ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart13c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genom... 212 7e-52
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 212 7e-52
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 212 7e-52
4dbj|AK064239.1| Oryza sativa (japonica cultivar-group) cDNA clon... 212 7e-52
5gb|AY106034.1| Zea mays PCO099903 mRNA sequence 131 2e-27
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
7dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
8dbj|AK062887.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
9ref|NM_192605.1| Oryza sativa (japonica cultivar-group), predic... 48 0.025
10gb|AC098647.2| Homo sapiens chromosome 3 clone RP11-130G7, compl... 48 0.025
11gb|AC099779.2| Homo sapiens chromosome 3 clone RP11-760G13, comp... 48 0.025
12dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
13dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
14dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
15dbj|AK105670.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.025
16dbj|AK105266.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.025
17ref|XM_476068.1| Oryza sativa (japonica cultivar-group), predic... 46 0.099
18gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome... 46 0.099
19dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.099
20gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome... 46 0.099
21gb|AC153623.8| Mus musculus 6 BAC RP23-459F14 (Roswell Park Canc... 44 0.39
22gb|AE009380.1| Agrobacterium tumefaciens str. C58 linear chromos... 42 1.5
23gb|AE008234.1| Agrobacterium tumefaciens str. C58 linear chromos... 42 1.5
24gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 42 1.5
25gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.5
26dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
27dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
28dbj|AK105531.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
29gb|AC144628.3| Mus musculus BAC clone RP23-463L22 from 14, compl... 42 1.5
30emb|AL808128.4| Mouse DNA sequence from clone RP23-387C21 on chr... 42 1.5
31dbj|AP004373.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 1.5
32gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 6.1
33ref|XM_476821.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.1
34gb|AC115483.2| Drosophila melanogaster clone BACR20D18, complete... 40 6.1
35gb|AC163687.5| Mus musculus BAC clone RP23-3H13 from chromosome ... 40 6.1
36emb|CR956355.2| Pan troglodytes chromosome X BAC RP43-051D20, co... 40 6.1
37ref|XM_646586.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 6.1
38emb|AL512592.14| Human DNA sequence from clone RP11-35D6 on chro... 40 6.1
39ref|XM_776886.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.1
40gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 40 6.1
41emb|CR354539.13| Zebrafish DNA sequence from clone CH211-250O1 i... 40 6.1
42gb|AC105021.6| Homo sapiens chromosome 17, clone CTD-2033D24, co... 40 6.1
43gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosyn... 40 6.1
44gb|AC104115.3| Homo sapiens chromosome 5 clone RP11-252I14, comp... 40 6.1
45gb|AC009837.13| Homo sapiens chromosome 17, clone RP11-550K23, c... 40 6.1
46gb|AC154288.2| Mus musculus BAC clone RP23-447G10 from 17, compl... 40 6.1
47gb|AF128273.1|AF128273 Streptomyces griseus putative deoxyhexose... 40 6.1
48gb|AE003640.4| Drosophila melanogaster chromosome 2L, section 49... 40 6.1
49emb|CT009575.8| Mouse DNA sequence from clone RP23-107N17 on chr... 40 6.1
50dbj|AP004957.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 6.1
51emb|AL928574.7| Mouse DNA sequence from clone RP23-332L19 on chr... 40 6.1 
>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete
             sequence
          Length = 141582

 Score =  212 bits (107), Expect = 7e-52
 Identities = 218/255 (85%)
 Strand = Plus / Minus

                                                                         
Query: 196   ggcggccggtggaggaattcgatgcactgctcgccaggccgctggtcggggcgtccggcg 255
             ||||| ||||| |||||  ||||||||| |||||| |  |||||||||||||| ||||||
Sbjct: 99376 ggcgggcggtgcaggaacgcgatgcactcctcgccggagcgctggtcggggcggccggcg 99317

                                                                         
Query: 256   atgcagttctgccggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcaa 315
             ||||||||||| |||||||| | ||| |||||||| ||||| ||||||||||||||||| 
Sbjct: 99316 atgcagttctggcggtcgtcaacgtgcggcacctcgaggcagcggtgcggctcgccgcag 99257

