>RLA0_ORYSA (P41095) 60S acidic ribosomal protein P0|
          Length = 318

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 45/80 (56%), Positives = 49/80 (61%)
 Frame = -1

Query: 393 APHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXXXXXXXXXXX 214
           APHMFLN YKNVLAVA+ET+YSY HADKIKEYLKDPSKFAV                   
Sbjct: 239 APHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEE 298

Query: 213 XXXXXXXXXSDGEMGFSLFD 154
                    SDG++G SLFD
Sbjct: 299 EKKEEPEEESDGDLGMSLFD 318

>RLA0_MAIZE (O24573) 60S acidic ribosomal protein P0|
          Length = 318

 Score = 87.8 bits (216), Expect = 6e-18
 Identities = 47/80 (58%), Positives = 49/80 (61%)
 Frame = -1

Query: 390 PHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXXXXXXXXXXXX 211
           PHMF+N YKNVLAVA+ETDYSY HADKIKEYLKDPSKFAV                    
Sbjct: 240 PHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKFAV-AAPVAAGDSGASAAPKEEE 298

Query: 210 XXXXXXXXSDGEMGFSLFDD 151
                   SD EMGFSLFDD
Sbjct: 299 KAAEPEEESDEEMGFSLFDD 318

>RLA0_SOYBN (P50346) 60S acidic ribosomal protein P0|
          Length = 320

 Score = 83.6 bits (205), Expect = 1e-16
 Identities = 44/81 (54%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
 Frame = -1

Query: 393 APHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXX-XXXXXXXXXXXXX 217
           APHMF+NAYKNVLAVA+ETDYS+  ADK+KEYLKDPSKFAV                   
Sbjct: 240 APHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKFAVAAVAAPAAASGAPAAAAKE 299

Query: 216 XXXXXXXXXXSDGEMGFSLFD 154
                     SD +MGFSLFD
Sbjct: 300 EEKKEEPAEESDDDMGFSLFD 320

>RLA0_LUPLU (P50345) 60S acidic ribosomal protein P0|
          Length = 322

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 39/83 (46%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
 Frame = -1

Query: 393 APHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXXXXXXXXXXX 214
           APH+F+NAYKNVLAVA+ T+YS+  AD++KEYLKDPSKFA                    
Sbjct: 240 APHVFINAYKNVLAVAVATEYSFPQADEVKEYLKDPSKFAAVAAAAAPAADSGAAPAAAA 299

Query: 213 XXXXXX--XXXSDGEMGFSLFDD 151
                      SD EMGF LFD+
Sbjct: 300 KAEKEEEPAEESDDEMGFGLFDE 322

>RLA0A_ARATH (O04204) 60S acidic ribosomal protein P0-A|
          Length = 317

 Score = 73.9 bits (180), Expect = 8e-14
 Identities = 39/79 (49%), Positives = 46/79 (58%)
 Frame = -1

Query: 393 APHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXXXXXXXXXXX 214
           APHMFLNAYKNVLAVAL T+YS+  A+ +KE+LKDP+KFAV                   
Sbjct: 240 APHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKFAV--AVAAPVSGESGGAVVAV 297

Query: 213 XXXXXXXXXSDGEMGFSLF 157
                    SDG+MGF LF
Sbjct: 298 AVEEEAAEESDGDMGFDLF 316

>RLA0B_ARATH (Q42112) 60S acidic ribosomal protein P0-B|
          Length = 320

 Score = 70.5 bits (171), Expect = 9e-13
 Identities = 34/81 (41%), Positives = 43/81 (53%)
 Frame = -1

Query: 393 APHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXXXXXXXXXXX 214
           APHMF+NAYKN LA+A+ T+Y++  A+K+KEYLKDPSKFAV                   
Sbjct: 239 APHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKFAVASVAAVSADAGGGAPAAAK 298

Query: 213 XXXXXXXXXSDGEMGFSLFDD 151
                     D    F LFD+
Sbjct: 299 VEEKEESDEEDYGGDFGLFDE 319

>RLA0C_ARATH (P57691) 60S acidic ribosomal protein P0-C|
          Length = 323

 Score = 70.5 bits (171), Expect = 9e-13
 Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
 Frame = -1

