||
Sbjct: 338894 ggccgaagccgcccgcggga 338875
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 410    gacggcgggccgaagccgcc 429
              ||||||||||||||||||||
Sbjct: 446113 gacggcgggccgaagccgcc 446094
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 417     ggccgaagccgcccgcggga 436
               ||||||||||||||||||||
Sbjct: 2724866 ggccgaagccgcccgcggga 2724885
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>emb|AL691489.20| Mouse DNA sequence from clone RP23-176N9 on chromosome 2, complete
             sequence
          Length = 194864

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   agggcggaggcagccaaaga 297
             ||||||||||||||||||||
Sbjct: 63544 agggcggaggcagccaaaga 63563


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,803,501
Number of Sequences: 3902068
Number of extensions: 2803501
Number of successful extensions: 68176
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67696
Number of HSP's gapped (non-prelim): 480
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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