>gb|BT009240.1| Triticum aestivum clone wlk1.pk0007.f5:fis, full insert mRNA
           sequence
          Length = 1041

 Score =  202 bits (102), Expect = 4e-49
 Identities = 141/154 (91%)
 Strand = Plus / Minus

                                                                       
Query: 113 taggttacaaggacgaaaactgtaaccatggaaacatgcttggggggaaacaaatgtatg 172
           |||||||||||||||||||||||||||||||| ||  ||||| | |||||||||||||||
Sbjct: 814 taggttacaaggacgaaaactgtaaccatggagacgggcttgtgtggaaacaaatgtatg 755

                                                                       
Query: 173 atgtaaaaggtcaaacactggccaatcacagcttgtaaactggggtgatcccaagcagct 232
           |||| || | ||| |||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct: 754 atgtgaaggatcagacactggccaatcacagcatgtaaaccggtgtgatcccaagcagct 695

                                             
Query: 233 ggaagcattgtcgcatgacgaccgccgtcgcttc 266
           ||||||||||||||||||||||| ||||||||||
Sbjct: 694 ggaagcattgtcgcatgacgacccccgtcgcttc 661



 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                    
Query: 16   aaacatgtttcgactatcctttgctacatagtagtttcaa 55
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 aaacatgtttcgactatcctttgctacatagtagtttcaa 968



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 55/61 (90%), Gaps = 3/61 (4%)
 Strand = Plus / Minus

                                                                       
Query: 55  agatgcttcagttctcaaatgagggcaa-ccgactcaagagtatgttaggggggccaact 113
           ||||||||||||||||||||| |||||| | ||||| |||||||||||| || |||||||
Sbjct: 957 agatgcttcagttctcaaatg-gggcaatctgactc-agagtatgttagtggtgccaact 900

            
Query: 114 a 114
           |
Sbjct: 899 a 899

>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0099P06, complete sequence
          Length = 135117

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                         
Query: 195   caatcacagcttgtaaactggggtgatcccaagcagctggaagcattgtcgcatgacgac 254
             ||||||||||||||||||||| || || || |||||||  |||||||||||||| |||||
Sbjct: 59264 caatcacagcttgtaaactggtgtaattccgagcagctcaaagcattgtcgcatcacgac 59205

                        
Query: 255   cgccgtcgctt 265
             |||||||||||
Sbjct: 59204 cgccgtcgctt 59194

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                           
Query: 195     caatcacagcttgtaaactggggtgatcccaagcagctggaagcattgtcgcatgacgac 254
               ||||||||||||||||||||| || || || |||||||  |||||||||||||| |||||
Sbjct: 3636917 caatcacagcttgtaaactggtgtaattccgagcagctcaaagcattgtcgcatcacgac 3636858

                          
Query: 255     cgccgtcgctt 265
               |||||||||||
Sbjct: 3636857 cgccgtcgctt 3636847

>dbj|AK066161.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052F22, full
            insert sequence
          Length = 2136

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                        
Query: 195  caatcacagcttgtaaactggggtgatcccaagcagctggaagcattgtcgcatgacgac 254
            ||||||||||||||||||||| || || || |||||||  |||||||||||||| |||||
Sbjct: 1997 caatcacagcttgtaaactggtgtaattccgagcagctcaaagcattgtcgcatcacgac 1938

                       
Query: 255  cgccgtcgctt 265
            |||||||||||
Sbjct: 1937 cgccgtcgctt 1927

>ref|XM_475642.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1821

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                        
Query: 198  tcacagcttgtaaactggggtgatcccaagcagctggaagcattgtcgcatgacgaccgc 257
            |||||||||||||||||| || || || |||||||  |||||||||||||| ||||||||
Sbjct: 1821 tcacagcttgtaaactggtgtaattccgagcagctcaaagcattgtcgcatcacgaccgc 1762

                    
Query: 258  cgtcgctt 265
            ||||||||
Sbjct: 1761 cgtcgctt 1754

>gb|BT018934.1| Zea mays clone Contig74.F mRNA sequence
          Length = 1069

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                      
Query: 193 gccaatcacagcttgtaaactggggtgatcccaagcagctggaagcattgtcgcatgac 251
           ||||||||||||||||| ||||| |||||||| ||||| | |||||| |||||||||||
Sbjct: 189 gccaatcacagcttgtatactggcgtgatcccgagcaggttgaagcactgtcgcatgac 247

>ref|NM_105324.1| Arabidopsis thaliana ATP binding / arginine-tRNA ligase/ tRNA ligase
            AT1G66530 mRNA, complete cds
          Length = 1991

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                   
Query: 197  atcacagcttgtaaactggggtgatcccaagcagctggaagcattgtcgcatgac 251
            |||| ||||||||||| |||||||| ||||| || ||||||||||  ||||||||
Sbjct: 1839 atcaaagcttgtaaacaggggtgattccaagaaggtggaagcatttccgcatgac 1785

