ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart13a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete... 329 5e-87
2gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome... 98 3e-17
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 98 3e-17
5gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
6gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome... 66 1e-07
7gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.007
8dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
9gb|AY107519.1| Zea mays PCO078033 mRNA sequence 50 0.007
10gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1... 46 0.11
11emb|BX009572.1|CNS08FJS Single read from an extremity of a full-... 46 0.11
12ref|XM_320984.2| Anopheles gambiae str. PEST ENSANGP00000019928 ... 46 0.11
13dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
14dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.11
15ref|XM_670200.1| Plasmodium berghei strain ANKA hypothetical pro... 42 1.7
16gb|AC094963.9| Rattus norvegicus X BAC CH230-6L20 (Children's Ho... 42 1.7
17emb|BX510648.5| Zebrafish DNA sequence from clone CH211-155O9 in... 42 1.7
18gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118... 40 6.8
19emb|AL138711.13| Human DNA sequence from clone RP11-495J3 on chr... 40 6.8
20gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full... 40 6.8
21emb|AL831789.6| Zebrafish DNA sequence from clone CH211-207O21 i... 40 6.8
22emb|CR933001.12| Zebrafish DNA sequence from clone DKEY-158B11 i... 40 6.8
23gb|AC093814.3| Homo sapiens BAC clone RP11-362I16 from 4, comple... 40 6.8
24gb|AC061710.16| Homo sapiens 3 BAC RP11-395F21 (Roswell Park Can... 40 6.8
25gb|AC022486.4|AC022486 Homo sapiens BAC clone RP11-569J3 from Y,... 40 6.8
26emb|BX294113.7| Zebrafish DNA sequence from clone DKEYP-73G8 in ... 40 6.8
27gb|AC007379.2|AC007379 Homo sapiens BAC clone RP11-143C1 from Y,... 40 6.8
28ref|NG_004636.1| Homo sapiens chromosome Y palindromes P4 and P5... 40 6.8
29gb|AC149314.2| Phakopsora pachyrhizi clone JGIAFNA-101K12, compl... 40 6.8
30emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 ... 40 6.8
31gb|AC125380.4| Mus musculus BAC clone RP23-204N23 from 1, comple... 40 6.8
32dbj|AP006401.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 6.8

>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds
          Length = 1373

 Score =  329 bits (166), Expect = 5e-87
 Identities = 373/440 (84%), Gaps = 4/440 (0%)
 Strand = Plus / Minus

                                                                        
Query: 60   aattacaagcttgtcgctgaagctgttacatgataatatccttgcaaacataaggaaccc 119
            ||||||||||||||| || | ||||||||||||||||||||||||||||||| || |   
Sbjct: 1297 aattacaagcttgtcact-aggctgttacatgataatatccttgcaaacatagggcagtg 1239

                                                                        
Query: 120  cctttatttttctttatcggagcacaccatccatacataaacaaagcacactgcaagggt 179
            |||||||||||||| | |  |||| |||||||||||||||| ||||||||||| ||||||
Sbjct: 1238 cctttatttttcttcagcaaagcaaaccatccatacataaataaagcacactgaaagggt 1179

                                                                        
Query: 180  acttcagagtatcccttgttagataaacttttgagaaaggctttacttgtagacctcgat 239
            |||  ||||||   ||||   |||||||||||  ||||   || ||||||||||||||||
Sbjct: 1178 actaaagagtacaacttg---gataaacttttatgaaaccgttcacttgtagacctcgat 1122

                                                                        
Query: 240  gacacctcgtgcacccattttcttgataattttgtagtcggtgaaccctgctttcatgaa 299
             |||||||||||||||| |||||||| ||||||||||||| | |||||||||||| ||||
Sbjct: 1121 aacacctcgtgcacccagtttcttgacaattttgtagtcgctaaaccctgctttcgtgaa 1062

                                                                        
Query: 300  gaggtctcgccagtcattttcgctacgttgacggcccctcgtgaacacaagcatgagcat 359
            ||| ||  |||||| |||||| || ||||||||||| |||||||||||||||||||| ||
Sbjct: 1061 gagctcatgccagttattttcacttcgttgacggcctctcgtgaacacaagcatgaggat 1002

