ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart13b08 |
|---|---|
| Clone Library Name | barley_pub |
>DCE1_ARATH (Q42521) Glutamate decarboxylase 1 (EC 4.1.1.15) (GAD 1)| Length = 502 Score = 82.8 bits (203), Expect = 3e-16 Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 9/83 (10%) Frame = -2 Query: 419 VVREDFSRTFAERLVINIEKVLHELDALPSR-----SSGPSLQHPNGD----TVSEKDLA 267 V+REDFSRT AERLVI+IEKV+ ELD LPSR S G N D TV + D+ Sbjct: 420 VIREDFSRTLAERLVIDIEKVMRELDELPSRVIHKISLGQEKSESNSDNLMVTVKKSDID 479 Query: 266 RQREVVSVWKRAVAARKKTQGVC 198 +QR++++ WK+ VA RKKT G+C Sbjct: 480 KQRDIITGWKKFVADRKKTSGIC 502
>DCE2_ARATH (Q42472) Glutamate decarboxylase 2 (EC 4.1.1.15) (GAD 2)| Length = 494 Score = 69.7 bits (169), Expect = 3e-12 Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 2/76 (2%) Frame = -2 Query: 419 VVREDFSRTFAERLVINIEKVLHELDALPSRSSGPSLQHPNGDTVSEKDLARQ--REVVS 246 V+REDFSRT AERLV +I KVLHELD LPS+ S + V EK + ++ EV+ Sbjct: 419 VIREDFSRTLAERLVADISKVLHELDTLPSKISKKMGIEGIAENVKEKKMEKEILMEVIV 478 Query: 245 VWKRAVAARKKTQGVC 198 W++ V RKK GVC Sbjct: 479 GWRKFVKERKKMNGVC 494
>DCE_PETHY (Q07346) Glutamate decarboxylase (EC 4.1.1.15) (GAD)| Length = 500 Score = 64.7 bits (156), Expect = 8e-11 Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 7/81 (8%) Frame = -2 Query: 419 VVREDFSRTFAERLVINIEKVLHELDALPSR-----SSGPSLQHPNGDTVSEK-DLARQR 258 V+REDFSRT AERLV +IEKVLHELD LP+R + NG V +K D Q Sbjct: 420 VIREDFSRTLAERLVRDIEKVLHELDTLPARVNAKLAVAEEQAAANGSEVHKKTDSEVQL 479 Query: 257 EVVSVWKRAV-AARKKTQGVC 198 E+++ WK+ V +KKT VC Sbjct: 480 EMITAWKKFVEEKKKKTNRVC 500
>DCE_LYCES (P54767) Glutamate decarboxylase (EC 4.1.1.15) (GAD) (ERT D1)| Length = 502 Score = 55.1 bits (131), Expect = 7e-08 Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 15/89 (16%) Frame = -2 Query: 419 VVREDFSRTFAERLVINIEKVLHELDALPSR---------------SSGPSLQHPNGDTV 285 V+REDFS + AERLV +IEK+L ELD P R G L H + DTV Sbjct: 421 VIREDFSHSLAERLVSDIEKILSELDTQPPRLPTKAVRVTAEEVRDDKGDGLHHFHMDTV 480 Query: 284 SEKDLARQREVVSVWKRAVAARKKTQGVC 198 Q++++ W++ A KKT GVC Sbjct: 481 E-----TQKDIIKHWRK--IAGKKTSGVC 502
>ANC1_CAEEL (Q9N4M4) Nuclear anchorage protein 1 (Anchorage 1 protein) (Nesprin| homolog) Length = 8545 Score = 31.6 bits (70), Expect = 0.80 Identities = 18/41 (43%), Positives = 24/41 (58%) Frame = -2 Query: 350 ELDALPSRSSGPSLQHPNGDTVSEKDLARQREVVSVWKRAV 228 E D+L SRS G P+ T+SE+ L RQR S W+R + Sbjct: 8456 EFDSLDSRSDGLLSPIPDDSTLSEEQLRRQR---SRWRRVL 8493
>CCHCR_GORGO (Q8HZ59) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 30.8 bits (68), Expect = 1.4 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -2 Query: 317 PSLQHPNGDTVSEKDLARQREVVSVWKRAVAARKKTQG 204 P +Q P VSE+ L QR V++W+R V++ ++ G Sbjct: 36 PLVQPPGHQDVSERQLDTQRPQVTMWERDVSSDRQEPG 73
>CCHCR_PONPY (Q8HZ58) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 30.0 bits (66), Expect = 2.3 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -2 Query: 317 PSLQHPNGDTVSEKDLARQREVVSVWKRAVAARKKTQG 204 P +Q P VSE+ L QR V++W+R V++ ++ G Sbjct: 36 PLVQPPGHQDVSERRLDTQRPQVTMWERDVSSDRQEPG 73
>CCHCR_PANTR (Q8HZ60) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 30.0 bits (66), Expect = 2.3 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -2 Query: 317 PSLQHPNGDTVSEKDLARQREVVSVWKRAVAARKKTQG 204 P +Q P VSE+ L QR V++W+R V++ ++ G Sbjct: 36 PLVQPPGHQDVSERRLDTQRPQVTMWERDVSSDRQEPG 73
>CCHCR_PANPA (Q8HZ57) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 30.0 bits (66), Expect = 2.3 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -2 Query: 317 PSLQHPNGDTVSEKDLARQREVVSVWKRAVAARKKTQG 204 P +Q P VSE+ L QR V++W+R V++ ++ G Sbjct: 36 PLVQPPGHQDVSERRLDTQRPQVTMWERDVSSDRQEPG 73
>CCHCR_HUMAN (Q8TD31) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) (Putative gene 8 protein) (Pg8) Length = 782 Score = 30.0 bits (66), Expect = 2.3 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -2 Query: 317 PSLQHPNGDTVSEKDLARQREVVSVWKRAVAARKKTQG 204 P +Q P VSE+ L QR V++W+R V++ ++ G Sbjct: 36 PLVQPPGHQDVSERRLDTQRPQVTMWERDVSSDRQEPG 73
