ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart13a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 264 2e-67
2dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic D... 264 2e-67
3dbj|AK059817.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 2e-67
4ref|NM_191639.1| Oryza sativa (japonica cultivar-group), predic... 50 0.006
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
6dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
7dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
8ref|XM_469352.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.023
9ref|XM_469351.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.023
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 48 0.023
11emb|Y09916.1|TAPSBGER2 T.aestivum mRNA for germin-like protein 2... 48 0.023
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
13gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genom... 48 0.023
14dbj|AK059872.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.023
15ref|XM_642870.1| Entamoeba histolytica HM-1:IMSS Sec24-related p... 44 0.36
16gb|AY108860.1| Zea mays PCO074541 mRNA sequence 44 0.36
17gb|AY103823.1| Zea mays PCO141891 mRNA sequence 44 0.36
18gb|AF542528.2| Cryptococcus neoformans var. grubii strain 125.91... 42 1.4
19gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 42 1.4
20emb|Y09915.1|TAPSBGER1 T.aestivum mRNA for germin-like protein 1 42 1.4
21emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome... 42 1.4
22gb|AC164663.5| Mus musculus 10 BAC RP23-44F24 (Roswell Park Canc... 42 1.4
23emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 42 1.4
24gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 1.4
25gb|AC068561.2|AC068561 Mus musculus strain C57BL6/J chromosome 6... 42 1.4
26gb|AF162137.2|AF162137 Mus musculus WNT-2 gene, partial cds; put... 42 1.4
27gb|M21962.1|WHTGAMINA Triticum aestivum germin protein precursor... 42 1.4
28gb|AF261942.1|AF261942 Zea mays clone AW042316 germin-like prote... 42 1.4
29gb|AC158647.2| Mus musculus 6 BAC RP23-275N13 (Roswell Park Canc... 42 1.4
30gb|M63223.1|WHTGERMIN Wheat germin 9f-2.8 gene, complete cds 42 1.4
31ref|XM_469349.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
32ref|XM_478212.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
33gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 5.6
34gb|AF486581.1| Uncultured bacterium aminoglycoside 3'-N-acetyltr... 40 5.6
35gb|AY190943.1| Drosophila virilis clone DVIF01_25_B23 (D1415) ge... 40 5.6
36emb|AL159990.12| Human DNA sequence from clone RP11-141J10 on ch... 40 5.6
37emb|Y14203.1|HVY14203 Hordeum vulgare mRNA for oxalate oxidase (... 40 5.6
38emb|Y09918.1|TAPSBGER4 T.aestivum mRNA for germin-like protein 4... 40 5.6
39emb|Y09917.1|TAPSBGER3 T.aestivum mRNA for germin-like protein 3 40 5.6
40emb|AJ492381.1|LPE492381 Lolium perenne mRNA for oxalate oxidase... 40 5.6
41emb|AJ492380.1|LPE492380 Lolium perenne mRNA for oxalate oxidase... 40 5.6
42emb|BX890560.9| Zebrafish DNA sequence from clone CH211-204O10 i... 40 5.6
43gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 5.6
44gb|AC153550.10| Mus musculus 10 BAC RP23-250H23 (Roswell Park Ca... 40 5.6
45gb|AE012048.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.6
46emb|AJ556991.1|TAE556991 Triticum aestivum mRNA for oxalate oxid... 40 5.6
47dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
48dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
49gb|AC018474.31| Homo sapiens 12 BAC RP11-757E18 (Roswell Park Ca... 40 5.6
50dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
51dbj|AP005546.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
52dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
53dbj|AK109010.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
54dbj|AK108987.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
55dbj|AK103716.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
56gb|AY160683.1| Bos taurus solute carrier family 35 member 3 (slc... 40 5.6
57gb|L15737.1|BLYGERMIN Barley germin mRNA, partial cds 40 5.6 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  264 bits (133), Expect = 2e-67
 Identities = 205/229 (89%)
 Strand = Plus / Plus

                                                                            
Query: 186      gccttcttgggcacgccgaacctcttctcgatccgccggagctcctccgcggtcagcccg 245
                ||||||||||||  ||||||||||||||| | ||||||||||||| |||  || ||||||
Sbjct: 19617201 gccttcttgggcgggccgaacctcttctccagccgccggagctccgccggagtgagcccg 19617260

