Clone Name | rbart13a12 |
---|---|
Clone Library Name | barley_pub |
>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds Length = 1373 Score = 329 bits (166), Expect = 5e-87 Identities = 373/440 (84%), Gaps = 4/440 (0%) Strand = Plus / Minus Query: 60 aattacaagcttgtcgctgaagctgttacatgataatatccttgcaaacataaggaaccc 119 ||||||||||||||| || | ||||||||||||||||||||||||||||||| || | Sbjct: 1297 aattacaagcttgtcact-aggctgttacatgataatatccttgcaaacatagggcagtg 1239 Query: 120 cctttatttttctttatcggagcacaccatccatacataaacaaagcacactgcaagggt 179 |||||||||||||| | | |||| |||||||||||||||| ||||||||||| |||||| Sbjct: 1238 cctttatttttcttcagcaaagcaaaccatccatacataaataaagcacactgaaagggt 1179 Query: 180 acttcagagtatcccttgttagataaacttttgagaaaggctttacttgtagacctcgat 239 ||| |||||| |||| ||||||||||| |||| || |||||||||||||||| Sbjct: 1178 actaaagagtacaacttg---gataaacttttatgaaaccgttcacttgtagacctcgat 1122 Query: 240 gacacctcgtgcacccattttcttgataattttgtagtcggtgaaccctgctttcatgaa 299 |||||||||||||||| |||||||| ||||||||||||| | |||||||||||| |||| Sbjct: 1121 aacacctcgtgcacccagtttcttgacaattttgtagtcgctaaaccctgctttcgtgaa 1062 Query: 300 gaggtctcgccagtcattttcgctacgttgacggcccctcgtgaacacaagcatgagcat 359 ||| || |||||| |||||| || ||||||||||| |||||||||||||||||||| || Sbjct: 1061 gagctcatgccagttattttcacttcgttgacggcctctcgtgaacacaagcatgaggat 1002 Query: 360 gtccatgagagtctgggcctcaaacatgacaggtcctaatgatggttcgaccacgatatc 419 |||||| ||||| || ||| ||||||||| | || ||||| || ||||||| || || Sbjct: 1001 gtccatcagagtttgttccttaaacatgacttggcccaatgagggggcgaccacaatgtc 942 Query: 420 aatgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggttag 479 || ||||||||||| ||||||||||| || ||||||||||||| |||||| |||||||| Sbjct: 941 tattacaatcacctttcctccctcctcgcgtgaaggaatggcatccttacattgggttag 882 Query: 480 gatcttcacacaatcgtcgt 499 |||||| | |||||| |||| Sbjct: 881 gatcttaaaacaatcctcgt 862
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21, complete sequence Length = 147381 Score = 97.6 bits (49), Expect = 3e-17 Identities = 210/261 (80%), Gaps = 2/261 (0%) Strand = Plus / Minus Query: 229 tagacctcgatgacacctcgtgcacccattttcttgataattttgtagtcggtgaaccct 288 |||||||||| |||| |||| ||||| | |||||| | ||| || ||||| |||| ||| Sbjct: 64471 tagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatcct 64412 Query: 289 gctttcatgaagaggtctcgccagtcattttcgctacgttgacggcccctcgtgaacaca 348 ||| ||||||| ||||| |||| ||||||||| | |||||||| || || || ||| Sbjct: 64411 gctgtcatgaacaggtcatgccaatcattttcgttccgttgacgacctctagtattcacc 64352 Query: 349 agcatgagcatgtccatga-gagtctgggcctcaaacatgacaggtcctaatgatggttc 407 | ||||||||||||||| | ||| ||| || || ||||| ||||| || || |||||||| Sbjct: 64351 atcatgagcatgtccatcatgag-ctgcgcttcgaacattacaggccccaaagatggttc 64293 Query: 408 gaccacgatatcaatgacaatcaccttccctccctcctcacgggaaggaatggcattctt 467 |||| |||||| |||||||||| |||||| ||||||| || |||||||| || || || Sbjct: 64292 aaccaagatatctatgacaatcaacttcccgccctcctttcgtgaaggaatagccttttt 64233 Query: 468 acactgggttaggatcttcac 488 ||||| | |||||||||||| Sbjct: 64232 gcactgagctaggatcttcac 64212 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 372 ctgggcctcaaacatgacaggtcctaatgatggttcgaccacgatatcaatgacaatcac 431 |||||| |||||||| || ||||||| ||| ||| | |||| || || |||| || || Sbjct: 123014 ctgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgac 122955 Query: 432 cttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcacaca 491 ||||||||||||||| || || |||||||| || | ||||| || | ||||||||| || Sbjct: 122954 cttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgca 122895 Query: 492 atc 494 ||| Sbjct: 122894 atc 122892