                                                                         
Query: 316   aagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcgggg 375
             ||||||||||||||||||||||||||||||||||  || || |||||||||   || |||
Sbjct: 99256 aagaagttgtgggagtaggtgaagttcttgaggtgcgggagggcgcagatggagtccggg 99197

                                                                         
Query: 376   atctcgccggcaagcatgttgttggcgacattgagctgctcgagggcgcgcatgttgccg 435
             ||||||||||| ||   |||||  ||||| ||||||||||| || || ||||||| ||||
Sbjct: 99196 atctcgccggcgaggccgttgtgcgcgacgttgagctgctccagcgcccgcatgtggccg 99137

                            
Query: 436   atggtgtcgggcagc 450
             ||||| || ||||||
Sbjct: 99136 atggtctccggcagc 99122
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  212 bits (107), Expect = 7e-52
 Identities = 218/255 (85%)
 Strand = Plus / Plus

                                                                            
Query: 196      ggcggccggtggaggaattcgatgcactgctcgccaggccgctggtcggggcgtccggcg 255
                ||||| ||||| |||||  ||||||||| |||||| |  |||||||||||||| ||||||
Sbjct: 32780165 ggcgggcggtgcaggaacgcgatgcactcctcgccggagcgctggtcggggcggccggcg 32780224

                                                                            
Query: 256      atgcagttctgccggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcaa 315
                ||||||||||| |||||||| | ||| |||||||| ||||| ||||||||||||||||| 
Sbjct: 32780225 atgcagttctggcggtcgtcaacgtgcggcacctcgaggcagcggtgcggctcgccgcag 32780284

                                                                            
Query: 316      aagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcgggg 375
                ||||||||||||||||||||||||||||||||||  || || |||||||||   || |||
Sbjct: 32780285 aagaagttgtgggagtaggtgaagttcttgaggtgcgggagggcgcagatggagtccggg 32780344

                                                                            
Query: 376      atctcgccggcaagcatgttgttggcgacattgagctgctcgagggcgcgcatgttgccg 435
                ||||||||||| ||   |||||  ||||| ||||||||||| || || ||||||| ||||
Sbjct: 32780345 atctcgccggcgaggccgttgtgcgcgacgttgagctgctccagcgcccgcatgtggccg 32780404

                               
Query: 436      atggtgtcgggcagc 450
                ||||| || ||||||
Sbjct: 32780405 atggtctccggcagc 32780419
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  212 bits (107), Expect = 7e-52
 Identities = 218/255 (85%)
 Strand = Plus / Plus

                                                                            
Query: 196      ggcggccggtggaggaattcgatgcactgctcgccaggccgctggtcggggcgtccggcg 255
                ||||| ||||| |||||  ||||||||| |||||| |  |||||||||||||| ||||||
Sbjct: 32870675 ggcgggcggtgcaggaacgcgatgcactcctcgccggagcgctggtcggggcggccggcg 32870734

                                                                            
Query: 256      atgcagttctgccggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcaa 315
                ||||||||||| |||||||| | ||| |||||||| ||||| ||||||||||||||||| 
Sbjct: 32870735 atgcagttctggcggtcgtcaacgtgcggcacctcgaggcagcggtgcggctcgccgcag 32870794

                                                                            
Query: 316      aagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcgggg 375
                ||||||||||||||||||||||||||||||||||  || || |||||||||   || |||
Sbjct: 32870795 aagaagttgtgggagtaggtgaagttcttgaggtgcgggagggcgcagatggagtccggg 32870854

                                                                            
Query: 376      atctcgccggcaagcatgttgttggcgacattgagctgctcgagggcgcgcatgttgccg 435
                ||||||||||| ||   |||||  ||||| ||||||||||| || || ||||||| ||||
Sbjct: 32870855 atctcgccggcgaggccgttgtgcgcgacgttgagctgctccagcgcccgcatgtggccg 32870914

                               
Query: 436      atggtgtcgggcagc 450
                ||||| || ||||||
Sbjct: 32870915 atggtctccggcagc 32870929
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>dbj|AK064239.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A10, full
            insert sequence
          Length = 1408

