ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart13c02 |
|---|---|
| Clone Library Name | barley_pub |
>CY561_SHEEP (Q95204) Cytochrome b561 (Cytochrome b-561)| Length = 252 Score = 42.7 bits (99), Expect = 5e-04 Identities = 21/58 (36%), Positives = 32/58 (55%) Frame = -1 Query: 479 FPGAAPDVRRGALPWHALFGLFVYVLTLATAELGFLEKMTFLQSSGLDKYGPEALLVN 306 FPGA+ +R P H FG +++L++ATA LG E + F + + PE +L N Sbjct: 146 FPGASFSLRSRYRPQHVFFGAAIFLLSVATALLGLKEALLFELGTKYSTFEPEGVLAN 203
>CY561_BOVIN (P10897) Cytochrome b561 (Cytochrome b-561)| Length = 252 Score = 42.7 bits (99), Expect = 5e-04 Identities = 21/58 (36%), Positives = 32/58 (55%) Frame = -1 Query: 479 FPGAAPDVRRGALPWHALFGLFVYVLTLATAELGFLEKMTFLQSSGLDKYGPEALLVN 306 FPGA+ +R P H FG +++L++ATA LG E + F + + PE +L N Sbjct: 146 FPGASFSLRSRYRPQHVFFGAAIFLLSVATALLGLKEALLFELGTKYSMFEPEGVLAN 203
>CY561_MOUSE (Q60720) Cytochrome b561 (Cytochrome b-561)| Length = 250 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/58 (34%), Positives = 30/58 (51%) Frame = -1 Query: 479 FPGAAPDVRRGALPWHALFGLFVYVLTLATAELGFLEKMTFLQSSGLDKYGPEALLVN 306 FPGA+ +R P H FG +++ ++ TA LG E + F S + PE +L N Sbjct: 144 FPGASFSLRSRYRPQHIFFGATIFLFSVGTALLGLKEALLFKLGSKYSTFEPEGVLAN 201
>CY561_PONPY (Q5RCZ2) Cytochrome b561 (Cytochrome b-561)| Length = 251 Score = 40.4 bits (93), Expect = 0.002 Identities = 20/58 (34%), Positives = 30/58 (51%) Frame = -1 Query: 479 FPGAAPDVRRGALPWHALFGLFVYVLTLATAELGFLEKMTFLQSSGLDKYGPEALLVN 306 FPGA+ +R P H FG +++L++ TA LG E + F + PE +L N Sbjct: 145 FPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFKLRDKYSAFEPEGVLAN 202
>CY561_HUMAN (P49447) Cytochrome b561 (Cytochrome b-561)| Length = 251 Score = 40.4 bits (93), Expect = 0.002 Identities = 20/58 (34%), Positives = 30/58 (51%) Frame = -1 Query: 479 FPGAAPDVRRGALPWHALFGLFVYVLTLATAELGFLEKMTFLQSSGLDKYGPEALLVN 306 FPGA+ +R P H FG +++L++ TA LG E + F + PE +L N Sbjct: 145 FPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLFNLGGKYSAFEPEGVLAN 202
>CY561_PIG (Q95245) Cytochrome b561 (Cytochrome b-561)| Length = 252 Score = 38.5 bits (88), Expect = 0.009 Identities = 19/58 (32%), Positives = 30/58 (51%) Frame = -1 Query: 479 FPGAAPDVRRGALPWHALFGLFVYVLTLATAELGFLEKMTFLQSSGLDKYGPEALLVN 306 FPGA+ +R P H FG +++L++ TA LG E + F + + E +L N Sbjct: 146 FPGASFSLRSRYRPQHVFFGAAIFLLSVGTALLGLKEALLFQLGTKYSAFESEGVLAN 203
>CY561_CAEEL (P34465) Putative cytochrome b561 (Cytochrome b-561)| Length = 266 Score = 35.0 bits (79), Expect = 0.10 Identities = 12/39 (30%), Positives = 23/39 (58%) Frame = -1 Query: 482 FFPGAAPDVRRGALPWHALFGLFVYVLTLATAELGFLEK 366 FFPG +R+ +P+H +FG+ +++ T +G E+ Sbjct: 162 FFPGMPIPIRQLVMPFHQMFGVLIFIFVSITVAMGISER 200