Query: 393 APHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXXXXXXXXXXX 214
           APHMF+NAYKN LA+A+ TDY++  A+K+KE+LKDPSKF V                   
Sbjct: 239 APHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKFVVAAAAVSADAGGGSAQAGAA 298

Query: 213 XXXXXXXXXSDG---EMGFSLFDD 151
                    SD    E GF LFD+
Sbjct: 299 AKVEEKKEESDEEDYEGGFGLFDE 322

>RLA0_BRARE (Q9PV90) 60S acidic ribosomal protein P0 (L10E)|
          Length = 319

 Score = 62.4 bits (150), Expect = 3e-10
 Identities = 31/79 (39%), Positives = 39/79 (49%)
 Frame = -1

Query: 390 PHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXXXXXXXXXXXX 211
           PH  +N YK VLAV +ETDY++  A+K+K YL DP+ FAV                    
Sbjct: 241 PHTIINGYKRVLAVTVETDYTFPLAEKVKAYLADPTAFAVAAPVAAATEQKSAAPAAKEE 300

Query: 210 XXXXXXXXSDGEMGFSLFD 154
                   SD +MGF LFD
Sbjct: 301 APKEDSEESDEDMGFGLFD 319

>RLA0_CHICK (P47826) 60S acidic ribosomal protein P0 (L10E)|
          Length = 316

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 30/79 (37%), Positives = 38/79 (48%)
 Frame = -1

Query: 390 PHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXXXXXXXXXXXX 211
           PH  +N YK VLAVA+ETDY++  A+K+K +L DPS F                      
Sbjct: 238 PHSIVNGYKRVLAVAVETDYTFPLAEKVKAFLADPSAFVAAAPVVVETAAPAAAAAPAKE 297

Query: 210 XXXXXXXXSDGEMGFSLFD 154
                   SD +MGF LFD
Sbjct: 298 APKEESEESDEDMGFGLFD 316

>RLA0_RANSY (Q9DG68) 60S acidic ribosomal protein P0 (L10E)|
          Length = 315

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 32/79 (40%), Positives = 39/79 (49%)
 Frame = -1

Query: 390 PHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXXXXXXXXXXXX 211
           PH  +N YK VLA+A+ETDYS+  ADK+K +L DPS F V                    
Sbjct: 238 PHSVVNGYKRVLALAVETDYSFPLADKVKAFLADPSAFVV-AAPVAETAAAPAASAAPAK 296

Query: 210 XXXXXXXXSDGEMGFSLFD 154
                   SD +MGF LFD
Sbjct: 297 EEKEESEESDDDMGFGLFD 315

>RLA0_ICTPU (Q90YX1) 60S acidic ribosomal protein P0 (L10E)|
          Length = 317

 Score = 57.8 bits (138), Expect = 6e-09
 Identities = 25/40 (62%), Positives = 31/40 (77%)
 Frame = -1

Query: 390 PHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAV 271
           PH  +N YK VL VA+ETDYS+  ADK+K +L DPS+FAV
Sbjct: 238 PHSIINGYKRVLRVAVETDYSFPMADKVKAFLADPSRFAV 277

>RLA0_RAT (P19945) 60S acidic ribosomal protein P0 (L10E)|
          Length = 317

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = -1

Query: 390 PHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXX-XXXXXXXXXXXXXXXXX 214
           PH  +N YK VLA+++ETDY++  A+K+K +L DPS FA                     
Sbjct: 238 PHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFAAAAPVAAATTAAPAAAAAPAK 297

Query: 213 XXXXXXXXXSDGEMGFSLFD 154
                    SD +MGF LFD
Sbjct: 298 VEAKEESEESDEDMGFGLFD 317

>RLA0_HUMAN (P05388) 60S acidic ribosomal protein P0 (L10E)|
          Length = 317

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = -1

Query: 390 PHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKF-AVXXXXXXXXXXXXXXXXXXX 214
           PH  +N YK VLA+++ETDY++  A+K+K +L DPS F A                    
Sbjct: 238 PHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAK 297