                                                                        
Query: 360  gtccatgagagtctgggcctcaaacatgacaggtcctaatgatggttcgaccacgatatc 419
            |||||| ||||| ||  ||| |||||||||  | || ||||| ||  ||||||| || ||
Sbjct: 1001 gtccatcagagtttgttccttaaacatgacttggcccaatgagggggcgaccacaatgtc 942

                                                                        
Query: 420  aatgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggttag 479
             || ||||||||||| ||||||||||| || ||||||||||||| |||||| ||||||||
Sbjct: 941  tattacaatcacctttcctccctcctcgcgtgaaggaatggcatccttacattgggttag 882

                                
Query: 480  gatcttcacacaatcgtcgt 499
            |||||| | |||||| ||||
Sbjct: 881  gatcttaaaacaatcctcgt 862



to top

>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0005P21, complete sequence
          Length = 147381

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 210/261 (80%), Gaps = 2/261 (0%)
 Strand = Plus / Minus

                                                                         
Query: 229   tagacctcgatgacacctcgtgcacccattttcttgataattttgtagtcggtgaaccct 288
             |||||||||| |||| |||| ||||| | |||||| | ||| || |||||  |||| |||
Sbjct: 64471 tagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatcct 64412

                                                                         
Query: 289   gctttcatgaagaggtctcgccagtcattttcgctacgttgacggcccctcgtgaacaca 348
             ||| ||||||| |||||  |||| ||||||||| | |||||||| || || ||   ||| 
Sbjct: 64411 gctgtcatgaacaggtcatgccaatcattttcgttccgttgacgacctctagtattcacc 64352

                                                                         
Query: 349   agcatgagcatgtccatga-gagtctgggcctcaaacatgacaggtcctaatgatggttc 407
             | ||||||||||||||| | ||| ||| || || ||||| ||||| || || ||||||||
Sbjct: 64351 atcatgagcatgtccatcatgag-ctgcgcttcgaacattacaggccccaaagatggttc 64293

                                                                         
Query: 408   gaccacgatatcaatgacaatcaccttccctccctcctcacgggaaggaatggcattctt 467
              |||| |||||| |||||||||| |||||| |||||||  || |||||||| || || ||
Sbjct: 64292 aaccaagatatctatgacaatcaacttcccgccctcctttcgtgaaggaatagccttttt 64233

                                  
Query: 468   acactgggttaggatcttcac 488
              ||||| | ||||||||||||
Sbjct: 64232 gcactgagctaggatcttcac 64212



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 98/123 (79%)
 Strand = Plus / Minus

                                                                          
Query: 372    ctgggcctcaaacatgacaggtcctaatgatggttcgaccacgatatcaatgacaatcac 431
              |||||| |||||||| || ||||||| ||| ||| | ||||  || || ||||  || ||
Sbjct: 123014 ctgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgac 122955

                                                                          
Query: 432    cttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcacaca 491
              ||||||||||||||| || || |||||||| ||  | ||||| || | ||||||||| ||
Sbjct: 122954 cttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgca 122895

                 
Query: 492    atc 494
              |||
Sbjct: 122894 atc 122892



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 210/261 (80%), Gaps = 2/261 (0%)
 Strand = Plus / Plus

                                                                            
Query: 229      tagacctcgatgacacctcgtgcacccattttcttgataattttgtagtcggtgaaccct 288
                |||||||||| |||| |||| ||||| | |||||| | ||| || |||||  |||| |||
Sbjct: 11549317 tagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatcct 11549376

                                                                            
Query: 289      gctttcatgaagaggtctcgccagtcattttcgctacgttgacggcccctcgtgaacaca 348
                ||| ||||||| |||||  |||| ||||||||| | |||||||| || || ||   ||| 
Sbjct: 11549377 gctgtcatgaacaggtcatgccaatcattttcgttccgttgacgacctctagtattcacc 11549436

