Clone Name | rbart13b09 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inhibitor protein I (xipI gene) Length = 915 Score = 285 bits (144), Expect = 6e-74 Identities = 156/160 (97%) Strand = Plus / Minus Query: 297 tcaggcgtagtacttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtccca 356 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 915 tcaggcgtagtacttgatcaagctgctgtagttggtctgcttgtcgaagtatcggtccca 856 Query: 357 gagcatgatgccgccgtagttgtccttcttctgcgacaccggcgcgacgctgtagtagac 416 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct: 855 gagcatgatgccgccgtagttgtccttcttctgcgccaccggcgcgacgccgtagtagac 796 Query: 417 gttcttggggtgtacccactggtaggacttgtcgtccgcc 456 ||||||||||||||||||||||| |||||||||||||||| Sbjct: 795 gttcttggggtgtacccactggtgggacttgtcgtccgcc 756
>dbj|AB204556.1| Triticum aestivum Xip-III gene for xylanase inhibitor XIP-III, complete cds Length = 934 Score = 182 bits (92), Expect = 7e-43 Identities = 140/156 (89%) Strand = Plus / Minus Query: 297 tcaggcgtagtacttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtccca 356 |||||||||||||||||| |||| ||||||| | |||||||||||||||| |||||||| Sbjct: 932 tcaggcgtagtacttgatgtagctactgtagtcgctctgcttgtcgaagtatcggtccca 873 Query: 357 gagcatgatgccgccgtagttgtccttcttctgcgacaccggcgcgacgctgtagtagac 416 |||||||| |||||||||||||||||||||||| |||||||| || || ||||||||| Sbjct: 872 gagcatgaccccgccgtagttgtccttcttctgcaccaccggcgtgatgccgtagtagac 813 Query: 417 gttcttggggtgtacccactggtaggacttgtcgtc 452 |||||||||||||| ||||||||| ||||| ||||| Sbjct: 812 gttcttggggtgtatccactggtacgacttctcgtc 777
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 101 bits (51), Expect = 2e-18 Identities = 108/127 (85%) Strand = Plus / Plus Query: 309 cttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtcccagagcatgatgcc 368 ||||| || |||| |||||||| || |||||||| |||| |||||||||| ||||| ||| Sbjct: 14484656 cttgaccatgctggtgtagttgctcagcttgtcgtagtatcggtcccagatcatgaagcc 14484715 Query: 369 gccgtagttgtccttcttctgcgacaccggcgcgacgctgtagtagacgttcttggggtg 428 ||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| Sbjct: 14484716 gccgtagttgtccgccttctgcgtggacggggcgacgtcgtagtagacgttcttggggtg 14484775 Query: 429 tacccac 435 |||||| Sbjct: 14484776 cacccac 14484782
>dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021M10 Length = 163416 Score = 101 bits (51), Expect = 2e-18 Identities = 108/127 (85%) Strand = Plus / Plus Query: 309 cttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtcccagagcatgatgcc 368 ||||| || |||| |||||||| || |||||||| |||| |||||||||| ||||| ||| Sbjct: 77830 cttgaccatgctggtgtagttgctcagcttgtcgtagtatcggtcccagatcatgaagcc 77889 Query: 369 gccgtagttgtccttcttctgcgacaccggcgcgacgctgtagtagacgttcttggggtg 428 ||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| Sbjct: 77890 gccgtagttgtccgccttctgcgtggacggggcgacgtcgtagtagacgttcttggggtg 77949 Query: 429 tacccac 435 |||||| Sbjct: 77950 cacccac 77956
>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence Length = 179668 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 330 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 377 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 82293 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 82246 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 336 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 378 ||||||| |||| || ||||||||||||| ||||||||||||| Sbjct: 88121 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 88163 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 338 tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 378 ||||||||| |||| |||||||| || ||||||||||||| Sbjct: 83663 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 83703
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 330 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 377 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 28123738 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 28123691 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 336 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 378 ||||||| |||| || ||||||||||||| ||||||||||||| Sbjct: 28129566 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 28129608 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 338 tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 378 ||||||||| |||| |||||||| || ||||||||||||| Sbjct: 28125108 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 28125148
>dbj|AK102862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111J19, full insert sequence Length = 1176 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 330 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 377 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 988 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 941
