Clone Name | rbart13c11 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009620.1| Triticum aestivum clone wre1n.pk0126.e11:fis, full insert mRNA sequence Length = 862 Score = 642 bits (324), Expect = 0.0 Identities = 447/490 (91%), Gaps = 21/490 (4%) Strand = Plus / Minus Query: 1 gcccatagtgaagtctgatagaactcatatacagacaaaagaatcaacatcttcagaata 60 ||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 807 gcccagagtgaagtctgatagaactcatatacagacaaaagaatcaacatatccagaata 748 Query: 61 cagctttcgacgtgcatgctttccttggtgaaattccaaaaaa------cactttatgtg 114 ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 747 cagctttcgacatgcaagctttccttggtgaaattccaaaaaaaaaaaacactttatgtg 688 Query: 115 tctttgttcttccagggcaggcagcaaccaatcaccaaaggctggaaataccagtacatg 174 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 687 tctttgttcttccaggtcaggcagcaaccaatcaccaaaggctggaaataccagtacatg 628 Query: 175 gtctttccaggtttttatatagaacacaaaacaggtatacatcaggtgagaaacaatcat 234 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | | Sbjct: 627 gtctttccaggttcttatatagaacacaaaacaggtatacatcaggtgagaaacaaccct 568 Query: 235 tcaatttttcccaggtgtaattccgactacgacgttgctgaccagtttacccttttcgtc 294 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 567 tcaatttttcccaggtgtaattccaactacgacgttgctgaccagtttacccttttcgtc 508 Query: 295 gacagtcatagggttctcaacaacaacggttacattctggggctgagatgtgggaacaga 354 || |||||||||||||||||||| ||||||||||||||||| |||| |||||||||||| Sbjct: 507 aactgtcatagggttctcaacaacgacggttacattctggggttgaggtgtgggaacaga 448 Query: 355 agctgatgaagcattatatgcagattcatttgatgtaggccttggacatggtgcaggtga 414 ||||||||| ||||||||||||||||||||||||||||| |||||| || |||| Sbjct: 447 agctgatgaggcattatatgcagattcatttgatgtagg------acatggcgcgggtgg 394 Query: 415 catggtgtttattccagtat---------tcgtgataaaatcgcagatggcacatttgac 465 |||||| ||||||||||||| | |||||| |||||||||||||||||||||| Sbjct: 393 catggtatttattccagtatttgtgatatttgtgatataatcgcagatggcacatttgac 334 Query: 466 agaaggtgct 475 |||||||||| Sbjct: 333 agaaggtgct 324
>dbj|AK111569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071E13, full insert sequence Length = 1089 Score = 129 bits (65), Expect = 9e-27 Identities = 98/109 (89%) Strand = Plus / Minus Query: 241 tttcccaggtgtaattccgactacgacgttgctgaccagtttacccttttcgtcgacagt 300 |||||||| ||||| ||| ||||| || ||||| ||||||||||||||||| || ||||| Sbjct: 780 tttcccagttgtaactccaactacaacattgctaaccagtttacccttttcatcaacagt 721 Query: 301 catagggttctcaacaacaacggttacattctggggctgagatgtggga 349 |||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 720 catagggttctcgacaacaacggttacattctggggtcgagatgtggga 672 Score = 67.9 bits (34), Expect = 3e-08 Identities = 91/110 (82%) Strand = Plus / Minus Query: 365 gcattatatgcagattcatttgatgtaggccttggacatggtgcaggtgacatggtgttt 424 |||||||||| |||| || ||||||||||| ||||| |||| | |||| || || || Sbjct: 626 gcattatatgaagatccacttgatgtaggcattggagatggcgtgggtgccacagtattc 567 Query: 425 attccagtattcgtgataaaatcgcagatggcacatttgacagaaggtgc 474 ||||| || || |||||| ||| ||| ||||||||||||||||||||||| Sbjct: 566 attccggtgtttgtgatataatggcatatggcacatttgacagaaggtgc 517 Score = 52.0 bits (26), Expect = 0.002 Identities = 77/94 (81%) Strand = Plus / Minus Query: 12 agtctgatagaactcatatacagacaaaagaatcaacatcttcagaatacagctttcgac 71 ||||| ||||| |||||||||| | ||||||||||||| | || |||||| |||| | | Sbjct: 992 agtctaatagagctcatatacaaagaaaagaatcaacagatacaaaatacaactttaggc 933 Query: 72 gtgcatgctttccttggtgaaattccaaaaaaca 105 || ||| |||||||| | | ||||||||||||| Sbjct: 932 gttcatactttcctttgcaagattccaaaaaaca 899
>gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic sequence, complete sequence Length = 175704 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Minus Query: 275 accagtttacccttttcgtcgacagtcatagggttctcaacaacaacggttacattctgg 334 ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| Sbjct: 173435 accagtttacccttttcatcaacagtcatagggttctcgacaacaacggttacattctgg 173376 Query: 335 ggctgagatgtggg 348 || |||||||||| Sbjct: 173375 ggtcgagatgtggg 173362 Score = 52.0 bits (26), Expect = 0.002 Identities = 77/94 (81%) Strand = Plus / Minus Query: 12 agtctgatagaactcatatacagacaaaagaatcaacatcttcagaatacagctttcgac 71 ||||| ||||| |||||||||| | ||||||||||||| | || |||||| |||| | | Sbjct: 173782 agtctaatagagctcatatacaaagaaaagaatcaacagatacaaaatacaactttaggc 173723 Query: 72 gtgcatgctttccttggtgaaattccaaaaaaca 105 || ||| |||||||| | | ||||||||||||| Sbjct: 173722 gttcatactttcctttgcaagattccaaaaaaca 173689 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 437 gtgataaaatcgcagatggcacatttgacagaaggtgc 474 |||||| ||| ||| ||||||||||||||||||||||| Sbjct: 173055 gtgatataatggcatatggcacatttgacagaaggtgc 173018 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 365 gcattatatgcagattcatttgatgtaggccttggacatgg 405 |||||||||| |||| || ||||||||||| ||||| |||| Sbjct: 173229 gcattatatgaagatccacttgatgtaggcattggagatgg 173189
>gb|AC128646.5| Oryza sativa chromosome 3 BAC OSJNBb0029I19 genomic sequence, complete sequence Length = 120254 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Minus Query: 275 accagtttacccttttcgtcgacagtcatagggttctcaacaacaacggttacattctgg 334 ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| Sbjct: 11532 accagtttacccttttcatcaacagtcatagggttctcgacaacaacggttacattctgg 11473 Query: 335 ggctgagatgtggg 348 || |||||||||| Sbjct: 11472 ggtcgagatgtggg 11459 Score = 52.0 bits (26), Expect = 0.002 Identities = 77/94 (81%) Strand = Plus / Minus Query: 12 agtctgatagaactcatatacagacaaaagaatcaacatcttcagaatacagctttcgac 71 ||||| ||||| |||||||||| | ||||||||||||| | || |||||| |||| | | Sbjct: 11879 agtctaatagagctcatatacaaagaaaagaatcaacagatacaaaatacaactttaggc 11820 Query: 72 gtgcatgctttccttggtgaaattccaaaaaaca 105 || ||| |||||||| | | ||||||||||||| Sbjct: 11819 gttcatactttcctttgcaagattccaaaaaaca 11786 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 437 gtgataaaatcgcagatggcacatttgacagaaggtgc 474 |||||| ||| ||| ||||||||||||||||||||||| Sbjct: 11152 gtgatataatggcatatggcacatttgacagaaggtgc 11115 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 365 gcattatatgcagattcatttgatgtaggccttggacatgg 405 |||||||||| |||| || ||||||||||| ||||| |||| Sbjct: 11326 gcattatatgaagatccacttgatgtaggcattggagatgg 11286
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 275 accagtttacccttttcgtcgacagtcatagggttctcaacaacaacggttacattctgg 334 ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| Sbjct: 24462425 accagtttacccttttcatcaacagtcatagggttctcgacaacaacggttacattctgg 24462484 Query: 335 ggctgagatgtggg 348 || |||||||||| Sbjct: 24462485 ggtcgagatgtggg 24462498 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 437 gtgataaaatcgcagatggcacatttgacagaaggtgc 474 |||||| ||| ||| ||||||||||||||||||||||| Sbjct: 24462805 gtgatataatggcatatggcacatttgacagaaggtgc 24462842 Score = 52.0 bits (26), Expect = 0.002 Identities = 77/94 (81%) Strand = Plus / Plus Query: 12 agtctgatagaactcatatacagacaaaagaatcaacatcttcagaatacagctttcgac 71 ||||| ||||| |||||||||| | ||||||||||||| | || |||||| |||| | | Sbjct: 24462078 agtctaatagagctcatatacaaagaaaagaatcaacagatacaaaatacaactttaggc 24462137 Query: 72 gtgcatgctttccttggtgaaattccaaaaaaca 105 || ||| |||||||| | | ||||||||||||| Sbjct: 24462138 gttcatactttcctttgcaagattccaaaaaaca 24462171 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 365 gcattatatgcagattcatttgatgtaggccttggacatgg 405 |||||||||| |||| || ||||||||||| ||||| |||| Sbjct: 24462631 gcattatatgaagatccacttgatgtaggcattggagatgg 24462671