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 97.6 bits (49), Expect = 3e-17 Identities = 210/261 (80%), Gaps = 2/261 (0%) Strand = Plus / Plus Query: 229 tagacctcgatgacacctcgtgcacccattttcttgataattttgtagtcggtgaaccct 288 |||||||||| |||| |||| ||||| | |||||| | ||| || ||||| |||| ||| Sbjct: 11549317 tagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatcct 11549376 Query: 289 gctttcatgaagaggtctcgccagtcattttcgctacgttgacggcccctcgtgaacaca 348 ||| ||||||| ||||| |||| ||||||||| | |||||||| || || || ||| Sbjct: 11549377 gctgtcatgaacaggtcatgccaatcattttcgttccgttgacgacctctagtattcacc 11549436 Query: 349 agcatgagcatgtccatga-gagtctgggcctcaaacatgacaggtcctaatgatggttc 407 | ||||||||||||||| | ||| ||| || || ||||| ||||| || || |||||||| Sbjct: 11549437 atcatgagcatgtccatcatgag-ctgcgcttcgaacattacaggccccaaagatggttc 11549495 Query: 408 gaccacgatatcaatgacaatcaccttccctccctcctcacgggaaggaatggcattctt 467 |||| |||||| |||||||||| |||||| ||||||| || |||||||| || || || Sbjct: 11549496 aaccaagatatctatgacaatcaacttcccgccctcctttcgtgaaggaatagccttttt 11549555 Query: 468 acactgggttaggatcttcac 488 ||||| | |||||||||||| Sbjct: 11549556 gcactgagctaggatcttcac 11549576 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 421 atgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggttagg 480 ||||| ||||||||||||||||||| || ||||| ||||| ||||| ||||||| ||| Sbjct: 7137724 atgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgggacagg 7137783 Query: 481 atcttcacacaatcgtc 497 |||||||| || ||||| Sbjct: 7137784 atcttcacgcagtcgtc 7137800 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Plus Query: 418 tcaatgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggtt 477 ||||||| |||||||||||||| || | |||| ||||| || |||||||| || ||| Sbjct: 11329787 tcaatgatgatcaccttccctccatctttgcgggctggaatagctttcttacattgagtt 11329846 Query: 478 aggatcttcacacaatcgtcgtcac 502 || || ||||||||||| ||||||| Sbjct: 11329847 agtattttcacacaatcctcgtcac 11329871 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 281 tgaaccctgctttcatgaagaggtctcgccagtcattttcg 321 |||| ||||||||| ||||||| || ||||||||||||||| Sbjct: 11329653 tgaagcctgctttcttgaagagatcacgccagtcattttcg 11329693 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 253 cccattttcttgataattttgtagtcggtgaaccctgctttcatgaagaggtctcgccag 312 |||| |||||| | ||| |||||||| |||| ||| ||||||||||||| |||||||| Sbjct: 11294558 cccaatttcttcacaatcttgtagtccctgaagcctactttcatgaagagatctcgccaa 11294617 Query: 313 tcatt 317 ||||| Sbjct: 11294618 tcatt 11294622 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Plus Query: 372 ctgggcctcaaacatgacaggtcctaatgatggttcgaccacgatatcaatgacaatcac 431 |||||| |||||||| || ||||||| ||| ||| | |||| || || |||| || || Sbjct: 11490774 ctgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgac 11490833 Query: 432 cttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcacaca 491 ||||||||||||||| || || |||||||| || | ||||| || | ||||||||| || Sbjct: 11490834 cttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgca 11490893 Query: 492 atc 494 ||| Sbjct: 11490894 atc 11490896 Score = 46.1 bits (23), Expect = 0.11 Identities = 62/75 (82%) Strand = Plus / Plus Query: 427 atcaccttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttc 486 |||||||||||||| || || |||| ||||| || ||||| || | | |||||||||| Sbjct: 11354087 atcaccttccctccatcttctcgggttggaatagctttcttgcaattagctaggatcttc 11354146 Query: 487 acacaatcgtcgtca 501 |||||||| |||||| Sbjct: 11354147 acacaatcctcgtca 11354161
