Clone Name | rbart13b01 |
---|---|
Clone Library Name | barley_pub |
>UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor| Length = 286 Score = 46.6 bits (109), Expect = 3e-05 Identities = 31/94 (32%), Positives = 38/94 (40%), Gaps = 11/94 (11%) Frame = -1 Query: 444 TTRLGSDGGGAKTTIYGLGWCTRDITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMA 265 TT LGSD T++G+ C D+ C CV A E+ C R + Y SCM Sbjct: 71 TTGLGSD------TVHGMFLCIGDVNRTTCNACVKNATIEIAKNCTNHREAIIYYFSCMV 124 Query: 264 RYEVYPFFFPL-----------DGADKSADEVGQ 196 RY F L D KS D+ GQ Sbjct: 125 RYSDKFFLSTLETKPNTYWSSDDPIPKSYDKFGQ 158
>UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein 3 precursor| Length = 287 Score = 45.1 bits (105), Expect = 1e-04 Identities = 20/54 (37%), Positives = 25/54 (46%) Frame = -1 Query: 420 GGAKTTIYGLGWCTRDITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARY 259 G A T+YG+ CT D+ C CV A E+ C R + Y CM RY Sbjct: 76 GLASDTVYGMFLCTGDVNITTCNNCVKNATIEIVKNCTNHREAIIYYIDCMVRY 129
>UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor| Length = 287 Score = 40.8 bits (94), Expect = 0.002 Identities = 18/54 (33%), Positives = 24/54 (44%) Frame = -1 Query: 420 GGAKTTIYGLGWCTRDITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARY 259 G A T++G+ CT D+ C CV A E+ C R + CM RY Sbjct: 72 GLASDTVHGMFLCTGDVNRTTCNACVKNATIEIAKNCTNHREAIIYNVDCMVRY 125 Score = 29.6 bits (65), Expect = 4.3 Identities = 13/50 (26%), Positives = 22/50 (44%) Frame = -1 Query: 384 CTRDITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARYEVYPFFFP 235 CT D+ +C C+ A+ EL C + + +CM ++ Y P Sbjct: 200 CTPDLDPRNCTTCLKLALQELTECCGNQVWAFIYTPNCMVSFDTYNSSLP 249
>KAMA_CLOSU (Q9XBQ8) L-lysine 2,3-aminomutase (EC 5.4.3.2) (KAM) (LAM)| Length = 416 Score = 29.3 bits (64), Expect = 5.6 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 5/24 (20%) Frame = -2 Query: 119 LRGHSSSLCVP-----GPGGGGES 63 LRGH+S CVP PGGGG++ Sbjct: 315 LRGHTSGYCVPTFVVDAPGGGGKT 338
>TILS_DEIRA (Q9RV23) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 582 Score = 29.3 bits (64), Expect = 5.6 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +1 Query: 355 AVGRRDVPGAPPEPVDGRLGSATIAAESRRVRRQALVGGV 474 AVG R+ G P +P+ +G A A+ R++ VG V Sbjct: 390 AVGARESLGLPADPLHAAMGEALALAQQAAERQEVPVGAV 429
>NU4M_DIDMA (P41308) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 474 Score = 28.9 bits (63), Expect = 7.3 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%) Frame = -1 Query: 162 CLWSTNY--V*STTVLSTRALQLVVRTWSWWW 73 CL +TNY + S T++ R LQL++ + WW Sbjct: 328 CLANTNYERIHSRTMILARGLQLILPLMTTWW 359
>INO1_SPIPO (P42803) Inositol-3-phosphate synthase (EC 5.5.1.4)| (Myo-inositol-1-phosphate synthase) (MI-1-P synthase) (IPS) Length = 510 Score = 28.9 bits (63), Expect = 7.3 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +1 Query: 142 VVCTPQTNTSRVQDNLVALSDLVGRLVGAVEREE 243 VV NT R D +V L+D + L+ AVER+E Sbjct: 225 VVVLWTANTERYSDLVVGLNDTMENLLAAVERDE 258
>SPTA3_HUMAN (Q8NHX4) Spermatogenesis-associated protein 3 (Testis spermatocyte| apoptosis-related protein 1) (Testis and spermatogenesis cell-related protein 1) Length = 183 Score = 28.5 bits (62), Expect = 9.6 Identities = 9/17 (52%), Positives = 10/17 (58%) Frame = +3 Query: 423 HRCRVASCPSPGPCWRR 473 H C A+CP CWRR Sbjct: 100 HSCSCATCPCSSACWRR 116 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,721,139 Number of Sequences: 219361 Number of extensions: 1189786 Number of successful extensions: 4694 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 4308 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4680 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)