                                                                            
Query: 246      aaggccctctcaaggacggcgcccctgatccctgacccgaacacggtggccgggatgcgc 305
                || |||||||| ||||||||  ||||||| || ||||||||||| || ||||||||||| 
Sbjct: 19617261 aacgccctctcgaggacggcctccctgatgccggacccgaacaccgtcgccgggatgcgg 19617320

                                                                            
Query: 306      acgatgccggggttctcgctgttgaaggtgccgtagacggtggccggctggtcgccgacg 365
                |||||||||||||||||||||||||||| ||||||||| |||||||||  ||||||||||
Sbjct: 19617321 acgatgccggggttctcgctgttgaaggcgccgtagaccgtggccggcgtgtcgccgacg 19617380

                                                                 
Query: 366      ttgagctggaagtgcaccatgccgcgggggaacaccatgacctccccct 414
                ||||||||||||||||||||| |||| ||||||||||| ||||||||||
Sbjct: 19617381 ttgagctggaagtgcaccatggcgcgcgggaacaccatcacctccccct 19617429
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>dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0605D08
          Length = 144340

 Score =  264 bits (133), Expect = 2e-67
 Identities = 205/229 (89%)
 Strand = Plus / Plus

                                                                         
Query: 186   gccttcttgggcacgccgaacctcttctcgatccgccggagctcctccgcggtcagcccg 245
             ||||||||||||  ||||||||||||||| | ||||||||||||| |||  || ||||||
Sbjct: 83487 gccttcttgggcgggccgaacctcttctccagccgccggagctccgccggagtgagcccg 83546

                                                                         
Query: 246   aaggccctctcaaggacggcgcccctgatccctgacccgaacacggtggccgggatgcgc 305
             || |||||||| ||||||||  ||||||| || ||||||||||| || ||||||||||| 
Sbjct: 83547 aacgccctctcgaggacggcctccctgatgccggacccgaacaccgtcgccgggatgcgg 83606

                                                                         
Query: 306   acgatgccggggttctcgctgttgaaggtgccgtagacggtggccggctggtcgccgacg 365
             |||||||||||||||||||||||||||| ||||||||| |||||||||  ||||||||||
Sbjct: 83607 acgatgccggggttctcgctgttgaaggcgccgtagaccgtggccggcgtgtcgccgacg 83666

                                                              
Query: 366   ttgagctggaagtgcaccatgccgcgggggaacaccatgacctccccct 414
             ||||||||||||||||||||| |||| ||||||||||| ||||||||||
Sbjct: 83667 ttgagctggaagtgcaccatggcgcgcgggaacaccatcacctccccct 83715
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>dbj|AK059817.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-C02, full
           insert sequence
          Length = 997

 Score =  264 bits (133), Expect = 2e-67
 Identities = 205/229 (89%)
 Strand = Plus / Minus

                                                                       
Query: 186 gccttcttgggcacgccgaacctcttctcgatccgccggagctcctccgcggtcagcccg 245
           ||||||||||||  ||||||||||||||| | ||||||||||||| |||  || ||||||
Sbjct: 740 gccttcttgggcgggccgaacctcttctccagccgccggagctccgccggagtgagcccg 681

                                                                       
Query: 246 aaggccctctcaaggacggcgcccctgatccctgacccgaacacggtggccgggatgcgc 305
           || |||||||| ||||||||  ||||||| || ||||||||||| || ||||||||||| 
Sbjct: 680 aacgccctctcgaggacggcctccctgatgccggacccgaacaccgtcgccgggatgcgg 621

                                                                       
Query: 306 acgatgccggggttctcgctgttgaaggtgccgtagacggtggccggctggtcgccgacg 365
           |||||||||||||||||||||||||||| ||||||||| |||||||||  ||||||||||
Sbjct: 620 acgatgccggggttctcgctgttgaaggcgccgtagaccgtggccggcgtgtcgccgacg 561