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 97.6 bits (49), Expect = 3e-17 Identities = 210/261 (80%), Gaps = 2/261 (0%) Strand = Plus / Plus Query: 229 tagacctcgatgacacctcgtgcacccattttcttgataattttgtagtcggtgaaccct 288 |||||||||| |||| |||| ||||| | |||||| | ||| || ||||| |||| ||| Sbjct: 11628506 tagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatcct 11628565 Query: 289 gctttcatgaagaggtctcgccagtcattttcgctacgttgacggcccctcgtgaacaca 348 ||| ||||||| ||||| |||| ||||||||| | |||||||| || || || ||| Sbjct: 11628566 gctgtcatgaacaggtcatgccaatcattttcgttccgttgacgacctctagtattcacc 11628625 Query: 349 agcatgagcatgtccatga-gagtctgggcctcaaacatgacaggtcctaatgatggttc 407 | ||||||||||||||| | ||| ||| || || ||||| ||||| || || |||||||| Sbjct: 11628626 atcatgagcatgtccatcatgag-ctgcgcttcgaacattacaggccccaaagatggttc 11628684 Query: 408 gaccacgatatcaatgacaatcaccttccctccctcctcacgggaaggaatggcattctt 467 |||| |||||| |||||||||| |||||| ||||||| || |||||||| || || || Sbjct: 11628685 aaccaagatatctatgacaatcaacttcccgccctcctttcgtgaaggaatagccttttt 11628744 Query: 468 acactgggttaggatcttcac 488 ||||| | |||||||||||| Sbjct: 11628745 gcactgagctaggatcttcac 11628765 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 421 atgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggttagg 480 ||||| ||||||||||||||||||| || ||||| ||||| ||||| ||||||| ||| Sbjct: 7203695 atgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgggacagg 7203754 Query: 481 atcttcacacaatcgtc 497 |||||||| || ||||| Sbjct: 7203755 atcttcacgcagtcgtc 7203771 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Plus Query: 418 tcaatgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggtt 477 ||||||| |||||||||||||| || | |||| ||||| || |||||||| || ||| Sbjct: 11408976 tcaatgatgatcaccttccctccatctttgcgggctggaatagctttcttacattgagtt 11409035 Query: 478 aggatcttcacacaatcgtcgtcac 502 || || ||||||||||| ||||||| Sbjct: 11409036 agtattttcacacaatcctcgtcac 11409060 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 281 tgaaccctgctttcatgaagaggtctcgccagtcattttcg 321 |||| ||||||||| ||||||| || ||||||||||||||| Sbjct: 11408842 tgaagcctgctttcttgaagagatcacgccagtcattttcg 11408882 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 253 cccattttcttgataattttgtagtcggtgaaccctgctttcatgaagaggtctcgccag 312 |||| |||||| | ||| |||||||| |||| ||| ||||||||||||| |||||||| Sbjct: 11373747 cccaatttcttcacaatcttgtagtccctgaagcctactttcatgaagagatctcgccaa 11373806 Query: 313 tcatt 317 ||||| Sbjct: 11373807 tcatt 11373811 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Plus Query: 372 ctgggcctcaaacatgacaggtcctaatgatggttcgaccacgatatcaatgacaatcac 431 |||||| |||||||| || ||||||| ||| ||| | |||| || || |||| || || Sbjct: 11569963 ctgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgac 11570022 Query: 432 cttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcacaca 491 ||||||||||||||| || || |||||||| || | ||||| || | ||||||||| || Sbjct: 11570023 cttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgca 11570082 Query: 492 atc 494 ||| Sbjct: 11570083 atc 11570085 Score = 46.1 bits (23), Expect = 0.11 Identities = 62/75 (82%) Strand = Plus / Plus Query: 427 atcaccttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttc 486 |||||||||||||| || || |||| ||||| || ||||| || | | |||||||||| Sbjct: 11433276 atcaccttccctccatcttctcgggttggaatagctttcttgcaattagctaggatcttc 11433335 Query: 487 acacaatcgtcgtca 501 |||||||| |||||| Sbjct: 11433336 acacaatcctcgtca 11433350
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0097K08 map C827S, complete sequence Length = 137870 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 421 atgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggttagg 480 ||||| ||||||||||||||||||| || ||||| ||||| ||||| ||||||| ||| Sbjct: 44831 atgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgggacagg 44772 Query: 481 atcttcacacaatcgtc 497 |||||||| || ||||| Sbjct: 44771 atcttcacgcagtcgtc 44755