>dbj|AK063939.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-E01, full insert sequence Length = 1234 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 330 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 377 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 989 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 942
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 330 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 377 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 28108616 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 28108569 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 336 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 378 ||||||| |||| || ||||||||||||| ||||||||||||| Sbjct: 28114444 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 28114486 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 338 tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 378 ||||||||| |||| |||||||| || ||||||||||||| Sbjct: 28109986 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 28110026
>dbj|D55712.1| Oryza sativa (japonica cultivar-group) mRNA for chitinase, complete cds Length = 1220 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 330 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 377 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 963 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 916
>dbj|AB027420.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a), complete cds, clone:C60571 Length = 1220 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 330 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 377 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 975 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 928
>dbj|AB027419.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a), complete cds, clone:C11701 Length = 1171 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 330 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 377 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 933 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 886
>dbj|AB027418.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a), complete cds, clone:C12269 Length = 1214 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 330 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 377 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 973 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 926
>dbj|AB027417.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a), complete cds, clone:C3540 Length = 1229 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 330 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 377 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 972 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 925
>dbj|AB027416.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a), complete cds,clone:C10295 Length = 1199 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 330 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 377 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 954 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 907
>dbj|AB027415.1| Oryza sativa (japonica cultivar-group) mRNA for class III chitinase homologue (OsChib3H-a)H-, complete cds, clone:C60129 Length = 1187 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 330 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 377 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 957 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 910
>dbj|AK102649.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101A20, full insert sequence Length = 1162 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 336 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 378 ||||||| |||| || ||||||||||||| ||||||||||||| Sbjct: 927 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 885
>dbj|AK101155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027E14, full insert sequence Length = 1193 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 336 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 378 ||||||| |||| || ||||||||||||| ||||||||||||| Sbjct: 931 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 889
>dbj|AK073595.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048M21, full insert sequence Length = 1153 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 336 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 378 ||||||| |||| || ||||||||||||| ||||||||||||| Sbjct: 918 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 876
>ref|NM_193094.1| Oryza sativa (japonica cultivar-group), mRNA Length = 951 Score = 48.1 bits (24), Expect = 0.025 Identities = 57/68 (83%) Strand = Plus / Minus Query: 332 tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtccttcttctgcg 391 ||||||||||| ||| || ||||||| ||||| ||||||||||||| || ||||||| Sbjct: 916 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttggccgccttctgca 857 Query: 392 acaccggc 399 || ||||| Sbjct: 856 actccggc 849