                                                            
Query: 366 ttgagctggaagtgcaccatgccgcgggggaacaccatgacctccccct 414
           ||||||||||||||||||||| |||| ||||||||||| ||||||||||
Sbjct: 560 ttgagctggaagtgcaccatggcgcgcgggaacaccatcacctccccct 512
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>ref|NM_191639.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 675

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 358 cgccgacgttgagctggaagtgcaccatgccgcgggg 394
           |||||||||||||||||||||||  || |||||||||
Sbjct: 502 cgccgacgttgagctggaagtgctgcaggccgcgggg 466
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                     
Query: 358      cgccgacgttgagctggaagtgcaccatgccgcgggg 394
                |||||||||||||||||||||||  || |||||||||
Sbjct: 29225658 cgccgacgttgagctggaagtgctgcaggccgcgggg 29225622
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>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0692C11
          Length = 169562

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 358  cgccgacgttgagctggaagtgcaccatgccgcgggg 394
            |||||||||||||||||||||||  || |||||||||
Sbjct: 4521 cgccgacgttgagctggaagtgctgcaggccgcgggg 4485
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>dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0684B02
          Length = 132470

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 358   cgccgacgttgagctggaagtgcaccatgccgcgggg 394
             |||||||||||||||||||||||  || |||||||||
Sbjct: 71445 cgccgacgttgagctggaagtgctgcaggccgcgggg 71409
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>ref|XM_469352.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1017

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 306 acgatgccggggttctcgctgttgaagg 333
           |||||||||||||||| |||||||||||
Sbjct: 702 acgatgccggggttctggctgttgaagg 675
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>ref|XM_469351.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 684

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 306 acgatgccggggttctcgctgttgaagg 333
           |||||||||||||||| |||||||||||
Sbjct: 560 acgatgccggggttctggctgttgaagg 533
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 306      acgatgccggggttctcgctgttgaagg 333
                |||||||||||||||| |||||||||||
Sbjct: 27499976 acgatgccggggttctggctgttgaagg 27500003



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 306      acgatgccggggttctcgctgttgaagg 333
                |||||||||||||||| |||||||||||
Sbjct: 27496995 acgatgccggggttctggctgttgaagg 27497022



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 306      acgatgccggggttctcgctgttgaagg 333
                |||||||| ||||||| |||||||||||
Sbjct: 27488052 acgatgccagggttctggctgttgaagg 27488079
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>emb|Y09916.1|TAPSBGER2 T.aestivum mRNA for germin-like protein 2, partial
          Length = 764

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 306 acgatgccggggttctcgctgttgaagg 333
           |||||||||||||||| |||||||||||
Sbjct: 382 acgatgccggggttctggctgttgaagg 355
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 306      acgatgccggggttctcgctgttgaagg 333
                |||||||||||||||| |||||||||||
Sbjct: 27591299 acgatgccggggttctggctgttgaagg 27591326



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 306      acgatgccggggttctcgctgttgaagg 333
                |||||||||||||||| |||||||||||
Sbjct: 27588318 acgatgccggggttctggctgttgaagg 27588345



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 306      acgatgccggggttctcgctgttgaagg 333
                |||||||| ||||||| |||||||||||
Sbjct: 27579375 acgatgccagggttctggctgttgaagg 27579402
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>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence, complete
             sequence
          Length = 123406

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 306   acgatgccggggttctcgctgttgaagg 333
             |||||||||||||||| |||||||||||
Sbjct: 53519 acgatgccggggttctggctgttgaagg 53492



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 306   acgatgccggggttctcgctgttgaagg 333
             |||||||||||||||| |||||||||||
Sbjct: 50538 acgatgccggggttctggctgttgaagg 50511



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 306   acgatgccggggttctcgctgttgaagg 333
             |||||||| ||||||| |||||||||||
Sbjct: 62462 acgatgccagggttctggctgttgaagg 62435
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>dbj|AK059872.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-F02, full
           insert sequence
          Length = 1028

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 306 acgatgccggggttctcgctgttgaagg 333
           |||||||||||||||| |||||||||||
Sbjct: 713 acgatgccggggttctggctgttgaagg 686
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>ref|XM_642870.1| Entamoeba histolytica HM-1:IMSS Sec24-related protein (698.t00002)
            partial mRNA
          Length = 2631