                                                                            
Query: 349      agcatgagcatgtccatga-gagtctgggcctcaaacatgacaggtcctaatgatggttc 407
                | ||||||||||||||| | ||| ||| || || ||||| ||||| || || ||||||||
Sbjct: 11549437 atcatgagcatgtccatcatgag-ctgcgcttcgaacattacaggccccaaagatggttc 11549495

                                                                            
Query: 408      gaccacgatatcaatgacaatcaccttccctccctcctcacgggaaggaatggcattctt 467
                 |||| |||||| |||||||||| |||||| |||||||  || |||||||| || || ||
Sbjct: 11549496 aaccaagatatctatgacaatcaacttcccgccctcctttcgtgaaggaatagccttttt 11549555

                                     
Query: 468      acactgggttaggatcttcac 488
                 ||||| | ||||||||||||
Sbjct: 11549556 gcactgagctaggatcttcac 11549576



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                           
Query: 421     atgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggttagg 480
               ||||| |||||||||||||||||||  || ||||| ||||| ||||| |||||||  |||
Sbjct: 7137724 atgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgggacagg 7137783

                                
Query: 481     atcttcacacaatcgtc 497
               |||||||| || |||||
Sbjct: 7137784 atcttcacgcagtcgtc 7137800



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 70/85 (82%)
 Strand = Plus / Plus

                                                                            
Query: 418      tcaatgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggtt 477
                |||||||  |||||||||||||| || |  ||||  ||||| || |||||||| || |||
Sbjct: 11329787 tcaatgatgatcaccttccctccatctttgcgggctggaatagctttcttacattgagtt 11329846

                                         
Query: 478      aggatcttcacacaatcgtcgtcac 502
                || || ||||||||||| |||||||
Sbjct: 11329847 agtattttcacacaatcctcgtcac 11329871



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                         
Query: 281      tgaaccctgctttcatgaagaggtctcgccagtcattttcg 321
                |||| ||||||||| ||||||| || |||||||||||||||
Sbjct: 11329653 tgaagcctgctttcttgaagagatcacgccagtcattttcg 11329693



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                            
Query: 253      cccattttcttgataattttgtagtcggtgaaccctgctttcatgaagaggtctcgccag 312
                |||| |||||| | ||| ||||||||  |||| ||| ||||||||||||| |||||||| 
Sbjct: 11294558 cccaatttcttcacaatcttgtagtccctgaagcctactttcatgaagagatctcgccaa 11294617

                     
Query: 313      tcatt 317
                |||||
Sbjct: 11294618 tcatt 11294622



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 98/123 (79%)
 Strand = Plus / Plus

                                                                            
Query: 372      ctgggcctcaaacatgacaggtcctaatgatggttcgaccacgatatcaatgacaatcac 431
                |||||| |||||||| || ||||||| ||| ||| | ||||  || || ||||  || ||
Sbjct: 11490774 ctgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgac 11490833

                                                                            
Query: 432      cttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcacaca 491
                ||||||||||||||| || || |||||||| ||  | ||||| || | ||||||||| ||
Sbjct: 11490834 cttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgca 11490893

                   
Query: 492      atc 494
                |||
Sbjct: 11490894 atc 11490896



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                            
Query: 427      atcaccttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttc 486
                |||||||||||||| || || ||||  ||||| || ||||| || |  | ||||||||||
Sbjct: 11354087 atcaccttccctccatcttctcgggttggaatagctttcttgcaattagctaggatcttc 11354146

                               
Query: 487      acacaatcgtcgtca 501
                |||||||| ||||||
Sbjct: 11354147 acacaatcctcgtca 11354161



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 210/261 (80%), Gaps = 2/261 (0%)
 Strand = Plus / Plus

                                                                            
Query: 229      tagacctcgatgacacctcgtgcacccattttcttgataattttgtagtcggtgaaccct 288
                |||||||||| |||| |||| ||||| | |||||| | ||| || |||||  |||| |||
Sbjct: 11628506 tagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatcct 11628565

                                                                            
Query: 289      gctttcatgaagaggtctcgccagtcattttcgctacgttgacggcccctcgtgaacaca 348
                ||| ||||||| |||||  |||| ||||||||| | |||||||| || || ||   ||| 
Sbjct: 11628566 gctgtcatgaacaggtcatgccaatcattttcgttccgttgacgacctctagtattcacc 11628625