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 107 bits (54), Expect = 3e-20 Identities = 69/74 (93%) Strand = Plus / Plus Query: 275 accagtttacccttttcgtcgacagtcatagggttctcaacaacaacggttacattctgg 334 ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| Sbjct: 24379894 accagtttacccttttcatcaacagtcatagggttctcgacaacaacggttacattctgg 24379953 Query: 335 ggctgagatgtggg 348 || |||||||||| Sbjct: 24379954 ggtcgagatgtggg 24379967 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 437 gtgataaaatcgcagatggcacatttgacagaaggtgc 474 |||||| ||| ||| ||||||||||||||||||||||| Sbjct: 24380274 gtgatataatggcatatggcacatttgacagaaggtgc 24380311 Score = 52.0 bits (26), Expect = 0.002 Identities = 77/94 (81%) Strand = Plus / Plus Query: 12 agtctgatagaactcatatacagacaaaagaatcaacatcttcagaatacagctttcgac 71 ||||| ||||| |||||||||| | ||||||||||||| | || |||||| |||| | | Sbjct: 24379547 agtctaatagagctcatatacaaagaaaagaatcaacagatacaaaatacaactttaggc 24379606 Query: 72 gtgcatgctttccttggtgaaattccaaaaaaca 105 || ||| |||||||| | | ||||||||||||| Sbjct: 24379607 gttcatactttcctttgcaagattccaaaaaaca 24379640 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 365 gcattatatgcagattcatttgatgtaggccttggacatgg 405 |||||||||| |||| || ||||||||||| ||||| |||| Sbjct: 24380100 gcattatatgaagatccacttgatgtaggcattggagatgg 24380140
>gb|AY112561.1| Zea mays CL39582_1 mRNA sequence Length = 749 Score = 81.8 bits (41), Expect = 2e-12 Identities = 80/93 (86%) Strand = Plus / Plus Query: 241 tttcccaggtgtaattccgactacgacgttgctgaccagtttacccttttcgtcgacagt 300 |||||||| ||| | ||| ||||| ||| ||||||| ||||| ||||| || || || || Sbjct: 316 tttcccagctgtgactccaactacaacgctgctgacaagttttcccttgtcatcaactgt 375 Query: 301 catagggttctcaacaacaacggttacattctg 333 ||||||||||||||||||||| ||||||||||| Sbjct: 376 catagggttctcaacaacaacagttacattctg 408
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 428 ccagtattcgtgataaaatcgcagatggcacatttgacagaaggtgct 475 |||||||| || ||||||| |||||| ||||| ||||||||||||||| Sbjct: 25849757 ccagtatttgtaataaaattgcagatagcacacttgacagaaggtgct 25849804
>dbj|AK111837.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139G05, full insert sequence Length = 1182 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 428 ccagtattcgtgataaaatcgcagatggcacatttgacagaaggtgct 475 |||||||| || ||||||| |||||| ||||| ||||||||||||||| Sbjct: 553 ccagtatttgtaataaaattgcagatagcacacttgacagaaggtgct 506 Score = 44.1 bits (22), Expect = 0.41 Identities = 61/74 (82%) Strand = Plus / Minus Query: 260 actacgacgttgctgaccagtttacccttttcgtcgacagtcatagggttctcaacaaca 319 ||||| |||||||| |||| || |||||| | || || |||||||| || ||||||||| Sbjct: 706 actacaacgttgctcaccaactttccctttgcatctaccgtcataggattttcaacaaca 647 Query: 320 acggttacattctg 333 || || |||||||| Sbjct: 646 acagtaacattctg 633
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 428 ccagtattcgtgataaaatcgcagatggcacatttgacagaaggtgct 475 |||||||| || ||||||| |||||| ||||| ||||||||||||||| Sbjct: 25777933 ccagtatttgtaataaaattgcagatagcacacttgacagaaggtgct 25777980