 Score =  212 bits (107), Expect = 7e-52
 Identities = 218/255 (85%)
 Strand = Plus / Minus

                                                                        
Query: 196  ggcggccggtggaggaattcgatgcactgctcgccaggccgctggtcggggcgtccggcg 255
            ||||| ||||| |||||  ||||||||| |||||| |  |||||||||||||| ||||||
Sbjct: 1197 ggcgggcggtgcaggaacgcgatgcactcctcgccggagcgctggtcggggcggccggcg 1138

                                                                        
Query: 256  atgcagttctgccggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcaa 315
            ||||||||||| |||||||| | ||| |||||||| ||||| ||||||||||||||||| 
Sbjct: 1137 atgcagttctggcggtcgtcaacgtgcggcacctcgaggcagcggtgcggctcgccgcag 1078

                                                                        
Query: 316  aagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcgggg 375
            ||||||||||||||||||||||||||||||||||  || || |||||||||   || |||
Sbjct: 1077 aagaagttgtgggagtaggtgaagttcttgaggtgcgggagggcgcagatggagtccggg 1018

                                                                        
Query: 376  atctcgccggcaagcatgttgttggcgacattgagctgctcgagggcgcgcatgttgccg 435
            ||||||||||| ||   |||||  ||||| ||||||||||| || || ||||||| ||||
Sbjct: 1017 atctcgccggcgaggccgttgtgcgcgacgttgagctgctccagcgcccgcatgtggccg 958

                           
Query: 436  atggtgtcgggcagc 450
            ||||| || ||||||
Sbjct: 957  atggtctccggcagc 943
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>gb|AY106034.1| Zea mays PCO099903 mRNA sequence
          Length = 687

 Score =  131 bits (66), Expect = 2e-27
 Identities = 153/182 (84%)
 Strand = Plus / Minus

                                                                       
Query: 268 cggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcaaaagaagttgtgg 327
           |||||||||| | | |||||||| ||  ||||||||||||||||||| ||||||||||  
Sbjct: 684 cggtcgtcgacgcgcggcacctcgagcgaccggtgcggctcgccgcagaagaagttgtac 625

                                                                       
Query: 328 gagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcggggatctcgccggca 387
           ||||||||||||||||||||||  |||||  |||||| |||||| || ||||||||||| 
Sbjct: 624 gagtaggtgaagttcttgaggtgcggcaggccgcagacgctctccggtatctcgccggcg 565

                                                                       
Query: 388 agcatgttgttggcgacattgagctgctcgagggcgcgcatgttgccgatggtgtcgggc 447
           ||   |||||  ||||| | ||||||||| || || |||||||||||||| ||||| |||
Sbjct: 564 aggcggttgtgcgcgacgtcgagctgctccagcgcccgcatgttgccgatcgtgtccggc 505

             
Query: 448 ag 449
           ||
Sbjct: 504 ag 503
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 154/191 (80%)
 Strand = Plus / Plus

                                                                           
Query: 196     ggcggccggtggaggaattcgatgcactgctcgccaggccgctggtcggggcgtccggcg 255
               ||||| |||||||||||  ||| |||||| ||| | || ||||||||||| |  ||||||
Sbjct: 4061878 ggcgggcggtggaggaaggcgaggcactggtcggccgggcgctggtcgggcctcccggcg 4061937

                                                                           
Query: 256     atgcagttctgccggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcaa 315
               ||||||||||| |||||||||| | || | |     |||||||| | |||||||||||| 
Sbjct: 4061938 atgcagttctggcggtcgtcgacgcggcggaggcggaggcaccgctccggctcgccgcag 4061997

                                                                           
Query: 316     aagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcgggg 375
               ||| ||||||  ||||||||||||||| ||||    |||||||||||||| | ||| |||
Sbjct: 4061998 aagtagttgtatgagtaggtgaagttcctgagccgcggcagcgcgcagatcccctccggg 4062057

                          
Query: 376     atctcgccggc 386
               || | ||||||
Sbjct: 4062058 atgtggccggc 4062068
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>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0534H07
          Length = 144689

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 154/191 (80%)
 Strand = Plus / Plus