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 18   atatattaatcaaatggaaaagaaat 43
            ||||||||||||||||| ||||||||
Sbjct: 1320 atatattaatcaaatggcaaagaaat 1345
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>gb|AY108860.1| Zea mays PCO074541 mRNA sequence
          Length = 589

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 359 gccgacgttgagctggaagtgcaccatgccgcggggga 396
           ||||||||||| |||||||||||| | |||||| ||||
Sbjct: 70  gccgacgttgaactggaagtgcacgaggccgcgcggga 33
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>gb|AY103823.1| Zea mays PCO141891 mRNA sequence
          Length = 1313

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 322 cgctgttgaaggtgccgtagacggtg 347
           |||||||| |||||||||||||||||
Sbjct: 809 cgctgttggaggtgccgtagacggtg 784
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>gb|AF542528.2| Cryptococcus neoformans var. grubii strain 125.91 mating type a locus,
             complete sequence
          Length = 153973

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 321   tcgctgttgaaggtgccgtag 341
             |||||||||||||||||||||
Sbjct: 76915 tcgctgttgaaggtgccgtag 76895
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 343     cggtggccggctggtcgccga 363
               |||||||||||||||||||||
Sbjct: 1371502 cggtggccggctggtcgccga 1371482
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>emb|Y09915.1|TAPSBGER1 T.aestivum mRNA for germin-like protein 1
          Length = 856

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 309 atgccggggttctcgctgttgaagg 333
           ||||||||||||| |||||||||||
Sbjct: 634 atgccggggttctggctgttgaagg 610
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>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13
          Length = 349306

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 343    cggtggccggctggtcgccga 363
              |||||||||||||||||||||
Sbjct: 338227 cggtggccggctggtcgccga 338207
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>gb|AC164663.5| Mus musculus 10 BAC RP23-44F24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 192449

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 117    agcaacgaaccaagtactcat 137
              |||||||||||||||||||||
Sbjct: 116760 agcaacgaaccaagtactcat 116740
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>emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             5/14
          Length = 299450

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 343   cggtggccggctggtcgccga 363
             |||||||||||||||||||||
Sbjct: 58658 cggtggccggctggtcgccga 58638
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>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete
             sequence
          Length = 1632307

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 321   tcgctgttgaaggtgccgtag 341
             |||||||||||||||||||||
Sbjct: 48570 tcgctgttgaaggtgccgtag 48590
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>gb|AC068561.2|AC068561 Mus musculus strain C57BL6/J chromosome 6 clone RP23-86H7, complete
              sequence
          Length = 230839

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 9      cataagtatatatattaatcaaatggaaa 37
              ||||| ||||||||||||| |||||||||
Sbjct: 185716 cataattatatatattaataaaatggaaa 185744
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>gb|AF162137.2|AF162137 Mus musculus WNT-2 gene, partial cds; putative ankyrin-related protein
             and cystic fibrosis transmembrane conductance regulator
             (CFTR) genes, complete cds; and unknown gene
          Length = 357856

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 9     cataagtatatatattaatcaaatggaaa 37
             ||||| ||||||||||||| |||||||||
Sbjct: 18925 cataattatatatattaataaaatggaaa 18953
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>gb|M21962.1|WHTGAMINA Triticum aestivum germin protein precursor, mRNA, complete cds
          Length = 1012

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 309 atgccggggttctcgctgttgaagg 333
           ||||||||||||| |||||||||||
Sbjct: 633 atgccggggttctggctgttgaagg 609
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>gb|AF261942.1|AF261942 Zea mays clone AW042316 germin-like protein 2 (GLP2) mRNA, partial
           cds
          Length = 591

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 359 gccgacgttgagctggaagtgcaccatgccgcg 391
           ||||||||||| |||||||||||| | ||||||
Sbjct: 39  gccgacgttgaactggaagtgcacgaggccgcg 7
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>gb|AC158647.2| Mus musculus 6 BAC RP23-275N13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 208007

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 9      cataagtatatatattaatcaaatggaaa 37
              ||||| ||||||||||||| |||||||||
Sbjct: 112254 cataattatatatattaataaaatggaaa 112282
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>gb|M63223.1|WHTGERMIN Wheat germin 9f-2.8 gene, complete cds
          Length = 2822

