ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart13b12 |
|---|---|
| Clone Library Name | barley_pub |
>Y737_DROME (P83475) Hypothetical protein CG31737 in chromosome 2| Length = 263 Score = 35.0 bits (79), Expect = 0.10 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Frame = -2 Query: 459 RGQRARPEDDRAGRATPFPRRHQCR--RGVPRPAPGSSPDQGGGLE 328 RG R P G PRR+ C RG P P PD GGGL+ Sbjct: 189 RGPRGYPGPGPRGYPGQGPRRYSCPGPRGYPGPGSSGRPDPGGGLQ 234
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2158 Score = 31.2 bits (69), Expect = 1.4 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Frame = -2 Query: 474 GHEEERGQRARPEDDRAGRATPF--PRRHQCRRGVPRPAPGSSPDQGGGLE 328 G + RG + P R R PR CRRG+P PG P + G ++ Sbjct: 902 GRKPARGGQGPPPPRRENRTETRWGPRPGSCRRGIPPEEPGVPPRRAGPIK 952
>IF2_MYCTU (P65131) Translation initiation factor IF-2| Length = 900 Score = 30.4 bits (67), Expect = 2.5 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = -2 Query: 432 DRAGRATPFPRRHQCRRGVPRP--APGSSPDQGGG 334 DR P PR R GVPRP +PGS P + GG Sbjct: 164 DRPIPRPPAPRPGTARPGVPRPGASPGSMPPRPGG 198
>IF2_MYCBO (P65132) Translation initiation factor IF-2| Length = 900 Score = 30.4 bits (67), Expect = 2.5 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = -2 Query: 432 DRAGRATPFPRRHQCRRGVPRP--APGSSPDQGGG 334 DR P PR R GVPRP +PGS P + GG Sbjct: 164 DRPIPRPPAPRPGTARPGVPRPGASPGSMPPRPGG 198
>MYOB_DICDI (P34092) Myosin IB heavy chain| Length = 1111 Score = 30.4 bits (67), Expect = 2.5 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -2 Query: 468 EEERGQRARPEDDRAGRATPFPRRHQCRRGVPRPAP--GSSPDQGGG 334 + ++ QR P+ + G A P P+ Q P AP G +P QG G Sbjct: 960 QPQQQQRPMPQPQQGGGARPMPQPQQGGGARPMGAPQQGGAPQQGAG 1006
>SSB_PSEPK (Q88QK5) Single-stranded DNA-binding protein (SSB)| (Helix-destabilizing protein) Length = 181 Score = 30.0 bits (66), Expect = 3.2 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = -2 Query: 225 KGRRSSGYIYDHGGKNGGRVADQQRKLQPARLQWQRPKE 109 +G++ G Y+ GG N G QQ P R Q QRP++ Sbjct: 116 QGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQ 154
>THIC_RHOPA (P61427) Thiamine biosynthesis protein thiC| Length = 666 Score = 29.6 bits (65), Expect = 4.2 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%) Frame = -2 Query: 477 GGHEEERGQRARPEDD----RAGRATPFPRRHQCRRGVPRPAPGSSPDQGGG 334 GG E+ +G+ +PED+ A A F HQ RG+ P P GG Sbjct: 87 GGVEQYQGRDIKPEDNGNVGAAHAAKAFTAHHQPLRGLDSPPPRGEGSGVGG 138
>NU2M_MYOKI (Q2TQ13) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 347 Score = 29.3 bits (64), Expect = 5.5 Identities = 15/28 (53%), Positives = 16/28 (57%) Frame = +1 Query: 379 TTTTLMSSWKWRRTPRSIVLRSCTLTSL 462 TTTTL S W +TP VL TL SL Sbjct: 224 TTTTLSLSLTWNKTPLMTVLMMTTLLSL 251
>INCC1_ECOLI (Q52312) Protein incC| Length = 358 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 5/52 (9%) Frame = -2 Query: 471 HEEERGQRARPEDDRAGRATPFPRRHQCRRGVPRPAPG-----SSPDQGGGL 331 HEE + P+ + RH RR PAPG + DQGGG+ Sbjct: 5 HEETANRSPIPDGHQGAGDRAADHRHSARRAGRWPAPGGVCHFAGADQGGGV 56
>AROC_LISMO (Q8Y5X5) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 388 Score = 28.9 bits (63), Expect = 7.2 Identities = 19/84 (22%), Positives = 32/84 (38%) Frame = -2 Query: 411 PFPRRHQCRRGVPRPAPGSSPDQGGGLEXXXXXXXXXXXXXXXXXPVGAATAGLP*LRLI 232 P P +++ R V RP PG + D GG++ AG +L+ Sbjct: 92 PVPEKNEKSRRVSRPRPGHA-DLVGGMKYGHNDMRNVLERSSARETTVRVAAGAVAKKLL 150 Query: 231 DQKGRRSSGYIYDHGGKNGGRVAD 160 + G +G++ + GG D Sbjct: 151 HELGIEVAGHVLEIGGTRANLTRD 174
>AROC_LISMF (Q71Y87) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 388 Score = 28.9 bits (63), Expect = 7.2 Identities = 19/84 (22%), Positives = 32/84 (38%) Frame = -2 Query: 411 PFPRRHQCRRGVPRPAPGSSPDQGGGLEXXXXXXXXXXXXXXXXXPVGAATAGLP*LRLI 232 P P +++ R V RP PG + D GG++ AG +L+ Sbjct: 92 PVPEKNEKSRRVSRPRPGHA-DLVGGMKYGHNDMRNVLERSSARETTVRVAAGAVAKKLL 150 Query: 231 DQKGRRSSGYIYDHGGKNGGRVAD 160 + G +G++ + GG D Sbjct: 151 HELGIEVAGHVLEIGGTRANLTRD 174
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2161 Score = 28.5 bits (62), Expect = 9.4 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 20/67 (29%) Frame = -2 Query: 468 EEERGQRARPEDDR--------AGRATPFPRRHQ------------CRRGVPRPAPGSSP 349 +EE Q + PE R G+ P PRR CRRG+P PG P Sbjct: 891 KEEPAQLSGPEAGRKPARGVGGGGQGPPPPRRENRTETRWGPRPGSCRRGIPPEDPGVPP 950 Query: 348 DQGGGLE 328 + G ++ Sbjct: 951 RRAGPIK 957
>PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing protein| phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat protein phosphatase) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory Length = 1687 Score = 28.5 bits (62), Expect = 9.4 Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Frame = -2 Query: 477 GGHEEERGQRARPEDDRAGRATPFPRRHQCRRGVPRPAPGSS---PDQGGG 334 GG E P GRA RR RRG P+PA G + P GGG Sbjct: 47 GGAAREEAPCEAPPGPLPGRAGGTGRRR--RRGAPQPAAGGAAPVPAAGGG 95
>DNAA_STRCO (P27902) Chromosomal replication initiator protein dnaA| Length = 656 Score = 28.5 bits (62), Expect = 9.4 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = -2 Query: 477 GGHEEERGQRARPEDDRAGRATPFPRRHQCRRGVPRPAPGSSPDQGGG 334 G +E+ RG +P D + + +R RR +P P PGS GG Sbjct: 240 GEYEQPRGDYDKPRGDYDQQRGDYDQRGP-RRDLPEPPPGSGHVHRGG 286 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,914,636 Number of Sequences: 219361 Number of extensions: 1064363 Number of successful extensions: 3233 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3085 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3228 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