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0026P08 map near C827S, complete sequence Length = 148676 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 421 atgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggttagg 480 ||||| ||||||||||||||||||| || ||||| ||||| ||||| ||||||| ||| Sbjct: 50944 atgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgggacagg 51003 Query: 481 atcttcacacaatcgtc 497 |||||||| || ||||| Sbjct: 51004 atcttcacgcagtcgtc 51020
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Plus Query: 418 tcaatgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggtt 477 ||||||| |||||||||||||| || | |||| ||||| || |||||||| || ||| Sbjct: 116145 tcaatgatgatcaccttccctccatctttgcgggctggaatagctttcttacattgagtt 116204 Query: 478 aggatcttcacacaatcgtcgtcac 502 || || ||||||||||| ||||||| Sbjct: 116205 agtattttcacacaatcctcgtcac 116229 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 281 tgaaccctgctttcatgaagaggtctcgccagtcattttcg 321 |||| ||||||||| ||||||| || ||||||||||||||| Sbjct: 116011 tgaagcctgctttcttgaagagatcacgccagtcattttcg 116051 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 253 cccattttcttgataattttgtagtcggtgaaccctgctttcatgaagaggtctcgccag 312 |||| |||||| | ||| |||||||| |||| ||| ||||||||||||| |||||||| Sbjct: 80916 cccaatttcttcacaatcttgtagtccctgaagcctactttcatgaagagatctcgccaa 80975 Query: 313 tcatt 317 ||||| Sbjct: 80976 tcatt 80980 Score = 46.1 bits (23), Expect = 0.11 Identities = 62/75 (82%) Strand = Plus / Plus Query: 427 atcaccttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttc 486 |||||||||||||| || || |||| ||||| || ||||| || | | |||||||||| Sbjct: 140445 atcaccttccctccatcttctcgggttggaatagctttcttgcaattagctaggatcttc 140504 Query: 487 acacaatcgtcgtca 501 |||||||| |||||| Sbjct: 140505 acacaatcctcgtca 140519
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full insert sequence Length = 1262 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 281 tgaaccctgctttcatgaagaggtctcgccagtcattttcg 321 |||| ||||||||| ||||||| || ||||||||||||||| Sbjct: 1112 tgaagcctgctttcttgaagagatcacgccagtcattttcg 1072 Score = 50.1 bits (25), Expect = 0.007 Identities = 70/85 (82%) Strand = Plus / Minus Query: 418 tcaatgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggtt 477 ||||||| |||||||||||||| || | |||| ||||| || |||||||| || ||| Sbjct: 978 tcaatgatgatcaccttccctccatctttgcgggctggaatagctttcttacattgagtt 919 Query: 478 aggatcttcacacaatcgtcgtcac 502 || || ||||||||||| ||||||| Sbjct: 918 agtattttcacacaatcctcgtcac 894
>gb|AY107519.1| Zea mays PCO078033 mRNA sequence Length = 1299 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Minus Query: 228 gtagacctcgatgacacctcgtgcacccattttcttgataattttgtagtcgg 280 |||||||||||||||||| || || || |||||||||| || |||||||||| Sbjct: 1103 gtagacctcgatgacaccacgagctccgattttcttgacaaccttgtagtcgg 1051
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence Length = 128418 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 372 ctgggcctcaaacatgacaggtcctaatgatggttcgaccacgatatcaatgacaatcac 431 |||||| |||||||| || ||||||| ||| ||| | |||| || || |||| || || Sbjct: 8763 ctgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgac 8704 Query: 432 cttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcacaca 491 ||||||||||||||| || || |||||||| || | ||||| || | ||||||||| || Sbjct: 8703 cttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgca 8644 Query: 492 atc 494 ||| Sbjct: 8643 atc 8641