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 309  atgccggggttctcgctgttgaagg 333
            ||||||||||||| |||||||||||
Sbjct: 2346 atgccggggttctggctgttgaagg 2322
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>ref|XM_469349.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 684

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 306 acgatgccggggttctcgctgttgaagg 333
           |||||||| ||||||| |||||||||||
Sbjct: 560 acgatgccagggttctggctgttgaagg 533
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>ref|XM_478212.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 636

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 gtcctccagctcgtcggcct 189
           ||||||||||||||||||||
Sbjct: 567 gtcctccagctcgtcggcct 586
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    tcctccgcggtcagcccgaa 247
              ||||||||||||||||||||
Sbjct: 898631 tcctccgcggtcagcccgaa 898650
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>gb|AF486581.1| Uncultured bacterium aminoglycoside 3'-N-acetyltransferase gene,
             complete cds
          Length = 38269

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 314   ggggttctcgctgttgaaggtgcc 337
             ||||||||||||| ||||||||||
Sbjct: 32845 ggggttctcgctggtgaaggtgcc 32822
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>gb|AY190943.1| Drosophila virilis clone DVIF01_25_B23 (D1415) genomic sequence
          Length = 35983

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 29   aaatggaaaagaaataagta 48
            ||||||||||||||||||||
Sbjct: 4087 aaatggaaaagaaataagta 4068
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>emb|AL159990.12| Human DNA sequence from clone RP11-141J10 on chromosome 9 Contains the
             3' end of the TRPM3 gene for transient receptor potential
             cation channel subfamily M, member 3 (MLSN2, LTRPC3,
             FLJ11726) and two novel genes, complete sequence
          Length = 148833

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     cataagtatatatattaatc 28
             ||||||||||||||||||||
Sbjct: 93884 cataagtatatatattaatc 93865
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>emb|Y14203.1|HVY14203 Hordeum vulgare mRNA for oxalate oxidase (HvOxOa)
          Length = 970

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 306 acgatgccggggttctcgctgttgaagg 333
           |||||||| ||||||| |||||||||||
Sbjct: 643 acgatgccagggttctggctgttgaagg 616
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>emb|Y09918.1|TAPSBGER4 T.aestivum mRNA for germin-like protein 4, partial
          Length = 572

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 306 acgatgccggggttctcgctgttgaagg 333
           ||||||||||||||||  ||||||||||
Sbjct: 197 acgatgccggggttctgtctgttgaagg 170
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>emb|Y09917.1|TAPSBGER3 T.aestivum mRNA for germin-like protein 3
          Length = 1027

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 306 acgatgccggggttctcgctgttgaagg 333
           ||||| |||||||||| |||||||||||
Sbjct: 610 acgattccggggttctggctgttgaagg 583
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>emb|AJ492381.1|LPE492381 Lolium perenne mRNA for oxalate oxidase 4 (oxO4 gene)
          Length = 828

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 306 acgatgccggggttctcgctgttgaagg 333
           |||||||| ||||||| |||||||||||
Sbjct: 548 acgatgcctgggttctggctgttgaagg 521
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>emb|AJ492380.1|LPE492380 Lolium perenne mRNA for oxalate oxidase 2 (oxO2 gene)
          Length = 867

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 306 acgatgccggggttctcgctgttgaagg 333
           |||||||| ||||||| |||||||||||
Sbjct: 548 acgatgcctgggttctggctgttgaagg 521
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>emb|BX890560.9| Zebrafish DNA sequence from clone CH211-204O10 in linkage group 2,
             complete sequence
          Length = 23326

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    tatattaatcaaatggaaaa 38
             ||||||||||||||||||||
Sbjct: 20386 tatattaatcaaatggaaaa 20367
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 101     gcggccatggccgaccagca 120
               ||||||||||||||||||||
Sbjct: 5604550 gcggccatggccgaccagca 5604531
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>gb|AC153550.10| Mus musculus 10 BAC RP23-250H23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 168208