                                                                            
Query: 349      agcatgagcatgtccatga-gagtctgggcctcaaacatgacaggtcctaatgatggttc 407
                | ||||||||||||||| | ||| ||| || || ||||| ||||| || || ||||||||
Sbjct: 11628626 atcatgagcatgtccatcatgag-ctgcgcttcgaacattacaggccccaaagatggttc 11628684

                                                                            
Query: 408      gaccacgatatcaatgacaatcaccttccctccctcctcacgggaaggaatggcattctt 467
                 |||| |||||| |||||||||| |||||| |||||||  || |||||||| || || ||
Sbjct: 11628685 aaccaagatatctatgacaatcaacttcccgccctcctttcgtgaaggaatagccttttt 11628744

                                     
Query: 468      acactgggttaggatcttcac 488
                 ||||| | ||||||||||||
Sbjct: 11628745 gcactgagctaggatcttcac 11628765



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                           
Query: 421     atgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggttagg 480
               ||||| |||||||||||||||||||  || ||||| ||||| ||||| |||||||  |||
Sbjct: 7203695 atgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgggacagg 7203754

                                
Query: 481     atcttcacacaatcgtc 497
               |||||||| || |||||
Sbjct: 7203755 atcttcacgcagtcgtc 7203771



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 70/85 (82%)
 Strand = Plus / Plus

                                                                            
Query: 418      tcaatgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggtt 477
                |||||||  |||||||||||||| || |  ||||  ||||| || |||||||| || |||
Sbjct: 11408976 tcaatgatgatcaccttccctccatctttgcgggctggaatagctttcttacattgagtt 11409035

                                         
Query: 478      aggatcttcacacaatcgtcgtcac 502
                || || ||||||||||| |||||||
Sbjct: 11409036 agtattttcacacaatcctcgtcac 11409060



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                         
Query: 281      tgaaccctgctttcatgaagaggtctcgccagtcattttcg 321
                |||| ||||||||| ||||||| || |||||||||||||||
Sbjct: 11408842 tgaagcctgctttcttgaagagatcacgccagtcattttcg 11408882



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                            
Query: 253      cccattttcttgataattttgtagtcggtgaaccctgctttcatgaagaggtctcgccag 312
                |||| |||||| | ||| ||||||||  |||| ||| ||||||||||||| |||||||| 
Sbjct: 11373747 cccaatttcttcacaatcttgtagtccctgaagcctactttcatgaagagatctcgccaa 11373806

                     
Query: 313      tcatt 317
                |||||
Sbjct: 11373807 tcatt 11373811



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 98/123 (79%)
 Strand = Plus / Plus

                                                                            
Query: 372      ctgggcctcaaacatgacaggtcctaatgatggttcgaccacgatatcaatgacaatcac 431
                |||||| |||||||| || ||||||| ||| ||| | ||||  || || ||||  || ||
Sbjct: 11569963 ctgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgac 11570022

                                                                            
Query: 432      cttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcacaca 491
                ||||||||||||||| || || |||||||| ||  | ||||| || | ||||||||| ||
Sbjct: 11570023 cttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgca 11570082

                   
Query: 492      atc 494
                |||
Sbjct: 11570083 atc 11570085



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                            
Query: 427      atcaccttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttc 486
                |||||||||||||| || || ||||  ||||| || ||||| || |  | ||||||||||
Sbjct: 11433276 atcaccttccctccatcttctcgggttggaatagctttcttgcaattagctaggatcttc 11433335

                               
Query: 487      acacaatcgtcgtca 501
                |||||||| ||||||
Sbjct: 11433336 acacaatcctcgtca 11433350



to top

>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0097K08 map C827S, complete sequence
          Length = 137870

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                         
Query: 421   atgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggttagg 480
             ||||| |||||||||||||||||||  || ||||| ||||| ||||| |||||||  |||
Sbjct: 44831 atgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgggacagg 44772