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 48.1 bits (24), Expect = 0.025 Identities = 57/68 (83%) Strand = Plus / Minus Query: 332 tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtccttcttctgcg 391 ||||||||||| ||| || ||||||| ||||| ||||||||||||| || ||||||| Sbjct: 26162477 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttggccgccttctgca 26162418 Query: 392 acaccggc 399 || ||||| Sbjct: 26162417 actccggc 26162410
>dbj|AK111717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022A01, full insert sequence Length = 1165 Score = 48.1 bits (24), Expect = 0.025 Identities = 57/68 (83%) Strand = Plus / Minus Query: 332 tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtccttcttctgcg 391 ||||||||||| ||| || ||||||| ||||| ||||||||||||| || ||||||| Sbjct: 964 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttggccgccttctgca 905 Query: 392 acaccggc 399 || ||||| Sbjct: 904 actccggc 897
>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0519E12 Length = 152448 Score = 48.1 bits (24), Expect = 0.025 Identities = 57/68 (83%) Strand = Plus / Minus Query: 332 tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtccttcttctgcg 391 ||||||||||| ||| || ||||||| ||||| ||||||||||||| || ||||||| Sbjct: 54335 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttggccgccttctgca 54276 Query: 392 acaccggc 399 || ||||| Sbjct: 54275 actccggc 54268
>ref|XM_792322.1| PREDICTED: Strongylocentrotus purpuratus similar to putative endoplasmic reticulum protein, with at least 5 transmembrane domains, of eukaryotic origin (56.3 kD) (4P439) (LOC592817), mRNA Length = 1917 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 319 ctgctgtagttggtctgcttgt 340 |||||||||||||||||||||| Sbjct: 86 ctgctgtagttggtctgcttgt 107
>gb|S82314.1| PRm 3=chitinase {clone CHEM 5} [Zea mays=maize, cv. INRA 258, mercuric chloride-treated, leaves, mRNA Partial, 945 nt] Length = 945 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 349 cggtcccagagcatgatgccgccgtagttg 378 |||||||| | ||||||||||||||||||| Sbjct: 870 cggtcccacaccatgatgccgccgtagttg 841
>gb|AY107125.1| Zea mays PCO125117 mRNA sequence Length = 1252 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 349 cggtcccagagcatgatgccgccgtagttg 378 |||||||| | ||||||||||||||||||| Sbjct: 928 cggtcccacaccatgatgccgccgtagttg 899
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 190 attattatttttatttatcca 210 ||||||||||||||||||||| Sbjct: 9296566 attattatttttatttatcca 9296586
>emb|CR661974.2|CNS0F9R0 Tetraodon nigroviridis full-length cDNA Length = 1323 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 tattatttttatttatccaag 212 ||||||||||||||||||||| Sbjct: 1059 tattatttttatttatccaag 1079
>emb|AL590608.6| Human DNA sequence from clone RP11-363F12 on chromosome 6, complete sequence Length = 200337 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 attattatttttatttatcca 210 ||||||||||||||||||||| Sbjct: 75724 attattatttttatttatcca 75704
>emb|CR378665.1| Photobacterium profundum SS9; segment 3/12 Length = 347213 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 attattatttttatttatcca 210 ||||||||||||||||||||| Sbjct: 55388 attattatttttatttatcca 55368
>gb|AC129928.3| Homo sapiens chromosome 8, clone RP11-1112C19, complete sequence Length = 141478 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 caattattatttttatttatc 208 ||||||||||||||||||||| Sbjct: 106374 caattattatttttatttatc 106394
>emb|BX537141.17| Zebrafish DNA sequence from clone DKEY-9E8 in linkage group 2, complete sequence Length = 264534 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 190 attattatttttatttatccaagta 214 |||||||||||||||||| |||||| Sbjct: 242608 attattatttttatttattcaagta 242584
>gb|AF233490.1|AF233490 Brachystegia zenkeri chloroplast trnL-trnF intergenic spacer region Length = 566 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 aactacaaataaaaagacgaa 103 ||||||||||||||||||||| Sbjct: 477 aactacaaataaaaagacgaa 457
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 190 attattatttttatttatcca 210 ||||||||||||||||||||| Sbjct: 9294399 attattatttttatttatcca 9294419
>gb|AC137698.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0014A21, from chromosome 3, complete sequence Length = 134014 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 attattatttttatttatcca 210 ||||||||||||||||||||| Sbjct: 59687 attattatttttatttatcca 59667
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome Length = 1584804 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 ttcaattattatttttattta 206 ||||||||||||||||||||| Sbjct: 956438 ttcaattattatttttattta 956458
>dbj|BS000117.1| Pan troglodytes chromosome 22 clone:RP43-027E03, map 22, complete sequences Length = 155641 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 tcaattattatttttatttat 207 ||||||||||||||||||||| Sbjct: 82472 tcaattattatttttatttat 82492