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     tcaaatggaaaagaaataag 46
              ||||||||||||||||||||
Sbjct: 117290 tcaaatggaaaagaaataag 117271
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>gb|AE012048.1| Xanthomonas axonopodis pv. citri str. 306,  section 426 of 469 of the
            complete genome
          Length = 12239

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  cggtggccgggatgcgcacg 308
            ||||||||||||||||||||
Sbjct: 4534 cggtggccgggatgcgcacg 4515
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>emb|AJ556991.1|TAE556991 Triticum aestivum mRNA for oxalate oxidase precursor (OXO1 gene)
          Length = 675

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 306 acgatgccggggttctcgctgttgaagg 333
           ||||| |||||||||| |||||||||||
Sbjct: 551 acgataccggggttctggctgttgaagg 524
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 346      tggccggctggtcgccgacgttgagctggaagtgcaccat 385
                ||||||||||||  |||  ||||| |||||||||||||||
Sbjct: 22398990 tggccggctggttcccggagttgaactggaagtgcaccat 22399029



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 365      gttgagctggaagtgcaccatgcc 388
                ||||| ||||||||||||||||||
Sbjct: 22394233 gttgaactggaagtgcaccatgcc 22394256
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 170      gtcctccagctcgtcggcct 189
                ||||||||||||||||||||
Sbjct: 18553134 gtcctccagctcgtcggcct 18553153
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>gb|AC018474.31| Homo sapiens 12 BAC RP11-757E18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 172303

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 7     tccataagtatatatattaatcaa 30
             ||||||||||| ||||||||||||
Sbjct: 34231 tccataagtatctatattaatcaa 34254
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>dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0005E02
          Length = 89380

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 170  gtcctccagctcgtcggcct 189
            ||||||||||||||||||||
Sbjct: 5676 gtcctccagctcgtcggcct 5695
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>dbj|AP005546.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1003_C09
          Length = 124746

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 346   tggccggctggtcgccgacgttgagctggaagtgcaccat 385
             ||||||||||||  |||  ||||| |||||||||||||||
Sbjct: 35479 tggccggctggttcccggagttgaactggaagtgcaccat 35518



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 365   gttgagctggaagtgcaccatgcc 388
             ||||| ||||||||||||||||||
Sbjct: 30722 gttgaactggaagtgcaccatgcc 30745
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>dbj|AP003956.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1457_D07
          Length = 103688

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   gtcctccagctcgtcggcct 189
             ||||||||||||||||||||
Sbjct: 81890 gtcctccagctcgtcggcct 81909
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>dbj|AK109010.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-H10, full
           insert sequence
          Length = 1035

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 346 tggccggctggtcgccgacgttgagctggaagtgcaccat 385
           ||||||||||||  |||  ||||| |||||||||||||||
Sbjct: 575 tggccggctggttcccggagttgaactggaagtgcaccat 536
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>dbj|AK108987.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-F08, full
           insert sequence
          Length = 1026

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 365 gttgagctggaagtgcaccatgcc 388
           ||||| ||||||||||||||||||
Sbjct: 518 gttgaactggaagtgcaccatgcc 495
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>dbj|AK103716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033137P21, full
           insert sequence
          Length = 998

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 306 acgatgccggggttctcgctgttgaagg 333
           |||||||| ||||||| |||||||||||
Sbjct: 686 acgatgccagggttctggctgttgaagg 659
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>gb|AY160683.1| Bos taurus solute carrier family 35 member 3 (slc35a3) gene, complete
             cds
          Length = 22404

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    taatcaaatggaaaagaaat 43
             ||||||||||||||||||||
Sbjct: 19596 taatcaaatggaaaagaaat 19577
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>gb|L15737.1|BLYGERMIN Barley germin mRNA, partial cds
          Length = 603

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 306 acgatgccggggttctcgctgttgaagg 333
           |||||||| ||||||| |||||||||||
Sbjct: 482 acgatgccagggttctggctgttgaagg 455


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,425,702
Number of Sequences: 3902068
Number of extensions: 3425702
Number of successful extensions: 74522
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74133
Number of HSP's gapped (non-prelim): 389
length of query: 420
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 398
effective length of database: 17,147,199,772
effective search space: 6824585509256
effective search space used: 6824585509256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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