>CY561_XENLA (Q91577) Cytochrome b561 (Cytochrome b-561)| Length = 247 Score = 34.3 bits (77), Expect = 0.18 Identities = 22/59 (37%), Positives = 30/59 (50%) Frame = -1 Query: 482 FFPGAAPDVRRGALPWHALFGLFVYVLTLATAELGFLEKMTFLQSSGLDKYGPEALLVN 306 F PG A R P H FG +++ ++AT+ LG EKM SS + E +LVN Sbjct: 144 FIPGVAFTYRSQFKPLHEFFGRALFLSSIATSLLGLTEKMFSEYSS----HPAEGILVN 198
>STA5A_SHEEP (P42231) Signal transducer and activator of transcription 5A| (Mammary gland factor) Length = 794 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 Query: 46 RTVQLIHTNQT*ILCSPPISWNQSHTWSLLEQTRRS 153 +T+QL+ QT IL I W + H W +E RS Sbjct: 236 KTLQLLRKQQTIILDDELIQWKRRHDWRGMEAPPRS 271
>CBIO1_MYCMS (Q6MSQ2) Cobalt import ATP-binding protein cbiO 1| Length = 303 Score = 29.3 bits (64), Expect = 5.7 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%) Frame = -2 Query: 142 FVPRETTCVIGSTRSGVST--EFTSGLCVS 59 F + TCVIG+T SG ST + T+GL +S Sbjct: 48 FKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 77
>CCPR_YARLI (Q6C0Z6) Cytochrome c peroxidase, mitochondrial precursor (EC| 1.11.1.5) (CCP) Length = 340 Score = 28.9 bits (63), Expect = 7.5 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +3 Query: 96 PDLVEPITHVVSLGTNQTFNNQQHVALYGTRLL 194 PD + THV ++ Q FN+Q+ VAL G L Sbjct: 194 PDASQGATHVRNVFNRQGFNDQEMVALIGAHAL 226
>CDR4_CANAL (O74676) ABC transporter CDR4| Length = 1490 Score = 28.9 bits (63), Expect = 7.5 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -1 Query: 455 RRGALPWHALFGLFVYVLTLATAELGFLE 369 +RGA W A+ F+Y TLA + FLE Sbjct: 1300 QRGAFMWFAIVLFFIYTSTLAQLCISFLE 1328
>ENV_HV2RO (P04577) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 858 Score = 28.5 bits (62), Expect = 9.7 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +2 Query: 68 QTRREFCAHPRSRGTNHTRGLSWNKP 145 + + HPR RGTN TR +S+ P Sbjct: 352 EVKETLAKHPRYRGTNDTRNISFAAP 377
>CBIO2_MESFL (Q6F1W4) Cobalt import ATP-binding protein cbiO 2| Length = 315 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 2/27 (7%) Frame = -2 Query: 133 RETTCVIGSTRSGVST--EFTSGLCVS 59 ++ TCVIG+T SG ST + T+GL +S Sbjct: 61 KKITCVIGTTGSGKSTMIQLTNGLLIS 87
>CBIO2_SPIKU (Q6XYZ3) Cobalt import ATP-binding protein cbiO 2| Length = 305 Score = 28.5 bits (62), Expect = 9.7 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = -2 Query: 193 SSLVPYRATCC*LLNVWFVPRETTCVIGSTRSGVST 86 S PY T +NV P + T +IGST SG ST Sbjct: 28 SPKTPYEYTSLQDINVVIKPGKITAIIGSTGSGKST 63 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,641,461 Number of Sequences: 219361 Number of extensions: 836174 Number of successful extensions: 2514 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2480 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2514 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
