ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart13b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC124398.4| Mus musculus BAC clone RP24-349M24 from chromosom... 40 0.92
2emb|AL355384.6| Human DNA sequence from clone RP11-626C11 on chr... 40 0.92
3ref|XM_710738.1| Candida albicans SC5314 putative aquaporin wate... 38 3.6
4ref|XM_710687.1| Candida albicans SC5314 putative aquaporin wate... 38 3.6
5gb|AC024827.2| Caenorhabditis elegans cosmid Y55F3AR, complete s... 38 3.6
6gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 38 3.6
7gb|AC148527.20| Medicago truncatula clone mth2-49g13, complete s... 38 3.6
8emb|BX537152.15| Zebrafish DNA sequence from clone DKEY-61N7 in ... 38 3.6
9gb|AC115062.13| Mus musculus chromosome 3, clone RP24-399B3, com... 38 3.6
10emb|AL928691.7| Zebrafish DNA sequence from clone CH211-51H20 in... 38 3.6
11emb|AL928662.5| Mouse DNA sequence from clone RP23-379M5 on chro... 38 3.6

>gb|AC124398.4| Mus musculus BAC clone RP24-349M24 from chromosome 12, complete sequence
          Length = 176369

 Score = 40.1 bits (20), Expect = 0.92
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 60     tttttggacaaaagcacggagaat 83
              |||||||||||||||| |||||||
Sbjct: 125372 tttttggacaaaagcaaggagaat 125395



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>emb|AL355384.6| Human DNA sequence from clone RP11-626C11 on chromosome 10 Contains a
             CpG island, complete sequence
          Length = 159305

 Score = 40.1 bits (20), Expect = 0.92
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    ggggacatcaatcaactttt 62
             ||||||||||||||||||||
Sbjct: 23045 ggggacatcaatcaactttt 23064



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>ref|XM_710738.1| Candida albicans SC5314 putative aquaporin water channel protein
           (CaO19_10368), mRNA
          Length = 822

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 6   gaaatcacaaccaattgcattggatca 32
           ||||||| || ||||||||||||||||
Sbjct: 248 gaaatcataatcaattgcattggatca 222



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>ref|XM_710687.1| Candida albicans SC5314 putative aquaporin water channel protein
           (CaO19_2849), mRNA
          Length = 822

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 6   gaaatcacaaccaattgcattggatca 32
           ||||||| || ||||||||||||||||
Sbjct: 248 gaaatcataatcaattgcattggatca 222



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>gb|AC024827.2| Caenorhabditis elegans cosmid Y55F3AR, complete sequence
          Length = 17122

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 54    tcaacttttttggacaaaa 72
             |||||||||||||||||||
Sbjct: 11682 tcaacttttttggacaaaa 11664



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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     ttgcattggatcaagtcga 38
              |||||||||||||||||||
Sbjct: 376678 ttgcattggatcaagtcga 376660



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>gb|AC148527.20| Medicago truncatula clone mth2-49g13, complete sequence
          Length = 107439

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 48    catcaatcaacttttttgg 66
             |||||||||||||||||||
Sbjct: 61097 catcaatcaacttttttgg 61115



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>emb|BX537152.15| Zebrafish DNA sequence from clone DKEY-61N7 in linkage group 14, complete
              sequence
          Length = 243729

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 47     acatcaatcaacttttttg 65
              |||||||||||||||||||
Sbjct: 175677 acatcaatcaacttttttg 175659



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>gb|AC115062.13| Mus musculus chromosome 3, clone RP24-399B3, complete sequence
          Length = 198727

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 55    caacttttttggacaaaag 73
             |||||||||||||||||||
Sbjct: 82834 caacttttttggacaaaag 82852



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>emb|AL928691.7| Zebrafish DNA sequence from clone CH211-51H20 in linkage group 14,
              complete sequence
          Length = 167320

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     acatcaatcaacttttttg 65
              |||||||||||||||||||
Sbjct: 144430 acatcaatcaacttttttg 144448



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>emb|AL928662.5| Mouse DNA sequence from clone RP23-379M5 on chromosome 2, complete
             sequence
          Length = 116419

 Score = 38.2 bits (19), Expect = 3.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 57    acttttttggacaaaagca 75
             |||||||||||||||||||
Sbjct: 99789 acttttttggacaaaagca 99807


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 603,854
Number of Sequences: 3902068
Number of extensions: 603854
Number of successful extensions: 42689
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42665
Number of HSP's gapped (non-prelim): 24
length of query: 86
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 65
effective length of database: 17,151,101,840
effective search space: 1114821619600
effective search space used: 1114821619600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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