>emb|BX009572.1|CNS08FJS Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA15CA02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 535 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1 acatacacaaacaaacttattgt 23 ||||||||||||||||||||||| Sbjct: 235 acatacacaaacaaacttattgt 257
>ref|XM_320984.2| Anopheles gambiae str. PEST ENSANGP00000019928 (ENSANGG00000017439), partial mRNA Length = 1872 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1 acatacacaaacaaacttattgt 23 ||||||||||||||||||||||| Sbjct: 1626 acatacacaaacaaacttattgt 1604
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full insert sequence Length = 1362 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 372 ctgggcctcaaacatgacaggtcctaatgatggttcgaccacgatatcaatgacaatcac 431 |||||| |||||||| || ||||||| ||| ||| | |||| || || |||| || || Sbjct: 1007 ctgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgac 948 Query: 432 cttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcacaca 491 ||||||||||||||| || || |||||||| || | ||||| || | ||||||||| || Sbjct: 947 cttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgca 888 Query: 492 atc 494 ||| Sbjct: 887 atc 885
>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full insert sequence Length = 1264 Score = 46.1 bits (23), Expect = 0.11 Identities = 98/123 (79%) Strand = Plus / Minus Query: 372 ctgggcctcaaacatgacaggtcctaatgatggttcgaccacgatatcaatgacaatcac 431 |||||| |||||||| || ||||||| ||| ||| | |||| || || |||| || || Sbjct: 1012 ctgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgac 953 Query: 432 cttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcacaca 491 ||||||||||||||| || || |||||||| || | ||||| || | ||||||||| || Sbjct: 952 cttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgca 893 Query: 492 atc 494 ||| Sbjct: 892 atc 890
>ref|XM_670200.1| Plasmodium berghei strain ANKA hypothetical protein (PB104271.00.0) partial mRNA Length = 2088 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 254 ccattttcttgataattttgt 274 ||||||||||||||||||||| Sbjct: 1345 ccattttcttgataattttgt 1325
>gb|AC094963.9| Rattus norvegicus X BAC CH230-6L20 (Children's Hospital Oakland Research Institute) complete sequence Length = 213440 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 cattttcttgataattttgta 275 ||||||||||||||||||||| Sbjct: 76825 cattttcttgataattttgta 76805
>emb|BX510648.5| Zebrafish DNA sequence from clone CH211-155O9 in linkage group 5, complete sequence Length = 191453 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 8 caaacaaacttattgtttaatactt 32 |||||||||| |||||||||||||| Sbjct: 61194 caaacaaactaattgtttaatactt 61218
>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome Length = 1827111 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 acaggtcctaatgatggttc 407 |||||||||||||||||||| Sbjct: 859378 acaggtcctaatgatggttc 859359
>emb|AL138711.13| Human DNA sequence from clone RP11-495J3 on chromosome 13q12.3-14.11 Contains a ribosomal protein S12 (RPS12) pseudogene and a CpG island, complete sequence Length = 182178 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 cattttcttgataattttgt 274 |||||||||||||||||||| Sbjct: 120367 cattttcttgataattttgt 120386
>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA sequence Length = 770 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 tagacctcgatgacacctcg 248 |||||||||||||||||||| Sbjct: 505 tagacctcgatgacacctcg 486
>emb|AL831789.6| Zebrafish DNA sequence from clone CH211-207O21 in linkage group 14 Contains the zebrafish fgf24 gene for fibroblast growth factor 24, a novel gene for a RING finger protein, the lbx1h gene for lady bird-like homeobox 1 homolog, (Drosophila) and eight CpG islands, complete sequence Length = 217649 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 acaaacaaacttattgttta 26 |||||||||||||||||||| Sbjct: 209418 acaaacaaacttattgttta 209437