                                                                         
Query: 196   ggcggccggtggaggaattcgatgcactgctcgccaggccgctggtcggggcgtccggcg 255
             ||||| |||||||||||  ||| |||||| ||| | || ||||||||||| |  ||||||
Sbjct: 54736 ggcgggcggtggaggaaggcgaggcactggtcggccgggcgctggtcgggcctcccggcg 54795

                                                                         
Query: 256   atgcagttctgccggtcgtcgatgtggggcacctccaggcaccggtgcggctcgccgcaa 315
             ||||||||||| |||||||||| | || | |     |||||||| | |||||||||||| 
Sbjct: 54796 atgcagttctggcggtcgtcgacgcggcggaggcggaggcaccgctccggctcgccgcag 54855

                                                                         
Query: 316   aagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcgggg 375
             ||| ||||||  ||||||||||||||| ||||    |||||||||||||| | ||| |||
Sbjct: 54856 aagtagttgtatgagtaggtgaagttcctgagccgcggcagcgcgcagatcccctccggg 54915

                        
Query: 376   atctcgccggc 386
             || | ||||||
Sbjct: 54916 atgtggccggc 54926
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>dbj|AK062887.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-D11, full
            insert sequence
          Length = 1302

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                        
Query: 306  ctcgccgcaaaagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagat 365
            ||||||||| ||| ||||||  ||||||||||||||| ||||    ||||||||||||||
Sbjct: 1018 ctcgccgcagaagtagttgtatgagtaggtgaagttcctgagccgcggcagcgcgcagat 959

                                 
Query: 366  gctctcggggatctcgccggc 386
             | ||| ||||| | ||||||
Sbjct: 958  cccctccgggatgtggccggc 938
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>ref|NM_192605.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1713

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 302  gcggctcgccgcaaaagaagttgtgggagtaggtgaagttcttgaggt 349
            |||||||||||   | |||||||| ||||||||||||||||| |||||
Sbjct: 1048 gcggctcgccggtgatgaagttgtaggagtaggtgaagttctggaggt 1001



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 219  gcactgctcgccaggccgctggtcggggcgtccggcgatgcagttctgccggtcgtcga 277
            |||||||||  | |||| |||||||||||| |||| |||||||||| | || |||||||
Sbjct: 1131 gcactgctccgccggcctctggtcggggcggccggggatgcagttccggcgatcgtcga 1073
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>gb|AC098647.2| Homo sapiens chromosome 3 clone RP11-130G7, complete sequence
          Length = 159521

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 68    gtgtgtgcatttttacccttttct 91
             ||||||||||||||||||||||||
Sbjct: 67673 gtgtgtgcatttttacccttttct 67696
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>gb|AC099779.2| Homo sapiens chromosome 3 clone RP11-760G13, complete sequence
          Length = 198235

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 68     gtgtgtgcatttttacccttttct 91
              ||||||||||||||||||||||||
Sbjct: 144264 gtgtgtgcatttttacccttttct 144287
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 318      gaagttgtgggagtaggtgaagttcttgaggt 349
                |||||||| ||||||||||||||||| |||||
Sbjct: 23282439 gaagttgtaggagtaggtgaagttctggaggt 23282408



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                           
Query: 219      gcactgctcgccaggccgctggtcggggcgtccggcgatgcagttctgccggtcgtcga 277
                |||||||||  | |||| |||||||||||| |||| |||||||||| | || |||||||
Sbjct: 23282538 gcactgctccgccggcctctggtcggggcggccggggatgcagttccggcgatcgtcga 23282480
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>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1103C09
          Length = 163996

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 318  gaagttgtgggagtaggtgaagttcttgaggt 349
            |||||||| ||||||||||||||||| |||||
Sbjct: 8137 gaagttgtaggagtaggtgaagttctggaggt 8106



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 219  gcactgctcgccaggccgctggtcggggcgtccggcgatgcagttctgccggtcgtcga 277
            |||||||||  | |||| |||||||||||| |||| |||||||||| | || |||||||
Sbjct: 8236 gcactgctccgccggcctctggtcggggcggccggggatgcagttccggcgatcgtcga 8178
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>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0451D05
          Length = 148381