                              
Query: 481   atcttcacacaatcgtc 497
             |||||||| || |||||
Sbjct: 44771 atcttcacgcagtcgtc 44755



to top

>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0026P08 map near C827S, complete sequence
          Length = 148676

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                         
Query: 421   atgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggttagg 480
             ||||| |||||||||||||||||||  || ||||| ||||| ||||| |||||||  |||
Sbjct: 50944 atgacgatcaccttccctccctcctttcgtgaagggatggctttcttgcactgggacagg 51003

                              
Query: 481   atcttcacacaatcgtc 497
             |||||||| || |||||
Sbjct: 51004 atcttcacgcagtcgtc 51020



to top

>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05
              map C53961S, complete sequence
          Length = 175121

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 70/85 (82%)
 Strand = Plus / Plus

                                                                          
Query: 418    tcaatgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggtt 477
              |||||||  |||||||||||||| || |  ||||  ||||| || |||||||| || |||
Sbjct: 116145 tcaatgatgatcaccttccctccatctttgcgggctggaatagctttcttacattgagtt 116204

                                       
Query: 478    aggatcttcacacaatcgtcgtcac 502
              || || ||||||||||| |||||||
Sbjct: 116205 agtattttcacacaatcctcgtcac 116229



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                       
Query: 281    tgaaccctgctttcatgaagaggtctcgccagtcattttcg 321
              |||| ||||||||| ||||||| || |||||||||||||||
Sbjct: 116011 tgaagcctgctttcttgaagagatcacgccagtcattttcg 116051



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                         
Query: 253   cccattttcttgataattttgtagtcggtgaaccctgctttcatgaagaggtctcgccag 312
             |||| |||||| | ||| ||||||||  |||| ||| ||||||||||||| |||||||| 
Sbjct: 80916 cccaatttcttcacaatcttgtagtccctgaagcctactttcatgaagagatctcgccaa 80975

                  
Query: 313   tcatt 317
             |||||
Sbjct: 80976 tcatt 80980



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                          
Query: 427    atcaccttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttc 486
              |||||||||||||| || || ||||  ||||| || ||||| || |  | ||||||||||
Sbjct: 140445 atcaccttccctccatcttctcgggttggaatagctttcttgcaattagctaggatcttc 140504

                             
Query: 487    acacaatcgtcgtca 501
              |||||||| ||||||
Sbjct: 140505 acacaatcctcgtca 140519



to top

>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full
            insert sequence
          Length = 1262

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 281  tgaaccctgctttcatgaagaggtctcgccagtcattttcg 321
            |||| ||||||||| ||||||| || |||||||||||||||
Sbjct: 1112 tgaagcctgctttcttgaagagatcacgccagtcattttcg 1072



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 70/85 (82%)
 Strand = Plus / Minus

                                                                       
Query: 418 tcaatgacaatcaccttccctccctcctcacgggaaggaatggcattcttacactgggtt 477
           |||||||  |||||||||||||| || |  ||||  ||||| || |||||||| || |||
Sbjct: 978 tcaatgatgatcaccttccctccatctttgcgggctggaatagctttcttacattgagtt 919

                                    
Query: 478 aggatcttcacacaatcgtcgtcac 502
           || || ||||||||||| |||||||
Sbjct: 918 agtattttcacacaatcctcgtcac 894



to top

>gb|AY107519.1| Zea mays PCO078033 mRNA sequence
          Length = 1299

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 228  gtagacctcgatgacacctcgtgcacccattttcttgataattttgtagtcgg 280
            |||||||||||||||||| || || || |||||||||| ||  ||||||||||
Sbjct: 1103 gtagacctcgatgacaccacgagctccgattttcttgacaaccttgtagtcgg 1051



to top

>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
          Length = 128418

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 98/123 (79%)
 Strand = Plus / Minus

                                                                        
Query: 372  ctgggcctcaaacatgacaggtcctaatgatggttcgaccacgatatcaatgacaatcac 431
            |||||| |||||||| || ||||||| ||| ||| | ||||  || || ||||  || ||
Sbjct: 8763 ctgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgac 8704