>emb|CR933001.12| Zebrafish DNA sequence from clone DKEY-158B11 in linkage group 5, complete sequence Length = 158802 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 cattttcttgataattttgt 274 |||||||||||||||||||| Sbjct: 91007 cattttcttgataattttgt 90988
>gb|AC093814.3| Homo sapiens BAC clone RP11-362I16 from 4, complete sequence Length = 163201 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 aaacttattgtttaatactt 32 |||||||||||||||||||| Sbjct: 35694 aaacttattgtttaatactt 35713
>gb|AC061710.16| Homo sapiens 3 BAC RP11-395F21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 187657 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 ttagataaacttttgagaaa 217 |||||||||||||||||||| Sbjct: 100340 ttagataaacttttgagaaa 100321
>gb|AC022486.4|AC022486 Homo sapiens BAC clone RP11-569J3 from Y, complete sequence Length = 156357 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 ataaacaaagcacactgcaa 175 |||||||||||||||||||| Sbjct: 116672 ataaacaaagcacactgcaa 116691
>emb|BX294113.7| Zebrafish DNA sequence from clone DKEYP-73G8 in linkage group 24, complete sequence Length = 199820 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 344 acacaagcatgagcatgtccatga 367 |||||||||| ||||||||||||| Sbjct: 68031 acacaagcattagcatgtccatga 68008
>gb|AC007379.2|AC007379 Homo sapiens BAC clone RP11-143C1 from Y, complete sequence Length = 174082 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 ataaacaaagcacactgcaa 175 |||||||||||||||||||| Sbjct: 21693 ataaacaaagcacactgcaa 21674
>ref|NG_004636.1| Homo sapiens chromosome Y palindromes P4 and P5 (P4-P5@) on chromosome Y Length = 1351786 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 ataaacaaagcacactgcaa 175 |||||||||||||||||||| Sbjct: 1174694 ataaacaaagcacactgcaa 1174675 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 ataaacaaagcacactgcaa 175 |||||||||||||||||||| Sbjct: 1113516 ataaacaaagcacactgcaa 1113535
>gb|AC149314.2| Phakopsora pachyrhizi clone JGIAFNA-101K12, complete sequence Length = 35483 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 344 acacaagcatgagcatgtccatgagagt 371 |||||| ||||||||||| ||||||||| Sbjct: 12685 acacaatcatgagcatgtgcatgagagt 12658
>emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 in linkage group 24, complete sequence Length = 213091 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 344 acacaagcatgagcatgtccatga 367 |||||||||| ||||||||||||| Sbjct: 207721 acacaagcattagcatgtccatga 207744
>gb|AC125380.4| Mus musculus BAC clone RP23-204N23 from 1, complete sequence Length = 214005 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 tacataaacaaagcacactg 172 |||||||||||||||||||| Sbjct: 31022 tacataaacaaagcacactg 31003
>dbj|AP006401.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT18E13, TM0283, complete sequence Length = 112721 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 tgagaaaggctttacttgta 230 |||||||||||||||||||| Sbjct: 91431 tgagaaaggctttacttgta 91412 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,479,434 Number of Sequences: 3902068 Number of extensions: 5479434 Number of successful extensions: 117313 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117059 Number of HSP's gapped (non-prelim): 246 length of query: 502 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 480 effective length of database: 17,147,199,772 effective search space: 8230655890560 effective search space used: 8230655890560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)