>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137492 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 428 ccagtattcgtgataaaatcgcagatggcacatttgacagaaggtgct 475 |||||||| || ||||||| |||||| ||||| ||||||||||||||| Sbjct: 71208 ccagtatttgtaataaaattgcagatagcacacttgacagaaggtgct 71255
>gb|AF475127.1| Triticum aestivum 18S subunit ribosomal protein mRNA, partial cds Length = 465 Score = 50.1 bits (25), Expect = 0.007 Identities = 64/77 (83%) Strand = Plus / Minus Query: 257 ccgactacgacgttgctgaccagtttacccttttcgtcgacagtcatagggttctcaaca 316 ||||||||||||||||| |||| ||| ||||| || || || ||||| ||||| || || Sbjct: 440 ccgactacgacgttgctcaccaatttccccttgtcatctactgtcattgggttttcgacg 381 Query: 317 acaacggttacattctg 333 || || ||||||||||| Sbjct: 380 accaccgttacattctg 364 Score = 44.1 bits (22), Expect = 0.41 Identities = 49/58 (84%) Strand = Plus / Minus Query: 418 ggtgtttattccagtattcgtgataaaatcgcagatggcacatttgacagaaggtgct 475 |||||| |||||| | || || ||||||| |||||| ||||||||||| |||| |||| Sbjct: 279 ggtgttcattccaatgtttgtaataaaattgcagatagcacatttgaccgaagatgct 222
>gb|AC183962.3| Pan troglodytes BAC clone CH251-711F5 from chromosome 6, complete sequence Length = 196547 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 185 gtttttatatagaacacaaaa 205 ||||||||||||||||||||| Sbjct: 148335 gtttttatatagaacacaaaa 148315
>gb|BC066136.1| Mus musculus zinc finger protein 512, mRNA (cDNA clone IMAGE:30107988), containing frame-shift errors Length = 3149 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 ctgatagaactcatatacaga 35 ||||||||||||||||||||| Sbjct: 2457 ctgatagaactcatatacaga 2437
>gb|BC021520.1| Mus musculus zinc finger protein 512, mRNA (cDNA clone IMAGE:5352539), containing frame-shift errors Length = 3145 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 ctgatagaactcatatacaga 35 ||||||||||||||||||||| Sbjct: 2498 ctgatagaactcatatacaga 2478
>gb|AC113276.9| Mus musculus chromosome 5, clone RP23-383E21, complete sequence Length = 245002 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 ctgatagaactcatatacaga 35 ||||||||||||||||||||| Sbjct: 59991 ctgatagaactcatatacaga 60011
>emb|AL590227.13| Human DNA sequence from clone RP11-343D24 on chromosome 6 Contains a glyceraldehyde-3-phosphate dehydrogenase (GAPD) pseudogene and a novel gene, complete sequence Length = 138027 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 185 gtttttatatagaacacaaaa 205 ||||||||||||||||||||| Sbjct: 52250 gtttttatatagaacacaaaa 52230
>dbj|AK146353.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library, clone:I730060D15 product:zinc finger protein 512, full insert sequence Length = 3259 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 ctgatagaactcatatacaga 35 ||||||||||||||||||||| Sbjct: 2668 ctgatagaactcatatacaga 2648
>dbj|AK149921.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530105P08 product:zinc finger protein 512, full insert sequence Length = 3242 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 ctgatagaactcatatacaga 35 ||||||||||||||||||||| Sbjct: 2651 ctgatagaactcatatacaga 2631
>dbj|AK154918.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630111F22 product:zinc finger protein 512, full insert sequence Length = 3243 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 ctgatagaactcatatacaga 35 ||||||||||||||||||||| Sbjct: 2651 ctgatagaactcatatacaga 2631
>ref|NM_172993.1| Mus musculus zinc finger protein 512 (Zfp512), mRNA Length = 3240 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 ctgatagaactcatatacaga 35 ||||||||||||||||||||| Sbjct: 2651 ctgatagaactcatatacaga 2631