>dbj|AB063285.1| Homo sapiens HLCS gene for holocarboxylase synthetase, complete cds Length = 250000 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 tcaattattatttttatttat 207 ||||||||||||||||||||| Sbjct: 217230 tcaattattatttttatttat 217210
>dbj|AK064281.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G04, full insert sequence Length = 1161 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 338 tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 378 ||||||||| |||| |||||||| || ||||||||||||| Sbjct: 940 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 900
>dbj|AP001726.1| Homo sapiens genomic DNA, chromosome 21q, section 70/105 Length = 340000 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 tcaattattatttttatttat 207 ||||||||||||||||||||| Sbjct: 335682 tcaattattatttttatttat 335702
>dbj|AP005362.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1574E2, complete sequence Length = 219049 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 caattattatttttatttatc 208 ||||||||||||||||||||| Sbjct: 147526 caattattatttttatttatc 147506
>dbj|AP000698.1| Homo sapiens genomic DNA, chromosome 21q22.2, cosmid clone:D8F6, CBR1-HLCS region Length = 39159 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 tcaattattatttttatttat 207 ||||||||||||||||||||| Sbjct: 21346 tcaattattatttttatttat 21366
>gb|AC150651.3| Bos taurus BAC CH240-451E16 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 174648 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 attattatttttatttatccaagt 213 |||||||||||||||||| ||||| Sbjct: 12410 attattatttttatttattcaagt 12387
>gb|AC159638.2| Mus musculus BAC clone RP24-78C16 from chromosome 12, complete sequence Length = 190196 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ttcaattattatttttattt 205 |||||||||||||||||||| Sbjct: 37564 ttcaattattatttttattt 37545
>gb|AC185956.1| Populus trichocarpa clone Pop1-93N08, complete sequence Length = 73786 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 aattattatttttatttatc 208 |||||||||||||||||||| Sbjct: 35552 aattattatttttatttatc 35533
>emb|CR318625.10| Zebrafish DNA sequence from clone DKEY-119A7 in linkage group 17, complete sequence Length = 142057 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ttcaattattatttttattt 205 |||||||||||||||||||| Sbjct: 125089 ttcaattattatttttattt 125070
>emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in linkage group 15, complete sequence Length = 179357 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ttattatttttatttatcca 210 |||||||||||||||||||| Sbjct: 12184 ttattatttttatttatcca 12165
>ref|XM_733178.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000260.02.0) partial mRNA Length = 234 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 aattattatttttatttatc 208 |||||||||||||||||||| Sbjct: 232 aattattatttttatttatc 213
>ref|XM_739283.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000521.03.0) partial mRNA Length = 471 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 184 tgttcaattattatttttatttat 207 |||| ||||||||||||||||||| Sbjct: 156 tgttaaattattatttttatttat 133
>gb|AC121238.17| Medicago truncatula clone mth2-34p9, complete sequence Length = 104878 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 attattatttttatttatcc 209 |||||||||||||||||||| Sbjct: 98119 attattatttttatttatcc 98138
>emb|CR762396.8| Zebrafish DNA sequence from clone DKEY-262O12 in linkage group 1, complete sequence Length = 163635 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 ttcaattattatttttattt 205 |||||||||||||||||||| Sbjct: 118265 ttcaattattatttttattt 118284
>emb|AL591503.9| Human DNA sequence from clone RP11-571E6 on chromosome Xp11.22-11.3 Contains a nicolin 1 (NICN1) pseudogene, a novel gene, the 5'end of the ZNF157 gene for zinc finger protein 157 (HZF22) and a UBX domain containing 2 (UBXD2) pseudogene, complete sequence Length = 152659 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 caattattatttttatttat 207 |||||||||||||||||||| Sbjct: 121322 caattattatttttatttat 121341
>emb|BX855620.10| Zebrafish DNA sequence from clone DKEY-9M4 in linkage group 15, complete sequence Length = 33169 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 aattattatttttatttatc 208 |||||||||||||||||||| Sbjct: 19986 aattattatttttatttatc 19967
>emb|CR382398.1| Plasmodium falciparum chromosome 6, complete sequence; segment 1/5 Length = 349418 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 ttcaattattatttttattt 205 |||||||||||||||||||| Sbjct: 132191 ttcaattattatttttattt 132210
>emb|BX950184.7| Zebrafish DNA sequence from clone CH211-103O12 in linkage group 12, complete sequence Length = 150475 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 tgttcaattattatttttat 203 |||||||||||||||||||| Sbjct: 97242 tgttcaattattatttttat 97223
