ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart13b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor 47 3e-05
2UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein... 45 1e-04
3UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor 41 0.002
4KAMA_CLOSU (Q9XBQ8) L-lysine 2,3-aminomutase (EC 5.4.3.2) (KAM) ... 29 5.6
5TILS_DEIRA (Q9RV23) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR... 29 5.6
6NU4M_DIDMA (P41308) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 29 7.3
7INO1_SPIPO (P42803) Inositol-3-phosphate synthase (EC 5.5.1.4) (... 29 7.3
8SPTA3_HUMAN (Q8NHX4) Spermatogenesis-associated protein 3 (Testi... 28 9.6

>UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor|
          Length = 286

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 31/94 (32%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
 Frame = -1

Query: 444 TTRLGSDGGGAKTTIYGLGWCTRDITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMA 265
           TT LGSD      T++G+  C  D+    C  CV  A  E+   C   R   + Y SCM 
Sbjct: 71  TTGLGSD------TVHGMFLCIGDVNRTTCNACVKNATIEIAKNCTNHREAIIYYFSCMV 124

Query: 264 RYEVYPFFFPL-----------DGADKSADEVGQ 196
           RY    F   L           D   KS D+ GQ
Sbjct: 125 RYSDKFFLSTLETKPNTYWSSDDPIPKSYDKFGQ 158



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>UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein 3 precursor|
          Length = 287

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = -1

Query: 420 GGAKTTIYGLGWCTRDITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARY 259
           G A  T+YG+  CT D+    C  CV  A  E+   C   R   + Y  CM RY
Sbjct: 76  GLASDTVYGMFLCTGDVNITTCNNCVKNATIEIVKNCTNHREAIIYYIDCMVRY 129



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>UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor|
          Length = 287

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -1

Query: 420 GGAKTTIYGLGWCTRDITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARY 259
           G A  T++G+  CT D+    C  CV  A  E+   C   R   +    CM RY
Sbjct: 72  GLASDTVHGMFLCTGDVNRTTCNACVKNATIEIAKNCTNHREAIIYNVDCMVRY 125



 Score = 29.6 bits (65), Expect = 4.3
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -1

Query: 384 CTRDITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARYEVYPFFFP 235
           CT D+   +C  C+  A+ EL   C  +    +   +CM  ++ Y    P
Sbjct: 200 CTPDLDPRNCTTCLKLALQELTECCGNQVWAFIYTPNCMVSFDTYNSSLP 249



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>KAMA_CLOSU (Q9XBQ8) L-lysine 2,3-aminomutase (EC 5.4.3.2) (KAM) (LAM)|
          Length = 416

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 5/24 (20%)
 Frame = -2

Query: 119 LRGHSSSLCVP-----GPGGGGES 63
           LRGH+S  CVP      PGGGG++
Sbjct: 315 LRGHTSGYCVPTFVVDAPGGGGKT 338



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>TILS_DEIRA (Q9RV23) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 582

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 355 AVGRRDVPGAPPEPVDGRLGSATIAAESRRVRRQALVGGV 474
           AVG R+  G P +P+   +G A   A+    R++  VG V
Sbjct: 390 AVGARESLGLPADPLHAAMGEALALAQQAAERQEVPVGAV 429



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>NU4M_DIDMA (P41308) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 474

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -1

Query: 162 CLWSTNY--V*STTVLSTRALQLVVRTWSWWW 73
           CL +TNY  + S T++  R LQL++   + WW
Sbjct: 328 CLANTNYERIHSRTMILARGLQLILPLMTTWW 359



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>INO1_SPIPO (P42803) Inositol-3-phosphate synthase (EC 5.5.1.4)|
           (Myo-inositol-1-phosphate synthase) (MI-1-P synthase)
           (IPS)
          Length = 510

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 142 VVCTPQTNTSRVQDNLVALSDLVGRLVGAVEREE 243
           VV     NT R  D +V L+D +  L+ AVER+E
Sbjct: 225 VVVLWTANTERYSDLVVGLNDTMENLLAAVERDE 258



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>SPTA3_HUMAN (Q8NHX4) Spermatogenesis-associated protein 3 (Testis spermatocyte|
           apoptosis-related protein 1) (Testis and spermatogenesis
           cell-related protein 1)
          Length = 183

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 423 HRCRVASCPSPGPCWRR 473
           H C  A+CP    CWRR
Sbjct: 100 HSCSCATCPCSSACWRR 116


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,721,139
Number of Sequences: 219361
Number of extensions: 1189786
Number of successful extensions: 4694
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4680
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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