                                                                        
Query: 432  cttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcacaca 491
            ||||||||||||||| || || |||||||| ||  | ||||| || | ||||||||| ||
Sbjct: 8703 cttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgca 8644

               
Query: 492  atc 494
            |||
Sbjct: 8643 atc 8641



to top

>emb|BX009572.1|CNS08FJS Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA15CA02 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 535

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 1   acatacacaaacaaacttattgt 23
           |||||||||||||||||||||||
Sbjct: 235 acatacacaaacaaacttattgt 257



to top

>ref|XM_320984.2| Anopheles gambiae str. PEST ENSANGP00000019928 (ENSANGG00000017439),
            partial mRNA
          Length = 1872

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 1    acatacacaaacaaacttattgt 23
            |||||||||||||||||||||||
Sbjct: 1626 acatacacaaacaaacttattgt 1604



to top

>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full
            insert sequence
          Length = 1362

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 98/123 (79%)
 Strand = Plus / Minus

                                                                        
Query: 372  ctgggcctcaaacatgacaggtcctaatgatggttcgaccacgatatcaatgacaatcac 431
            |||||| |||||||| || ||||||| ||| ||| | ||||  || || ||||  || ||
Sbjct: 1007 ctgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgac 948

                                                                        
Query: 432  cttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcacaca 491
            ||||||||||||||| || || |||||||| ||  | ||||| || | ||||||||| ||
Sbjct: 947  cttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgca 888

               
Query: 492  atc 494
            |||
Sbjct: 887  atc 885



to top

>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full
            insert sequence
          Length = 1264

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 98/123 (79%)
 Strand = Plus / Minus

                                                                        
Query: 372  ctgggcctcaaacatgacaggtcctaatgatggttcgaccacgatatcaatgacaatcac 431
            |||||| |||||||| || ||||||| ||| ||| | ||||  || || ||||  || ||
Sbjct: 1012 ctgggcttcaaacattactggtcctagtgaaggtccaaccagtatctctatgatgatgac 953

                                                                        
Query: 432  cttccctccctcctcacgggaaggaatggcattcttacactgggttaggatcttcacaca 491
            ||||||||||||||| || || |||||||| ||  | ||||| || | ||||||||| ||
Sbjct: 952  cttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacgca 893

               
Query: 492  atc 494
            |||
Sbjct: 892  atc 890



to top

>ref|XM_670200.1| Plasmodium berghei strain ANKA hypothetical protein (PB104271.00.0)
            partial mRNA
          Length = 2088

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 254  ccattttcttgataattttgt 274
            |||||||||||||||||||||
Sbjct: 1345 ccattttcttgataattttgt 1325



to top

>gb|AC094963.9| Rattus norvegicus X BAC CH230-6L20 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 213440

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 255   cattttcttgataattttgta 275
             |||||||||||||||||||||
Sbjct: 76825 cattttcttgataattttgta 76805



to top

>emb|BX510648.5| Zebrafish DNA sequence from clone CH211-155O9 in linkage group 5,
             complete sequence
          Length = 191453

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 8     caaacaaacttattgtttaatactt 32
             |||||||||| ||||||||||||||
Sbjct: 61194 caaacaaactaattgtttaatactt 61218



to top

>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome
          Length = 1827111

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 388    acaggtcctaatgatggttc 407
              ||||||||||||||||||||
Sbjct: 859378 acaggtcctaatgatggttc 859359



to top

>emb|AL138711.13| Human DNA sequence from clone RP11-495J3 on chromosome 13q12.3-14.11
              Contains a ribosomal protein S12 (RPS12) pseudogene and a
              CpG island, complete sequence
          Length = 182178

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    cattttcttgataattttgt 274
              ||||||||||||||||||||
Sbjct: 120367 cattttcttgataattttgt 120386



to top

>gb|BT009571.1| Triticum aestivum clone wre1n.pk0021.e3:fis, full insert mRNA
           sequence
          Length = 770