>gb|DQ226705.1| Boechera divaricarpa isolate SLW-A-D02 mRNA sequence
          Length = 407

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                       
Query: 204 cttgtaaactggggtgatcccaagcagctggaagcattgtcgcatgacgaccgccgtcgc 263
           |||||||||||||||||| ||||| || | ||||||||  |||||||| |  ||||||||
Sbjct: 155 cttgtaaactggggtgattccaagaaggtagaagcatttccgcatgactatggccgtcgc 96

              
Query: 264 ttc 266
           |||
Sbjct: 95  ttc 93

>emb|Z98759.1|ATARGSG6 Arabidopsis thaliana gene encoding arginyl-tRNA synthetase, clone G6
          Length = 4431

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                   
Query: 197  atcacagcttgtaaactggggtgatcccaagcagctggaagcattgtcgcatgac 251
            |||| ||||||||||| |||||||| ||||| || ||||||||||  ||||||||
Sbjct: 4018 atcaaagcttgtaaacaggggtgattccaagaaggtggaagcatttccgcatgac 3964

>gb|AF375433.1| Arabidopsis thaliana At1g66530/F28G11_14 mRNA, complete cds
          Length = 1991

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                   
Query: 197  atcacagcttgtaaactggggtgatcccaagcagctggaagcattgtcgcatgac 251
            |||| ||||||||||| |||||||| ||||| || ||||||||||  ||||||||
Sbjct: 1839 atcaaagcttgtaaacaggggtgattccaagaaggtggaagcatttccgcatgac 1785

>gb|AC074025.1|AC074025 Arabidopsis thaliana chromosome 1 BAC F28G11 genomic sequence, complete
             sequence
          Length = 63773

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                    
Query: 197   atcacagcttgtaaactggggtgatcccaagcagctggaagcattgtcgcatgac 251
             |||| ||||||||||| |||||||| ||||| || ||||||||||  ||||||||
Sbjct: 16952 atcaaagcttgtaaacaggggtgattccaagaaggtggaagcatttccgcatgac 16898

>gb|AY093956.1| Arabidopsis thaliana At1g66530/F28G11_14 mRNA, complete cds
          Length = 1773

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 202  agcttgtaaactggggtgatcccaagcagctggaagcattgtcgcatgac 251
            ||||||||||| |||||||| ||||| || ||||||||||  ||||||||
Sbjct: 1769 agcttgtaaacaggggtgattccaagaaggtggaagcatttccgcatgac 1720

>gb|AY110028.1| Zea mays CL302_1 mRNA sequence
          Length = 1651

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 197 atcacagcttgtaaactggggtgatccc 224
           ||||||||||||| ||||||||||||||
Sbjct: 976 atcacagcttgtagactggggtgatccc 949

>gb|AC153694.1| Mus musculus  BAC RP23-333I12 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 208414

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 188    cactggccaatcacagcttgt 208
              |||||||||||||||||||||
Sbjct: 114892 cactggccaatcacagcttgt 114872

>ref|XM_636429.1| Dictyostelium discoideum hypothetical protein (DDB0218196), partial
            mRNA
          Length = 3920

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 164  aaatgtatgatgtaaaaggtcaaa 187
            ||||||||| ||||||||||||||
Sbjct: 3874 aaatgtatgttgtaaaaggtcaaa 3897

>ref|XM_517761.1| PREDICTED: Pan troglodytes similar to uracil-DNA glycosylase 2
           (LOC461871), mRNA
          Length = 1247

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 216 ggtgatcccaagcagctggaagca 239
           ||||| ||||||||||||||||||
Sbjct: 737 ggtgaccccaagcagctggaagca 714

>gb|AC107230.8| Mus musculus chromosome 18, clone RP23-238L23, complete sequence
          Length = 192286

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   aaactgtaaccatggaaaca 148
             ||||||||||||||||||||
Sbjct: 42280 aaactgtaaccatggaaaca 42261

>ref|NM_001024592.1| Homo sapiens uracil-DNA glycosylase 2 (UNG2), transcript variant 2,
           mRNA
          Length = 1741

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 216 ggtgatcccaagcagctggaagca 239
           ||||| ||||||||||||||||||
Sbjct: 993 ggtgaccccaagcagctggaagca 970

>ref|NM_021147.2| Homo sapiens uracil-DNA glycosylase 2 (UNG2), transcript variant 1,
           mRNA
          Length = 1448

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 216 ggtgatcccaagcagctggaagca 239
           ||||| ||||||||||||||||||
Sbjct: 700 ggtgaccccaagcagctggaagca 677

>emb|AL161629.10| Human DNA sequence from clone RP11-406A20 on chromosome 9q21.33-22.2
             Contains two novel genes and a  interleukin 6 receptor
             (IL6R) pseudogene, complete sequence
          Length = 160341