>dbj|AK010855.1| Mus musculus 13 days embryo liver cDNA, RIKEN full-length enriched library, clone:2500002M11 product:RIKEN cDNA 2500002M11 gene, full insert sequence Length = 1050 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 ctgatagaactcatatacaga 35 ||||||||||||||||||||| Sbjct: 458 ctgatagaactcatatacaga 438
>dbj|AK084205.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230008H22 product:hypothetical Zinc finger, C2H2 type containing protein, full insert sequence Length = 3240 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 ctgatagaactcatatacaga 35 ||||||||||||||||||||| Sbjct: 2651 ctgatagaactcatatacaga 2631
>gb|AC147332.2| Pan troglodytes BAC clone RP43-6C11 from chromosome 7, complete sequence Length = 23935 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 caatttttcccaggtgtaatt 256 ||||||||||||||||||||| Sbjct: 19530 caatttttcccaggtgtaatt 19510
>dbj|AK173267.1| Mus musculus mRNA for mKIAA1805 protein Length = 3270 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 ctgatagaactcatatacaga 35 ||||||||||||||||||||| Sbjct: 2679 ctgatagaactcatatacaga 2659
>emb|AL713978.9| Mouse DNA sequence from clone RP23-159H8 on chromosome X, complete sequence Length = 183455 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 atatacagacaaaagaatcaa 47 ||||||||||||||||||||| Sbjct: 116319 atatacagacaaaagaatcaa 116299
>dbj|AP002068.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T8O3 Length = 54386 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 ttggtgaaattccaaaaaaca 105 ||||||||||||||||||||| Sbjct: 3242 ttggtgaaattccaaaaaaca 3222
>gb|BC089160.1| Mus musculus zinc finger protein 512, mRNA (cDNA clone MGC:99957 IMAGE:5390706), complete cds Length = 3250 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 ctgatagaactcatatacaga 35 ||||||||||||||||||||| Sbjct: 2626 ctgatagaactcatatacaga 2606
>ref|NM_124966.1| Arabidopsis thaliana unknown protein AT5G55840 mRNA, complete cds Length = 3825 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 cacaaaacaggtatacatca 218 |||||||||||||||||||| Sbjct: 2073 cacaaaacaggtatacatca 2054
>gb|AC159273.4| Mus musculus BAC clone RP23-391G8 from chromosome 7, complete sequence Length = 227709 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 acatggtgcaggtgacatgg 419 |||||||||||||||||||| Sbjct: 54918 acatggtgcaggtgacatgg 54937
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 aagctgatgaagcattatat 373 |||||||||||||||||||| Sbjct: 2375354 aagctgatgaagcattatat 2375335
>gb|AC112739.5| Rattus norvegicus 7 BAC CH230-108A12 (Children's Hospital Oakland Research Institute) complete sequence Length = 234420 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 gatgtgggaacagaagctga 360 |||||||||||||||||||| Sbjct: 111220 gatgtgggaacagaagctga 111239
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 cttccagggcaggcagcaac 142 |||||||||||||||||||| Sbjct: 2918227 cttccagggcaggcagcaac 2918208
>gb|AY809924.1| Schistosoma japonicum SJCHGC02321 protein mRNA, partial cds Length = 1298 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 gaaattccaaaaaacacttt 109 |||||||||||||||||||| Sbjct: 1100 gaaattccaaaaaacacttt 1081
>gb|AC093662.4| Homo sapiens BAC clone RP11-477A19 from 7, complete sequence Length = 48279 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 tttttatatagaacacaaaa 205 |||||||||||||||||||| Sbjct: 42002 tttttatatagaacacaaaa 42021