Query: 213 XXXXXXXXXSDGEMGFSLFD 154
                    SD +MGF LFD
Sbjct: 298 VEAKEESEESDEDMGFGLFD 317

>RLA0_DROME (P19889) 60S acidic ribosomal protein P0 (DNA-(apurinic or|
           apyrimidinic site) lyase) (EC 4.2.99.18)
           (Apurinic-apyrimidinic endonuclease)
          Length = 317

 Score = 55.8 bits (133), Expect = 2e-08
 Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = -1

Query: 393 APHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXX-XXXXXXXXXXX 217
           APH   N +KN+LA+A  T+  +  A  IKEY+KDPSKFA                    
Sbjct: 237 APHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEE 296

Query: 216 XXXXXXXXXXSDGEMGFSLFD 154
                      D +MGF LFD
Sbjct: 297 AKKPESESEEEDDDMGFGLFD 317

>RLA0_BOVIN (Q95140) 60S acidic ribosomal protein P0 (L10E) (Fragment)|
          Length = 309

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = -1

Query: 390 PHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKF--AVXXXXXXXXXXXXXXXXXX 217
           PH  +N YK VLA+++ETDY++  A+K+K +L DPS F  A                   
Sbjct: 229 PHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAAPAAAPAATTAAPA 288

Query: 216 XXXXXXXXXXSDGEMGFSLFD 154
                     SD +MGF LFD
Sbjct: 289 KVEAKEESEESDEDMGFGLFD 309

>RLA0_MOUSE (P14869) 60S acidic ribosomal protein P0 (L10E)|
          Length = 317

 Score = 54.7 bits (130), Expect = 5e-08
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = -1

Query: 390 PHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXX-XXXXXXXXXXXXXXXXX 214
           PH  +N YK VLA+++ET+Y++   +K+K +L DPS FA                     
Sbjct: 238 PHSIINGYKRVLALSVETEYTFPLTEKVKAFLADPSAFAAAAPAAAATTAAPAAAAAPAK 297

Query: 213 XXXXXXXXXSDGEMGFSLFD 154
                    SD +MGF LFD
Sbjct: 298 AEAKEESEESDEDMGFGLFD 317

>RLA0_CERCA (Q9U3U0) 60S acidic ribosomal protein P0 (CcP0)|
          Length = 317

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = -1

Query: 393 APHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKF-AVXXXXXXXXXXXXXXXXXX 217
           APH   N +KN+LA+A  T+  +  A  IKE++KDPSKF A                   
Sbjct: 237 APHSIANGFKNLLAIAASTEVEFKQAATIKEFIKDPSKFVAAAAASAPAAGAGAAAEKKE 296

Query: 216 XXXXXXXXXXSDGEMGFSLFD 154
                      D +MGF LFD
Sbjct: 297 EAKKEESESEEDDDMGFGLFD 317

>RLA0_SCHPO (O74864) 60S acidic ribosomal protein P0|
          Length = 312

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 26/78 (33%), Positives = 38/78 (48%)
 Frame = -1

Query: 387 HMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXXXXXXXXXXXXX 208
           H  +NAYKN++AV+L T+Y+++  ++ K +L DPS F V                     
Sbjct: 237 HSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAFVV--AAAPAAAAGGEAEAPAAEA 294

Query: 207 XXXXXXXSDGEMGFSLFD 154
                  SD +MGF LFD
Sbjct: 295 AAEEEEESDEDMGFGLFD 312

>RLA0_PLAF8 (Q94660) 60S acidic ribosomal protein P0|
          Length = 316

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 20/79 (25%), Positives = 38/79 (48%)
 Frame = -1

Query: 390 PHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXXXXXXXXXXXX 211
           PH+F+ A+KN++A+ +++DY++     +K+++++P  FA                     
Sbjct: 238 PHVFVEAFKNIVALIIDSDYTFPLMKILKKWVENPEAFAAVAAPASAAKADEPKKEEAKK 297

Query: 210 XXXXXXXXSDGEMGFSLFD 154
                    DG MGF +FD
Sbjct: 298 VEEEEEEEEDGFMGFGMFD 316

>RLA0_EIMTE (Q967Y7) 60S acidic ribosomal protein P0|
          Length = 314

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 23/80 (28%), Positives = 36/80 (45%)
 Frame = -1