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    tcctttgctacatagtagtt 51
             ||||||||||||||||||||
Sbjct: 57139 tcctttgctacatagtagtt 57158

>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29
          Length = 292200

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 244    cgcatgacgaccgccgtcgc 263
              ||||||||||||||||||||
Sbjct: 181070 cgcatgacgaccgccgtcgc 181051

>emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in linkage group 3,
             complete sequence
          Length = 241961

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   aaactgtaaccatggaaaca 148
             ||||||||||||||||||||
Sbjct: 85694 aaactgtaaccatggaaaca 85713

>gb|AC016868.8| Homo sapiens chromosome 8, clone RP11-15G16, complete sequence
          Length = 155691

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 64     agttctcaaatgagggcaac 83
              ||||||||||||||||||||
Sbjct: 121172 agttctcaaatgagggcaac 121153

>gb|AC091977.3| Homo sapiens chromosome 5 clone RP11-528L24, complete sequence
          Length = 183494

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 216    ggtgatcccaagcagctggaagca 239
              ||||| ||||||||||||||||||
Sbjct: 182982 ggtgaccccaagcagctggaagca 183005

>gb|BC004877.2| Homo sapiens uracil-DNA glycosylase 2, mRNA (cDNA clone
           IMAGE:3688593)
          Length = 1741

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 216 ggtgatcccaagcagctggaagca 239
           ||||| ||||||||||||||||||
Sbjct: 993 ggtgaccccaagcagctggaagca 970

>gb|AC026704.5| Homo sapiens chromosome 5 clone CTD-2036P8, complete sequence
          Length = 89677

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 216   ggtgatcccaagcagctggaagca 239
             ||||| ||||||||||||||||||
Sbjct: 53345 ggtgaccccaagcagctggaagca 53368

>gb|BC056254.1| Homo sapiens uracil-DNA glycosylase 2, mRNA (cDNA clone
           IMAGE:4667525), containing frame-shift errors
          Length = 1332

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 216 ggtgatcccaagcagctggaagca 239
           ||||| ||||||||||||||||||
Sbjct: 576 ggtgaccccaagcagctggaagca 553

>gb|BC017345.2| Homo sapiens uracil-DNA glycosylase 2, mRNA (cDNA clone
           IMAGE:5016010), containing frame-shift errors
          Length = 1361

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 216 ggtgatcccaagcagctggaagca 239
           ||||| ||||||||||||||||||
Sbjct: 607 ggtgaccccaagcagctggaagca 584

>gb|AC127464.3| Ornithorhynchus anatinus clone OA_Bb-383O11, complete sequence
          Length = 161148

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 216   ggtgatcccaagcagctggaagca 239
             |||||||||| |||||||||||||
Sbjct: 50203 ggtgatcccaggcagctggaagca 50226

>gb|AC020728.4|AC020728 Homo sapiens BAC clone RP11-506H20 from 5, complete sequence
          Length = 201404

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 216  ggtgatcccaagcagctggaagca 239
            ||||| ||||||||||||||||||
Sbjct: 1273 ggtgaccccaagcagctggaagca 1296

>dbj|AK026075.1| Homo sapiens cDNA: FLJ22422 fis, clone HRC08651
          Length = 1448

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 216 ggtgatcccaagcagctggaagca 239
           ||||| ||||||||||||||||||
Sbjct: 700 ggtgaccccaagcagctggaagca 677

>emb|AL844168.5| Mouse DNA sequence from clone RP23-413G9 on chromosome 4, complete
              sequence
          Length = 143572

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 54     aagatgcttcagttctcaaatgagggca 81
              |||||||||||||| | |||||||||||
Sbjct: 104010 aagatgcttcagttttaaaatgagggca 104037

>gb|M87499.1|HUMURAGLY Human uracil-DNA glycosylase (UNG) gene, complete cds
          Length = 3131

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 216  ggtgatcccaagcagctggaagca 239
            ||||| ||||||||||||||||||
Sbjct: 1889 ggtgaccccaagcagctggaagca 1866

>emb|AL731682.20| Mouse DNA sequence from clone RP23-123F7 on chromosome 2, complete
              sequence
          Length = 201290

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    cactggccaatcacagcttg 207
              ||||||||||||||||||||
Sbjct: 173309 cactggccaatcacagcttg 173328

>emb|X52486.1|HSUDGM Human mRNA for uracil-DNA glycosylase
          Length = 1224

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 216 ggtgatcccaagcagctggaagca 239
           ||||| ||||||||||||||||||
Sbjct: 507 ggtgaccccaagcagctggaagca 484


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,973,291
Number of Sequences: 3902068
Number of extensions: 1973291
Number of successful extensions: 47485
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47423
Number of HSP's gapped (non-prelim): 61
length of query: 266
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 244
effective length of database: 17,147,199,772
effective search space: 4183916744368
effective search space used: 4183916744368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)