>gb|AC147133.2| Pan troglodytes BAC clone CH251-372A19 from Y, complete sequence Length = 192074 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 ggctgagatgtgggaacaga 354 |||||||||||||||||||| Sbjct: 166669 ggctgagatgtgggaacaga 166650
>gb|AC009540.6|ATAC009540 Arabidopsis thaliana chromosome III BAC F20H23 genomic sequence, complete sequence Length = 101410 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 gtgtctttgttcttccaggg 131 |||||||||||||||||||| Sbjct: 7725 gtgtctttgttcttccaggg 7744
>gb|AC011698.6|ATAC011698 Arabidopsis thaliana chromosome III BAC T11I18 genomic sequence, complete sequence Length = 63654 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 gtgtctttgttcttccaggg 131 |||||||||||||||||||| Sbjct: 5947 gtgtctttgttcttccaggg 5928
>ref|XM_810237.1| Trypanosoma cruzi strain CL Brener acyl-CoA dehydrogenase (Tc00.1047053509153.120) partial mRNA Length = 1206 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 tttttcccaggtgtaattcc 258 |||||||||||||||||||| Sbjct: 653 tttttcccaggtgtaattcc 634
>ref|XM_814523.1| Trypanosoma cruzi strain CL Brener acyl-CoA dehydrogenase (Tc00.1047053510303.290) partial mRNA Length = 1206 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 tttttcccaggtgtaattcc 258 |||||||||||||||||||| Sbjct: 653 tttttcccaggtgtaattcc 634
>gb|AC044798.7| Homo sapiens chromosome 16 clone RP11-22D3, complete sequence Length = 165651 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 tgagatgtgggaacagaagc 357 |||||||||||||||||||| Sbjct: 47008 tgagatgtgggaacagaagc 47027
>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence Length = 3281944 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 atcgcagatggcacatttga 464 |||||||||||||||||||| Sbjct: 2589014 atcgcagatggcacatttga 2588995
>emb|AL512307.12| Human DNA sequence from clone RP11-285B6 on chromosome 1 Contains part of the RGS7 gene for regulator of G-protein signalling 7, complete sequence Length = 182323 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 tttatgtgtctttgttcttc 126 |||||||||||||||||||| Sbjct: 150383 tttatgtgtctttgttcttc 150402
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 aagctgatgaagcattatat 373 |||||||||||||||||||| Sbjct: 2318924 aagctgatgaagcattatat 2318905
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 aagctgatgaagcattatat 373 |||||||||||||||||||| Sbjct: 2345300 aagctgatgaagcattatat 2345281
>emb|BX927156.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 9/10 Length = 349115 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 gcaggtgacatggtgtttat 426 |||||||||||||||||||| Sbjct: 310862 gcaggtgacatggtgtttat 310881
>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome Length = 2225959 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gctgagatgtgggaacagaa 355 |||||||||||||||||||| Sbjct: 1439210 gctgagatgtgggaacagaa 1439191
>dbj|BS000642.2| Pan troglodytes chromosome Y clone: PTB-307G08, complete sequence Length = 162472 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 ggctgagatgtgggaacaga 354 |||||||||||||||||||| Sbjct: 36056 ggctgagatgtgggaacaga 36037
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 ggctgagatgtgggaacaga 354 |||||||||||||||||||| Sbjct: 18871350 ggctgagatgtgggaacaga 18871369
>gb|AC159216.2| Pan troglodytes BAC clone CH251-477A18 from chromosome unknown, complete sequence Length = 206361 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 355 agctgatgaagcattatatgcaga 378 |||||||||||||||| ||||||| Sbjct: 189599 agctgatgaagcattaaatgcaga 189622