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 318   gaagttgtgggagtaggtgaagttcttgaggt 349
             |||||||| ||||||||||||||||| |||||
Sbjct: 69181 gaagttgtaggagtaggtgaagttctggaggt 69150



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                        
Query: 219   gcactgctcgccaggccgctggtcggggcgtccggcgatgcagttctgccggtcgtcga 277
             |||||||||  | |||| |||||||||||| |||| |||||||||| | || |||||||
Sbjct: 69280 gcactgctccgccggcctctggtcggggcggccggggatgcagttccggcgatcgtcga 69222
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>dbj|AK105670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A04, full
            insert sequence
          Length = 1985

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 318  gaagttgtgggagtaggtgaagttcttgaggt 349
            |||||||| ||||||||||||||||| |||||
Sbjct: 1091 gaagttgtaggagtaggtgaagttctggaggt 1060



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 219  gcactgctcgccaggccgctggtcggggcgtccggcgatgcagttctgccggtcgtcga 277
            |||||||||  | |||| |||||||||||| |||| |||||||||| | || |||||||
Sbjct: 1190 gcactgctccgccggcctctggtcggggcggccggggatgcagttccggcgatcgtcga 1132
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>dbj|AK105266.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D06, full
            insert sequence
          Length = 2042

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 318  gaagttgtgggagtaggtgaagttcttgaggt 349
            |||||||| ||||||||||||||||| |||||
Sbjct: 1090 gaagttgtaggagtaggtgaagttctggaggt 1059



 Score = 46.1 bits (23), Expect = 0.099
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 219  gcactgctcgccaggccgctggtcggggcgtccggcgatgcagttctgccggtcgtcga 277
            |||||||||  | |||| |||||||||||| |||| |||||||||| | || |||||||
Sbjct: 1189 gcactgctccgccggcctctggtcggggcggccggggatgcagttccggcgatcgtcga 1131
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>ref|XM_476068.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1245

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 302 gcggctcgccgcaaaagaagttgtgggagtaggtgaagttcttgagg 348
           |||||||||||   ||| |||||| |||| |||||||||||||||||
Sbjct: 988 gcggctcgccggtgaagtagttgtaggagaaggtgaagttcttgagg 942
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>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09,
              complete sequence
          Length = 145070

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                             
Query: 302    gcggctcgccgcaaaagaagttgtgggagtaggtgaagttcttgagg 348
              |||||||||||   ||| |||||| |||| |||||||||||||||||
Sbjct: 124528 gcggctcgccggtgaagtagttgtaggagaaggtgaagttcttgagg 124574
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                              
Query: 302     gcggctcgccgcaaaagaagttgtgggagtaggtgaagttcttgagg 348
               |||||||||||   ||| |||||| |||| |||||||||||||||||
Sbjct: 4756523 gcggctcgccggtgaagtagttgtaggagaaggtgaagttcttgagg 4756569
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>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
             complete sequence
          Length = 187956

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 302   gcggctcgccgcaaaagaagttgtgggagtaggtgaagttcttgagg 348
             |||||||||||   ||| |||||| |||| |||||||||||||||||
Sbjct: 28931 gcggctcgccggtgaagtagttgtaggagaaggtgaagttcttgagg 28977
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>gb|AC153623.8| Mus musculus 6 BAC RP23-459F14 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205825

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 32     ttgtttccgaaaaataaacatt 53
              ||||||||||||||||||||||
Sbjct: 119861 ttgtttccgaaaaataaacatt 119840
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>gb|AE009380.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 150 of
            187 of the complete sequence
          Length = 10010

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 391  atgttgttggcgacattgagc 411
            |||||||||||||||||||||
Sbjct: 8374 atgttgttggcgacattgagc 8394
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>gb|AE008234.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 38 of
            187 of the complete sequence
          Length = 13956

