>ARNT_WIGBR (Q8D339) Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose|
           arabinosyl transferase (EC 2.-.-.-) (Undecaprenyl
           phosphate-alpha-L-Ara4N transferase)
           (4-amino-4-deoxy-L-arabinose lipid A transferase)
          Length = 562

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = -3

Query: 179 KTMYWYFQPLVIGCCLPWKN--KDT*SVFWNFTKESMHVESCILKMLIL 39
           K+ +WY+ P+ I  CLPW      T ++ WN T+++  +E  +L  +I+
Sbjct: 265 KSPFWYYFPIFIIGCLPWSGFLFSTLNLAWN-TRKNKKIEFYLLLWIIV 312

>PALH_KLULA (Q6CXK7) pH-response regulator protein palH/RIM21|
          Length = 519

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 43  INIFRIQLSTCMLSLVKFQKTLYVSLFFQGRQQPITKGWKYQYMVFPGFYI 195
           + +FRI LSTC  S++ F      SL F+GR   +T    +   + P F+I
Sbjct: 249 VYLFRIALSTCYASVICFHVLTKKSLCFRGRMIFLTLLTIFTVFLHPTFFI 299

>AERA_AERSO (Q06304) Aerolysin precursor (Hemolysin)|
          Length = 488

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +1

Query: 169 YMVFPGFYIEHKTGIHQVRNNHSIFPRCNSDYDVADQFTLFVDSHRVL-NNNGYILGLRC 345
           Y + P  Y+ H  G   V  NHS  P    D DV    T   D   +  NN+G   G RC
Sbjct: 135 YFIKPVSYLAHYLGYAWVGGNHS--PYVGEDMDV----TRVGDGWLIKGNNDGGCSGYRC 188

Query: 346 GNRS 357
           G +S
Sbjct: 189 GEKS 192

>AERA_AERSA (Q08676) Aerolysin precursor (Hemolysin-3)|
          Length = 489

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +1

Query: 169 YMVFPGFYIEHKTGIHQVRNNHSIFPRCNSDYDVADQFTLFVDSHRVL-NNNGYILGLRC 345
           Y + P  Y+ H  G   V  NHS  P    D DV    T   D   +  NN+G   G RC
Sbjct: 136 YFIKPVSYLAHYLGYAWVGGNHS--PYVGEDMDV----TRVGDGWLIKGNNDGGCSGYRC 189

Query: 346 GNRS 357
           G +S
Sbjct: 190 GEKS 193

>ALG6_SCHPO (O43053) Probable dolichyl pyrophosphate Man9GlcNAc2|
           alpha-1,3-glucosyltransferase (EC 2.4.1.-)
           (Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl
           glucosyltransferase)
          Length = 506

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 17/66 (25%), Positives = 34/66 (51%)
 Frame = +1

Query: 49  IFRIQLSTCMLSLVKFQKTLYVSLFFQGRQQPITKGWKYQYMVFPGFYIEHKTGIHQVRN 228
           IF   L TC+   ++F + + +S         +T  + +  ++FP  Y+++KT + Q+  
Sbjct: 230 IFFYLLGTCVKPKIRFSRFILLS---------VTVVFTFSLILFPWIYMDYKTLLPQIL- 279

Query: 229 NHSIFP 246
            H +FP
Sbjct: 280 -HRVFP 284

>F16P1_PEA (P46275) Fructose-1,6-bisphosphatase, chloroplast precursor (EC|
           3.1.3.11) (D-fructose-1,6-bisphosphate
           1-phosphohydrolase) (FBPase)
          Length = 407

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = -2

Query: 249 PGKN*MIVSHLMYTCFVFYIKTWKDHVLVF---PAFGDWLLPALEEQRHIKCFLEFHQGK 79
           PG N +   + MY+  V ++ T    V VF   P +G+++L   +E   I    E +   
Sbjct: 230 PGSNLLAAGYCMYSSSVAFVLTIGKGVFVFTLDPLYGEFVL--TQENLQIPKSGEIYSFN 287

Query: 78  HARRKLYSEDVDSFV 34
               KL+ E++  ++
Sbjct: 288 EGNYKLWDENLKKYI 302

>ALMS1_MOUSE (Q8K4E0) Alstrom syndrome protein 1 homolog|
          Length = 3251

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 217  QVRNNHSIFPRCNSDYDVADQFTLFVDSHR 306
            ++R +HS FP+C  DY VAD    F D  +
Sbjct: 2078 EIREDHSFFPKC-QDYIVADPSPDFPDQQQ 2106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,011,988
Number of Sequences: 219361
Number of extensions: 1516435
Number of successful extensions: 3861
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3861
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)