>gb|AC016817.6| Homo sapiens chromosome 10 clone RP11-13G8, complete sequence Length = 159981 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 355 agctgatgaagcattatatgcaga 378 |||||||||||||||| ||||||| Sbjct: 61304 agctgatgaagcattaaatgcaga 61281
>gb|AC159034.2| Pan troglodytes BAC clone CH251-335D18 from chromosome unknown, complete sequence Length = 170276 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 355 agctgatgaagcattatatgcaga 378 |||||||||||||||| ||||||| Sbjct: 110069 agctgatgaagcattaaatgcaga 110046
>gb|AC093469.11| Mus musculus chromosome 7, clone RP23-21I4, complete sequence Length = 215022 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 acatggtgcaggtgacatgg 419 |||||||||||||||||||| Sbjct: 211820 acatggtgcaggtgacatgg 211839
>gb|AC007614.7| Homo sapiens chromosome 16 clone RP11-491F9, complete sequence Length = 192347 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 tgagatgtgggaacagaagc 357 |||||||||||||||||||| Sbjct: 187937 tgagatgtgggaacagaagc 187956
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 gcaggtgacatggtgtttat 426 |||||||||||||||||||| Sbjct: 3131142 gcaggtgacatggtgtttat 3131161
>gb|AC146450.5| Pan troglodytes BAC clone clone CH251-552K12 from y, complete sequence Length = 172072 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 ggctgagatgtgggaacaga 354 |||||||||||||||||||| Sbjct: 82150 ggctgagatgtgggaacaga 82131
>emb|BX000984.7| Zebrafish DNA sequence from clone CH211-157C7, complete sequence Length = 160029 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 tttttatatagaacacaaaa 205 |||||||||||||||||||| Sbjct: 110802 tttttatatagaacacaaaa 110821
>dbj|AB018120.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWJ3 Length = 42356 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 cacaaaacaggtatacatca 218 |||||||||||||||||||| Sbjct: 5353 cacaaaacaggtatacatca 5334
>gb|AC006371.2|AC006371 Homo sapiens BAC clone RP11-304C24 from Y, complete sequence Length = 202354 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 ggctgagatgtgggaacaga 354 |||||||||||||||||||| Sbjct: 60083 ggctgagatgtgggaacaga 60102
>gb|AC006561.8|AC006561 Homo sapiens 12 PAC RPCI3-474D1 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 60801 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 tttatatagaacacaaaacaggta 211 |||||||| ||||||||||||||| Sbjct: 29208 tttatatataacacaaaacaggta 29231
>gb|AY449458.1| Oikopleura dioica clone BACOIKO002 4xj18, complete sequence Length = 188193 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 269 ttgctgaccagtttacccttttcgtcga 296 ||||||||||||||||| ||||| |||| Sbjct: 175814 ttgctgaccagtttaccgttttcctcga 175787
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aaaagaatcaacatcttcag 56 |||||||||||||||||||| Sbjct: 1352317 aaaagaatcaacatcttcag 1352298
>gb|AC087587.14| Homo sapiens 12 BAC CTC-465D4 (CalTech Human BAC Library C) complete sequence Length = 198842 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 361 tgaagcattatatgcagattcatt 384 ||||||| |||||||||||||||| Sbjct: 147126 tgaagcaatatatgcagattcatt 147103 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,171,962 Number of Sequences: 3902068 Number of extensions: 5171962 Number of successful extensions: 138550 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 138000 Number of HSP's gapped (non-prelim): 549 length of query: 475 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 453 effective length of database: 17,147,199,772 effective search space: 7767681496716 effective search space used: 7767681496716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)