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 391  atgttgttggcgacattgagc 411
            |||||||||||||||||||||
Sbjct: 5587 atgttgttggcgacattgagc 5567
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 383     cggcaagcatgttgttggcga 403
               |||||||||||||||||||||
Sbjct: 2053437 cggcaagcatgttgttggcga 2053417
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 415     tcgagggcgcgcatgttgccgatgg 439
               ||||| |||||||||||||||||||
Sbjct: 2795511 tcgagcgcgcgcatgttgccgatgg 2795535
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 330      gtaggtgaagttcttgaggttgggcagcgcgcagatg 366
                ||||||||||||||||||| |  |||||| |||||||
Sbjct: 29239579 gtaggtgaagttcttgaggctctgcagcgagcagatg 29239543
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>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0018H04
          Length = 142053

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 330  gtaggtgaagttcttgaggttgggcagcgcgcagatg 366
            ||||||||||||||||||| |  |||||| |||||||
Sbjct: 2377 gtaggtgaagttcttgaggctctgcagcgagcagatg 2341
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>dbj|AK105531.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G10, full
           insert sequence
          Length = 1447

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 330 gtaggtgaagttcttgaggttgggcagcgcgcagatg 366
           ||||||||||||||||||| |  |||||| |||||||
Sbjct: 550 gtaggtgaagttcttgaggctctgcagcgagcagatg 514
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>gb|AC144628.3| Mus musculus BAC clone RP23-463L22 from 14, complete sequence
          Length = 174162

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 23    gttatttctttgtttccgaaaaata 47
             ||||||||||||||||| |||||||
Sbjct: 54178 gttatttctttgtttcctaaaaata 54154
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>emb|AL808128.4| Mouse DNA sequence from clone RP23-387C21 on chromosome 2, complete
             sequence
          Length = 184736

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 56    agtatataccaagtgtgtgca 76
             |||||||||||||||||||||
Sbjct: 42684 agtatataccaagtgtgtgca 42704
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>dbj|AP004373.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-652L13, complete
            sequences
          Length = 96727

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 13   tcaatccattgttatttcttt 33
            |||||||||||||||||||||
Sbjct: 6552 tcaatccattgttatttcttt 6532
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 425    gcatgttgccgatggtgtcgggca 448
              ||||||||| ||||||||||||||
Sbjct: 740830 gcatgttgctgatggtgtcgggca 740853
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>ref|XM_476821.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1301

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 59/72 (81%)
 Strand = Plus / Minus

                                                                        
Query: 315  aaagaagttgtgggagtaggtgaagttcttgaggttgggcagcgcgcagatgctctcggg 374
            |||| ||||||  ||||||||||||||| ||||    |||||||||||||| | ||| ||
Sbjct: 1009 aaagtagttgtatgagtaggtgaagttcctgagccgcggcagcgcgcagatcccctccgg 950

                        
Query: 375  gatctcgccggc 386
            ||| | ||||||
Sbjct: 949  gatgtggccggc 938
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>gb|AC115483.2| Drosophila melanogaster clone BACR20D18, complete sequence
          Length = 158241

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 39     cgaaaaataaacattacagtatat 62
              |||||||||||||||||| |||||
Sbjct: 139453 cgaaaaataaacattacaatatat 139476
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>gb|AC163687.5| Mus musculus BAC clone RP23-3H13 from chromosome 17, complete sequence
          Length = 220643

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   agtaggtgaagttcttgagg 348
             ||||||||||||||||||||
Sbjct: 22675 agtaggtgaagttcttgagg 22656
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>emb|CR956355.2| Pan troglodytes chromosome X BAC RP43-051D20, complete sequence
          Length = 185393

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 13    tcaatccattgttatttctttgtt 36
             ||||||||| ||||||||||||||
Sbjct: 74644 tcaatccatggttatttctttgtt 74667
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>ref|XM_646586.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (152.t00006)
           partial mRNA
          Length = 1329

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 18  ccattgttatttctttgttt 37
           ||||||||||||||||||||
Sbjct: 343 ccattgttatttctttgttt 362
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>emb|AL512592.14| Human DNA sequence from clone RP11-35D6 on chromosome 6 Contains part
             of a novel gene (FLJ00197), complete sequence
          Length = 60858