>emb|AL845544.11| Zebrafish DNA sequence from clone BUSM1-133F4 in linkage group 7 Contains three CpG islands, complete sequence Length = 110786 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 caatacatcagaatcaaatc 261 |||||||||||||||||||| Sbjct: 43424 caatacatcagaatcaaatc 43405
>emb|BX569788.6| Zebrafish DNA sequence from clone CH211-161N19 in linkage group 10, complete sequence Length = 162115 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 tcaattattatttttattta 206 |||||||||||||||||||| Sbjct: 25547 tcaattattatttttattta 25566
>gb|AC104137.5| Homo sapiens BAC clone RP11-807H7 from 4, complete sequence Length = 195930 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 aattattatttttatttatc 208 |||||||||||||||||||| Sbjct: 126479 aattattatttttatttatc 126460
>gb|AF465311.1| Dictyostelium discoideum ABC transporter ABCA.9 (abca9) gene, partial cds Length = 4234 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ttcaattattatttttattt 205 |||||||||||||||||||| Sbjct: 4043 ttcaattattatttttattt 4024
>emb|BX119984.15| Zebrafish DNA sequence from clone DKEY-257N17 in linkage group 1, complete sequence Length = 163978 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 tgttcaattattatttttat 203 |||||||||||||||||||| Sbjct: 15731 tgttcaattattatttttat 15750
>gb|AC154693.2| Mus musculus BAC clone RP24-340P22 from chromosome 14, complete sequence Length = 182996 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 189 aattattatttttatttatccaagtaca 216 |||||||||||||| || |||||||||| Sbjct: 98061 aattattatttttaattttccaagtaca 98088
>dbj|AP005645.1| Streptomyces avermitilis MA-4680 plasmid SAP1 DNA, complete sequence Length = 94287 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 357 gagcatgatgccgccgtagttgtccttc 384 ||||||||||| |||| ||||||||||| Sbjct: 66383 gagcatgatgcggccggagttgtccttc 66356
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 ttctgcgacaccggcgcgac 404 |||||||||||||||||||| Sbjct: 5735197 ttctgcgacaccggcgcgac 5735178
>gb|AC007934.7|AC007934 Homo sapiens, clone RP11-29A1, complete sequence Length = 157625 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 179 ccaactgttcaattattattttta 202 ||||||||| |||||||||||||| Sbjct: 93027 ccaactgttaaattattattttta 93004
>emb|BX901933.15| Zebrafish DNA sequence from clone DKEY-114H6 in linkage group 22, complete sequence Length = 42656 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 ttattatttttatttatccaagta 214 ||||||||||| |||||||||||| Sbjct: 17692 ttattatttttttttatccaagta 17715
>emb|AL929231.3| Zebrafish DNA sequence from clone BUSM1-46P4, complete sequence Length = 85305 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 tgttcaattattatttttat 203 |||||||||||||||||||| Sbjct: 73280 tgttcaattattatttttat 73299
>emb|AL928816.2| Zebrafish DNA sequence from clone BUSM1-265N4, complete sequence Length = 98918 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 tgttcaattattatttttat 203 |||||||||||||||||||| Sbjct: 33614 tgttcaattattatttttat 33633
>emb|CR391947.13| Zebrafish DNA sequence from clone DKEYP-88A4 in linkage group 1, complete sequence Length = 167207 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 ttcaattattatttttattt 205 |||||||||||||||||||| Sbjct: 137407 ttcaattattatttttattt 137426
>gb|AC079959.25| Mus musculus strain C57BL/6J chromosome 12 clone rp23-327i21, complete sequence Length = 218889 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 ttcaattattatttttattt 205 |||||||||||||||||||| Sbjct: 18723 ttcaattattatttttattt 18742
>emb|BX927330.9| Zebrafish DNA sequence from clone DKEY-43B14 in linkage group 2, complete sequence Length = 203149 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 aattattatttttatttatc 208 |||||||||||||||||||| Sbjct: 33340 aattattatttttatttatc 33321
>gb|AC160641.2| Ornithorhynchus anatinus BAC clone OABb-469P24 from chromosome unknown, complete sequence Length = 128941 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 attatttttatttatccaagtaca 216 ||||| |||||||||||||||||| Sbjct: 66721 attatctttatttatccaagtaca 66744
>gb|AC004062.1|AC004062 Homo sapiens chromosome 4 clone B316M24 map 4q25, complete sequence Length = 154252 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ttcaattattatttttattt 205 |||||||||||||||||||| Sbjct: 20307 ttcaattattatttttattt 20288
>emb|BX088567.6| Mouse DNA sequence from clone RP23-21L20 on chromosome X, complete sequence Length = 150122 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ttattatttttatttatcca 210 |||||||||||||||||||| Sbjct: 84264 ttattatttttatttatcca 84245 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,835,636 Number of Sequences: 3902068 Number of extensions: 4835636 Number of successful extensions: 157907 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 157444 Number of HSP's gapped (non-prelim): 461 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)