>BLNK_HUMAN (Q8WV28) B-cell linker protein (Cytoplasmic adapter protein)| (B-cell adapter containing SH2 domain protein) (B-cell adapter containing Src homology 2 domain protein) (Src homology 2 domain-containing leukocyte protein of 65 kDa) (SLP-65) Length = 456 Score = 30.0 bits (66), Expect = 2.3 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +1 Query: 58 GSNNGARRTINPAP*KPSRTREA*HKIITEIKSSRTAGEVNRLSSAQQTP 207 G N+GA T +P P PS A K T +K++ A + N S ++ P Sbjct: 226 GRNSGAWETKSPPPAAPSPLPRAGKKPTTPLKTTPVASQQNASSVCEEKP 275
>MIAA_BORPE (Q7U366) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 313 Score = 29.3 bits (64), Expect = 3.9 Identities = 16/34 (47%), Positives = 21/34 (61%) Frame = +3 Query: 315 RPAAARGERVQLVEHLLDVDDEALGEGAAEVLPD 416 +P+AA ER Q+ +HLLD+ D A AAE D Sbjct: 50 KPSAA--ERAQVPQHLLDIRDPAQSYSAAEFRAD 81
>MIAA_BORBR (Q7U383) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 313 Score = 29.3 bits (64), Expect = 3.9 Identities = 16/34 (47%), Positives = 21/34 (61%) Frame = +3 Query: 315 RPAAARGERVQLVEHLLDVDDEALGEGAAEVLPD 416 +P+AA ER Q+ +HLLD+ D A AAE D Sbjct: 50 KPSAA--ERAQVPQHLLDIRDPAQSYSAAEFRAD 81
>TILS_ACIAD (Q6F880) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 459 Score = 28.5 bits (62), Expect = 6.7 Identities = 19/64 (29%), Positives = 34/64 (53%) Frame = -2 Query: 416 VREDFSRTFAERLVINIEKVLHELDALPSRSSGPSLQHPNGDTVSEKDLARQREVVSVWK 237 ++E SRT L+ + +++LHE+ G L H + + + LARQR+++S W Sbjct: 217 MQEAISRTSI--LMQDADEILHEVLQQDLNQCG-DLNHLDLSRLQQLSLARQRQLLSFWM 273 Query: 236 RAVA 225 + A Sbjct: 274 KGKA 277
>UVRC_BRUSU (Q8G1L5) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 611 Score = 28.5 bits (62), Expect = 6.7 Identities = 18/40 (45%), Positives = 22/40 (55%) Frame = +3 Query: 285 HRVAVGVLQGRPAAARGERVQLVEHLLDVDDEALGEGAAE 404 H+V V V Q RGE+ +LV+H L EALG AE Sbjct: 326 HKVQVSVPQ------RGEKKELVQHALTNAREALGRRLAE 359
>UVRC_BRUME (Q8YGA9) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 611 Score = 28.5 bits (62), Expect = 6.7 Identities = 18/40 (45%), Positives = 22/40 (55%) Frame = +3 Query: 285 HRVAVGVLQGRPAAARGERVQLVEHLLDVDDEALGEGAAE 404 H+V V V Q RGE+ +LV+H L EALG AE Sbjct: 326 HKVQVSVPQ------RGEKKELVQHALTNAREALGRRLAE 359
>UVRC_BRUA2 (Q2YN35) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 611 Score = 28.5 bits (62), Expect = 6.7 Identities = 18/40 (45%), Positives = 22/40 (55%) Frame = +3 Query: 285 HRVAVGVLQGRPAAARGERVQLVEHLLDVDDEALGEGAAE 404 H+V V V Q RGE+ +LV+H L EALG AE Sbjct: 326 HKVQVSVPQ------RGEKKELVQHALTNAREALGRRLAE 359
>UVRC_BRUAB (Q57E41) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 627 Score = 28.5 bits (62), Expect = 6.7 Identities = 18/40 (45%), Positives = 22/40 (55%) Frame = +3 Query: 285 HRVAVGVLQGRPAAARGERVQLVEHLLDVDDEALGEGAAE 404 H+V V V Q RGE+ +LV+H L EALG AE Sbjct: 342 HKVQVSVPQ------RGEKKELVQHALTNAREALGRRLAE 375
>RPOB_MYCLE (P30760) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1178 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/55 (29%), Positives = 28/55 (50%) Frame = -2 Query: 392 FAERLVINIEKVLHELDALPSRSSGPSLQHPNGDTVSEKDLARQREVVSVWKRAV 228 F E + + EK LH + +PSR + DTV + ++R+ V+V +A+ Sbjct: 187 FDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKAL 241
>RPOB_MYCPA (Q73SE4) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1175 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/55 (29%), Positives = 28/55 (50%) Frame = -2 Query: 392 FAERLVINIEKVLHELDALPSRSSGPSLQHPNGDTVSEKDLARQREVVSVWKRAV 228 F E + + EK LH + +PSR + DTV + ++R+ V+V +A+ Sbjct: 187 FDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKAL 241 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,983,225 Number of Sequences: 219361 Number of extensions: 720185 Number of successful extensions: 2261 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2241 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2258 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