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 tagacctcgatgacacctcg 248
           ||||||||||||||||||||
Sbjct: 505 tagacctcgatgacacctcg 486



to top

>emb|AL831789.6| Zebrafish DNA sequence from clone CH211-207O21 in linkage group 14
              Contains the zebrafish fgf24 gene for fibroblast growth
              factor 24, a novel gene for a RING finger protein, the
              lbx1h gene for lady bird-like homeobox 1 homolog,
              (Drosophila) and eight CpG islands, complete sequence
          Length = 217649

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      acaaacaaacttattgttta 26
              ||||||||||||||||||||
Sbjct: 209418 acaaacaaacttattgttta 209437



to top

>emb|CR933001.12| Zebrafish DNA sequence from clone DKEY-158B11 in linkage group 5,
             complete sequence
          Length = 158802

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   cattttcttgataattttgt 274
             ||||||||||||||||||||
Sbjct: 91007 cattttcttgataattttgt 90988



to top

>gb|AC093814.3| Homo sapiens BAC clone RP11-362I16 from 4, complete sequence
          Length = 163201

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    aaacttattgtttaatactt 32
             ||||||||||||||||||||
Sbjct: 35694 aaacttattgtttaatactt 35713



to top

>gb|AC061710.16| Homo sapiens 3 BAC RP11-395F21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 187657

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    ttagataaacttttgagaaa 217
              ||||||||||||||||||||
Sbjct: 100340 ttagataaacttttgagaaa 100321



to top

>gb|AC022486.4|AC022486 Homo sapiens BAC clone RP11-569J3 from Y, complete sequence
          Length = 156357

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    ataaacaaagcacactgcaa 175
              ||||||||||||||||||||
Sbjct: 116672 ataaacaaagcacactgcaa 116691



to top

>emb|BX294113.7| Zebrafish DNA sequence from clone DKEYP-73G8 in linkage group 24,
             complete sequence
          Length = 199820

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 344   acacaagcatgagcatgtccatga 367
             |||||||||| |||||||||||||
Sbjct: 68031 acacaagcattagcatgtccatga 68008



to top

>gb|AC007379.2|AC007379 Homo sapiens BAC clone RP11-143C1 from Y, complete sequence
          Length = 174082

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   ataaacaaagcacactgcaa 175
             ||||||||||||||||||||
Sbjct: 21693 ataaacaaagcacactgcaa 21674



to top

>ref|NG_004636.1| Homo sapiens chromosome Y palindromes P4 and P5 (P4-P5@) on chromosome Y
          Length = 1351786

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 156     ataaacaaagcacactgcaa 175
               ||||||||||||||||||||
Sbjct: 1174694 ataaacaaagcacactgcaa 1174675



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 156     ataaacaaagcacactgcaa 175
               ||||||||||||||||||||
Sbjct: 1113516 ataaacaaagcacactgcaa 1113535



to top

>gb|AC149314.2| Phakopsora pachyrhizi clone JGIAFNA-101K12, complete sequence
          Length = 35483

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 344   acacaagcatgagcatgtccatgagagt 371
             |||||| ||||||||||| |||||||||
Sbjct: 12685 acacaatcatgagcatgtgcatgagagt 12658



to top

>emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 in linkage group 24,
              complete sequence
          Length = 213091

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 344    acacaagcatgagcatgtccatga 367
              |||||||||| |||||||||||||
Sbjct: 207721 acacaagcattagcatgtccatga 207744



to top

>gb|AC125380.4| Mus musculus BAC clone RP23-204N23 from 1, complete sequence
          Length = 214005

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   tacataaacaaagcacactg 172
             ||||||||||||||||||||
Sbjct: 31022 tacataaacaaagcacactg 31003



to top

>dbj|AP006401.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT18E13, TM0283,
             complete sequence
          Length = 112721

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   tgagaaaggctttacttgta 230
             ||||||||||||||||||||
Sbjct: 91431 tgagaaaggctttacttgta 91412


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,479,434
Number of Sequences: 3902068
Number of extensions: 5479434
Number of successful extensions: 117313
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117059
Number of HSP's gapped (non-prelim): 246
length of query: 502
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 480
effective length of database: 17,147,199,772
effective search space: 8230655890560
effective search space used: 8230655890560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top