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 41    aaaaataaacattacagtatatac 64
             ||||||||| ||||||||||||||
Sbjct: 39287 aaaaataaaaattacagtatatac 39310
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>ref|XM_776886.1| PREDICTED: Strongylocentrotus purpuratus similar to Lon protease
           homolog, mitochondrial precursor (Lon protease-like
           protein) (LONP) (LONHs) (LOC576598), mRNA
          Length = 2241

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 111 acagctacaaattccagtat 130
           ||||||||||||||||||||
Sbjct: 914 acagctacaaattccagtat 895
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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 180     cgcggcacactgtgcaggcg 199
               ||||||||||||||||||||
Sbjct: 1202900 cgcggcacactgtgcaggcg 1202881
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>emb|CR354539.13| Zebrafish DNA sequence from clone CH211-250O1 in linkage group 13,
              complete sequence
          Length = 145294

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     aataaacattacagtatata 63
              ||||||||||||||||||||
Sbjct: 115300 aataaacattacagtatata 115281
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>gb|AC105021.6| Homo sapiens chromosome 17, clone CTD-2033D24, complete sequence
          Length = 143552

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 105   cagcaaacagctacaaattccagt 128
             |||||||||||||||||| |||||
Sbjct: 98610 cagcaaacagctacaaataccagt 98587
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>gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosynthetic gene cluster, complete
             cds
          Length = 77457

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 232   ggccgctggtcggggcgtccggcg 255
             |||||| |||||||||||||||||
Sbjct: 58430 ggccgccggtcggggcgtccggcg 58407
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>gb|AC104115.3| Homo sapiens chromosome 5 clone RP11-252I14, complete sequence
          Length = 115793

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 187   cactgtgcaggcggccggtggagg 210
             ||||||||||||| ||||||||||
Sbjct: 56115 cactgtgcaggcgaccggtggagg 56092
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>gb|AC009837.13| Homo sapiens chromosome 17, clone RP11-550K23, complete sequence
          Length = 168509

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 105  cagcaaacagctacaaattccagt 128
            |||||||||||||||||| |||||
Sbjct: 1522 cagcaaacagctacaaataccagt 1499
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>gb|AC154288.2| Mus musculus BAC clone RP23-447G10 from 17, complete sequence
          Length = 195195

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 329    agtaggtgaagttcttgagg 348
              ||||||||||||||||||||
Sbjct: 101933 agtaggtgaagttcttgagg 101914
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>gb|AF128273.1|AF128273 Streptomyces griseus putative deoxyhexose reductase (grsB),
           TDP-glucose synthase homolog (grsD), and
           TDP-glucose-4,6-dehydratase homolog (grsE) genes,
           complete cds
          Length = 4062

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 236 gctggtcggggcgtccggcg 255
           ||||||||||||||||||||
Sbjct: 834 gctggtcggggcgtccggcg 815
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>gb|AE003640.4| Drosophila melanogaster chromosome 2L, section 49 of 83 of the complete
              sequence
          Length = 271118

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 39     cgaaaaataaacattacagtatat 62
              |||||||||||||||||| |||||
Sbjct: 195750 cgaaaaataaacattacaatatat 195727
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>emb|CT009575.8| Mouse DNA sequence from clone RP23-107N17 on chromosome 17, complete
             sequence
          Length = 226188

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   agtaggtgaagttcttgagg 348
             ||||||||||||||||||||
Sbjct: 78450 agtaggtgaagttcttgagg 78469
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>dbj|AP004957.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT34H20, TM0134,
             complete sequence
          Length = 132605

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   aagcatgttgttggcgacat 406
             ||||||||||||||||||||
Sbjct: 26776 aagcatgttgttggcgacat 26757
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>emb|AL928574.7| Mouse DNA sequence from clone RP23-332L19 on chromosome 4, complete
             sequence
          Length = 114436

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    aatccattgttatttctttg 34
             ||||||||||||||||||||
Sbjct: 15428 aatccattgttatttctttg 15447


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,586,548
Number of Sequences: 3902068
Number of extensions: 3586548
Number of successful extensions: 77230
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 76759
Number of HSP's gapped (non-prelim): 467
length of query: 452
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 430
effective length of database: 17,147,199,772
effective search space: 7373295901960
effective search space used: 7373295901960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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