ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart13c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYR_DROME (Q9VXN4) Probable arginyl-tRNA synthetase (EC 6.1.1.19... 34 0.086
2AMPO_HUMAN (Q8N6M6) Aminopeptidase O (EC 3.4.11.-) (AP-O) 29 2.8
3NMD3A_HUMAN (Q8TCU5) Glutamate [NMDA] receptor subunit 3A precur... 28 4.7
4AMPN_STRLI (Q11010) Aminopeptidase N (EC 3.4.11.2) (Lysyl aminop... 28 6.1
5HR1A_TRIFL (Q8JIR2) Hemorrhagic metalloproteinase HR1a precursor... 28 8.0

>SYR_DROME (Q9VXN4) Probable arginyl-tRNA synthetase (EC 6.1.1.19)|
           (Arginine--tRNA ligase) (ArgRS)
          Length = 665

 Score = 34.3 bits (77), Expect = 0.086
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = -1

Query: 266 EATAVVMRQCFQLLGITPVYKL 201
           EATA V+RQCF +LG+ PV K+
Sbjct: 644 EATAAVLRQCFYILGLKPVSKM 665



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>AMPO_HUMAN (Q8N6M6) Aminopeptidase O (EC 3.4.11.-) (AP-O)|
          Length = 819

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 37  CYIVVS--RCFSSQMRATDSRVC*GGQLGYKDENCNHGN 147
           C+I V+  R FSS+M   D  +C  G+    D++ NH N
Sbjct: 80  CHIPVTNARTFSSEMEYNDFAICSKGEKDTSDKDGNHDN 118



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>NMD3A_HUMAN (Q8TCU5) Glutamate [NMDA] receptor subunit 3A precursor|
            (N-methyl-D-aspartate receptor subtype NR3A) (NMDAR-L)
          Length = 1115

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 177  KRSNTGQSQLVNWGDPKQLEALSHDDRRRF 266
            KRSN G  QL  W        LSHD+RR++
Sbjct: 1002 KRSNVGPRQLTVWNTSN----LSHDNRRKY 1027



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>AMPN_STRLI (Q11010) Aminopeptidase N (EC 3.4.11.2) (Lysyl aminopeptidase)|
           (Lys-AP) (Alanine aminopeptidase)
          Length = 857

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = +3

Query: 51  FKMLQFSNEGNRLKSMLGGPTRLQGRKL*PWKHAWGET 164
           FK   F N   RL  +LG      GR L  W  AW ET
Sbjct: 413 FKRHAFGN--TRLSDLLGALEETSGRDLKTWSKAWLET 448



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>HR1A_TRIFL (Q8JIR2) Hemorrhagic metalloproteinase HR1a precursor (EC 3.4.24.-)|
           [Contains: Disintegrin-like 1a]
          Length = 609

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -2

Query: 265 KRRRSSCDNASSCLGSPQFTSCDWPVFDLLHHTFVSPQACFHGYSF 128
           + RRS CD A SC G     S D P  D  H    + Q C H + +
Sbjct: 463 RARRSECDIAESCTGH----SADCPT-DRFHR---NGQPCLHNFGY 500


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,278,810
Number of Sequences: 219361
Number of extensions: 787665
Number of successful extensions: 1698
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1698
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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