Query: 393 APHMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXXXXXXXXXXX 214
           APH  L A++N  A+ L+T + +    ++KE +++P+ FA                    
Sbjct: 236 APHSILEAFRNCAALCLDTPFCFPQMQRLKEMVENPAAFA-AAAAPAAAAPAAAPAAAAK 294

Query: 213 XXXXXXXXXSDGEMGFSLFD 154
                     DG+MGFSLFD
Sbjct: 295 APEPEEEEEEDGDMGFSLFD 314

>RLA0_CAEEL (Q93572) 60S acidic ribosomal protein P0|
          Length = 311

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 26/78 (33%), Positives = 33/78 (42%)
 Frame = -1

Query: 387 HMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXXXXXXXXXXXXX 208
           H   N  +N+L VA  TD S+  A+ IK ++ DPSKFA                      
Sbjct: 238 HSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPSKFA----AAAPAAAAAPAAAAPAAK 293

Query: 207 XXXXXXXSDGEMGFSLFD 154
                  SD +MGF LFD
Sbjct: 294 KEEPKEESDDDMGFGLFD 311

>RLA0_YEAST (P05317) 60S acidic ribosomal protein P0 (L10E)|
          Length = 312

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 21/78 (26%), Positives = 33/78 (42%)
 Frame = -1

Query: 387 HMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFAVXXXXXXXXXXXXXXXXXXXXX 208
           H  +N YK++LAVA+   Y Y   + + + +++P K+A                      
Sbjct: 237 HTLINNYKDLLAVAIAASYHYPEIEDLVDRIENPEKYA--AAAPAATSAASGDAAPAEEA 294

Query: 207 XXXXXXXSDGEMGFSLFD 154
                  SD +MGF LFD
Sbjct: 295 AAEEEEESDDDMGFGLFD 312

>RLA0_DICDI (P22685) 60S acidic ribosomal protein P0|
          Length = 305

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 15/29 (51%), Positives = 23/29 (79%)
 Frame = -1

Query: 390 PHMFLNAYKNVLAVALETDYSYDHADKIK 304
           PH  +NA+KN+LA++ ET Y++D A+K K
Sbjct: 234 PHSVMNAFKNLLAISFETSYTFDAAEKFK 262

>RLA0_NEUCR (Q96TJ5) 60S acidic ribosomal protein P0|
          Length = 313

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 16/38 (42%), Positives = 27/38 (71%)
 Frame = -1

Query: 387 HMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFA 274
           H  +NAYK VLAVA+ET+ S+   +++K+ + +P  +A
Sbjct: 237 HSVVNAYKKVLAVAIETEISWPEIEELKDRIANPEAYA 274

>RLA0_PODAN (Q9C3Z6) 60S acidic ribosomal protein P0|
          Length = 314

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 15/38 (39%), Positives = 27/38 (71%)
 Frame = -1

Query: 387 HMFLNAYKNVLAVALETDYSYDHADKIKEYLKDPSKFA 274
           H  +N+YK VLAVA+ET+ S+   +++K+ + +P  +A
Sbjct: 237 HSLVNSYKKVLAVAIETEISWPEIEELKDRIANPEAYA 274

>RLA0_TRYCR (P26796) 60S acidic ribosomal protein P0|
          Length = 323

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 390 PHMFLNAYKNVLAVALETDYSYDHAD 313
           PHM ++A+K +L  ++ T+Y +D  D
Sbjct: 245 PHMIMDAFKTLLGASVATEYEFDEFD 270

>Y421_METJA (Q57864) Hypothetical protein MJ0421|
          Length = 360

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = -1

Query: 366 KNVLAVALETDYSYDH----ADKIKEYLKDPSKFAV 271
           + VL V  ET+  +D     A+KIK+Y+K+   FAV
Sbjct: 58  ERVLKVYFETETDFDKIVNLAEKIKDYIKEDETFAV 93

>Y4254_ANAVT (Q44491) Hypothetical protein Ava_4254|
          Length = 86

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 369 YKNVLAVALETDYSYDHADKIKEYLKDPSK 280
           Y+N+ A+A ET   Y H D++K  LK   K
Sbjct: 51  YQNLTALAAETYEIYRHLDELKSQLKSLEK 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,609,298
Number of Sequences: 219361
Number of extensions: 508496
Number of successful extensions: 1138
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)